Citrus Sinensis ID: 000636

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380

MWQLMPETDGSSHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKVC

ccEEcccccccccEEEEEEccccccccccccccccHHHHHHHcccccccEEEEEEEEEEEEEEEEEEcccccccccccEEEEEEEEEEEEccccEEEEEccEEEEEEEEEEccccEEEEcccccEEEEEccccEEEEEccccEEEEEEEccEEEEEEEccccccccEEEEEEEcccEEEEEEEEccccccccccEEEEccccEEEEEEcEEEEEEEEEEcccccccEEEEccccEEEEEcccccEEEEEEcccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccEEEEEEEEEEEEEEEEEEEEEEEEccccccccEEEEcccccccEEEEEEEEcccccccccEEEEEcccEEEEEccccEEEEccccEEEEEEEEccccccEEEEEEEEEcccEEEEEEcEEEEEEcccEEEEEEEEEEEcccEEEEEcccccEEEEEEccccEEEEccccccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEEEccccccccccccEEEEEEEEEEEEccccccccccccccccEEEEcccccEEEEccccEEEEEEcccEEEEEEEcccccccccccEEEEEEEEccccccccccEEEEEEEcccccEEEEEEEEccEEEEEEEEcccccccccccEEEEEEEEEEEEcccEEEEEEccccccccccccccccccccccEEEEEEEEEcccEEEEEEEEEcccccEEEcccccEEEEEEEcccccEEEEccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEcccccccccEEEcccccEEEEEEEEEEEEEEEEccEEEEEEccccEEEEEEEEcEEEEEEEEcccccEEEEEEcccEEEEEEEEEEccccEEEEEEEEccccccccEEEEEEEEEEEEEEEEEcEEEEEEEcEEEEEEEEEEEccccEEEccccEEEEEEEEEcccEEEEEEccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEEEEEEEEccccEEEccEEEEEEccEEEEEEEEcccccEEEEEEEccccEEEEEcccEEEEEEEEEEEEEEEEEEEccEEEEEEEEEEEEEEEEEEEEEEccccEEEEcEEEEEEEccccccccccccccEEEEEEEccccEEEEEcccccccccccccccccEEEEEEcccccccEEEEEEEEEEEcEEEEEEEEEEEccccccccccEEEEccEEEEEEEcccEEEccccEEccccccccEEEEccccccccccccccccEEEEEEEEEccccccccEEEcEEEEccccEEEEEcccEEEEEEEEccccEEEEEEEEEEEEEEEEEEEEccccEEEEEccccEEEEEEEEEccccccccccccEEEEEEEEccccEEEEEEEEcccEEEEEEEc

cccEccccccccccEEEEEcccccccccccccccHHHHHHHHHccccccEEEEEEEcccEEEEEEEEccccHcccccHEEEEEEHHEEEcccccEEEEcccEEEEEEEEEEcccEEEEEcccccEEEEEccccEEEEcccccEEEEEEcccEEEEEEEccccccccccEEEEEcccEEEEEEEEEccccccccccEEcccccEEEEEEccEEEEEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEccccEEEcccccEEEEEEEcccEEEEEEEEEEEEEcccccccEEEEEEEEEEEEEEEEEccccccccEEEEEccccccEEEEEEEEEccccccccEEEEccccEEEEEEccEEEEEccccEEEEEEEEccccccccEEEEEEEccccEEEEccccEEEEEccEEEEEEEEEEccccccEcccccccEEEEEccccccEEEEEcccccEEEcccccccccccccccccEEEEEEEEccEEEEEEEEEcccEEEcccccccEEEEEEEEEEEEccEEEEcccccccccEEEEcHHHcccccccccccEEEEEccccEEEEEEcccccccccccHccccHHHEcEcccccccEEEEEEccccccEEEEEEEccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEEEEcccccccccccccHHccccccccEEEEEEcccccEEEEEEEEEcccccEcccccEEEEEEEEcccccEEEEcccccccccccccEEEEEEEccEEEEEEEEEEEEcccccccccccccccccccccccEEEEEEEccEEEcccEEEEEEccccEEEEEEEEccEEEEEEEccccEEEEEEcccccEEEEEEEEEccccEEEEEEEEcccccccccEEEEEEEEcEEEEEEEccEEEEcccEEEEEEEEEcccccccccHHHHHHEEEEEEEcccEEEEEEcccccccccccccEEEEEEEEEEEEEEEEEEEEEcccccEEEcccEEEEEccccEEccccEEEEEccEEEEEEEcccccccEEEEEEcccEEEEEEcccEEEEEEEEcEEEEEEEEEEcccEEEEEcEEEEEEEEEEEEEEEEEccEEEEccEcEEEEcccccccEEEccccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEccccccccccccEEEEEEEEccccEEEEEEEEccccccccccccEcccEEEEEEEccccccccccccccccccccHHHEcccccccEEEEEcccccEEEEEEEcccccccEEEEEcccEEEcccEEEcccEccEEEEEEEccccccEEEEEEEEEEcEEEEEEEccccEEEEEcccccEEEEEEEEEcccccHHHHHcccEEEEEccccccEEEEEcccccccEEEEEEc

mwqlmpetdgsshhllhvplkdsplsdcgglcgdLDVQIELensgafsdlYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEamsieppspvFVLVGAALQYKLKVIrgnipqvvalpsphhrwsvsnssvaQVDNMMGLTQALRLGQTAVIVEdtrvaghtqvsslnvvlpdtlwlyisplsisgdpvegtkaipsVARWFVVSGFQYLIQMKVfsqgpgsqeiyitesddiklsdnqsecwrtfsmpndlvlkhgwrnsriLKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDrikfsldqtngvsesillpwapgiyQEVELMatggcaktssdykwfssdmatVSITASgvvqakkpgkaTVKVVSIFDSFNYDEIVIEvstpssmvmlrnfpVETVVGSHLQAAVTMKTLNGayfyrcdafsssvnwkagseSFIVLNAtkkqpfldklgtvehdislhgppcswahlyasssgrtmLHATLSkdyqhfdrsfdgpivlkassriaaypplivqqagdgsgfggywfnlgqseTTTQMEALDKlylvprthvdvllvggpepweedvDFIETFEIfngkhnhasdgvHIHVVSGSSKNLYGVFCQTLGTFELVFKrgnlvgddhplpavAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAqadrspgrirvtpvtvangqtIRIAAVGisssgeafanssslclgwelsncdglaywddaygsqksaSSWERFLVLQNESGLCVVRatasgfcdakdghhsaQLLEISESFLTDAVRLQLVSTLrvnpeynllffnpdakanlsiaggSCFLEAAVNDSQVVEVIQAPEGLRCLQLmlspkglgTALVTVYdvglappraASALVQVADVDWIKIMSGEEISLMEGRSQSIDLmagiddgstfdsfqytYMDIRVHIEDHIVELidddatsspdggyfsmsSFKIMAKHLGITTLYVSARQqsgheilsqpirvevyapprihphdiflvpgasymltlkggptVGVYVDYTSTDEEIATIHRssgqlfaispgnTTLIATVFGNGDVVICQAFssvkvgvpssvtlnaqsdqlavghempihplfpegdvfSFYELCRNynwtiedekILGFWLgdqlhsenqdlqsaasgeiqfsndldkKELGFIKTLygrsagrtdvattfscdfvsdsysesriYSASISLsvvsdlplalgipvtwvlpphytstsllpssseshgqwdsqshkgsIVYSLLKFCSEkneaaskddisidgdtikttssnhlaciqakdrssgrieiASCVRVAEVAQIrisnryplnvIHLAVGaeceipisyydalgtpfheAHNVILYHAETNYHDVVSInytlngsgkiylkvc

mwqlmpetdgssHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRvaghtqvsslnvvlPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKfsldqtngvSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITAsgvvqakkpgkATVKVVsifdsfnyDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQtaaqadrspgrirvtpvtvangqtIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGeiqfsndldkKELGFIKTLygrsagrtdvATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNeaaskddisidgdtikttssnhlaciqakdrssgrieIASCVRVAEVAqirisnryplNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYtlngsgkiylkvc

MWQLMPETDGSSHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGIsssgeafansssLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVlpphytstsllpssseshGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKVC

***************LHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAA******GRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAY**********RFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQL********************LDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYT**********************SIVYSLLKFCS************************HLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLK**

MWQ***********L*HVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKK***********HDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNH*****H***VSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQ*******************ANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCD*******************RFLVLQNESGLCVVRATASGFCDAKD************SFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYT*********************GSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKVC

***********SHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQ********PGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTS*******************KGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKVC

*W***PE*DGSSHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWAHLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRISNRYPLNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLKVC

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1380	2.2.26 [Sep-21-2011]
Q5VU65		1888	Nuclear pore membrane gly	no	no	0.845	0.618	0.227	1e-42
Q9D2F7		1881	Nuclear pore membrane gly	yes	no	0.851	0.624	0.219	9e-40
P11654		1886	Nuclear pore membrane gly	yes	no	0.728	0.532	0.221	8e-37
Q8TEM1		1887	Nuclear pore membrane gly	no	no	0.849	0.621	0.231	9e-37
Q9QY81		1886	Nuclear pore membrane gly	no	no	0.847	0.620	0.219	2e-34

>sp\|Q5VU65\|P210L_HUMAN Nuclear pore membrane glycoprotein 210-like OS=Homo sapiens GN=NUP210L PE=2 SV=1	Back alignment and function desciption

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 319/1404 (22%), Positives = 579/1404 (41%), Gaps = 237/1404 (16%)

Query: 40   ELENSGAFSDLYVVKGIGIGHEMVSVHLLETEFMHMADSIL-LTVAEAMSIEPPSPVFVL 98
            E+E      D+ +V GI  G  +V V + E  +  +A +++ L V E + + P   +++L
Sbjct: 206  EMEKEEKQGDVILVSGIRTGAAVVKVRIHEPFYKKVAAALIRLLVLENIFLIPSHDIYLL 265

Query: 99   VGAALQYKL-KVIRGNIPQVVALPSPH-------HRWSVSNS---SVAQVDNMMGLTQAL 147
            VG  ++Y++ K+++G + +V   P  H       HR +++ S    VA +D+   +  A 
Sbjct: 266  VGTYIKYQVAKMVQGRVTEV-KFPLEHYILELQDHRVALNGSHSEKVAILDDKTAMVTAS 324

Query: 148  RLGQTAVI-----VEDTRVAGHTQVSSLNVVLPDTLWLYISPLSISGDPVEGTKAIPSVA 202
            +LGQT ++     V    V+G     ++ VV P  L   + P    G+            
Sbjct: 325  QLGQTNLVFVHKNVHMRSVSGLPN-CTIYVVEPGFLGFTVQP----GN------------ 367

Query: 203  RWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPND-----LVL 257
            RW +  G  Y+I + VF +   S ++YI  SD++++         T+  P +     L  
Sbjct: 368  RWSLEVGQVYVITVDVFDKS--STKVYI--SDNLRI---------TYDFPKEYFEEQLTT 414

Query: 258  KHGWRNSRILKATSQGLGKLTASLTYF----SGLHDTKEVLKVVQEIMVCDRIKFSLDQT 313
             +G  +  I+KA   G+  + ASLT        +   K ++K  QE+    +I F +  T
Sbjct: 415  VNG--SYHIVKALKDGVVVINASLTSIIYQNKDIQPIKFLIKHQQEV----KIYFPIMLT 468

Query: 314  NGVSESILLPWAP-GIYQEVELMATGGCAKTSSDYKWFSSDMATVSITASGVVQAKK-PG 371
                + +  P  P G+    ++   GG    S ++ W SS+   V +T  GVV A +  G
Sbjct: 469  ---PKFLAFPHHPMGMLYRYKVQVEGG----SGNFTWTSSNETVVIVTTKGVVTAGQVRG 521

Query: 372  KATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVTMKTLN-----G 426
             +TV    + + F Y EI I V   + M +L  F  +  +G  ++  + M  +N      
Sbjct: 522  NSTVLARDVQNPFRYGEIKIHVLKLNKMELL-PFHADVEIGQIIEIPIAMYHINKETKEA 580

Query: 427  AYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGT---VEHDISLHGPP-CSWAHL 482
              F  C   S  +N                   +DK G    ++  I   GP  CS  H+
Sbjct: 581  MAFTDCSHLSLDLN-------------------MDKQGVFTLLKEGIQRPGPMHCSSTHI 621

Query: 483  YASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFN 542
             A S G T++  ++++  ++          L++S+  AAY PL                 
Sbjct: 622  AAKSLGHTLVTVSVNECDKY----------LESSATFAAYEPL----------------- 654

Query: 543  LGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPW--EEDVDFIETFEIFNGKHNHASDG 600
                     +  ++   +  ++  +++  GGP PW  E    F+E     N +       
Sbjct: 655  -------KALNPVEVALVTWQSVKEMVFEGGPRPWILEPSRFFLE----LNAEKTEKIGI 703

Query: 601  VHIHVVSGSSKN--LYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASI 658
              + + S   +N  +Y + C  LG   L F+ GN  G  +P PAV  + +   C+ PAS+
Sbjct: 704  AQVWLPSKRKQNQYIYRIQCLDLGEQVLTFRIGNHPGVLNPSPAVEVLQVRFICAHPASM 763

Query: 659  ALLVDEPVNERKVIQTAAQADRSPGRIR-VTPVTVANGQTIRIAAVGISSSGEAFANSSS 717
            ++    PV +   +   AQ    P   + + PV+      + +A          F N SS
Sbjct: 764  SV---TPVYK---VPAGAQPCPLPQHNKWLIPVSRLRDTVLELAV--FDQHRRKFDNFSS 815

Query: 718  LCLGWELSNCDGLAYWDDAY---------GSQKSASSWERFLVLQNESGLCVVRATASGF 768
            L L W+ SN + LA+++D           GS ++     + L +    G  ++     G+
Sbjct: 816  LMLEWKSSN-ETLAHFEDYKSVEMVAKDDGSGQTRLHGHQILKVHQIKGTVLIGVNFVGY 874

Query: 769  CDAKDGHHSAQLLEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFL 828
             + K         EIS    +  V L LV  + V PE   ++ +PD K   S+  GS + 
Sbjct: 875  SEKKSPK------EISNLPRSVDVELLLVDDVTVVPENATIYNHPDVKETFSLVEGSGYF 928

Query: 829  EAAVNDS-QVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVD 887
               VN S Q V  I   E    ++L+  P   G   + VYD+ LA    A+A ++V+D+ 
Sbjct: 929  --LVNSSEQGVVTITYMEAESSVELV--PLHPGFFTLEVYDLCLAFLGPATAHLRVSDIQ 984

Query: 888  WIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTY---MDIRVHIEDHIVELIDDD 944
             +++   +++ + +    ++ ++     GS+   FQ  Y   M++++ +   IV L   +
Sbjct: 985  ELELDLIDKVEIDKTVLVTVRVL-----GSSKRPFQNKYFRNMELKLQLASAIVTLTPME 1039

Query: 945  ATSSPDGGYFSMSSFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIF 1004
                    Y       + A  +G TTL   A+ + G +  S P  +EV+ P R+ P  + 
Sbjct: 1040 QQDEYSENYI------LRATTIGQTTLVAIAKDKMGRKYTSTPRHIEVFPPFRLLPEKMT 1093

Query: 1005 LVPGASYMLTLKGGPTVGVYVDYTSTDEEIATIHRS---SGQLFAISPGNTTLIATVFGN 1061
            L+P     +  +GGP     V ++ +++ +A ++R    +G++   +  + T+       
Sbjct: 1094 LIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKIVGTAVVHGTIQTVNEDT 1153

Query: 1062 GDVVI-CQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPL--FPEGDVFSFYELC--RN 1116
            G V++  Q    ++V    +V + A + +L    +MP++ +        FSF        
Sbjct: 1154 GKVIVFSQDEVQIEVVQLRAVRILAAATRLITATKMPVYVMGVTSTQTPFSFSNANPGLT 1213

Query: 1117 YNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTD 1176
            ++W++    +L        HSE   LQ                E  F   ++ ++AGRT 
Sbjct: 1214 FHWSMSKRDVLDLV---PRHSE-VFLQLPV-------------EHNFAMVVHTKAAGRTS 1256

Query: 1177 VATTFSCDFVSDSYSESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSES 1236
            +  T  C   S    E  +   S  + ++    L L        P       L+P +S+ 
Sbjct: 1257 IKVTVHCMNSSSGQFEGNLLELSDEVQILVFEKLQL------FYPECQPEQILMPINSQL 1310

Query: 1237 HGQWDSQSHKGSIVYSLLKFCSEKNEAASKD-DISIDGDTIKTTSSNHLACIQAKDRSSG 1295
              +  +     + V S +  C   +    +D +  +   +I  T+   +  I+    +  
Sbjct: 1311 --KLHTNREGAAFVSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFGVNQT 1368

Query: 1296 RIEIASCVRVAEVAQIRISNRYPLNVIH------LAVGAECEIPISYYDALGTPFHEAHN 1349
             I   + V+VA V  +R+S++  L            +G      + +Y+++G  FH  HN
Sbjct: 1369 TI---TGVQVAPVTYLRVSSQPKLYTAQGRTLSAFPLGMSLTFTVQFYNSIGEKFH-THN 1424

Query: 1350 VILYHAETNYHDVVSI-----NYT 1368
              LY A  N  D++ I     NYT
Sbjct: 1425 TQLYLA-LNRDDLLHIGPGNKNYT 1447

Homo sapiens (taxid: 9606)

>sp\|Q9D2F7\|P210L_MOUSE Nuclear pore membrane glycoprotein 210-like OS=Mus musculus GN=Nup210l PE=2 SV=2	Back alignment and function description

>sp\|P11654\|PO210_RAT Nuclear pore membrane glycoprotein 210 OS=Rattus norvegicus GN=Pom210 PE=1 SV=1	Back alignment and function description

>sp\|Q8TEM1\|PO210_HUMAN Nuclear pore membrane glycoprotein 210 OS=Homo sapiens GN=NUP210 PE=1 SV=3	Back alignment and function description

>sp\|Q9QY81\|PO210_MOUSE Nuclear pore membrane glycoprotein 210 OS=Mus musculus GN=Nup210 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1380
359488807		2363	PREDICTED: nuclear pore membrane glycopr	0.997	0.582	0.694	0.0
296087607		1961	unnamed protein product [Vitis vinifera]	0.997	0.701	0.694	0.0
255560914		2256	RNA binding protein, putative [Ricinus c	0.982	0.601	0.672	0.0
356513961		2304	PREDICTED: nuclear pore membrane glycopr	0.988	0.592	0.618	0.0
449489576		1758	PREDICTED: nuclear pore membrane glycopr	0.978	0.767	0.611	0.0
297805634		1918	EMB3012 [Arabidopsis lyrata subsp. lyrat	0.971	0.699	0.611	0.0
334188094		1923	protein embryo defective 3012 [Arabidops	0.974	0.699	0.604	0.0
449446702		2257	PREDICTED: LOW QUALITY PROTEIN: nuclear	0.976	0.596	0.604	0.0
9759492		1962	nuclear pore protein-like [Arabidopsis t	0.974	0.685	0.599	0.0
297853498		1722	EMB3012 [Arabidopsis lyrata subsp. lyrat	0.972	0.779	0.600	0.0

>gi\|359488807\|ref\|XP_002272790.2\| PREDICTED: nuclear pore membrane glycoprotein 210-like [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1957 bits (5070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 958/1380 (69%), Positives = 1137/1380 (82%), Gaps = 4/1380 (0%)

Query: 1    MWQLMPETDGSSHHLLHVPLKDSPLSDCGGLCGDLDVQIELENSGAFSDLYVVKGIGIGH 60
            MWQL PETDG   HL+HVPLKDSPLSDCGGLCGDL VQI+LE+ GAFSDLYVVKGIGIGH
Sbjct: 238  MWQLRPETDGLPPHLVHVPLKDSPLSDCGGLCGDLSVQIKLEDGGAFSDLYVVKGIGIGH 297

Query: 61   EMVSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVAL 120
            E+VSVHLLE +F HMAD I+LTVAEAMS++PPSPVF+L+GAA++Y LKVIRGNIPQVVAL
Sbjct: 298  EVVSVHLLEPQFEHMADKIVLTVAEAMSLDPPSPVFILIGAAVRYTLKVIRGNIPQVVAL 357

Query: 121  PSPHHRWSVSNSSVAQVDNMMGLTQALRLGQTAVIVEDTRVAGHTQVSSLNVVLPDTLWL 180
            PSP+HRWSV NSSVAQVD+ MGL   L LG T V VEDTRVAGH Q+SSL+VVLPDTL L
Sbjct: 358  PSPYHRWSVLNSSVAQVDSQMGLVNVLSLGVTTVTVEDTRVAGHIQMSSLHVVLPDTLCL 417

Query: 181  YISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKVFSQGPGSQEIYITESDDIKLSD 240
            YI PLS+S DP+EG K+IPS ARW+  SG QYLIQMKVFS GPG QE+YITESD++ L  
Sbjct: 418  YILPLSLSDDPLEGAKSIPSGARWYAFSGQQYLIQMKVFSGGPGGQEVYITESDEVSLQY 477

Query: 241  NQSECWRTFSMPNDLVLKHGWRNSRILKATSQGLGKLTASLTYFSGLHDTKEVLKVVQEI 300
            NQS  W+ F + + + +KH W NSRILK TS+GLG LTASL+YFSG    KEVLKVVQE+
Sbjct: 478  NQSIYWKAFLVSDRIAVKHDWWNSRILKMTSEGLGNLTASLSYFSGQPGRKEVLKVVQEV 537

Query: 301  MVCDRIKFSLDQTNGVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSIT 360
            MVC+++KFS D+ + VSE ILLPWAP +YQEV+L ATGGCAK+SSDYKWFSSDMATVS++
Sbjct: 538  MVCEKVKFSFDKRSAVSERILLPWAPAVYQEVDLKATGGCAKSSSDYKWFSSDMATVSVS 597

Query: 361  ASGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTPSSMVMLRNFPVETVVGSHLQAAVT 420
            ASGV+QAKKPGKA VKVVSIFD FNYDE+V+EV+ PSSMVML+NFPVETVVGS LQAAVT
Sbjct: 598  ASGVIQAKKPGKAAVKVVSIFDPFNYDEVVVEVALPSSMVMLQNFPVETVVGSQLQAAVT 657

Query: 421  MKTLNGAYFYRCDAFSSSVNWKAGSESFIVLNATKKQPFLDKLGTVEHDISLHGPPCSWA 480
            MK  NGAYFYRCDAFSS V WKAGSESFI++NAT + P LDKL +VE   S++GPPC+W 
Sbjct: 658  MKASNGAYFYRCDAFSSFVRWKAGSESFIIVNATGETPVLDKLESVEPYASVYGPPCAWT 717

Query: 481  HLYASSSGRTMLHATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYW 540
            ++YASS+GR MLHATL+K+YQH D  F GPIVL+ASSRI AY PL+++QAGDG+ FGGYW
Sbjct: 718  YVYASSAGRAMLHATLTKEYQHHDHPFHGPIVLQASSRIGAYLPLVLRQAGDGNQFGGYW 777

Query: 541  FNLGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHASDG 600
             N  Q+E  +Q E LD L+LVP TH+DV+LVGGPE W++ VDF ET +I + +H    DG
Sbjct: 778  INTAQAEAHSQFENLDDLFLVPGTHLDVMLVGGPEWWDKSVDFNETVDILD-EHARLKDG 836

Query: 601  VHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIAL 660
            V +H VS S  +LY V CQ LGT+++ FKRGNLVGDDHPLPAVAEV LS+TCSFP+SI L
Sbjct: 837  VLVHEVSSSYGSLYRVLCQILGTYKIAFKRGNLVGDDHPLPAVAEVELSLTCSFPSSITL 896

Query: 661  LVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSSLCL 720
            + DEPVNE  VI  A QADR+P RIRVTP+TVANG+TIRIAAVGIS+SG+AFANSSSLCL
Sbjct: 897  IADEPVNEPGVIWAATQADRNPERIRVTPITVANGRTIRIAAVGISNSGKAFANSSSLCL 956

Query: 721  GWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQL 780
             WELSNCD LA+WDD+Y    S+S WERFL+LQNES LC+VRAT  GF     GH SA L
Sbjct: 957  KWELSNCDALAFWDDSYDLGGSSSGWERFLILQNESRLCIVRATVIGFAGTVSGHVSAPL 1016

Query: 781  LEISESFLTDAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEV 840
            LE SE+ LTDAVRLQLVS+LRV PE+ LLFFN DAKANLSI GGSCFL+A VNDS+VV+V
Sbjct: 1017 LESSENVLTDAVRLQLVSSLRVTPEFKLLFFNSDAKANLSITGGSCFLDAVVNDSRVVDV 1076

Query: 841  IQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLM 900
            IQ P GL+CLQL+++PKGLGTALVTVYD+GLAP  +AS++VQVADVDWI+I SGEEISLM
Sbjct: 1077 IQPPPGLQCLQLIVAPKGLGTALVTVYDIGLAPHLSASSVVQVADVDWIRITSGEEISLM 1136

Query: 901  EGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDA-TSSPDGGYFSMSSF 959
            EG  QSI +MAG+DDGSTFD+ QY YM+I+VHIEDHIV+L+DDD   SS  GGY +   F
Sbjct: 1137 EGSVQSIIVMAGVDDGSTFDASQYVYMNIQVHIEDHIVDLVDDDNDISSIGGGYVNSPKF 1196

Query: 960  KIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGP 1019
             I+AKHLG+T LYVSARQ SG+EI S  I+VEVYAPPRIHP DIFLVPGA+Y+L +KGGP
Sbjct: 1197 MILAKHLGVTILYVSARQASGYEIASNQIKVEVYAPPRIHPPDIFLVPGAAYVLNVKGGP 1256

Query: 1020 TVGVYVDYTSTDEEIATIHRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPS 1079
             +GV ++Y S D+ IAT+++SSG+L AISPGN+TL+ATV+G GD VICQA+  +KVGVPS
Sbjct: 1257 QIGVVIEYASLDDRIATVNKSSGRLSAISPGNSTLVATVYGKGDTVICQAYGRIKVGVPS 1316

Query: 1080 SVTLNAQSDQLAVGHEMPIHPLFPEGDVFSFYELCRNYNWTIEDEKILGFWLGDQLHSEN 1139
             VTLN QS+QL VG EMPI P  P+GD+FSFYELC+NY WT+EDEK+L F + + +  + 
Sbjct: 1317 LVTLNVQSEQLDVGREMPIFPSLPQGDLFSFYELCKNYKWTVEDEKVLSFHMAEHIRGDR 1376

Query: 1140 QDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSYSESRIYSAS 1199
              L S+ S EI+    LD+K+LGFI  LYGRSAGRT VA +F+CDF+S  +S+SR YSAS
Sbjct: 1377 YGLPSSGSKEIKLPGHLDEKDLGFINMLYGRSAGRTTVAVSFNCDFISSGHSQSRSYSAS 1436

Query: 1200 ISLSVVSDLPLALGIPVTWVLPPHYTSTSLLPSSSESHGQWDSQSHKGSIVYSLLKFCSE 1259
            +S+SVVS+LPLA G+P+TWVLPP+YT++SLLPSSSES+GQWD  S KG+I YSLL+ C  
Sbjct: 1437 MSISVVSELPLAFGVPITWVLPPYYTTSSLLPSSSESYGQWD-LSRKGTITYSLLRSCGG 1495

Query: 1260 KNEAASKDDISIDGDTIKTTSSNHLACIQAKDRSSGRIEIASCVRVAEVAQIRIS-NRYP 1318
            KNE   KD ISID D IKTT SN+LACIQAKDR++G+  IASCVRVAEVAQIRI+  ++ 
Sbjct: 1496 KNEEVQKDAISIDRDRIKTTESNNLACIQAKDRTTGKTGIASCVRVAEVAQIRITPQKFS 1555

Query: 1319 LNVIHLAVGAECEIPISYYDALGTPFHEAHNVILYHAETNYHDVVSINYTLNGSGKIYLK 1378
             +VI LAV AE ++PI++ D LG PFHEA NVI   AETNY D+VSIN T +G G I+LK
Sbjct: 1556 FHVIDLAVDAEVKLPINFCDVLGNPFHEAFNVIPLDAETNYPDIVSINSTGDGYGNIHLK 1615

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296087607\|emb\|CBI34863.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255560914\|ref\|XP_002521470.1\| RNA binding protein, putative [Ricinus communis] gi\|223539369\|gb\|EEF40960.1\| RNA binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356513961\|ref\|XP_003525676.1\| PREDICTED: nuclear pore membrane glycoprotein 210-like [Glycine max]	Back alignment and taxonomy information

>gi\|449489576\|ref\|XP_004158353.1\| PREDICTED: nuclear pore membrane glycoprotein 210-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297805634\|ref\|XP_002870701.1\| EMB3012 [Arabidopsis lyrata subsp. lyrata] gi\|297316537\|gb\|EFH46960.1\| EMB3012 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334188094\|ref\|NP_198864.2\| protein embryo defective 3012 [Arabidopsis thaliana] gi\|332007169\|gb\|AED94552.1\| protein embryo defective 3012 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449446702\|ref\|XP_004141110.1\| PREDICTED: LOW QUALITY PROTEIN: nuclear pore membrane glycoprotein 210-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|9759492\|dbj\|BAB10497.1\| nuclear pore protein-like [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297853498\|ref\|XP_002894630.1\| EMB3012 [Arabidopsis lyrata subsp. lyrata] gi\|297340472\|gb\|EFH70889.1\| EMB3012 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1380
UNIPROTKB\|F1NZB4		1888	NUP210 "Uncharacterized protei	0.434	0.317	0.239	4e-37
UNIPROTKB\|F1SPG4		1898	NUP210 "Uncharacterized protei	0.383	0.278	0.231	1.4e-35
ZFIN\|ZDB-GENE-050208-132		1869	nup210 "nucleoporin 210" [Dani	0.408	0.301	0.223	3.5e-34
DICTYBASE\|DDB_G0288545		1916	nup210 "nucleoporin 210" [Dict	0.247	0.177	0.250	9.8e-33
UNIPROTKB\|Q8TEM1		1887	NUP210 "Nuclear pore membrane	0.381	0.278	0.243	9.8e-33
MGI\|MGI:1859555		1886	Nup210 "nucleoporin 210" [Mus	0.382	0.279	0.227	1.1e-31
UNIPROTKB\|F1MPW7		1830	NUP210 "Uncharacterized protei	0.385	0.290	0.227	1e-30
MGI\|MGI:1924845		1881	Nup210l "nucleoporin 210-like"	0.431	0.316	0.222	2.5e-28
UNIPROTKB\|Q5VU65		1888	NUP210L "Nuclear pore membrane	0.437	0.319	0.231	6.8e-28
RGD\|69339		1886	Nup210 "nucleoporin 210" [Ratt	0.382	0.279	0.219	1.3e-26

UNIPROTKB\|F1NZB4 NUP210 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

 Score = 328 (120.5 bits), Expect = 4.0e-37, Sum P(4) = 4.0e-37
 Identities = 161/673 (23%), Positives = 288/673 (42%)

Query:   567 DVLLVGGPEPW-EEDVDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYG---VFCQTLG 622
             D+L  GGP PW +E   F           +  S G+ +     S  N+     V C++LG
Sbjct:   662 DILFEGGPRPWIQEPSKFFRNITA----EDEESIGLSLFAPPMSRNNIQHWVQVSCKSLG 717

Query:   623 TFELVFKRGNLVGDDHPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSP 682
                +    GN     +P PAV    +   C+ P+ + L    P+     +  +    +  
Sbjct:   718 EQVIALTVGNNPSMTNPFPAVEPAVVKFICAVPSRLTLT---PIYGSPQLDLSCPLLQQ- 773

Query:   683 GRIRVTPVTVANGQTIRIAAVGIXXXXXXXXXXXXLCLGWE-----LSNCDG-----LAY 732
                +V PV+      + +AA               L + WE     L+N +      L  
Sbjct:   774 -NKQVVPVSNYRNPVLDLAAYD--QHGSKFDNFSSLSVVWESTKSSLANIEPDMPMELTL 830

Query:   733 WDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEIS-ESFL--T 789
              DD  G Q+     +  LV  ++SG   + ATA+G+   +  H  A  ++   ES L  +
Sbjct:   831 KDDGSG-QRKMHGLQTVLV-HHKSGTTAISATATGY---QQSHLKAAKVKTPYESLLPVS 885

Query:   790 DAVRLQLVSTLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEV-IQAPEGLR 848
               + L LV  ++V+P    ++ +PD +A L I  GS +     + + VV V ++  +G+ 
Sbjct:   886 ATIELILVEDVKVSPTDVSIYNHPDVQAELFIKEGSGYFFINTSVASVVSVALEETQGI- 944

Query:   849 CLQLMLSPKGLGTALVTVYDVGLAPPRAASALVQVADVDWIKIMSGEEISLMEGRSQSID 908
                +++ P   G+  V V+D+ LA P  A A V V+D+  + +   +++ +  G++    
Sbjct:   945 ---VLVHPLLPGSVTVMVHDLCLAFPAPAKAEVYVSDIQELYVRVVDKVEI--GKTVKAF 999

Query:   909 LMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMSSFKIMAKHLGI 968
             +    D    F +  +  MD+++     IV L+      + D      ++F +    +G 
Sbjct:  1000 IRVLDDSKKPFLAKYFAVMDLKLRAASQIVSLVP--LGEALDD---HTAAFLVHGIAIGQ 1054

Query:   969 TTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYT 1028
             T+L  S   + G  I S P ++EV+ P R+ P  + L+ GA   +T +GGP     + ++
Sbjct:  1055 TSLTASVADRRGQRINSAPQQIEVFPPFRLLPRKVTLIIGAMIQITSEGGPQPQSNIIFS 1114

Query:  1029 STDEEIATIHRSSGQLFAISPGNTTLIATVFG----NGD-VVICQAFSSVKVGVPSSVTL 1083
              +DE+IA+++ S+G +  ++ GN T+   V       G  VV+ Q    V+V   ++V +
Sbjct:  1115 ISDEKIASVN-STGLIRGVAIGNGTVTGVVQAVDAETGKLVVVSQDKVEVEVVQLTAVRI 1173

Query:  1084 NAQSDQLAVGHEMPIHPL-FPEGDV-FSFYELCRN--YNWTIEDEKILGFWLGDQLHSEN 1139
              A   ++  G +MP++ +        FSF        ++W++     L            
Sbjct:  1174 RAPITRMKTGTQMPVYVMGITSSQTPFSFGNAVPGLTFHWSVTKRDTL------------ 1221

Query:  1140 QDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSC-DFVSDS-YSESRIYS 1197
              D+++  S E  F   L  K   F   +YGR  GRT +       D  ++  Y+ +R  S
Sbjct:  1222 -DVKTRHS-EASFQ--LPAK-YNFAMDVYGRVKGRTGLKVVVKVLDPAANQFYNMARELS 1276

Query:  1198 ASISLSVVSDLPL 1210
               I + V   L L
Sbjct:  1277 DEIQIQVFEKLHL 1289

GO:0005635 "nuclear envelope" evidence=IEA

UNIPROTKB\|F1SPG4 NUP210 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050208-132 nup210 "nucleoporin 210" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0288545 nup210 "nucleoporin 210" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8TEM1 NUP210 "Nuclear pore membrane glycoprotein 210" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1859555 Nup210 "nucleoporin 210" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MPW7 NUP210 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1924845 Nup210l "nucleoporin 210-like" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5VU65 NUP210L "Nuclear pore membrane glycoprotein 210-like" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|69339 Nup210 "nucleoporin 210" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020663001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (1952 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1380
pfam02368		79	pfam02368, Big_2, Bacterial Ig-like domain (group	6e-04
pfam02368		79	pfam02368, Big_2, Bacterial Ig-like domain (group	0.001

>gnl\|CDD\|217000 pfam02368, Big_2, Bacterial Ig-like domain (group 2)	Back alignment and domain information

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 1005 LVPGASYMLTLKGGPTVGVYVDYT--STDEEIATIHRSSGQLFAISPGNTTLIATVFGNG 1062
            L+ GA+  L     P+       T  S++  IAT+  S+G + A++ G  T+ AT  G+ 
Sbjct: 14   LLKGATLQLGATVLPSDASNGKVTWSSSNTSIATVSGSTGLVTALAKGTATITATS-GDN 72

Query: 1063 DVVIC 1067
                 
Sbjct: 73   QSATY 77

This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins. Length = 79

>gnl\|CDD\|217000 pfam02368, Big_2, Bacterial Ig-like domain (group 2)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1380
KOG1833		679	consensus Nuclear pore complex, gp210 component [N	100.0
KOG1833		679	consensus Nuclear pore complex, gp210 component [N	99.86
smart00635		81	BID_2 Bacterial Ig-like domain 2.	98.16
PF02368		79	Big_2: Bacterial Ig-like domain (group 2); InterPr	97.95
TIGR00864		2740	PCC polycystin cation channel protein. Note: this	97.75
PF02368		79	Big_2: Bacterial Ig-like domain (group 2); InterPr	97.74
smart00635		81	BID_2 Bacterial Ig-like domain 2.	97.6
COG5492		329	Bacterial surface proteins containing Ig-like doma	95.84
COG5492		329	Bacterial surface proteins containing Ig-like doma	93.62
PF13629		72	T2SS-T3SS_pil_N: Pilus formation protein N termina	87.83
TIGR00864		2740	PCC polycystin cation channel protein. Note: this	84.99

>KOG1833 consensus Nuclear pore complex, gp210 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=4.7e-37  Score=357.70  Aligned_cols=646  Identities=21%  Similarity=0.256  Sum_probs=466.8

Q ss_pred             EEecCceEEEEEecCCcccccc-cceeEEEEEecCCcccccCceeeeeeecCCCcEEEEEecccceEEEEEEEcccCCCC
Q 000636          559 YLVPRTHVDVLLVGGPEPWEED-VDFIETFEIFNGKHNHASDGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDD  637 (1380)
Q Consensus       559 ~L~~GSs~~~~~~GGP~pw~~e-~~~~~~~~~~~e~~~~~~~~~~~~~v~~~~~~~~~V~C~~lGe~~l~~~vgN~~~~~  637 (1380)
                      ++.+||+..+...|||++|..| -.++++   . .+  ..+  .+.  ...+.-..|+..|+.+|....  +.||..+..
T Consensus         2 ~~~~~st~~~~~~~~p~r~~~e~~~~ik~---~-t~--~~~--~~~--~~~~~~v~~~is~q~v~~~~~--~~~nl~~i~   69 (679)
T KOG1833|consen    2 GRKYGSTPRHIEVGGPFRWLPEKMTLIKT---M-TQ--VMS--EGG--PQPQSIVHFSISNQTVAVVNR--RGGNLGKIV   69 (679)
T ss_pred             cccccCccceEEcCCCcccccchhHHHHH---H-HH--Hhh--ccC--CccceEEEEeecchhhhhhhh--hcccccccc
Confidence            3567999999999999999765 333332   0 00  001  111  011223369999999998877  889999999


Q ss_pred             CCCCeeEEEEEEEEEecCCeEEEEEccCcchhhhhccccccCCCCCceeeeeEEeeCCCeEEEEEEEEcCCCCeEeecCC
Q 000636          638 HPLPAVAEVSLSVTCSFPASIALLVDEPVNERKVIQTAAQADRSPGRIRVTPVTVANGQTIRIAAVGISSSGEAFANSSS  717 (1380)
Q Consensus       638 np~Pav~~~~~~v~C~~P~~l~l~v~~P~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~l~v~vfD~~Gr~f~n~SS  717 (1380)
                      +|.|++.++++.++|..|..+.+...+|.+++..++......|         +++.|+....+.....-+.+..|.|.+-
T Consensus        70 ~~~~~h~~i~~~~~~~~~~~v~~~~~~q~~~l~~vr~~~~a~r---------~~van~~~~~va~v~~s~~~~~fSns~~  140 (679)
T KOG1833|consen   70 GPAPVHGEIQTSNECTGPVIVFSQDEVQIEQLRAVRILAAATR---------LIVANGMPVYVAGVTSTQTPFSFSNSNP  140 (679)
T ss_pred             ccceeehheeeeecccCceEEEEeccchhhHHHHHHHHhhccc---------eEEecCceEEEEEeecccCcceecCCCc
Confidence            9999999999999999999999998777776666664433322         3457887777776555555555555544


Q ss_pred             ceEEEEEcCCCcceEeecccccccCCCcceEEEEEeeeceeEEEEEEEeeEeeccCCccccccccccccceeeeEEEEEe
Q 000636          718 LCLGWELSNCDGLAYWDDAYGSQKSASSWERFLVLQNESGLCVVRATASGFCDAKDGHHSAQLLEISESFLTDAVRLQLV  797 (1380)
Q Consensus       718 L~~~W~~s~~~~la~~~~~~~~~~~~s~~~~~~~l~~~~G~~~I~at~~gy~~~~l~~~~~~~~~~~~~~l~~siel~lv  797 (1380)
                      +.+          -||+.+   +....+|+++..+++..|.+..+ .+.+.....             ...         
T Consensus       141 ~~~----------~~w~~~---~~t~~~~e~~~~~~~~~~~~~~~-~v~~~~~g~-------------~s~---------  184 (679)
T KOG1833|consen  141 LLT----------FHWSMS---DVTDLVPEHSEVFLQLPGEHNFA-VVHTKAAGR-------------TSI---------  184 (679)
T ss_pred             hhe----------eecchh---hhhccccccchHHHhcccceeeE-EEeeecccc-------------cee---------
Confidence            321          234332   23336678788777888888777 554432110             000         


Q ss_pred             eeeEEcCceeEEeeCCcceEEEEEccceeEEEEEECCcceEEEEecCCcceeeeEEEeeccceEEEEEEEEcccCCCcce
Q 000636          798 STLRVNPEYNLLFFNPDAKANLSIAGGSCFLEAAVNDSQVVEVIQAPEGLRCLQLMLSPKGLGTALVTVYDVGLAPPRAA  877 (1380)
Q Consensus       798 ~~v~v~P~~~~i~n~p~~~~~l~i~gGSG~~~~~~~~~~Ia~v~~~~~g~~~~~~~vtp~~~G~~~v~v~D~cl~~~~~a  877 (1380)
                       .+++.|     +|  .....+...|||+.++...+++....+...   +.+.+-++.|++.|.++|++.|-|+.+ .++
T Consensus       185 -~~tl~~-----~~--vs~~~~~~t~gs~~~e~~~l~t~~s~v~~p---l~q~~~vl~Pkn~Gq~kl~v~d~g~~~-~sa  252 (679)
T KOG1833|consen  185 -KVTLHC-----MN--VSSGQFEGTGGSLSDEVQILMTTGSDVGFP---LIQAHDVLNPKNNGQVKLRVSDAGLVG-QSA  252 (679)
T ss_pred             -EEEEEE-----ee--cccCccccccceeEEEEEeeecccccccch---hhcHHHhcCCCCCceEEEEEecccccc-ccc
Confidence             112222     11  222237889999999999888877766432   446778899999999999999999999 799


Q ss_pred             eEEEEEeeeeEEEEEecceEEEecCcEEEEEEEEeecCCCEEecCCceeeEEEEEeeccEEEEEeCCCCCCCCCCccccc
Q 000636          878 SALVQVADVDWIKIMSGEEISLMEGRSQSIDLMAGIDDGSTFDSFQYTYMDIRVHIEDHIVELIDDDATSSPDGGYFSMS  957 (1380)
Q Consensus       878 ~a~V~V~di~~I~v~~~~~i~vevG~tv~~~v~v~d~~g~~f~~~~~~~m~l~l~~~~~iv~l~~~~~~s~~~~~~~~~~  957 (1380)
                      .|.++|.|+++|+++.+..  +++|.++++++..-+++|.+|+.++.++|+.+++.....+...+           +...
T Consensus       253 ~al~rvad~~~l~id~egl--v~~G~s~~vtll~~~~~g~~Feveq~~l~d~qvd~~~lhV~s~~-----------~sg~  319 (679)
T KOG1833|consen  253 DALVRVADIHSLAIDAEGL--VEIGASVEVTLLAQDETGASFEVEQRPLADAQVDASNLHVISTK-----------VSGL  319 (679)
T ss_pred             chheeccCccEeeeccccc--ccCCceEEEEEEeecccCCccccccccccccccccccCcccccc-----------cccc
Confidence            9999999999999998766  89999999999999999999999999999999965444555533           3357


Q ss_pred             eEEEEEeeEEEEEEEEEEEccCcceEEeecEEEEEeCCCeeecCeeEEccCCEEEEEEEeCCccceEEEEeecCccEEEE
Q 000636          958 SFKIMAKHLGITTLYVSARQQSGHEILSQPIRVEVYAPPRIHPHDIFLVPGASYMLTLKGGPTVGVYVDYTSTDEEIATI 1037 (1380)
Q Consensus       958 ~~~V~g~s~G~ttL~as~~~~~G~~i~S~~~~I~VfpPLrl~P~~~tLv~Gs~~ql~~~GGP~p~~~i~fss~n~~Va~V 1037 (1380)
                      +|.++|.++|.+++++++++..|+...|.++.+|+|.|+++.|+.++|+||+++|++++|||+|.....|+..|..+|.+
T Consensus       320 ~~tl~A~~lGtttl~vs~~~S~G~vls~~Th~vqlysp~~l~p~~l~l~PGsk~~l~~eGGp~p~~~ld~~~~~n~~A~i  399 (679)
T KOG1833|consen  320 RYTLRANSLGTTTLSVSSKSSSGRVLSSRTHTVQLYSPIFLQPKRLTLIPGSKFQLEVEGGPQPTPPLDFSLNNNMIASI  399 (679)
T ss_pred             eeEEEeeccccEEEEEEEecccceEeeccceeEEEeccccCCcceEEEecCCceEEEEccCCCCCCcccceecccceeec
Confidence            99999999999999999999899999889999999999999999999999999999999999999999999999999999


Q ss_pred             EccceEEEEEeeEeEEEEEEEEccCceEEEEEeEEEEEEceeeEEEEeecceeEeCcEEeEEEecc-----CCCeeeece
Q 000636         1038 HRSSGQLFAISPGNTTLIATVFGNGDVVICQAFSSVKVGVPSSVTLNAQSDQLAVGHEMPIHPLFP-----EGDVFSFYE 1112 (1380)
Q Consensus      1038 ~~~sG~Vta~s~G~t~It~~~~~~~g~~v~~~~~~V~V~~l~~v~I~~~~~~l~~g~~~p~~~~g~-----~g~pfsf~~ 1112 (1380)
                      +. ++.+++.+.|+++|.++..-.+|. +|++++-+.|..+-|+.+.+....+.+|..+.++..+.     +..||-|+.
T Consensus       400 e~-s~~l~~~apg~ttiy~~~ivG~ga-v~~qti~lsv~glPgi~l~aas~~v~tgdrvtl~~v~~spg~ede~~f~fi~  477 (679)
T KOG1833|consen  400 EP-SILLTSSAPGYTTIYGTVIVGDGA-VTEQTIVLSVAGLPGIILSAASRKVETGDRVTLRLVGVSPGAEDEEPFAFIK  477 (679)
T ss_pred             cc-ccceEeeccCCcceeeEEEEecCe-eEEEEEEeeecCcCceeeecccceeecCceEEEEEEeecCCccccchhhhcc
Confidence            98 999999999999999954333665 46888889999999999999999999999999988763     347777766


Q ss_pred             eeeE--EEEEEcCCceEEEEecccccccccccccccccceeecccccccccccEEEEEEeeceEEEEEEEEEEeccCCCC
Q 000636         1113 LCRN--YNWTIEDEKILGFWLGDQLHSENQDLQSAASGEIQFSNDLDKKELGFIKTLYGRSAGRTDVATTFSCDFVSDSY 1190 (1380)
Q Consensus      1113 ~~l~--f~Ws~sd~~vl~~~~~~~~~~e~~~~~~~~~g~i~~~~~~~~~~~~f~~~v~~~~~G~t~I~v~v~~~~~~~g~ 1190 (1380)
                      ....  -+|.-. + .+.+..                                         ++           +..+ 
T Consensus       478 ~vvpv~~~~~e~-p-~Lnlsa-----------------------------------------r~-----------~~t~-  502 (679)
T KOG1833|consen  478 AVVPVKSHRNEV-P-LLNLSA-----------------------------------------RK-----------HFTG-  502 (679)
T ss_pred             ceeEEeeccCcC-c-ccChhh-----------------------------------------hc-----------cccc-
Confidence            6532  234400 0 001100                                         00           0011 


Q ss_pred             ccceeeeeeEEEEEEecCccccccCceeeeCCCCCccccc---CC-ccccccccCCCCceeEEEEEEeeccccccccCCC
Q 000636         1191 SESRIYSASISLSVVSDLPLALGIPVTWVLPPHYTSTSLL---PS-SSESHGQWDSQSHKGSIVYSLLKFCSEKNEAASK 1266 (1380)
Q Consensus      1191 ~~~~~~~~~i~i~V~~~L~L~~~~~~~~~l~p~~~~~~lL---pn-~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~ 1266 (1380)
                       ....|+++-.+++...|.+         +.|.......+   +| +++.-+-|..   + +.  .+   |.+    ..+
T Consensus       503 -rl~tF~t~t~~~~e~gl~v---------~~~~~din~~~v~~dN~~l~ktt~~lq---A-~l--~~---~~d----~tS  559 (679)
T KOG1833|consen  503 -RLSTFTTETTITVEDGLSV---------VQPEMDINTVRVAPDNSQLKKTTAWLQ---A-SL--SV---ESD----FTS  559 (679)
T ss_pred             -ccCcceecceeEEeccceE---------EecccCCccceecCCCccceeEeeccc---c-eE--EE---eec----ccc
Confidence             2233567777777777776         33332222222   35 5655555555   2 22  22   431    223


Q ss_pred             Cc-EEecCCceeecCCcceEEEEEEEecC-CceEEEEEEEEeeeeEEEEecC-------CCceeEEeeeCcEEEEEEEEE
Q 000636         1267 DD-ISIDGDTIKTTSSNHLACIQAKDRSS-GRIEIASCVRVAEVAQIRISNR-------YPLNVIHLAVGAECEIPISYY 1337 (1380)
Q Consensus      1267 ~~-v~vd~g~l~t~~~~g~a~i~v~~~~~-G~qti~~~V~V~~v~~l~i~~~-------~~~~l~~lpvG~~~~l~v~~~ 1337 (1380)
                      .+ +.+|+-.+ +-...+.+.+.+.+... -..+....|.+..|..+.....       +...++.|+.|......+.++
T Consensus       560 ~ia~~~~~s~v-~q~r~ks~~ip~h~~dsaile~~~~~v~~l~vt~l~vhg~ta~~~~~ens~~~FLnt~~~~pv~yv~~  638 (679)
T KOG1833|consen  560 RIAISADGSLV-TQGREKSAAIPVHNVDSAILETVLIPVTVLRVTSLDVHGTTALKSAFENSPLIFLNTGAADPVKYVPQ  638 (679)
T ss_pred             ceEeecchhhh-hccccCCCCCcccccchhhheeecceeeeeeeEeecccchhhhhhhhcCCceEEeecccccceEEeec
Confidence            32 22233333 44555666666666555 3566777788888887766532       256789999999999999999


Q ss_pred             cCCCcccccccceeEEEEEecccceEEEEeec
Q 000636         1338 DALGTPFHEAHNVILYHAETNYHDVVSINYTL 1369 (1380)
Q Consensus      1338 D~~G~~F~~~~~~~~l~~~~nr~dl~~i~~~~ 1369 (1380)
                      |..|++.-...|+.  ++++++.+|+.+.+..
T Consensus       639 ~arG~al~~~sns~--n~rph~~vl~p~la~~  668 (679)
T KOG1833|consen  639 EARGVALVSLSNST--NHRPHLLVLIPYLACC  668 (679)
T ss_pred             cccCceeeeeccCC--CCCCcceEEeChhhcc
Confidence            99999999888844  9999999999888774

>KOG1833 consensus Nuclear pore complex, gp210 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>smart00635 BID_2 Bacterial Ig-like domain 2	Back alignment and domain information

>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins	Back alignment and domain information

>TIGR00864 PCC polycystin cation channel protein	Back alignment and domain information

>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins	Back alignment and domain information

>smart00635 BID_2 Bacterial Ig-like domain 2	Back alignment and domain information

>COG5492 Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]	Back alignment and domain information

>COG5492 Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]	Back alignment and domain information

>PF13629 T2SS-T3SS_pil_N: Pilus formation protein N terminal region	Back alignment and domain information

>TIGR00864 PCC polycystin cation channel protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1380
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
3ncx_A		189	Intimin, intimin adherence protein; intimin TIR, c	2e-11

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 73.7 bits (180), Expect = 3e-13
 Identities = 113/754 (14%), Positives = 205/754 (27%), Gaps = 254/754 (33%)

Query: 7   ETDGSSHH---LLHVPLKDSPLSDCGGLCGDLDVQ-IELENSGAFSDLYVVKGIGIGHEM 62
           ET    +    +L V               + D + ++       S   +   I     +
Sbjct: 10  ETGEHQYQYKDILSVFEDA--------FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 63  VSVHLLETEFMHMADSILLTVAEAMSIEPPSPVFVLVGAALQYKLKVIRGNIPQVVALPS 122
                L   F       LL+       +    V   V   L+   K +   I      PS
Sbjct: 62  SGTLRL---F-----WTLLS-------KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 123 PHHRWSVSNSSVAQVDN-------------MMGLTQALRLGQTA--VIVEDTRVAGHTQV 167
              R  +        DN              + L QAL   + A  V+++    +G T  
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-W 165

Query: 168 SSLNVVLPDTL---------WLYISPLSISGDPVEGTKAIPSVARWFVVSGFQYLIQMKV 218
            +L+V L   +         WL +   +     +E  + +                    
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-------------LYQIDPN 212

Query: 219 FSQGPGSQEIYITESDDIKLSDNQSECWRTFSMPNDL-VLKHGWRNSRILKA---TSQGL 274
           ++               I+    +    + +   N L VL +   N++   A   + + L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--ENCLLVLLNVQ-NAKAWNAFNLSCKIL 269

Query: 275 GKLTASLTYFSGLHDTKEVLKVVQEIMVCDRIKFSLDQTNGVSESILLPWAPGIYQEVEL 334
             LT   T F  + D           +    +  + D+     +S+LL +     Q++  
Sbjct: 270 --LT---TRFKQVTDFLSAATTTHISLDHHSMTLTPDE----VKSLLLKYLDCRPQDLPR 320

Query: 335 MATGGCAKTSSDYKWFSSDMATVSITASGVVQAKKPGKATVKVVSIFDSFNYDEI--VIE 392
                            +      I  S      + G AT      +   N D++  +IE
Sbjct: 321 EVLTT------------NPRRLSIIAES-----IRDGLATWDN---WKHVNCDKLTTIIE 360

Query: 393 VSTPSSMVMLRNF-PVETVVGSHLQAAVTMKTLNGAYFYRCDAFSSSVN---------WK 442
            S       L    P E             +      F R   F  S +         W 
Sbjct: 361 SS-------LNVLEPAE------------YR----KMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 443 AGS--ESFIVLN------ATKKQP----------FLDKLGTVEHDISLHGPPCSWAHLYA 484
                +  +V+N        +KQP          +L+    +E++ +LH           
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH----------- 446

Query: 485 SSSGRTML-HATLSKDYQHFDRSFDGPIVLKASSRIAAYPPLIVQQAGDGSGFGGYWFN- 542
               R+++ H  + K +   D                  PP +     D      Y+++ 
Sbjct: 447 ----RSIVDHYNIPKTFDSDDLI----------------PPYL-----D-----QYFYSH 476

Query: 543 ----LGQSETTTQMEALDKLYLVPRTHVDVLLVGGPEPWEEDVDFIETFEIFNGKHNHAS 598
               L   E   +M     ++L                   D  F+E       K  H  
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFL-------------------DFRFLE------QKIRH-- 509

Query: 599 DGVHIHVVSGSSKNLYGVFCQTLGTFELVFKRGNLVGDDHP------------LPAVAEV 646
                     ++ N  G    TL   +  +K    + D+ P            LP + E 
Sbjct: 510 --------DSTAWNASGSILNTLQQLKF-YKP--YICDNDPKYERLVNAILDFLPKIEEN 558

Query: 647 SLSVTCSFPASIALLVDEPVNERKVIQTAAQADR 680
            +    +    IAL+ +   +E    +   Q  R
Sbjct: 559 LICSKYTDLLRIALMAE---DEAIFEEAHKQVQR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3ncx_A Intimin, intimin adherence protein; intimin TIR, cell adhesion; 2.60A {Escherichia coli O157} PDB: 2zqk_A 3ncw_A 2zwk_A Length = 189	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1380
d1f00i2		89	b.1.14.1 (I:753-841) Intimin {Escherichia coli [Ta	1e-05

>d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId: 562]} Length = 89	Back information, alignment and structure


class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Invasin/intimin cell-adhesion fragments
family: Invasin/intimin cell-adhesion fragments
domain: Intimin
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 315 GVSESILLPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITA-SGVVQAKKPGKA 373
           G      LP     Y +V L A+G     +  Y W S++ A  S+ A SG V  K+ G  
Sbjct: 13  GTGVKGKLPTVWLQYGQVNLKASG----GNGKYTWRSANPAIASVDASSGQVTLKEKGTT 68

Query: 374 TVKVVS 379
           T+ V+S
Sbjct: 69  TISVIS 74

PyMOL of d1f00i2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1380
d1f00i2		89	Intimin {Escherichia coli [TaxId: 562]}	98.5
d1f00i2		89	Intimin {Escherichia coli [TaxId: 562]}	97.05
d1cwva4		91	Invasin {Yersinia pseudotuberculosis [TaxId: 633]}	91.74
d1f1sa2		78	Hyaluronate lyase precatalytic domain {Streptococc	82.74

>d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Invasin/intimin cell-adhesion fragments
family: Invasin/intimin cell-adhesion fragments
domain: Intimin
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=2.2e-07  Score=64.07  Aligned_cols=67  Identities=36%  Similarity=0.518  Sum_probs=53.6

Q ss_pred             EECCCCCEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEE-CCEEEECCCCEEEEEEEECCCCCCEEEEEEEEECC
Q ss_conf             2074573258999993158899750899826951599910-71698526744999999324876132599999653
Q 000636          322 LPWAPGIYQEVELMATGGCAKTSSDYKWFSSDMATVSITA-SGVVQAKKPGKATVKVVSIFDSFNYDEIVIEVSTP  396 (1380)
Q Consensus       322 lp~~~~~~q~~~L~a~GGsg~~~~~y~WsSsn~~VatV~~-~Gvvta~~~G~t~V~a~d~~n~~~~~~~~V~V~~p  396 (1380)
                      +|.....+.+++|.++||.+    .|.|+|+|+.||+|+. .|++++.+.|+++|+|.+..+.    .+...|..|
T Consensus        20 ~~~~~~~~~~~~l~~~~~~~----~~twsSsd~~VAtVd~~~G~vta~~~G~a~Itat~~~g~----~at~tvt~~   87 (89)
T d1f00i2          20 LPTVWLQYGQVNLKASGGNG----KYTWRSANPAIASVDASSGQVTLKEKGTTTISVISSDNQ----TATYTIATP   87 (89)
T ss_dssp             CCSEEETTCEEECCEESTTS----CEEEEESCTTTEEECTTTCEEEECSSSCEEEEEEETTTE----EEEEEECCC
T ss_pred             CCCEEEEEEEEEEEECCCCC----CEEEEECCCCEEEEECCCCEEEEEEEEEEEEEEEECCCC----EEEEEEECC
T ss_conf             77356620589987736897----289997999999997898899996608999999979999----999999857

PyMOL of d1f00i2

>d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1cwva4 b.1.14.1 (A:796-886) Invasin {Yersinia pseudotuberculosis [TaxId: 633]}	Back information, alignment and structure

>d1f1sa2 b.1.18.2 (A:171-248) Hyaluronate lyase precatalytic domain {Streptococcus agalactiae [TaxId: 1311]}	Back information, alignment and structure