Citrus Sinensis ID: 000637

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------138
MMLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPSESNESADLEWLSQLYGERKKKRTTIVGKGGDKGEGSSGSSLENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACEGKGGGSGASGFEEFPSSPKSPLSPKRSWQAREQNTEFKRGDRDGMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFITSTSDDQGSASFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGKNKDACDNQANWKKSDSWDKGKKIIGNSTSSWGDKTAEKNEPDSWGKGKDGSSGSKSDWNSSALATENPTVSWGNASGGWTQQKGGNMDERSGWKKDDSGNQDQRSGWNKPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLAKQDGGSSWGKQDRGSSWGKQDEGSSWSKRDGGSSWGKQDGGSSLAKQDGGSSWGKQDGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGGSSWSKEPDQQHRKNGGSSWGNRDGGSSWSKQTDQQDNQEKPLESDGGRGSGGRWGQGGGQGGGQEVSDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCNWNSGSSDGDGNNGSGGWGKKSNWNSGSSGAGESKDTDWNKKSNLNCGSSDGDGNNSSGWDKKGNWNAGSSGDGESKDTDWNKKCNWNSGSNDGDGNNGSGWGKKSNWNSGSNVAGESNDSNWAKKGNWNSGSDDANQESSWGKKQGNWNSGSRDGHQESSWGKKSDWNSRSEDQPEPFNNRGSGNFRGRGGFRGRGDSDRGGFGGRGRTNRGGYGGRGRFDREGFGGRGGSDRGGFGGRGSSDRGGFGGRGRGRRDQGGGWNNNDSGDYKSFDSSQGVKNGGEWSRSNDGAGSWSQGGGTWKSGNSGASSQDGGWSSQGSGWNNSNTTNEVKGLSDQGGGWNKGAGGSAQAGGWGRQGSGWSSGTSTGNRGSNDSSIANDVKGPNDQVVGRNKGSNGSAQSGGWGNQGSGWSSGTGSGNKGSNDSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDSGNRGSNSDQPKSWNQSSVATDGGRSKDAGEGSSRGWGKTAGSSWEKGNDGSGKGGW
ccccccEEEEEEEcccEEEccccccHHHHHccccccccccccccHHEEEEccccccEEEEccccccccccccccccccccEEEEEEEcccccEEEEEEEEccccEEEcccccccccEEEEEccccccccccccEEEEccccccccccccEEEEcccccccccEEEEEEEcEEEEEEccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccEEEEEEEccccEEEEEcccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccEEEEEEEEHHEEHccccccHHHHHHcccccccccccHHHHEEEcccccccEEEEEEEccccccccccccccccEEEcEEEEEccccEEEEEEEEcccEEEEEEccccccEEEEEcHHHHHcccccccEEEEEccccEEEEccEEEEEEcccccccEEEEEEEEEEEEEEEccEEccccEEEEEcccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEcEEEEEEEcccccEEEEEEEccccEEEEEEEcccEEEEEcHHHEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mmlkdgylykkvsidslscwgvvpseeellkfqpsesnesaDLEWLSQLYGERkkkrttivgkggdkgegssgsslensFELYELVCFGRKDFGLIVGMEKDDHYKIlkegsegpavvTVERrtlkngpfdmkftALDQSMKVIslndtarvsegpskdrqGIVKKIYRGILFiydenetenggyfcsksqhcektkveacegkgggsgasgfeefpsspksplspkrswQAREQNtefkrgdrdgmfAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGehlaevrgksfitstsddqgsasfkpfdplgagggsgdwmsaattsaegdrwnaggasagrsswpsfpvvgtslhaesnpanafgsgdngankdeedsawgskVNAIQNSSWGlaaaegknedcWNKAAVKNIesnngayggwgkedagsslqdsqdnwgknkdacdnqanwkksdswdkgkkiignstsswgdktaeknepdswgkgkdgssgsksdwnssalatenptvswgnasggwtqqkggnmdersgwkkddsgnqdqrsgwnkpktfgadvgsswnkqdgicssdvqdggsswakqdggsswgkknggslmgkqdggsswgkqdggsslgkqdggsswgkqdgrsslakqdggsswgkqdrgsswgkqdegsswskrdggsswgkqdggsslakqdggsswgkqdggsslgkqdggsswskqdggsswgkqdggsswgkqdggsswgkqdggsswskepdqqhrknggsswgnrdggsswskqtdqqdnqekplesdggrgsggrwgqgggqgggqevsdqygrgsfdqgsekgtggmgdqgngwnrrdkgtdwnkkcnwnsgssdgdgnngsggwgkksnwnsgssgageskdtdwnkksnlncgssdgdgnnssgwdkkgnwnagssgdgeskdtdwnkkcnwnsgsndgdgnngsgwgkksnwnsgsnvagesndsnwakkgnwnsgsddanqesswgkkqgnwnsgsrdghqesswgkksdwnsrsedqpepfnnrgsgnfrgrggfrgrgdsdrggfggrgrtnrggyggrgrfdregfggrggsdrggfggrgssdrggfggrgrgrrdqgggwnnndsgdyksfdssqgvknggewsrsndgagswsqgggtwksgnsgassqdggwssqgsgwnnsnttnevkglsdqgggwnkgaggsaqaggwgrqgsgwssgtstgnrgsndssiandvkgpndqvvgrnkgsngsaqsggwgnqgsgwssgtgsgnkgsndsnisnkgpndqgggwnkgsggsaqsgawgnqgsgwnggtdsgnrgsnsdqpkswnqssvatdggrskdagegssrgwgktagsswekgndgsgkggw
mmlkdgylykkvsidslscWGVVPSEEELLkfqpsesnesadLEWLSQLygerkkkrttivgkggdkgegssgssleNSFELYELVCFGRKDFGLIVGMEKDDHYKIlkegsegpavvtvERRTLKNGPFDMKFTALDQSMKVISLNdtarvsegpskdrqgivKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACEGKGGGsgasgfeefpsspksplspkrswQAREQNtefkrgdrdgmfaVGQTlrirvgplKGYLCRVLAVRYSDvtvkldsqqkiltvkgehlaevrgksfitstsddqgsaSFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGknkdacdnqanwkksdswdkgkkiignstsswgdktaeknepdswgkgkdgssgskSDWNSSALAtenptvswgnasggwtqqkggnMDERSGWKKddsgnqdqrsgwnkPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSslgkqdggsswgkqdgrsslakqdggsswgkqdrgsswgkqdegsswskrdggsswgkqdggsslakqdggsswgkqdGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGgsswskepdqqhrknggsswgnrdGGSSWSKQTDQQDNQEKplesdggrgsggrWGQGGGQGGGQEVSDQYGRGSFDqgsekgtggmgdqgngwnrRDKGTDWNKKcnwnsgssdgdgnngsgGWGKKSNWNSGSSGAGESKDTDWNKKSNLNCGSSDGDGNNSSGWDKKGNWNAGSSGDGESKDTDWNKKCNWnsgsndgdgnngsGWGKKSNWNSGSNVAGESNDSNWAKKGNWNSGsddanqesswgkkqgnwnsgsrdghqesswgkksdwnsrsedqpepfnnrgsgnfrgrggfrgrgdsdrggfggrgrtnrggyggrgrfdregfggrggsdrggfggrgssdrggfggrgrgrrdqgggwnnndsgdyksFDSSQGVKNGGEWSRSNDGAGSWSQGGGTWKSGNSGASSQDGGWSSQGSGWNNSNTTNEVKGLSDQGGGWNKGAGGSAQAGGWGRQGSGWSSGTSTGNRGSNDSSIANDVKGPNDQVVGRNKgsngsaqsggwgnqGSGWSSGTGSGNKGSNDSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDSGNrgsnsdqpkswnqssvatdggrskdagegssrgwgktagsswekgndgsgkggw
MMLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPSESNESADLEWLSQLYGERKKKRTTIVgkggdkgegssgssLENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVeacegkgggsgasgfeefpsspksplspkRSWQAREQNTEFKRGDRDGMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFITSTSDDQGSASFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGKNKDACDNQANwkksdswdkgkkiiGNSTSSWGDKTAEKNEPdswgkgkdgssgsksdwnssALATENPTVSWGNASGGWTQQKGGNMDERSGWKKDDSGNQDQRSGWNKPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDggsswgkknggsLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLAKQDGGSSWGKQDRGSSWGKQDEGSSWSKRDGGSSWGKQDGGSSLAKQDGGSSWGKQDGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGGSSWSKEPDQQHRKNGGSSWGNRDGGSSWSKQTDQQDNQEKPLESDggrgsggrwgqgggqgggqEVSDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCnwnsgssdgdgnngsggwgkksnwnsgssgAGESKDTDWNKKsnlncgssdgdgnnssgWDKKGNWNAGSSGDGESKDTDWNKKCnwnsgsndgdgnngsgwgkksnwnsgsnVAGESNDSNWAKKGNWNSGSDDANQESSWGKKQGNWNSGSRDGHQESSWGKKSDWNSRSEDQPEPFnnrgsgnfrgrggfrgrgdsdrggfggrgrtnrggyggrgrfdregfggrggsdrggfggrgssdrggfggrgrgrrdqgggwnnndSGDYKSFDSSQGVKNGGEWSRSNDGAGSWSQGGGTWKSGNsgassqdggwssqgsgwnnsnttnEVKGLSDQgggwnkgaggsaqaggwgrqgsgwssgtstgnrgsndssIANDVKGPNDQVVGRNKgsngsaqsggwgnqgsgwssgtgsgnkgsndsnisnkgPNDQgggwnkgsggsaqsgawgnqgsgwnggTDSGNRGSNSDQPKSWNQSSVATDGGRSKDAGEGSSRGWGKTAGSSWEKGNDGSGKGGW
*****GYLYKKVSIDSLSCWGVVP********************WL********************************SFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVI*****************GIVKKIYRGILFIYDENETENGGYFCSK********************************************************GMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVR***************************************************************************************************I**SSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGW********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
*MLKDGYLYKKVSIDSLSCWGVVPSEEEL**************************************************FELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVE************FTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHC********************************************************VGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLA***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
MMLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPSESNESADLEWLSQLYGERKKKRTTIVGKG***********LENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKV**************************************TEFKRGDRDGMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFI********SASFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKE***************NKDACDNQANWKKSDSWDKGKKIIGNSTSS********************************LATENPTVSWGNASGGWTQ************************GWNKPKTFGADVGSSWNKQDGICSSD******************KKNGGSL****************************************************************************************************************************************************************************************************************SDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCNWNSGSSDGDGNNGSGGWGKKSNW*************DWNKKSNLNCGSSDGDGNNSSGWDKKGNWNA***********DWNKKCNWNSGSNDGDGNNGSGWGKKSNWNSGSNVAGESNDSNWAKKGNWNS***********************************************FNNRGSGNFRGRGGFRGRGDSDRGGFGGRGRTNRGGYGGRGRFDREGFGGRGGSDRGGFGGRGSSDRGGFGGRGRGRRDQGGGWNNNDSGDYKSF***********************************************SGWNNSNTTNEVKGLSDQGGGWN******************************NDSSIANDVKGPNDQVVGRN*******************************DSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDS********************************************************
*MLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPSESNESADLEWLSQLYGERKKKRTTIVGKGG**********LENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEA*********************************************GMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFITSTSDDQGSASFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKN**S**GAY***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPSESNESADLEWLSQLYGERKKKRTTIVGKGGDKGEGSSGSSLENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACEGKGGGSGASGFEEFPSSPKSPLSPKRSWQAREQNTEFKRGDRDGMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFITSTSDDQGSASFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGKNKDACDNQANWKKSDSWDKGKKIIGNSTSSWGDKTAEKNEPDSWGKGKDGSSGSKSDWNSSALATENPTVSWGNASGGWTQQKGGNMDERSGWKKDDSGNQDQRSGWNKPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLAKQDGGSSWGKQDRGSSWGKQDEGSSWSKRDGGSSWGKQDGGSSLAKQDGGSSWGKQDGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGGSSWSKEPDQQHRKNGGSSWGNRDGGSSWSKQTDQQDNQEKPLESDGGRGSGGRWGQGGGQGGGQEVSDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCNWNSGSSDGDGNNGSGGWGKKSNWNSGSSGAGESKDTDWNKKSNLNCGSSDGDGNNSSGWDKKGNWNAGSSGDGESKDTDWNKKCNWNSGSNDGDGNNGSGWGKKSNWNSGSNVAGESNDSNWAKKGNWNSGSDDANQESSWGKKQGNWNSGSRDGHQESSWGKKSDWNSRSEDQPEPFNNRGSGNFRGRGGFRGRGDSDRGGFGGRGRTNRGGYGGRGRFDREGFGGRGGSDRGGFGGRGSSDRGGFGGRGRGRRDQGGGWNNNDSGDYKSFDSSQGVKNGGEWSRSNDGAGSWSQGGGTWKSGNSGASSQDGGWSSQGSGWNNSNTTNEVKGLSDQGGGWNKGAGGSAQAGGWGRQGSGWSSGTSTGNRGSNDSSIANDVKGPNDQVVGRNKGSNGSAQSGGWGNQGSGWSSGTGSGNKGSNDSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDSGNRGSNSDQPKSWNQSSVATDGGRSKDAGEGSSRGWGKTAGSSWEKGNDGSGKGGW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1378 2.2.26 [Sep-21-2011]
Q9STN31041 Putative transcription el no no 0.151 0.200 0.313 4e-20
O13936990 Transcription elongation yes no 0.150 0.210 0.265 2e-10
O80770989 Putative transcription el no no 0.156 0.218 0.269 3e-10
Q5ZI081079 Transcription elongation yes no 0.142 0.182 0.285 5e-09
P82003274 Prothoracicostatic peptid N/A no 0.093 0.470 0.406 2e-08
O552011082 Transcription elongation yes no 0.142 0.182 0.279 3e-08
Q9DDT51084 Transcription elongation yes no 0.145 0.184 0.280 4e-08
Q5R4051083 Transcription elongation yes no 0.145 0.184 0.269 1e-07
O002671087 Transcription elongation yes no 0.145 0.183 0.269 1e-07
>sp|Q9STN3|SPT51_ARATH Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2 Back     alignment and function desciption
 Score =  101 bits (252), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 120/236 (50%), Gaps = 27/236 (11%)

Query: 69  EGSSGSSLENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNG 128
           E ++G +    +EL++LV      FG+I+ +E ++ +++LK   + P V  V+ R +K  
Sbjct: 529 EVTTGVTKIGDYELHDLVLLDNLSFGVIIRLE-NEAFQVLKGVPDRPEVALVKLREIKCK 587

Query: 129 PFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCS 188
             + K    D+   VI++ D  RV EGPSK +QG VK IY+G+LFIYD +  E+ G+ C+
Sbjct: 588 -LEKKINVQDRYKNVIAVKDDVRVIEGPSKGKQGPVKHIYKGVLFIYDRHHLEHAGFICA 646

Query: 189 KSQHCEKTKVEACEG-------KGGGSGASGFEEFPSSPKSPLSPKRSWQ--------AR 233
           K   C         G       + GG   S +  F +    P SP R  +        + 
Sbjct: 647 KCTSC------IVVGGSRSGANRNGGDSLSRYGNFKAPAPVPSSPGRFQRGRGGGYNNSG 700

Query: 234 EQNTEFKRGDRDGMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTV 289
            ++   +    D +   G T++IR+GP KGY   V+ V+ + V V+L  + KI+TV
Sbjct: 701 GRHGGGRGRGDDSLL--GTTVKIRLGPFKGYRGPVVEVKGNSVRVEL--EMKIVTV 752
May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex.
Arabidopsis thaliana (taxid: 3702)
>sp|O13936|SPT5_SCHPO Transcription elongation factor spt5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt5 PE=1 SV=1 Back     alignment and function description
>sp|O80770|SPT52_ARATH Putative transcription elongation factor SPT5 homolog 2 OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=2 Back     alignment and function description
>sp|Q5ZI08|SPT5H_CHICK Transcription elongation factor SPT5 OS=Gallus gallus GN=SUPT5H PE=2 SV=1 Back     alignment and function description
>sp|P82003|PTSP_BOMMO Prothoracicostatic peptide OS=Bombyx mori PE=1 SV=2 Back     alignment and function description
>sp|O55201|SPT5H_MOUSE Transcription elongation factor SPT5 OS=Mus musculus GN=Supt5h PE=1 SV=1 Back     alignment and function description
>sp|Q9DDT5|SPT5H_DANRE Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1 SV=1 Back     alignment and function description
>sp|Q5R405|SPT5H_PONAB Transcription elongation factor SPT5 OS=Pongo abelii GN=SUPT5H PE=2 SV=1 Back     alignment and function description
>sp|O00267|SPT5H_HUMAN Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1378
255586801 1547 suppressor of ty, putative [Ricinus comm 0.441 0.393 0.528 1e-166
359486871 2667 PREDICTED: uncharacterized protein LOC10 0.424 0.219 0.496 1e-150
15237667 1493 kow domain-containing transcription fact 0.556 0.513 0.440 1e-150
224100723 1853 hypothetical protein POPTRDRAFT_765239 [ 0.417 0.310 0.489 1e-148
2978064031476 hypothetical protein ARALYDRAFT_487210 [ 0.523 0.488 0.448 1e-141
296085968675 unnamed protein product [Vitis vinifera] 0.254 0.52 0.722 1e-140
224109844 1697 predicted protein [Populus trichocarpa] 0.376 0.305 0.518 1e-135
449465322 1690 PREDICTED: uncharacterized protein LOC10 0.486 0.397 0.444 1e-116
356574169 1495 PREDICTED: uncharacterized protein LOC10 0.245 0.226 0.642 1e-115
356534382712 PREDICTED: putative transcription elonga 0.253 0.491 0.648 1e-112
>gi|255586801|ref|XP_002534015.1| suppressor of ty, putative [Ricinus communis] gi|223525980|gb|EEF28368.1| suppressor of ty, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  593 bits (1530), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 362/685 (52%), Positives = 441/685 (64%), Gaps = 76/685 (11%)

Query: 1    MMLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPSESNESADLEWLSQLYGERKKKRTTI 60
            +MLKDGYLYK+VS+DSLSCWGVVPSEEELLKFQPSE+ ES + EWL QLYG  KKKR   
Sbjct: 356  LMLKDGYLYKRVSVDSLSCWGVVPSEEELLKFQPSENTESDNTEWLKQLYGSPKKKRIIG 415

Query: 61   VGKGGDKGEGSSGSSLENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTV 120
            + KGG+KGE SSGS +++SFELY+LVCF RKDFG+I+GMEKDD+YKILKEG E P VVTV
Sbjct: 416  IDKGGEKGESSSGSGIQHSFELYDLVCFSRKDFGVIIGMEKDDYYKILKEGPEAPVVVTV 475

Query: 121  ERRTLKNGPFDMKFTALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENET 180
             R  +K GP DM+FTALD   K+IS+ND  +V EGP KDRQG VK+IYRGI+F++D+NET
Sbjct: 476  ARNDIKKGPSDMRFTALDHRTKIISVNDMVKVVEGPLKDRQGTVKQIYRGIIFMHDQNET 535

Query: 181  ENGGYFCSKSQHCEKTKV--EACEGKGGGSGASGFEEFPSSPKSPLSPKRSWQAREQNTE 238
            ENGGYFCSK+Q CEK K+  + C  KGG S +  FE+ PSSPKSPLSPKR WQ ++ N +
Sbjct: 536  ENGGYFCSKAQLCEKIKLSFDVCNEKGGESSSFSFEDIPSSPKSPLSPKRPWQTKDNNWD 595

Query: 239  FKRGDRDGMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVR 298
            F RG++DGMF++GQTLRIRVGPLKGYLCRVLA+RYSDVTVK+DS+ KI TVK EHL+E+R
Sbjct: 596  FNRGEKDGMFSIGQTLRIRVGPLKGYLCRVLAIRYSDVTVKVDSKHKIFTVKCEHLSEIR 655

Query: 299  GKSFITSTSDDQGSASFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASA-GRSSWPS 357
            GKS  T  S+D GS+SFKPFD LG  GGS  W   A TSA+GDRWNAGG +A     W  
Sbjct: 656  GKSSATPLSEDPGSSSFKPFDLLGTEGGSKGWTDGAGTSADGDRWNAGGITAESEDGWNK 715

Query: 358  FPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWN 417
                 TS + ES+   + G G    +  +    WG       NS+   AAA       WN
Sbjct: 716  -----TSTNIESSGGTSGGWGKAADSSKDSGDGWGQAKLDPGNSTLDAAAA-------WN 763

Query: 418  KAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGKNKDACDNQANWKKSDSWDKGKKIIG 477
            K   KN+  N      WG  D  ++ ++ QD+W  +KD  ++++ W+KS S+  G+  + 
Sbjct: 764  KE--KNVAEN--PTSSWG--DVATA-KNQQDSW-TSKDTVESRS-WEKSKSFTAGEDNLS 814

Query: 478  NST-----------SSWGDKTAEKNEP----DSWGKGKDGSSGSKSDWNSSALATENPTV 522
             ST            +W      +N+     DSWGK KD S G K DW SS    E PT 
Sbjct: 815  KSTGWNQQKSQNKWDTWRSTAEAQNKNTVQGDSWGKAKDSSVGGKVDWKSSTATAEKPTK 874

Query: 523  SWGNASGGWTQQ----------KGGNMD----------------ERSGWKKDDSGNQDQR 556
            SWGN  G W Q+            G +D                + +GW    SG+Q Q 
Sbjct: 875  SWGNEGGSWAQESKSTDEASDWMNGKVDGANQTANWSNQKNQSEDAAGWTTGGSGSQSQT 934

Query: 557  SGWNKPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGS 616
              WNKPK+ GAD GSSW KQ    + D           DGGSSW KK G S + KQ+GGS
Sbjct: 935  DNWNKPKSSGADGGSSWGKQGKPETFDA----------DGGSSWNKK-GESSLEKQEGGS 983

Query: 617  SWGKQDGGSSLGKQDGGSSWGKQDG 641
            SWGKQ G SS GKQ+GGSSW KQDG
Sbjct: 984  SWGKQGGASSWGKQEGGSSWSKQDG 1008

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359486871|ref|XP_002272748.2| PREDICTED: uncharacterized protein LOC100256388 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15237667|ref|NP_196049.1| kow domain-containing transcription factor 1 [Arabidopsis thaliana] gi|332003341|gb|AED90724.1| kow domain-containing transcription factor 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224100723|ref|XP_002311988.1| hypothetical protein POPTRDRAFT_765239 [Populus trichocarpa] gi|222851808|gb|EEE89355.1| hypothetical protein POPTRDRAFT_765239 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297806403|ref|XP_002871085.1| hypothetical protein ARALYDRAFT_487210 [Arabidopsis lyrata subsp. lyrata] gi|297316922|gb|EFH47344.1| hypothetical protein ARALYDRAFT_487210 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|296085968|emb|CBI31409.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224109844|ref|XP_002315331.1| predicted protein [Populus trichocarpa] gi|222864371|gb|EEF01502.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449465322|ref|XP_004150377.1| PREDICTED: uncharacterized protein LOC101208989 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356574169|ref|XP_003555224.1| PREDICTED: uncharacterized protein LOC100818587 [Glycine max] Back     alignment and taxonomy information
>gi|356534382|ref|XP_003535734.1| PREDICTED: putative transcription elongation factor SPT5 homolog 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1378
TAIR|locus:21799791493 KTF1 "AT5G04290" [Arabidopsis 0.534 0.492 0.4 1.5e-177
DICTYBASE|DDB_G02899011143 DDB_G0289901 "unknown" [Dictyo 0.325 0.391 0.232 3.5e-25
TAIR|locus:2040954989 AT2G34210 [Arabidopsis thalian 0.081 0.113 0.333 1e-19
DICTYBASE|DDB_G02906851081 DDB_G0290685 "unknown" [Dictyo 0.335 0.428 0.240 1e-17
UNIPROTKB|P82003274 P82003 "Prothoracicostatic pep 0.097 0.489 0.412 2.5e-18
FB|FBgn0029518193 CG13376 [Drosophila melanogast 0.084 0.601 0.335 5e-18
UNIPROTKB|Q9NZW41301 DSPP "Dentin sialophosphoprote 0.515 0.545 0.173 9.6e-18
UNIPROTKB|Q9Y871536 ESTA "Feruloyl esterase B" [Pi 0.148 0.382 0.334 2.5e-17
MGI|MGI:96696743 Krt9 "keratin 9" [Mus musculus 0.176 0.327 0.328 2e-16
FB|FBgn0038492 2112 Mur89F "Mucin related 89F" [Dr 0.482 0.314 0.186 1.2e-15
TAIR|locus:2179979 KTF1 "AT5G04290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1317 (468.7 bits), Expect = 1.5e-177, Sum P(5) = 1.5e-177
 Identities = 332/830 (40%), Positives = 427/830 (51%)

Query:    77 ENSFELYELVCFGRKDFGLIVGME-KDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFT 135
             E+S+ELY LVCF RKDFGLIVG++ K D YK+LKEG +GP VVTV ++ ++NGPFD KFT
Sbjct:   434 ESSYELYNLVCFSRKDFGLIVGVDDKGDGYKVLKEGIDGPVVVTVGKKEMQNGPFDSKFT 493

Query:   136 ALDQSMKVISLNDTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEK 195
             ALD + K IS+ND  ++S+GPS+ +QG+V+++YRGI+F+YDE+E ENGGYFC KSQ CEK
Sbjct:   494 ALDLNKKQISVNDVVKISKGPSEGKQGVVRQVYRGIIFLYDESEEENGGYFCCKSQSCEK 553

Query:   196 TKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RSWQAREQNTEFKRGDRDGMFAVGQT 253
              K+                               + WQ RE+     +GD    +++GQ 
Sbjct:   554 VKLFTEESNEKTGGFDGTAFEDFVSSPKSPLSPEKEWQPRERYNSSNQGDIGSTYSIGQK 613

Query:   254 LRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGKSFITSTSDDQGSA 313
             LRIRVGPLKGYLCRV+A+RYSDVTVKLDSQ KI TVK EHLAEVR ++ + STS D G+ 
Sbjct:   614 LRIRVGPLKGYLCRVIALRYSDVTVKLDSQHKIFTVKSEHLAEVRDRNTVLSTSGDAGTG 673

Query:   314 SFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNP-A 372
             SF+PF  LG    +GDW   A TS+EG  WN GG S       +       L  E NP  
Sbjct:   674 SFQPFGMLGTESSTGDWAIGAGTSSEGGNWNIGGPSTDSHESLNIERNMVQLCREKNPWG 733

Query:   373 NAFGSGDNGAN-KDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAY 431
              +  + D      D+  SAW +   A +N      A+       WN    K   S  G  
Sbjct:   734 GSKPTSDVSPTVADDNTSAWANA--AAENKP----ASASDQPGGWNPWG-KTPASEAGTV 786

Query:   432 GGWGKEDAGSSLQDSQDNWGKNKDACDNQANXXXXXXXXXXXXXXGNSTSS-WG------ 484
              GWG   A S+++ S  +W K   +  N A+                   S WG      
Sbjct:   787 SGWGDTSA-SNVEAS--SWEKQGASTSNVADLGSWGTHGGSSGGNKQDEDSVWGKLCEAS 843

Query:   485 DKTAEKNEPXXXXXXXXXXXXXXXXXXXXALATENPTVSWGN-------ASGG--WTQQ- 534
             + + +K E                     + A++   VSWG        + GG  W+ Q 
Sbjct:   844 ESSQKKEESSWGKKGGSDGESSWGNKDGNSSASKKDGVSWGQQDKGSDESKGGSAWSNQC 903

Query:   535 ----KGGNMDERSGWKK---DDSGNQDQRSGWNKPKTFGADVGSSWNKQ-DGICSSDVQD 586
                  G   D  SGW K   D + N      W +P       GSSW K+ DG  S   +D
Sbjct:   904 GDFGSGKKKDGSSGWNKSAEDSNANSKGVPDWGQPND-----GSSWGKKGDGAASWGKKD 958

Query:   587 GGSSWAKQDXXXXXXXXXXXXLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLA 646
              G SW K+D               K DGGSSWGK+D G    K DGGSSW K        
Sbjct:   959 DGGSWGKKDDG------------NKDDGGSSWGKKDDGQ---KDDGGSSWEK-------- 995

Query:   647 KQDGGSSWGKQDRG-SSWGKQDEGSS-WSKRD-GGSSWGKQDGGSSL--AKQDGGSSWGK 701
             K DGGSSWGK+D G SSWGK+D+G S W K+D GGSSWGK+D G SL   K DG SSWGK
Sbjct:   996 KFDGGSSWGKKDDGGSSWGKKDDGGSLWGKKDDGGSSWGKEDDGGSLWGKKDDGESSWGK 1055

Query:   702 QDGG-SSLGKQD-GGSSWSKQD-GGSSWGKQD-GGSSWGKQDGGSSWGKQD--G-GSSW- 753
             +D G SS GK+D GGSSW K+D GG S    D GG  +G + GG   G +D  G GSS+ 
Sbjct:  1056 KDDGESSWGKKDDGGSSWGKKDEGGYSEQTFDRGGRGFGGRRGGGRRGGRDQFGRGSSFG 1115

Query:   754 -SKEPDQQHRKNGGSSWGNRDG---GSSWSKQTDQQDNQEKPLESDXXXXXXXXXXXXXX 809
              S++P    + +GGSSWG +DG   GSSW K+ D         + +              
Sbjct:  1116 NSEDPAPWSKPSGGSSWGKQDGDGGGSSWGKENDAGGGSSWGKQDNGVGSSWGKQNDGSG 1175

Query:   810 XXXXXEVSDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTD----WNKK 855
                     +  G GS     ++ +GG    G+ W ++D G D    W K+
Sbjct:  1176 GGSSWGKQNDAGGGS--SWGKQDSGG---DGSSWGKQDGGGDSGSAWGKQ 1220
GO:0000166 "nucleotide binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006306 "DNA methylation" evidence=IMP
GO:0030422 "production of siRNA involved in RNA interference" evidence=IMP
DICTYBASE|DDB_G0289901 DDB_G0289901 "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2040954 AT2G34210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290685 DDB_G0290685 "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P82003 P82003 "Prothoracicostatic peptide" [Bombyx mori (taxid:7091)] Back     alignment and assigned GO terms
FB|FBgn0029518 CG13376 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NZW4 DSPP "Dentin sialophosphoprotein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y871 ESTA "Feruloyl esterase B" [Piromyces equi (taxid:99929)] Back     alignment and assigned GO terms
MGI|MGI:96696 Krt9 "keratin 9" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0038492 Mur89F "Mucin related 89F" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
KTF1
KTF1 (KOW DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1); nucleotide binding; KOW DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 (KTF1); FUNCTIONS IN- nucleotide binding; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- KOW (InterPro-IPR005824); BEST Arabidopsis thaliana protein match is- GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2); structural constituent of ribosome / transcription elongation regulator/ transcription factor (TAIR-AT4G08350.1); Has 121722 Blast hits t [...] (1493 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AGO4
AGO4 (ARGONAUTE 4); nucleic acid binding; AGO4 is a member of a class of PAZ/PIWI domain contai [...] (924 aa)
    • • 0.970
GTB1
GTB1; RNA binding / hydrolase, acting on ester bonds / transcription elongation regulator; Rela [...] (1647 aa)
   •  • 0.837
DRM2
DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2); N-methyltransferase; A putative DNA methyltransf [...] (626 aa)
      • 0.823
DMS3
DMS3 (DEFECTIVE IN MERISTEM SILENCING 3); Similar to hinge-domain region of structural maintena [...] (420 aa)
      • 0.790
AGO6
AGO6 (ARGONAUTE 6); nucleic acid binding; Encodes a nuclear localized 879-amino-acid protein th [...] (878 aa)
      • 0.790
RDR2
RDR2 (RNA-DEPENDENT RNA POLYMERASE 2); RNA-directed RNA polymerase; Encodes RNA-dependent RNA p [...] (1133 aa)
      • 0.784
DCL3
ribonuclease III family protein; Encodes a ribonuclease III family protein that is required for [...] (1580 aa)
      • 0.784
NRPD1A
NRPD1A (NUCLEAR RNA POLYMERASE D 1A); DNA binding / DNA-directed RNA polymerase; Encodes one of [...] (1453 aa)
      • 0.716
NRPD4
NRPD4; Non-catalytic subunit common to Nuclear DNA-dependent RNA polymerases IV and V; homologo [...] (160 aa)
      • 0.677
AT4G10070
KH domain-containing protein; KH domain-containing protein; FUNCTIONS IN- RNA binding, nucleic [...] (725 aa)
      • 0.677

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1378
cd0608443 cd06084, KOW_Spt5_4, KOW domain of Spt5, repeat 4 7e-12
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 3e-06
PRK12678 672 PRK12678, PRK12678, transcription termination fact 5e-06
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 9e-06
cd0608552 cd06085, KOW_Spt5_5, KOW domain of Spt5, repeat 5 1e-05
PRK12678 672 PRK12678, PRK12678, transcription termination fact 8e-05
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 2e-04
COG5164607 COG5164, SPT5, Transcription elongation factor [Tr 2e-04
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 6e-04
PRK12678 672 PRK12678, PRK12678, transcription termination fact 7e-04
PRK12678 672 PRK12678, PRK12678, transcription termination fact 0.002
>gnl|CDD|240508 cd06084, KOW_Spt5_4, KOW domain of Spt5, repeat 4 Back     alignment and domain information 
 Score = 61.0 bits (149), Expect = 7e-12
 Identities = 22/42 (52%), Positives = 27/42 (64%)

Query: 148 DTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSK 189
           DT +V +GP K RQG V  IYRG LF++    TENGG F  +
Sbjct: 2   DTVKVVDGPYKGRQGTVLHIYRGTLFLHSREVTENGGIFVVR 43

Spt5, an eukaryotic ortholog of NusG, contains multiple KOW motifs at its C-terminus. Spt5 is involved in transcription elongation and termination. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. KOW_Spt5 domains play critical roles in recruitment of multiple other eukaryotic transcription elongation and RNA biogenesis factors and additionally are involved in the binding of the eukaryotic Spt5 proteins to RNA polymerases. Length = 43
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|240509 cd06085, KOW_Spt5_5, KOW domain of Spt5, repeat 5 Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|227493 COG5164, SPT5, Transcription elongation factor [Transcription] Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1378
KOG19991024 consensus RNA polymerase II transcription elongati 100.0
COG5164607 SPT5 Transcription elongation factor [Transcriptio 100.0
KOG19991024 consensus RNA polymerase II transcription elongati 98.72
PF0046732 KOW: KOW motif; InterPro: IPR005824 Ribosomes are 97.18
KOG09211282 consensus Dosage compensation complex, subunit MLE 97.02
COG5164607 SPT5 Transcription elongation factor [Transcriptio 96.91
PF0046732 KOW: KOW motif; InterPro: IPR005824 Ribosomes are 96.69
TIGR00405145 L26e_arch ribosomal protein L24p/L26e, archaeal. T 96.29
KOG09211282 consensus Dosage compensation complex, subunit MLE 95.98
PRK08559153 nusG transcription antitermination protein NusG; V 95.92
smart0073928 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i 95.77
KOG3973465 consensus Uncharacterized conserved glycine-rich p 95.51
CHL0014183 rpl24 ribosomal protein L24; Validated 95.49
PRK1228176 rplX 50S ribosomal protein L24; Reviewed 95.39
PRK00004105 rplX 50S ribosomal protein L24; Reviewed 95.31
TIGR01956258 NusG_myco NusG family protein. This model represen 95.24
TIGR00922172 nusG transcription termination/antitermination fac 94.45
TIGR01955159 RfaH transcriptional activator RfaH. This model re 94.41
KOG3262215 consensus H/ACA small nucleolar RNP component GAR1 94.24
PRK05609181 nusG transcription antitermination protein NusG; V 94.07
smart0073928 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i 94.05
TIGR01079104 rplX_bact ribosomal protein L24, bacterial/organel 93.9
PRK01191120 rpl24p 50S ribosomal protein L24P; Validated 93.79
KOG3262215 consensus H/ACA small nucleolar RNP component GAR1 93.48
PRK09014162 rfaH transcriptional activator RfaH; Provisional 93.2
PTZ00194143 60S ribosomal protein L26; Provisional 93.06
COG0250178 NusG Transcription antiterminator [Transcription] 92.65
TIGR01080114 rplX_A_E ribosomal protein L24p/L26e, archaeal/euk 92.3
PRK09014162 rfaH transcriptional activator RfaH; Provisional 91.73
COG0198104 RplX Ribosomal protein L24 [Translation, ribosomal 91.71
TIGR01955159 RfaH transcriptional activator RfaH. This model re 91.66
PRK05609181 nusG transcription antitermination protein NusG; V 89.59
TIGR00405145 L26e_arch ribosomal protein L24p/L26e, archaeal. T 89.04
TIGR01080114 rplX_A_E ribosomal protein L24p/L26e, archaeal/euk 88.7
TIGR00922172 nusG transcription termination/antitermination fac 86.54
PLN00208145 translation initiation factor (eIF); Provisional 86.24
PRK04313237 30S ribosomal protein S4e; Validated 85.94
PRK00004105 rplX 50S ribosomal protein L24; Reviewed 84.64
PRK1228176 rplX 50S ribosomal protein L24; Reviewed 84.42
PRK08559153 nusG transcription antitermination protein NusG; V 84.15
PTZ00194143 60S ribosomal protein L26; Provisional 83.67
smart0065283 eIF1a eukaryotic translation initiation factor 1A. 83.54
CHL0014183 rpl24 ribosomal protein L24; Validated 82.92
KOG1708236 consensus Mitochondrial/chloroplast ribosomal prot 81.98
TIGR01956258 NusG_myco NusG family protein. This model represen 81.95
COG0250178 NusG Transcription antiterminator [Transcription] 81.79
PTZ00329155 eukaryotic translation initiation factor 1A; Provi 81.6
PRK04012100 translation initiation factor IF-1A; Provisional 81.27
TIGR01079104 rplX_bact ribosomal protein L24, bacterial/organel 80.38
PRK1244287 translation initiation factor IF-1; Reviewed 80.04
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-73  Score=675.38  Aligned_cols=343  Identities=32%  Similarity=0.438  Sum_probs=270.3

Q ss_pred             CccccceeEEEEeeceEEecCCCCCHHHHhccCCCCCCcccchHHHHHHhhhccCCc-------EEEe------------
Q 000637            1 MMLKDGYLYKKVSIDSLSCWGVVPSEEELLKFQPSESNESADLEWLSQLYGERKKKR-------TTIV------------   61 (1378)
Q Consensus         1 lmfkDGFLYKdVsIqSL~t~nVqPTLDEL~KF~~~~~de~~DLasLS~s~Geqkk~~-------vIVi------------   61 (1378)
                      |||+||||||+|+|++|++++|+||||||+||+++  ++.+||+++++++.+++++|       |+|+            
T Consensus       352 ~~~~dGFLyK~v~i~sI~t~gV~PT~dELekF~~~--~e~~Dl~~~st~~~~r~~~~~F~~GD~VeV~~Gel~glkG~ve  429 (1024)
T KOG1999|consen  352 ELFKDGFLYKDVSISSIITDGVKPTLDELEKFNPS--NEEGDLEWVSTLKSNRKKKHLFSPGDAVEVIVGELKGLKGKVE  429 (1024)
T ss_pred             ceeccceeeeeeecceeeecCcccCHHHHHhhcCC--CccccceeeeeeccccccccccCCCCeEEEeeeeeccceeEEE
Confidence            68999999999999999999999999999999987  45899999997777777776       2222            


Q ss_pred             -------------------------------ccCCC--------cC----------------------------------
Q 000637           62 -------------------------------GKGGD--------KG----------------------------------   68 (1378)
Q Consensus        62 -------------------------------~~G~h--------kg----------------------------------   68 (1378)
                                                     ++|+|        ++                                  
T Consensus       430 ~vdg~~vti~~~~e~l~~pl~~~~~eLrKyF~~GDhVKVi~G~~eG~tGlVvrVe~~~vi~~Sd~t~eel~Vf~~dlq~c  509 (1024)
T KOG1999|consen  430 SVDGTIVTIMSKHEDLKGPLEVPASELRKYFEPGDHVKVIAGRYEGDTGLVVRVEQGDVILLSDLTMEELKVFARDLQLC  509 (1024)
T ss_pred             eccCceEEEeeccccCCCccccchHhhhhhccCCCeEEEEeccccCCcceEEEEeCCeEEEEecCccceeeEEehhcccc
Confidence                                           13333        22                                  


Q ss_pred             -cCCCCCCCCCccEeceeEeecCCceEEEEEeccCCceEEccCCCCCCcEEEEeccccccCCCCCccccccCCCCeeccC
Q 000637           69 -EGSSGSSLENSFELYELVCFGRKDFGLIVGMEKDDHYKILKEGSEGPAVVTVERRTLKNGPFDMKFTALDQSMKVISLN  147 (1378)
Q Consensus        69 -EssTG~~slG~YELHDLVQLD~qTVGVIVrVEKDDsFKVLdqngDrGkVvtVKpseIk~Kr~dRR~vAlD~nGNtIrVg  147 (1378)
                       |++++++.+++||||||||||.++|||||++|+ +.|+||+.++   +|++|++++|.+|+..++++|+|+++|+|+++
T Consensus       510 ~ev~~gv~~~ge~e~hdlVqLd~~~vgvI~rle~-e~~~vl~~~g---~v~~i~~~~i~~kk~~r~~~~~D~~~n~I~~k  585 (1024)
T KOG1999|consen  510 SEVTLGVEKSGEYELHDLVQLDNQNVGVIVRLER-ETFQVLGMNG---KVVTIRKSSITKKKDNRKAVAVDRNGNEIRVK  585 (1024)
T ss_pred             hheeecccccccccccceeecCCCcEEEEEEecc-hheeeecCcC---ceEEEeechhhhhhhhhhheeecccCCeeccc
Confidence             245677899999999999999999999999999 6999999984   99999999999888888899999999999999


Q ss_pred             CeEEEecCCCCCceeEEEEEEcceEEEEeccccccccEEEEeCCceeecccccccCCCCCCCCCCCCC-CCCCCCCCCCC
Q 000637          148 DTARVSEGPSKDRQGIVKKIYRGILFIYDENETENGGYFCSKSQHCEKTKVEACEGKGGGSGASGFEE-FPSSPKSPLSP  226 (1378)
Q Consensus       148 DtVKVVdGP~KGRQG~VlHIyRg~LFL~sR~i~ENGGIFVvrArnVvlVgg~asnsK~g~s~~~~f~d-l~sSp~spmSP  226 (1378)
                      |+|+||+||+++|+|+|+||||.+||||||+++||+|||||+++||++++..    |.........++ .+|+|.--++|
T Consensus       586 D~Vkvi~Gp~~g~~G~v~~i~r~~~F~h~r~~~En~Gv~vck~k~~~~~g~~----~st~~~~~~~~~l~~msP~r~~sp  661 (1024)
T KOG1999|consen  586 DTVKVIGGPSKGREGEVLHIYRPFVFLHSRKNLENGGVFVCKEKNLILAGGK----KSTNSLAFNKGALAPMSPGRIQSP  661 (1024)
T ss_pred             ceEEEecCCCCCccCccceeecceeeeeehhhcccCCeEEEecCCceecccc----CcccchhhcccccCCCCcccccCC
Confidence            9999999999999999999999999999999999999999999999999852    211101111111 23444211222


Q ss_pred             ccchh--hcccCCCCCCCCCCCccccCcEEEEecCCCCCceeEEEeecCCeEEEEecCCceEEEEeCCcceeccCC----
Q 000637          227 KRSWQ--AREQNTEFKRGDRDGMFAVGQTLRIRVGPLKGYLCRVLAVRYSDVTVKLDSQQKILTVKGEHLAEVRGK----  300 (1378)
Q Consensus       227 ~rp~q--~rg~~r~fgRGGRd~D~LIGKTVKIrkGPYKGYlGiVKDaTgt~ARVELHSK~KtITVdKe~Lsvv~g~----  300 (1378)
                      +.+..  ...+.+..+|++++++.||||||||+.||||||+|||||||+.+||||||++|++|+|++.+|.++...    
T Consensus       662 ~~~~~~~ga~g~~gggrGg~rd~~l~GktVrI~~Gp~KG~~GivkD~~~~~arVELhs~~~ti~vd~~~~~~v~~~~~~g  741 (1024)
T KOG1999|consen  662 MGPSGGPGAFGGHGGGRGGNRDDSLLGKTVRIRLGPKKGYLGIVKDVNGDTARVELHSKCVTIKVDRLKRKIVGSTRDGG  741 (1024)
T ss_pred             cCCCCCCCCcCcCccCccCcCcchhcCcEEEEecCCcccccceeEeccCCeeEEEEEeccEEEEechhhceEEeeccCCC
Confidence            22211  111122235666566899999999999999999999999999999999999999999999999876432    


Q ss_pred             ------------------------ccccccCCCCCCC-CCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCC---CCCCCC
Q 000637          301 ------------------------SFITSTSDDQGSA-SFKPFDPLGAGGGSGDWMSAATTSAEGDRWNAG---GASAGR  352 (1378)
Q Consensus       301 ------------------------~t~~s~S~~P~s~-~~tP~~~~G~~~gs~~~~~G~~T~a~~~aWn~g---~~s~~~  352 (1378)
                                              .+++.++.+|.++ ++|||+    -++.+++|+|+|||||.+||++.   +|+++.
T Consensus       742 ~~~sYg~~~~~~g~~~~~~~~~Gs~tp~~~s~tpl~~~s~tp~~----~~~~Tp~~dG~rTP~r~~aW~~~~~~tPa~~~  817 (1024)
T KOG1999|consen  742 ETSSYGERTPGYGRVTPARYGMGSSTPMYGSNTPLWGGSRTPAR----DGGATPSHDGSRTPARGRAWNPYNGKTPARNF  817 (1024)
T ss_pred             CccccccccccccccCccccCCCCcCccCCCCCCCCCcccCccc----cCCCCcCCCCCcCCCCCCCcCCCCCCCCcccc
Confidence                                    1222244444444 444444    25667789999999999999987   566655


Q ss_pred             CCCCC
Q 000637          353 SSWPS  357 (1378)
Q Consensus       353 ~~W~~  357 (1378)
                      +.|.+
T Consensus       818 ~~~~~  822 (1024)
T KOG1999|consen  818 DNREP  822 (1024)
T ss_pred             CCccc
Confidence            66644

>COG5164 SPT5 Transcription elongation factor [Transcription] Back     alignment and domain information
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription] Back     alignment and domain information
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>COG5164 SPT5 Transcription elongation factor [Transcription] Back     alignment and domain information
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>PRK08559 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif Back     alignment and domain information
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] Back     alignment and domain information
>CHL00141 rpl24 ribosomal protein L24; Validated Back     alignment and domain information
>PRK12281 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>PRK00004 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>TIGR01956 NusG_myco NusG family protein Back     alignment and domain information
>TIGR00922 nusG transcription termination/antitermination factor NusG Back     alignment and domain information
>TIGR01955 RfaH transcriptional activator RfaH Back     alignment and domain information
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05609 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif Back     alignment and domain information
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle Back     alignment and domain information
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated Back     alignment and domain information
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09014 rfaH transcriptional activator RfaH; Provisional Back     alignment and domain information
>PTZ00194 60S ribosomal protein L26; Provisional Back     alignment and domain information
>COG0250 NusG Transcription antiterminator [Transcription] Back     alignment and domain information
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic Back     alignment and domain information
>PRK09014 rfaH transcriptional activator RfaH; Provisional Back     alignment and domain information
>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01955 RfaH transcriptional activator RfaH Back     alignment and domain information
>PRK05609 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal Back     alignment and domain information
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic Back     alignment and domain information
>TIGR00922 nusG transcription termination/antitermination factor NusG Back     alignment and domain information
>PLN00208 translation initiation factor (eIF); Provisional Back     alignment and domain information
>PRK04313 30S ribosomal protein S4e; Validated Back     alignment and domain information
>PRK00004 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>PRK12281 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>PRK08559 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>PTZ00194 60S ribosomal protein L26; Provisional Back     alignment and domain information
>smart00652 eIF1a eukaryotic translation initiation factor 1A Back     alignment and domain information
>CHL00141 rpl24 ribosomal protein L24; Validated Back     alignment and domain information
>KOG1708 consensus Mitochondrial/chloroplast ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01956 NusG_myco NusG family protein Back     alignment and domain information
>COG0250 NusG Transcription antiterminator [Transcription] Back     alignment and domain information
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional Back     alignment and domain information
>PRK04012 translation initiation factor IF-1A; Provisional Back     alignment and domain information
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle Back     alignment and domain information
>PRK12442 translation initiation factor IF-1; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1378
d1nppa258 N-utilization substance G protein NusG, C-terminal 96.36
d1nz9a_58 N-utilization substance G protein NusG, C-terminal 95.93
d2do3a162 Transcription elongation factor SPT5 {Human (Homo 95.42
d1vqot1119 Ribosomal proteins L24 (L24p) {Archaeon Haloarcula 93.86
d2zjrr1110 Ribosomal proteins L24 (L24p) {Deinococcus radiodu 93.48
d1nppa258 N-utilization substance G protein NusG, C-terminal 92.52
d2gycs199 Ribosomal proteins L24 (L24p) {Escherichia coli [T 89.9
d1nz9a_58 N-utilization substance G protein NusG, C-terminal 89.02
d2do3a162 Transcription elongation factor SPT5 {Human (Homo 88.98
d2j01y1101 Ribosomal proteins L24 (L24p) {Thermus thermophilu 86.53
d1ib8a174 Hypothetical protein SP14.3 (SP0552) {Streptococcu 84.49
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: N-utilization substance G protein NusG, C-terminal domain
domain: N-utilization substance G protein NusG, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.36  E-value=0.0038  Score=35.20  Aligned_cols=45  Identities=22%  Similarity=0.321  Sum_probs=36.8

Q ss_pred             CCCCCCEEEEECCCCCCCEEEEEEECC--CEEEEEECCCCEEEEEEC
Q ss_conf             633575899902799872159996519--838999457761999807
Q 000637          247 MFAVGQTLRIRVGPLKGYLCRVLAVRY--SDVTVKLDSQQKILTVKG  291 (1378)
Q Consensus       247 D~LIGKTVKIRkGPYKGYlGiVKDvTd--t~VRVELHSK~KtVTVdK  291 (1378)
                      |+-+|.+|+|+.|||+||.|+|.++..  ..|+|+|..--+...|+-
T Consensus         4 df~~Gd~V~I~~GpF~g~~g~V~~i~~~~~rv~V~v~~fGr~t~vel   50 (58)
T d1nppa2           4 EFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVEL   50 (58)
T ss_dssp             SCCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEEEEETTEEEEEEE
T ss_pred             CCCCCCEEEECCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEE
T ss_conf             52599999991268999899999982889999999960099835866
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ib8a1 b.38.2.1 (A:91-164) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure