Citrus Sinensis ID: 000647
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1374 | 2.2.26 [Sep-21-2011] | |||||||
| Q94FB9 | 1337 | ABC transporter D family | yes | no | 0.967 | 0.994 | 0.773 | 0.0 | |
| P16970 | 659 | ATP-binding cassette sub- | yes | no | 0.414 | 0.863 | 0.338 | 2e-92 | |
| P55096 | 659 | ATP-binding cassette sub- | yes | no | 0.414 | 0.863 | 0.337 | 6e-92 | |
| P28288 | 659 | ATP-binding cassette sub- | yes | no | 0.358 | 0.746 | 0.363 | 3e-90 | |
| Q9UBJ2 | 740 | ATP-binding cassette sub- | no | no | 0.388 | 0.721 | 0.316 | 6e-85 | |
| Q8T8P3 | 741 | ABC transporter D family | yes | no | 0.377 | 0.699 | 0.324 | 7e-85 | |
| P33897 | 745 | ATP-binding cassette sub- | no | no | 0.392 | 0.723 | 0.324 | 2e-84 | |
| P48410 | 736 | ATP-binding cassette sub- | no | no | 0.422 | 0.789 | 0.305 | 6e-84 | |
| Q61285 | 741 | ATP-binding cassette sub- | no | no | 0.386 | 0.716 | 0.312 | 2e-82 | |
| Q9QY44 | 741 | ATP-binding cassette sub- | no | no | 0.436 | 0.809 | 0.288 | 3e-82 |
| >sp|Q94FB9|AB1D_ARATH ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 2161 bits (5600), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1064/1375 (77%), Positives = 1187/1375 (86%), Gaps = 46/1375 (3%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L LTE GRG+++SRRK+ILLA+GI+ AGGTA YLKSR +S++PD+ NG D
Sbjct: 1 MPSLQLLQLTERGRGLVASRRKSILLAAGIVAAGGTAVYLKSRVASRRPDSSRLCNGQSD 60
Query: 61 SERKPDKAVANRSN--IKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRT 118
+ +K A N I +K GGLKSLQVL AILLS+MGKMGARDLLALV VV RT
Sbjct: 61 DDETLEKLTATDQNAKITTKKKKGGGLKSLQVLTAILLSQMGKMGARDLLALVATVVFRT 120
Query: 119 ALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKI 178
ALSNRLAKVQGFLFRAAFLRR PLF +LISENI+LCF+LST+HSTSKYITG LSL+FRKI
Sbjct: 121 ALSNRLAKVQGFLFRAAFLRRAPLFLRLISENIMLCFMLSTLHSTSKYITGALSLRFRKI 180
Query: 179 VTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLY 238
+TK+IH+ YFENM YYKISHVDGRITHPEQR+ASDVPRF SELS+L+ DDLTAVTDG+LY
Sbjct: 181 LTKIIHSHYFENMVYYKISHVDGRITHPEQRIASDVPRFSSELSDLILDDLTAVTDGILY 240
Query: 239 TWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAE 298
WRLCSYASPKY+FWILAYVLGAGT +RNFSP+FGKLMSKEQQLEGEYRQLHSRLRTH+E
Sbjct: 241 AWRLCSYASPKYIFWILAYVLGAGTAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSE 300
Query: 299 SIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 358
SIAFYGGE +EESHIQQKFK L HM VLHDHWWFGMIQDFLLKYLGATVAVILIIEPF
Sbjct: 301 SIAFYGGETREESHIQQKFKNLVSHMSHVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 360
Query: 359 FAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMV 418
F+G+L+PD STLGRA+MLSN+RYHTSVIISLFQ+LGTLSISSRRLNRLSGYADRIHELM
Sbjct: 361 FSGHLRPDDSTLGRAEMLSNIRYHTSVIISLFQALGTLSISSRRLNRLSGYADRIHELMA 420
Query: 419 ISRELSIEDKSP-QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 477
+SRELS +DKS QRN SRNY SEANY+EFS VKVVTPTGNVLVE+LTL+VE GSNLLIT
Sbjct: 421 VSRELSGDDKSSFQRNRSRNYLSEANYVEFSDVKVVTPTGNVLVEDLTLRVEQGSNLLIT 480
Query: 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPL 537
GPNGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPY AVGTLRDQLIYPL
Sbjct: 481 GPNGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYMAVGTLRDQLIYPL 540
Query: 538 TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597
TS QE E LT GMVELLKNVDLEYLLDRY PEKE+NWGDELSLGEQQRLGMARLFYHKP
Sbjct: 541 TSGQESELLTEIGMVELLKNVDLEYLLDRYQPEKEVNWGDELSLGEQQRLGMARLFYHKP 600
Query: 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHD 657
KFAILDECTSAVTTDMEERF AKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W VH
Sbjct: 601 KFAILDECTSAVTTDMEERFAAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHY 660
Query: 658 KRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASP 717
KRD S+++T + I+ +KSS+TDRQ+DAM V++AF A+K+SA +N KAQSY +++IA SP
Sbjct: 661 KRDDSALLTDAEIDSVKSSDTDRQNDAMVVQRAFAAARKESA-TNSKAQSYQTQLIARSP 719
Query: 718 IADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDR 777
+ D +V LP FPQ +++ R LP RVA M VL+PT+FDKQGAQLLAVA LVVSRT ISDR
Sbjct: 720 VVDKSVVLPRFPQPQTSQRALPSRVAAMLNVLIPTIFDKQGAQLLAVACLVVSRTLISDR 779
Query: 778 IASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837
IASLNGTTVKYVLEQDKA+FVRLIG+SVLQS ASS IAPS+RHLT RLALGWRIR+TQHL
Sbjct: 780 IASLNGTTVKYVLEQDKAAFVRLIGLSVLQSGASSIIAPSLRHLTQRLALGWRIRLTQHL 839
Query: 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 897
L++YLR N+FYKVF+MS SIDADQR+T DLEKLT DLSGL+TGMVKPSVDILWFTWRMK
Sbjct: 840 LRNYLRNNAFYKVFHMSGNSIDADQRLTRDLEKLTADLSGLLTGMVKPSVDILWFTWRMK 899
Query: 898 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFF 957
LTGQRGVAILY YMLLGLGFLR V P+FGDL EQQLEG FRFMHERL HAES+AFF
Sbjct: 900 LLTGQRGVAILYTYMLLGLGFLRRVAPDFGDLAGEEQQLEGKFRFMHERLNTHAESIAFF 959
Query: 958 GGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG 1017
GGGAREKAM++ +FR LL+HSL+LL+KKWL+GILDDFVTKQLP+NVTWGLSLLYA+EHKG
Sbjct: 960 GGGAREKAMVDKKFRALLDHSLMLLRKKWLYGILDDFVTKQLPNNVTWGLSLLYALEHKG 1019
Query: 1018 DRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQ 1077
DRALVSTQGELAHALR+LASVVSQSF+AFGDILELH+KF+ELSGGINRIFEL+E LDA+Q
Sbjct: 1020 DRALVSTQGELAHALRYLASVVSQSFMAFGDILELHKKFLELSGGINRIFELDEFLDASQ 1079
Query: 1078 PGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGS 1137
G +S+++ + D QD +SFS++DIITP+QKL+A +L+ EIV GKSLLVTGPNGS
Sbjct: 1080 SG-----VTSENQTSRLDSQDLLSFSEVDIITPAQKLMASKLSCEIVSGKSLLVTGPNGS 1134
Query: 1138 GKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLS 1197
GK+SVFRVLR +WP V G LTKPS I +E GSG G+F+VPQRPYTCLGTLRDQIIYPLS
Sbjct: 1135 GKTSVFRVLRDIWPTVCGRLTKPSLDI-KELGSGNGMFFVPQRPYTCLGTLRDQIIYPLS 1193
Query: 1198 REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257
+EEAE RA KL+ GE + +ILDS+LKTILE VRL YLLER+ GWDA NWEDILS
Sbjct: 1194 KEEAEKRAAKLYTSGESSTEAGSILDSHLKTILENVRLVYLLERDVGGWDATTNWEDILS 1253
Query: 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDE 1317
LGEQQRLGM ARLFFH+PKFG+LDE
Sbjct: 1254 LGEQQRLGM------------------------------------ARLFFHRPKFGVLDE 1277
Query: 1318 CTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1372
CTNATSVDVEEQLYR+A+DMG+TF+TSSQRPALIPFHSLELRLIDGEGNWELR+I
Sbjct: 1278 CTNATSVDVEEQLYRVARDMGVTFITSSQRPALIPFHSLELRLIDGEGNWELRSI 1332
|
Contributes to the transport of fatty acids and their derivatives (acyl CoAs) across the peroxisomal membrane. Provides acetate to the glyoxylate cycle in developing seedlings. Involved in pollen tube elongation, ovule fertilization, and seeds germination after imbibition (controls the switch between the opposing developmental programs of dormancy and germination), probably by promoting beta-oxidation of storage lipids during gluconeogenesis. Required for biosynthesis of jasmonic acid and conversion of indole butyric acid to indole acetic acid. Confers sensitivity to monofluoroacetic acid (FAc), a toxic acetate analog, and to 2,4-dichlorophenoxybutyric acid (2,4-DB) and indole-3-butyric acid (IBA), two precursors of auxin after beta-oxidation. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 7 |
| >sp|P16970|ABCD3_RAT ATP-binding cassette sub-family D member 3 OS=Rattus norvegicus GN=Abcd3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 342 bits (876), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 205/605 (33%), Positives = 326/605 (53%), Gaps = 36/605 (5%)
Query: 79 NQKKGGLKSLQVLAAILLSEMGK----MGARDL------LALVGIVVLRTALSNRLAKVQ 128
N +K G K V+ + LS + + M R L L+ ++++ +
Sbjct: 47 NNEKEGKKERAVVDKVFLSRLSQILKIMVPRTFCKETGYLILIAVMLVSRTYCDVWMIQN 106
Query: 129 GFLFRAAFLRRVPLFFQLISENILLCF-LLSTMHSTSKYITGTLSLQFRKIVTKLIHTRY 187
G L + + R F+ N + L+S +++ KY L L FR +T+ ++ Y
Sbjct: 107 GTLIESGIIGRSSKDFKRYLFNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTRYLYEEY 166
Query: 188 FENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYAS 247
+ YYK+ ++D RI +P+Q L DV +FC+ + +L + D +LY ++L S
Sbjct: 167 LQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIG 226
Query: 248 PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN 307
+ ++AY+L +G + GK+ EQ+ EGEYR ++SRL T++E IAFY G
Sbjct: 227 AQGPASMMAYLLVSGLFLTRLRRPIGKMTIMEQKYEGEYRFVNSRLITNSEEIAFYNGNK 286
Query: 308 KEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDT 367
+E+ I F+ L H+ + + G I + KY+ V +++ PF P
Sbjct: 287 REKQTIHSVFRKLVEHLHNFIFFRFSMGFIDSIIAKYIATVVGYLVVSRPFL-DLAHPRH 345
Query: 368 STLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL---- 423
+++L + +++ + Q+LG + ++ R + RL+G+ RI ELM + ++L
Sbjct: 346 LHSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGK 405
Query: 424 ------SIEDK-------SPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEP 470
S +DK SP G+ + N I+F V + TP G++L+++L+ +V
Sbjct: 406 YERTMVSQQDKGIEGAQASPLIPGAGEIINADNIIKFDHVPLATPNGDILIQDLSFEVRS 465
Query: 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLR 530
G+N+LI GPNG GKSSLFRVLG LWPL GH+ KP G ++FYVPQRPY +GTLR
Sbjct: 466 GANVLICGPNGCGKSSLFRVLGELWPLFGGHLTKPERG-----KLFYVPQRPYMTLGTLR 520
Query: 531 DQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI-NWGDELSLGEQQRLG 588
DQ+IYP DQ+ + ++ + L NV L ++L+R + +W D LS GE+QR+
Sbjct: 521 DQVIYPDGKEDQKKKGISDQVLKGYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMA 580
Query: 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648
MARLFYHKP+FAILDECTSAV+ D+E+ + R +G + T+SHR +L H+ L +D
Sbjct: 581 MARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHMD 640
Query: 649 GEGEW 653
G G +
Sbjct: 641 GRGNY 645
|
Rattus norvegicus (taxid: 10116) |
| >sp|P55096|ABCD3_MOUSE ATP-binding cassette sub-family D member 3 OS=Mus musculus GN=Abcd3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 340 bits (871), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 204/605 (33%), Positives = 324/605 (53%), Gaps = 36/605 (5%)
Query: 79 NQKKGGLKSLQVLAAILLSEMGK----MGARDL------LALVGIVVLRTALSNRLAKVQ 128
N +K G K V+ + LS + + M R L L+ ++++ +
Sbjct: 47 NNEKEGKKERAVVDKVFLSRLSQILKIMVPRTFCKETGYLLLIAVMLVSRTYCDVWMIQN 106
Query: 129 GFLFRAAFLRRVPLFFQLISENILLCF-LLSTMHSTSKYITGTLSLQFRKIVTKLIHTRY 187
G L + + R F+ N + L+S +++ KY L L FR +T+ ++ Y
Sbjct: 107 GTLIESGIIGRSSKDFKRYLFNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTRYLYEEY 166
Query: 188 FENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYAS 247
+ YYK+ ++D RI +P+Q L DV +FC+ + +L + D +LY ++L S
Sbjct: 167 LQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIG 226
Query: 248 PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN 307
+ ++AY+L +G + GK+ EQ+ EGEYR ++SRL T++E IAFY G
Sbjct: 227 AQGPASMMAYLLVSGLFLTRLRRPIGKMTIMEQKYEGEYRYVNSRLITNSEEIAFYNGNK 286
Query: 308 KEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDT 367
+E+ I F+ L H+ + + G I + KY+ V +++ PF P
Sbjct: 287 REKQTIHSVFRKLVEHLHNFIFFRFSMGFIDSIIAKYVATVVGYLVVSRPFL-DLAHPRH 345
Query: 368 STLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELS--- 424
+++L + +++ + Q+LG + ++ R + RL+G+ RI ELM + ++L+
Sbjct: 346 LHSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGR 405
Query: 425 ------------IE--DKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEP 470
IE SP G+ + N I+F V + TP G++L+++L+ +V
Sbjct: 406 YERTMVSQQEKGIEGAQASPLVPGAGEIINTDNIIKFDHVPLATPNGDILIQDLSFEVRS 465
Query: 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLR 530
G+N+LI GPNG GKSSLFRVLG LWPL G + KP G ++FYVPQRPY +GTLR
Sbjct: 466 GANVLICGPNGCGKSSLFRVLGELWPLFGGRLTKPERG-----KLFYVPQRPYMTLGTLR 520
Query: 531 DQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI-NWGDELSLGEQQRLG 588
DQ+IYP DQ+ ++ + E L NV L ++L+R + +W D LS GE+QR+
Sbjct: 521 DQVIYPDGKEDQKKRGISDQVLKEYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMA 580
Query: 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648
MARLFYHKP+FAILDECTSAV+ D+E+ + R +G + T+SHR +L H+ L +D
Sbjct: 581 MARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHMD 640
Query: 649 GEGEW 653
G G +
Sbjct: 641 GRGNY 645
|
Mus musculus (taxid: 10090) |
| >sp|P28288|ABCD3_HUMAN ATP-binding cassette sub-family D member 3 OS=Homo sapiens GN=ABCD3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 334 bits (857), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 188/517 (36%), Positives = 291/517 (56%), Gaps = 25/517 (4%)
Query: 156 LLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVP 215
L+S +++ KY L L FR +TK ++ Y + YYK+ ++D RI +P+Q L DV
Sbjct: 135 LISLVNNFLKYGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLDNRIANPDQLLTQDVE 194
Query: 216 RFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKL 275
+FC+ + +L + D +LY ++L S + ++AY++ +G + GK+
Sbjct: 195 KFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLVVSGLFLTRLRRPIGKM 254
Query: 276 MSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFG 335
EQ+ EGEYR ++SRL T++E IAFY G +E+ + F+ L H+ + + G
Sbjct: 255 TITEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTVHSVFRKLVEHLHNFILFRFSMG 314
Query: 336 MIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGT 395
I + KYL V +++ PF + P +++L + +++ + Q+LG
Sbjct: 315 FIDSIIAKYLATVVGYLVVSRPFLDLS-HPRHLKSTHSELLEDYYQSGRMLLRMSQALGR 373
Query: 396 LSISSRRLNRLSGYADRIHELMVISREL----------SIEDKS-------PQRNGSRNY 438
+ ++ R + RL+G+ RI ELM + ++L S ++K P G+
Sbjct: 374 IVLAGREMTRLAGFTARITELMQVLKDLNHGKYERTMVSQQEKGIEGVQVIPLIPGAGEI 433
Query: 439 FSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV 498
N I+F V + TP G+VL+ +L +V G+N+LI GPNG GKSSLFRVLG LWPL
Sbjct: 434 IIADNIIKFDHVPLATPNGDVLIRDLNFEVRSGANVLICGPNGCGKSSLFRVLGELWPLF 493
Query: 499 SGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPL-TSDQEVEPLTHGGMVELLKN 557
G + KP G ++FYVPQRPY +GTLRDQ+IYP DQ+ + ++ + E L N
Sbjct: 494 GGRLTKPERG-----KLFYVPQRPYMTLGTLRDQVIYPDGREDQKRKGISDLVLKEYLDN 548
Query: 558 VDLEYLLDRYPPEKEI-NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
V L ++L+R + +W D LS GE+QR+ MARLFYHKP+FAILDECTSAV+ D+E
Sbjct: 549 VQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEGY 608
Query: 617 FCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEW 653
+ R +G + T+SHR +L H+ L +DG G +
Sbjct: 609 IYSHCRKVGITLFTVSHRKSLWKHHEYYLHMDGRGNY 645
|
Probable transporter. The nucleotide-binding fold acts as an ATP-binding subunit with ATPase activity. Homo sapiens (taxid: 9606) |
| >sp|Q9UBJ2|ABCD2_HUMAN ATP-binding cassette sub-family D member 2 OS=Homo sapiens GN=ABCD2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (811), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 183/578 (31%), Positives = 307/578 (53%), Gaps = 44/578 (7%)
Query: 114 VVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSL 173
++ RT LS +A + G + ++ ++ F + + +++ + ++S +Y+ L+L
Sbjct: 114 LISRTFLSIYVAGLDGKIVKSIVEKKPRTFIIKLIKWLMIAIPATFVNSAIRYLECKLAL 173
Query: 174 QFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVT 233
FR + + YF N YYK+ ++DGR+ +P+Q L D+ F ++ L + +
Sbjct: 174 AFRTRLVDHAYETYFTNQTYYKVINMDGRLANPDQSLTEDIMMFSQSVAHLYSNLTKPIL 233
Query: 234 DGLLYTWRLCSYAS--------PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGE 285
D +L ++ L A+ P + ++ Y +++ SP FGKL+++E +G
Sbjct: 234 DVMLTSYTLIQTATSRGASPIGPTLLAGLVVY--ATAKVLKACSPKFGKLVAEEAHRKGY 291
Query: 286 YRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYL 345
R +HSR+ + E IAFY G E +Q+ +KAL M ++L W+ MI+ FL+KY+
Sbjct: 292 LRYVHSRIIANVEEIAFYRGHKVEMKQLQKSYKALADQMNLILSKRLWYIMIEQFLMKYV 351
Query: 346 GATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQS----LGTLSISSR 401
++ +I++ P D + M+S + +L S + + S +
Sbjct: 352 WSSSGLIMVAIPIITATGFADGEDGQKQVMVSERTEAFTTARNLLASGADAIERIMSSYK 411
Query: 402 RLNRLSGYADRIHELMVISRELS----------IEDKSPQRNGSRNYFSEANYIEFSG-- 449
+ L+GY R++ + + E+ E +S +NG++ ++ + G
Sbjct: 412 EVTELAGYTARVYNMFWVFDEVKRGIYKRTAVIQESESHSKNGAKVELPLSDTLAIKGKV 471
Query: 450 -----------VKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV 498
V ++TP G V+ L KVE G +LLITGPNG GKSSLFR+L GLWP+
Sbjct: 472 IDVDHGIICENVPIITPAGEVVASRLNFKVEEGMHLLITGPNGCGKSSLFRILSGLWPVY 531
Query: 499 SGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT-SDQEVEPLTHGGMVELLKN 557
G + KP + +FY+PQRPY ++G+LRDQ+IYP + D + T + +L N
Sbjct: 532 EGVLYKPP-----PQHMFYIPQRPYMSLGSLRDQVIYPDSVDDMHDKGYTDQDLERILHN 586
Query: 558 VDLEYLLDRYPP-EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
V L +++ R + ++W D LS GE+QR+GMAR+FYHKPK+A+LDECTSAV+ D+E +
Sbjct: 587 VHLYHIVQREGGWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGK 646
Query: 617 FCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWR 654
+ G S ++I+HRP+L +H +L DGEG WR
Sbjct: 647 IFQAAKGAGISLLSITHRPSLWKYHTHLLQFDGEGGWR 684
|
Probable transporter. Homo sapiens (taxid: 9606) |
| >sp|Q8T8P3|ABCD2_DICDI ABC transporter D family member 2 OS=Dictyostelium discoideum GN=abcD2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 316 bits (810), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 198/611 (32%), Positives = 314/611 (51%), Gaps = 93/611 (15%)
Query: 117 RTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFR 176
RT LS +A++ G + R+ + + L+ S ++++ KY T L+L+FR
Sbjct: 132 RTMLSVSIAEIAGKNAQNLVARKWKEMRNGVLKFALVSIPASFVNASLKYETDMLALRFR 191
Query: 177 KIVTKLIHTRYFENMAYYKISHVDG--RITHPEQRLASDVPRFCSELSELVQDDLTAVTD 234
K +++ +H Y E + +YK SH+ G RI + +QR+ SD+ +FC+ +S L D
Sbjct: 192 KRLSEYVHKEYLEGVNFYKASHLGGADRIDNADQRVTSDIEQFCNSMSSLYTTLFKPFLD 251
Query: 235 GLLYTWRLC---SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHS 291
+L+T +L + SP +F +Y + +G + + P FG+L +K+ +LEG YR +H
Sbjct: 252 LVLFTRKLVVVMGWGSPLLMF---SYFIVSGFLKKLIMPPFGRLTAKQSELEGNYRTVHQ 308
Query: 292 RLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAV 351
RL T+AE IAFY G KE I F + H V + G+ FL+KY + V
Sbjct: 309 RLITNAEEIAFYDGSRKERQIINLSFGDIYNHTGYVSYLKCLVGIFDGFLVKYCASIVGY 368
Query: 352 ILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYAD 411
++ P + G +S ++ + +T ++++L Q++G L + ++ ++GY
Sbjct: 369 GCMVLPIYTG--IRGSSGKDSTELTKDYIRNTQLMVALSQAIGQLVLLGNKVTLMAGYTS 426
Query: 412 RIHELMVISRELS-------------------------------------IED------- 427
R+ EL+ + + + +ED
Sbjct: 427 RVSELLEMIKSIKERGTSQFTIVHEDDVPNPLTNSPVNDKYDTSVDMSSWLEDWRKRSDQ 486
Query: 428 ----KSPQRN-----GSRNYFSEANYIE-----FSGVKVVTPTGNVLVENLTLKVEPGSN 473
K Q N G+ + ++E F V +V+P G +LVENL +V P N
Sbjct: 487 TRIVKRQQSNRSSASGATTVYGGGTFVEGDFIKFENVSIVSPEGKLLVENLDFQVMPNQN 546
Query: 474 LLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQL 533
++ITGPNGSGKSSLFR+LG LWPL G + KP ++I +VPQ+PY +GTLRDQ+
Sbjct: 547 VMITGPNGSGKSSLFRILGELWPLHCGTVIKP-----RKEDILFVPQKPYLVLGTLRDQI 601
Query: 534 IYPLTSDQEVEPLTHGGMVEL-LKNVDLEYLLDRYPPE----KEINWGD------ELSLG 582
IY P +H M +L + + DL++LL P ++ NW D LS G
Sbjct: 602 IY---------PHSHDDMKKLGVTDDDLQHLLATVDPNLTIIRQWNWDDTKDWFTALSGG 652
Query: 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHD 642
++QR+ MARLFYH+P++AILDECTSAV+ ++E + + +G + T+SHRP L A+HD
Sbjct: 653 QKQRIAMARLFYHRPQYAILDECTSAVSDEVEGKIYETCKKLGITLFTVSHRPQLRAYHD 712
Query: 643 VVLSLDGEGEW 653
VL +G G W
Sbjct: 713 YVLLFNGRGGW 723
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P33897|ABCD1_HUMAN ATP-binding cassette sub-family D member 1 OS=Homo sapiens GN=ABCD1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 315 bits (807), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 194/597 (32%), Positives = 326/597 (54%), Gaps = 58/597 (9%)
Query: 107 LLAL-VGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFF--QLISENILLCFLLSTMHST 163
LLAL +V RT LS +A++ G L R +R+ P F QL+ + +L+ + ++S
Sbjct: 93 LLALHSAALVSRTFLSVYVARLDGRLARC-IVRKDPRAFGWQLL-QWLLIALPATFVNSA 150
Query: 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSE 223
+Y+ G L+L FR + + YF YY++S++DGR+ +P+Q L DV F + ++
Sbjct: 151 IRYLEGQLALSFRSRLVAHAYRLYFSQQTYYRVSNMDGRLRNPDQSLTEDVVAFAASVAH 210
Query: 224 LVQDDLTAVTDGLLYTWRLCSYAS--------PKYVFWILAYVLGAGTMMRNFSPAFGKL 275
L + + D + ++ L A P + ++ ++ ++R FSP FG+L
Sbjct: 211 LYSNLTKPLLDVAVTSYTLLRAARSRGAGTAWPSAIAGLVVFL--TANVLRAFSPKFGEL 268
Query: 276 MSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFG 335
+++E + +GE R +HSR+ ++E IAFYGG E + +Q+ ++ L + ++L + W+
Sbjct: 269 VAEEARRKGELRYMHSRVVANSEEIAFYGGHEVELALLQRSYQDLASQINLILLERLWYV 328
Query: 336 MIQDFLLKYLGATVAVILIIEPFF--AGNLKPDTSTLGRAKM------LSNLRYHT---- 383
M++ FL+KY+ + ++++ P G + D + +A + L + R
Sbjct: 329 MLEQFLMKYVWSASGLLMVAVPIITATGYSESDAEAVKKAALEKKEEELVSERTEAFTIA 388
Query: 384 -SVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVI---------SRELSIEDKSP--- 430
+++ + ++ + S + + L+GY R+HE+ + R +ED
Sbjct: 389 RNLLTAAADAIERIMSSYKEVTELAGYTARVHEMFQVFEDVQRCHFKRPRELEDAQAGSG 448
Query: 431 --QRNGSR---------NYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 479
R+G R I + +VTP+G V+V +L ++VE G +LLITGP
Sbjct: 449 TIGRSGVRVEGPLKIRGQVVDVEQGIICENIPIVTPSGEVVVASLNIRVEEGMHLLITGP 508
Query: 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT- 538
NG GKSSLFR+LGGLWP G + KP + +FY+PQRPY +VG+LRDQ+IYP +
Sbjct: 509 NGCGKSSLFRILGGLWPTYGGVLYKPP-----PQRMFYIPQRPYMSVGSLRDQVIYPDSV 563
Query: 539 SDQEVEPLTHGGMVELLKNVDLEYLLDRYPP-EKEINWGDELSLGEQQRLGMARLFYHKP 597
D + + + + +L V L ++L R E +W D LS GE+QR+GMAR+FYH+P
Sbjct: 564 EDMQRKGYSEQDLEAILDVVHLHHILQREGGWEAMCDWKDVLSGGEKQRIGMARMFYHRP 623
Query: 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWR 654
K+A+LDECTSAV+ D+E + + G + ++I+HRP+L +H +L DGEG W+
Sbjct: 624 KYALLDECTSAVSIDVEGKIFQAAKDAGIALLSITHRPSLWKYHTHLLQFDGEGGWK 680
|
Probable transporter. The nucleotide-binding fold acts as an ATP-binding subunit with ATPase activity. Homo sapiens (taxid: 9606) |
| >sp|P48410|ABCD1_MOUSE ATP-binding cassette sub-family D member 1 OS=Mus musculus GN=Abcd1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (802), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 197/645 (30%), Positives = 342/645 (53%), Gaps = 64/645 (9%)
Query: 59 GDSERKPDKAVANRSNIKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLAL-VGIVVLR 117
G+ ++ A A ++ + + ++ + +L E G LLAL +V R
Sbjct: 51 GEPTQEASGATATKAGMNRVFLQRLLALLRLLFPRVLCRETG------LLALHSAALVSR 104
Query: 118 TALSNRLAKVQGFLFRAAFLRRVPLFF--QLISENILLCFLLSTMHSTSKYITGTLSLQF 175
T LS +A++ G L R +R+ P F QL+ + +L+ + ++S +Y+ G L+L F
Sbjct: 105 TFLSVYVARLDGRLARC-IVRKDPRAFSWQLL-QWLLIALPATFINSAIRYLEGQLALSF 162
Query: 176 RKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDG 235
R + + YF YY++S++DGR+ +P+Q L DV F + ++ L + + D
Sbjct: 163 RSRLVAHAYGLYFSQQTYYRVSNMDGRLRNPDQSLTEDVVAFAASVAHLYSNLTKPLLDV 222
Query: 236 LLYTWRLCSYAS--------PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYR 287
+ ++ L A P + ++ ++ ++R FSP FG+L+++E + +GE R
Sbjct: 223 AVTSYTLLRAARSRGAGTAWPSAIAGLVVFL--TANVLRAFSPKFGELVAEEARRKGELR 280
Query: 288 QLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGA 347
+HSR+ ++E IAFYGG E + +Q ++ L + ++L + W+ M++ FL+KY+ +
Sbjct: 281 YMHSRVVANSEEIAFYGGHEVELALLQHSYQDLASQINLILLERLWYVMLEQFLMKYVWS 340
Query: 348 TVAVILIIEPFF--AGNLKPDTSTLGRAKM---LSNLRYHTSVIISLFQSLGTLSI---- 398
++++ P G + D+ + +A + L + ++ ++L T +
Sbjct: 341 ASGLLMVAVPIITATGYAESDSEAMKKAALEMKEEELVSERTEAFTIARNLLTAAADATE 400
Query: 399 ----SSRRLNRLSGYADRIHELMVISRELS------IEDKSPQRNGSRNYFSEANYIE-- 446
S + + L+GY R++E+ + ++ D + G ++E
Sbjct: 401 RIMSSYKEVTELAGYTARVYEMFQVFEDVKHCRFKRTGDLEEAQAGPGVMVQSGVHVEGP 460
Query: 447 ---------------FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVL 491
+ ++TPTG V+V +L ++VE G +LLITGPNG GKSSLFR+L
Sbjct: 461 LKIQGQVVDVEQGIICENIPIITPTGEVVVASLNIRVEEGMHLLITGPNGCGKSSLFRIL 520
Query: 492 GGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS-DQEVEPLTHGG 550
GGLWP SG + KP + +FY+PQRPY +VG+LRDQ+IYP ++ D + +
Sbjct: 521 GGLWPTYSGVLYKPP-----PQRMFYIPQRPYMSVGSLRDQVIYPDSAEDMRRKGCSEQQ 575
Query: 551 MVELLKNVDLEYLLDRYPP-EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
+ +L V L ++L R E +W D LS GE+QR+GMAR+FYH+PK+A+LDECTSAV
Sbjct: 576 LEAILGIVHLRHILQREGGWEAVCDWKDVLSGGEKQRIGMARMFYHRPKYALLDECTSAV 635
Query: 610 TTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWR 654
+ D+E + + G + ++I+HRP+L +H +L DGEG W+
Sbjct: 636 SIDVEGKIFQAAKDAGIALLSITHRPSLWKYHTHLLQFDGEGGWK 680
|
Probable transporter. Could be involved in the import of VLCFA-CoA synthetase into the peroxisomal membrane. Mus musculus (taxid: 10090) |
| >sp|Q61285|ABCD2_MOUSE ATP-binding cassette sub-family D member 2 OS=Mus musculus GN=Abcd2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 308 bits (789), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 182/582 (31%), Positives = 312/582 (53%), Gaps = 51/582 (8%)
Query: 114 VVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSL 173
++ RT LS +A + G + ++ ++ F + + +++ + ++S +Y+ L+L
Sbjct: 114 LISRTFLSIYVAGLDGKIVKSIVEKKPRTFIIKLIKWLMIAIPATFVNSAIRYLECKLAL 173
Query: 174 QFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVT 233
FR + + YF N YYK+ ++DGR+ +P+Q L D+ F ++ L + +
Sbjct: 174 AFRTRLVDHAYETYFANQTYYKVINMDGRLANPDQSLTEDIMMFSQSVAHLYSNLTKPIL 233
Query: 234 DGLLYTWRLCSYAS--------PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGE 285
D +L ++ L A+ P + ++ Y +++ SP FG L+++E +G
Sbjct: 234 DVILTSYTLIRTATSRGASPIGPTLLAGLVVY--ATAKVLKACSPKFGSLVAEEAHRKGY 291
Query: 286 YRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYL 345
R +HSR+ + E IAFY G E +Q+ +KAL M ++L W+ MI+ FL+KY+
Sbjct: 292 LRYVHSRIIANVEEIAFYRGHKVEMKQLQKCYKALAYQMNLILSKRLWYIMIEQFLMKYV 351
Query: 346 GATVAVILIIEP------FFAGNLK--PDTSTLG-RAKMLSNLRYHTSVIISLFQSLGTL 396
++ +I++ P F G+L+ P + + R + + R +++ S ++ +
Sbjct: 352 WSSCGLIMVAIPIITATGFADGDLEDGPKQAMVSDRTEAFTTAR---NLLASGADAIERI 408
Query: 397 SISSRRLNRLSGYADRIHELM---------VISRELSIEDKSPQRNGSRNYFSEANYIEF 447
S + + L+GY R++ + + R ++ E ++ + G ++ +
Sbjct: 409 MSSYKEITELAGYTARVYNMFWVFDEVKRGIYKRTVTQEPENHSKRGGNLELPLSDTLAI 468
Query: 448 SG-------------VKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL 494
G V ++TP G V+ L KVE G +LLITGPNG GKSSLFR+L GL
Sbjct: 469 KGTVIDVDHGIICENVPIITPAGEVVASRLNFKVEEGMHLLITGPNGCGKSSLFRILSGL 528
Query: 495 WPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP-LTHGGMVE 553
WP+ G + KP + +FY+PQRPY ++G+LRDQ+IYP ++D E T +
Sbjct: 529 WPVYEGVLYKPP-----PQHMFYIPQRPYMSLGSLRDQVIYPDSADDMREKGYTDQDLER 583
Query: 554 LLKNVDLEYLLDRYPP-EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612
+L +V L +++ R + ++W D LS GE+QR+GMAR+FYHKPK+A+LDECTSAV+ D
Sbjct: 584 ILHSVHLYHIVQREGGWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSID 643
Query: 613 MEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWR 654
+E + G S ++I+HRP+L +H +L DGEG WR
Sbjct: 644 VEGKIFQAAIGAGISLLSITHRPSLWKYHTHLLQFDGEGGWR 685
|
Probable transporter. Mus musculus (taxid: 10090) |
| >sp|Q9QY44|ABCD2_RAT ATP-binding cassette sub-family D member 2 OS=Rattus norvegicus GN=Abcd2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 308 bits (788), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 208/722 (28%), Positives = 355/722 (49%), Gaps = 122/722 (16%)
Query: 695 KKDSAFSNPKAQS----YVSEVIAASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLV 750
+K A P A++ + +E+I P N F QL L LR K+L
Sbjct: 50 RKAKAEDYPPAENRERLHCTEIICKKPAPGLNADF--FKQL------LELR-----KILF 96
Query: 751 PTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAA 810
P + + L + ++SRT++S +A L+G VK ++E+ +F+ + ++ +
Sbjct: 97 PKLVTTETGWLCLHSVALISRTFLSIYVAGLDGKIVKSIVEKKPRTFIIKLVKWLMIAVP 156
Query: 811 SSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEK 870
++F+ +IR+L +LAL +R R+ H ++Y ++YKV NM + + DQ +T D+
Sbjct: 157 ATFVNSAIRYLECKLALAFRTRLVDHAYETYFANQTYYKVINMDGRLANPDQSLTEDIMM 216
Query: 871 LTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGL------GFLRSVTP 924
+ ++ L + + KP +D++ ++ + RG + + +L GL L++ +P
Sbjct: 217 FSQSVAHLYSNLTKPILDVILTSYTLIRTATSRGASPIGPTLLAGLVVYATAKVLKACSP 276
Query: 925 EFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKK 984
+FG L + E +G R++H R+ A+ E +AF+ G E ++ ++ L L+L K
Sbjct: 277 KFGTLVAEEAHRKGYLRYVHSRIIANVEEIAFYRGHKVEMKQLQKCYKALAYQMNLILSK 336
Query: 985 KWLFGILDDFVTKQLPHN---VTWGLSLLYA-------MEHKGDRALVSTQGE-LAHALR 1033
+ + +++ F+ K + + + ++ A +E +A+VS + E A
Sbjct: 337 RLWYIMIEQFLMKYVWSGCGLIMVAIPIITATGFADGDLEDGPKQAMVSDRTEAFTTARN 396
Query: 1034 FLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLD-----------AAQPGDDE 1082
LAS A I+ +++ EL+G R++ + + D +P ++
Sbjct: 397 LLASGAD----AIERIMSSYKEITELAGYTARVYNMFWVFDEVKRGIYKRTVTQEPENNS 452
Query: 1083 ISGSSQH---------KWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTG 1133
SG K D I + IITP+ +++A L F++ G LL+TG
Sbjct: 453 KSGGGLELPLSDTLAIKGTVIDVDHGILCENVPIITPAGEVVASSLNFKVEEGMHLLITG 512
Query: 1134 PNGSGKSSVFRVLRGLWPVVSGSLTK-PSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQI 1192
PNG GKSS+FR+L GLWPV G L K P QH +FY+PQRPY LG+LRDQ+
Sbjct: 513 PNGCGKSSLFRILSGLWPVYEGVLYKPPPQH----------MFYIPQRPYMSLGSLRDQV 562
Query: 1193 IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252
IYP S ++ +H KG D L+ IL V L ++++RE GWDA ++W
Sbjct: 563 IYPDSVDD-------MHEKG--------YTDRDLEHILHSVHLYHIVQREG-GWDAVMDW 606
Query: 1253 EDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKF 1312
+D+LS GE+QR+GM AR+F+HKPK+
Sbjct: 607 KDVLSGGEKQRMGM------------------------------------ARMFYHKPKY 630
Query: 1313 GILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1372
+LDECT+A S+DVE ++++ A GI+ ++ + RP+L +H+ L+ DGEG W +
Sbjct: 631 ALLDECTSAVSIDVEGKIFQAAIGAGISLLSITHRPSLWKYHTHLLQF-DGEGGWRFEQL 689
Query: 1373 SS 1374
+
Sbjct: 690 DT 691
|
Probable transporter. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1374 | ||||||
| 224083701 | 1309 | peroxisomal membrane ABC transporter fam | 0.950 | 0.997 | 0.793 | 0.0 | |
| 356540293 | 1339 | PREDICTED: ABC transporter D family memb | 0.967 | 0.992 | 0.794 | 0.0 | |
| 356540295 | 1354 | PREDICTED: ABC transporter D family memb | 0.967 | 0.981 | 0.786 | 0.0 | |
| 356528475 | 1342 | PREDICTED: ABC transporter D family memb | 0.970 | 0.994 | 0.789 | 0.0 | |
| 356512707 | 1319 | PREDICTED: ABC transporter D family memb | 0.951 | 0.991 | 0.787 | 0.0 | |
| 357463371 | 1349 | ABC transporter D family member [Medicag | 0.967 | 0.985 | 0.778 | 0.0 | |
| 357463369 | 1356 | ABC transporter D family member [Medicag | 0.967 | 0.980 | 0.775 | 0.0 | |
| 18478510 | 1337 | peroxisomal ABC transporter [Arabidopsis | 0.967 | 0.994 | 0.773 | 0.0 | |
| 18420546 | 1337 | ABC transporter D family member 1 [Arabi | 0.967 | 0.994 | 0.773 | 0.0 | |
| 255549548 | 1339 | peroxisomal abc transporter, putative [R | 0.955 | 0.980 | 0.794 | 0.0 |
| >gi|224083701|ref|XP_002307090.1| peroxisomal membrane ABC transporter family, PMP family [Populus trichocarpa] gi|222856539|gb|EEE94086.1| peroxisomal membrane ABC transporter family, PMP family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2226 bits (5769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1090/1373 (79%), Positives = 1196/1373 (87%), Gaps = 67/1373 (4%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L LTEHGRGIL+SRRK++L A+GIL AGGTA Y++SR SKK D+F +YNG+ D
Sbjct: 1 MPSLQLLQLTEHGRGILASRRKSLLFAAGILAAGGTAVYVQSRIRSKKSDSFLYYNGIKD 60
Query: 61 SERKPDKAVANRSNIKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTAL 120
++ DK V N KK QKKGGLK+LQ+LA++LLS MGK GA+DLLA++ I VL+T L
Sbjct: 61 DKKISDKLVTNG---KKTVQKKGGLKALQILASVLLSHMGKTGAKDLLAMIAIAVLKTTL 117
Query: 121 SNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180
SNRLAKVQGFLFRAAFL+RVPLFF+LISENILLCFLLST++STSKY+TGTLSL FRKI+T
Sbjct: 118 SNRLAKVQGFLFRAAFLQRVPLFFRLISENILLCFLLSTINSTSKYVTGTLSLCFRKILT 177
Query: 181 KLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240
K+IH YFENMAYYKISHVDGRIT+PEQR+ASDVPRFCSELSELV DDLTAVTDGLLYTW
Sbjct: 178 KVIHAHYFENMAYYKISHVDGRITNPEQRIASDVPRFCSELSELVLDDLTAVTDGLLYTW 237
Query: 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESI 300
RLCSYASPKY+FW++AYVLGAGT++RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESI
Sbjct: 238 RLCSYASPKYLFWMVAYVLGAGTLIRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESI 297
Query: 301 AFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFA 360
AFYGGEN+EE HIQQKFK L HMR VLHDHWWFGMIQDFLLKY GATVAVILIIEPFFA
Sbjct: 298 AFYGGENREEFHIQQKFKTLIGHMRTVLHDHWWFGMIQDFLLKYFGATVAVILIIEPFFA 357
Query: 361 GNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVIS 420
G L+PD STLGRA+MLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHEL+ +S
Sbjct: 358 GQLRPDASTLGRAEMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELIAVS 417
Query: 421 RELSIEDKSP-QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 479
RELS DKS QR+GSRNYFSEANY+EF GVKVVTP+GNVLV++LTLKV+ GSNLLITGP
Sbjct: 418 RELSNGDKSSLQRSGSRNYFSEANYVEFFGVKVVTPSGNVLVQDLTLKVDSGSNLLITGP 477
Query: 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS 539
NGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT+
Sbjct: 478 NGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTA 537
Query: 540 DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599
DQE+EPLTH GMVELLKNVDLEYLLDRYPPEKE+NWG+ELSLGEQQRLGMARLFYHKPKF
Sbjct: 538 DQEIEPLTHSGMVELLKNVDLEYLLDRYPPEKEVNWGEELSLGEQQRLGMARLFYHKPKF 597
Query: 600 AILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKR 659
AILDECTSAVTTDMEERFCA+V+AMGTSCITISHRPALVAFHDVVLSLDGEG W V+ K
Sbjct: 598 AILDECTSAVTTDMEERFCAQVQAMGTSCITISHRPALVAFHDVVLSLDGEGGWLVNYKG 657
Query: 660 DGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIA 719
S +T++G ++ ET+R++DAM V++AF T+ K + SY+SEVIAASP
Sbjct: 658 KDSPALTEAGGDLTGDFETERKNDAMIVQKAFSTSDKAT-------HSYISEVIAASPNI 710
Query: 720 DHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIA 779
DHNV LP+ P L+ APR LPLRVA MFK+LVPT+ DKQGA LLAVAFLV+SRT++SDRIA
Sbjct: 711 DHNVLLPIVPPLQRAPRALPLRVAAMFKILVPTILDKQGAHLLAVAFLVISRTFVSDRIA 770
Query: 780 SLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLK 839
SLNGTTVK+VLEQDKASFVRLIGVSVLQSAASSFIAPS+RHLT RLALGWRIR+TQHLLK
Sbjct: 771 SLNGTTVKFVLEQDKASFVRLIGVSVLQSAASSFIAPSLRHLTTRLALGWRIRLTQHLLK 830
Query: 840 SYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKAL 899
+YLR N+FYKVF+MSSK+IDADQRITHDLEKLTTDLSGLVTGMVKP VDILWFTWRMK L
Sbjct: 831 NYLRNNTFYKVFHMSSKNIDADQRITHDLEKLTTDLSGLVTGMVKPLVDILWFTWRMKLL 890
Query: 900 TGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGG 959
TGQRGVAILY YMLLGLGFLR+VTP+FGDL S EQQLEGTFRFMHERLR HAESVAFFGG
Sbjct: 891 TGQRGVAILYTYMLLGLGFLRAVTPDFGDLASEEQQLEGTFRFMHERLRTHAESVAFFGG 950
Query: 960 GAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDR 1019
G REKAMIESRFRELL+HS+LLLKKKW +GILDDFVTKQLPHNVTWGLSLLYAMEHKGDR
Sbjct: 951 GKREKAMIESRFRELLDHSMLLLKKKWSYGILDDFVTKQLPHNVTWGLSLLYAMEHKGDR 1010
Query: 1020 ALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPG 1079
A+ STQGELAHALRFLASVVSQSFLAFGDILELH+KF ELSG INRIFELEELLDAAQ
Sbjct: 1011 AMTSTQGELAHALRFLASVVSQSFLAFGDILELHKKFAELSGSINRIFELEELLDAAQ-- 1068
Query: 1080 DDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGK 1139
D+ISF ++DIITP+QKLLARQLTF+I KSLL+TGPNGSGK
Sbjct: 1069 -----------------SDAISFMEVDIITPAQKLLARQLTFDIEQRKSLLLTGPNGSGK 1111
Query: 1140 SSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSRE 1199
SSVFRVLRGLWP+ SG + KPSQHI +E GSGC +FYVPQRPYTCLGTLRDQIIYPLSR+
Sbjct: 1112 SSVFRVLRGLWPIASGRIAKPSQHISKETGSGCAVFYVPQRPYTCLGTLRDQIIYPLSRD 1171
Query: 1200 EAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLG 1259
EAE+ L+L+ KG+ + TN+LDS LK ILE VRL+YLLERE GWDAN+NWED LSLG
Sbjct: 1172 EAEVMTLELYEKGKLSTEITNMLDSCLKNILENVRLNYLLEREG-GWDANMNWEDTLSLG 1230
Query: 1260 EQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECT 1319
EQQRLGM ARLFFHKPKF ILDECT
Sbjct: 1231 EQQRLGM------------------------------------ARLFFHKPKFAILDECT 1254
Query: 1320 NATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1372
NATSVDVEEQLYRLA DMGITF+TSSQRPALIPFHSLELRLIDGEG+WELR I
Sbjct: 1255 NATSVDVEEQLYRLASDMGITFITSSQRPALIPFHSLELRLIDGEGHWELRAI 1307
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540293|ref|XP_003538624.1| PREDICTED: ABC transporter D family member 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2210 bits (5727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1097/1380 (79%), Positives = 1197/1380 (86%), Gaps = 51/1380 (3%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
M SLQ L LT G+ L+SRR+T+LLASGIL+AGGTAAY++SRF K D FGH NG +
Sbjct: 1 MSSLQLLQLTRRGQSFLASRRRTLLLASGILIAGGTAAYVQSRFRVNKHDLFGHCNGHNN 60
Query: 61 SERKPDKAVANRSNIKKAN----QKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVL 116
DK V +K + ++K GLKSLQVLAAILLS MGK GARDLL LV I VL
Sbjct: 61 -----DKEVTEEEVVKGVSAPKKKQKKGLKSLQVLAAILLSGMGKFGARDLLGLVVIAVL 115
Query: 117 RTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFR 176
RTALSNRLAKVQGFLFRAAFLRRVPLF +LISENILLCFLLST+HSTSKYITGTLSL FR
Sbjct: 116 RTALSNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTIHSTSKYITGTLSLHFR 175
Query: 177 KIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGL 236
KI+TKLIH+ YFENM YYKISHVDGRIT+PEQR+ASDVPRFCSELSE+VQDDLTAVTDGL
Sbjct: 176 KILTKLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTDGL 235
Query: 237 LYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTH 296
LYTWRLCSYASPKYV WIL YVLGAG +RNFSP+FGKLMSKEQQLEGEYRQLH+RLRTH
Sbjct: 236 LYTWRLCSYASPKYVVWILVYVLGAGAAIRNFSPSFGKLMSKEQQLEGEYRQLHARLRTH 295
Query: 297 AESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIE 356
+ESIAFYGGE KEE+HIQQKFK L RHM VLHDHWWFGMIQD LLKYLGATVAVILIIE
Sbjct: 296 SESIAFYGGERKEETHIQQKFKTLVRHMYSVLHDHWWFGMIQDLLLKYLGATVAVILIIE 355
Query: 357 PFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHEL 416
PFF+G+L+PD+STLGRA MLSNLRYHTSVIISLFQSLGTLSIS+RRLNRLSGYADRI+EL
Sbjct: 356 PFFSGHLRPDSSTLGRADMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYEL 415
Query: 417 MVISRELSI--EDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNL 474
M +SRELS+ E S QRN SRN EANYIEF GVKVVTPTGNVLV++LTL+VE GSNL
Sbjct: 416 MAVSRELSLVNEKSSLQRNASRNCIREANYIEFDGVKVVTPTGNVLVDDLTLRVESGSNL 475
Query: 475 LITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI 534
LITGPNGSGKSSLFRVLGGLWPL+SGHI KPG+GSDLN EIFYVPQRPYTAVGTLRDQLI
Sbjct: 476 LITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNNEIFYVPQRPYTAVGTLRDQLI 535
Query: 535 YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594
YPLT DQE+EPLT GMVELLKNVDLEYLLDRYPPE+E+NWGDELSLGEQQRLGMARLFY
Sbjct: 536 YPLTEDQEIEPLTDRGMVELLKNVDLEYLLDRYPPEREVNWGDELSLGEQQRLGMARLFY 595
Query: 595 HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWR 654
HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W
Sbjct: 596 HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWS 655
Query: 655 VHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIA 714
VH KR+GSS T+ GI+ +K+SET RQSDA AV++AF +KKDSAFSNPKAQSY +EVI+
Sbjct: 656 VHYKREGSS--TEVGIDTMKASETKRQSDAKAVQRAFSMSKKDSAFSNPKAQSYFAEVIS 713
Query: 715 ASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWI 774
+SP +H +P V PQL R+LPLRVA M KVLVPTV DKQGAQLLAVAFLVVSRTW+
Sbjct: 714 SSPSMNHTIPPSVVPQLHCNTRVLPLRVAAMCKVLVPTVLDKQGAQLLAVAFLVVSRTWV 773
Query: 775 SDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMT 834
SDRIASLNGTTVK+VLEQDKASF+RLIG+SVLQS ASSFIAPSIRHLTARLALGWR+R+T
Sbjct: 774 SDRIASLNGTTVKFVLEQDKASFIRLIGLSVLQSVASSFIAPSIRHLTARLALGWRVRLT 833
Query: 835 QHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTW 894
QHLLK+YLR N+FYKVF+M++K+IDADQRITHDLEKLT DLSGLVTGMVKPSVDILWFTW
Sbjct: 834 QHLLKNYLRNNAFYKVFHMANKNIDADQRITHDLEKLTADLSGLVTGMVKPSVDILWFTW 893
Query: 895 RMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESV 954
RMK LTGQRGVAILYAYMLLGLGFLR+VTP+FG+L S+EQQLEGTFRFMHERL HAESV
Sbjct: 894 RMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGNLISQEQQLEGTFRFMHERLCTHAESV 953
Query: 955 AFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME 1014
AFFGGGAREKAM+ESRFRELL HS LLKKKWLFGILDDF+TKQLPHNVTW LSLLYAME
Sbjct: 954 AFFGGGAREKAMVESRFRELLSHSKYLLKKKWLFGILDDFITKQLPHNVTWLLSLLYAME 1013
Query: 1015 HKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLD 1074
HKGDRA +STQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLD
Sbjct: 1014 HKGDRASISTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLD 1073
Query: 1075 AAQPGDDEISGSSQHKWNSTDY--QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVT 1132
A+Q G S +S DY +D+ISF +DI+TP+QK+LAR+LT +I GKSLLVT
Sbjct: 1074 ASQSGTSGDSINSSITSPIWDYHGKDAISFCMVDIVTPTQKMLARELTCDIEFGKSLLVT 1133
Query: 1133 GPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQI 1192
GPNGSGKSS+FRVLRGLWP+ SG L++PS+ +D EAGSGCGIFYVPQRPYTCLGTLRDQI
Sbjct: 1134 GPNGSGKSSIFRVLRGLWPIASGRLSRPSEDVDLEAGSGCGIFYVPQRPYTCLGTLRDQI 1193
Query: 1193 IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252
IYPLSREEA+ +ALK+HGKGEK D +LD++L+ ILE VRL+YLLER+ GWDANLNW
Sbjct: 1194 IYPLSREEAQFQALKMHGKGEKHPDLRIMLDTHLQVILENVRLNYLLERDNNGWDANLNW 1253
Query: 1253 EDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKF 1312
EDILSLGEQQRLGM ARLFFHKPKF
Sbjct: 1254 EDILSLGEQQRLGM------------------------------------ARLFFHKPKF 1277
Query: 1313 GILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1372
GILDECTNATSVDVEE LY LA MGIT VTSSQRPALIPFHS+EL LIDGEGNWELR+I
Sbjct: 1278 GILDECTNATSVDVEEHLYGLANKMGITVVTSSQRPALIPFHSMELHLIDGEGNWELRSI 1337
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540295|ref|XP_003538625.1| PREDICTED: ABC transporter D family member 1-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2200 bits (5701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1097/1395 (78%), Positives = 1197/1395 (85%), Gaps = 66/1395 (4%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
M SLQ L LT G+ L+SRR+T+LLASGIL+AGGTAAY++SRF K D FGH NG +
Sbjct: 1 MSSLQLLQLTRRGQSFLASRRRTLLLASGILIAGGTAAYVQSRFRVNKHDLFGHCNGHNN 60
Query: 61 SERKPDKAVANRSNIKKAN----QKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVL 116
DK V +K + ++K GLKSLQVLAAILLS MGK GARDLL LV I VL
Sbjct: 61 -----DKEVTEEEVVKGVSAPKKKQKKGLKSLQVLAAILLSGMGKFGARDLLGLVVIAVL 115
Query: 117 RTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFR 176
RTALSNRLAKVQGFLFRAAFLRRVPLF +LISENILLCFLLST+HSTSKYITGTLSL FR
Sbjct: 116 RTALSNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTIHSTSKYITGTLSLHFR 175
Query: 177 KIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGL 236
KI+TKLIH+ YFENM YYKISHVDGRIT+PEQR+ASDVPRFCSELSE+VQDDLTAVTDGL
Sbjct: 176 KILTKLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTDGL 235
Query: 237 LYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTH 296
LYTWRLCSYASPKYV WIL YVLGAG +RNFSP+FGKLMSKEQQLEGEYRQLH+RLRTH
Sbjct: 236 LYTWRLCSYASPKYVVWILVYVLGAGAAIRNFSPSFGKLMSKEQQLEGEYRQLHARLRTH 295
Query: 297 AESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIE 356
+ESIAFYGGE KEE+HIQQKFK L RHM VLHDHWWFGMIQD LLKYLGATVAVILIIE
Sbjct: 296 SESIAFYGGERKEETHIQQKFKTLVRHMYSVLHDHWWFGMIQDLLLKYLGATVAVILIIE 355
Query: 357 PFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHEL 416
PFF+G+L+PD+STLGRA MLSNLRYHTSVIISLFQSLGTLSIS+RRLNRLSGYADRI+EL
Sbjct: 356 PFFSGHLRPDSSTLGRADMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYEL 415
Query: 417 MVISRELSI--EDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNL 474
M +SRELS+ E S QRN SRN EANYIEF GVKVVTPTGNVLV++LTL+VE GSNL
Sbjct: 416 MAVSRELSLVNEKSSLQRNASRNCIREANYIEFDGVKVVTPTGNVLVDDLTLRVESGSNL 475
Query: 475 LITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI 534
LITGPNGSGKSSLFRVLGGLWPL+SGHI KPG+GSDLN EIFYVPQRPYTAVGTLRDQLI
Sbjct: 476 LITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNNEIFYVPQRPYTAVGTLRDQLI 535
Query: 535 YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594
YPLT DQE+EPLT GMVELLKNVDLEYLLDRYPPE+E+NWGDELSLGEQQRLGMARLFY
Sbjct: 536 YPLTEDQEIEPLTDRGMVELLKNVDLEYLLDRYPPEREVNWGDELSLGEQQRLGMARLFY 595
Query: 595 HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWR 654
HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W
Sbjct: 596 HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWS 655
Query: 655 VHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIA 714
VH KR+GSS T+ GI+ +K+SET RQSDA AV++AF +KKDSAFSNPKAQSY +EVI+
Sbjct: 656 VHYKREGSS--TEVGIDTMKASETKRQSDAKAVQRAFSMSKKDSAFSNPKAQSYFAEVIS 713
Query: 715 ASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWI 774
+SP +H +P V PQL R+LPLRVA M KVLVPTV DKQGAQLLAVAFLVVSRTW+
Sbjct: 714 SSPSMNHTIPPSVVPQLHCNTRVLPLRVAAMCKVLVPTVLDKQGAQLLAVAFLVVSRTWV 773
Query: 775 SDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMT 834
SDRIASLNGTTVK+VLEQDKASF+RLIG+SVLQS ASSFIAPSIRHLTARLALGWR+R+T
Sbjct: 774 SDRIASLNGTTVKFVLEQDKASFIRLIGLSVLQSVASSFIAPSIRHLTARLALGWRVRLT 833
Query: 835 QHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTW 894
QHLLK+YLR N+FYKVF+M++K+IDADQRITHDLEKLT DLSGLVTGMVKPSVDILWFTW
Sbjct: 834 QHLLKNYLRNNAFYKVFHMANKNIDADQRITHDLEKLTADLSGLVTGMVKPSVDILWFTW 893
Query: 895 RMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESV 954
RMK LTGQRGVAILYAYMLLGLGFLR+VTP+FG+L S+EQQLEGTFRFMHERL HAESV
Sbjct: 894 RMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGNLISQEQQLEGTFRFMHERLCTHAESV 953
Query: 955 AFFGGGAREKA---------------MIESRFRELLEHSLLLLKKKWLFGILDDFVTKQL 999
AFFGGGAREKA M+ESRFRELL HS LLKKKWLFGILDDF+TKQL
Sbjct: 954 AFFGGGAREKAVSFCMSLFYYLNFLQMVESRFRELLSHSKYLLKKKWLFGILDDFITKQL 1013
Query: 1000 PHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVEL 1059
PHNVTW LSLLYAMEHKGDRA +STQGELAHALRFLASVVSQSFLAFGDILELHRKFVEL
Sbjct: 1014 PHNVTWLLSLLYAMEHKGDRASISTQGELAHALRFLASVVSQSFLAFGDILELHRKFVEL 1073
Query: 1060 SGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDY--QDSISFSKLDIITPSQKLLAR 1117
SGGINRIFELEELLDA+Q G S +S DY +D+ISF +DI+TP+QK+LAR
Sbjct: 1074 SGGINRIFELEELLDASQSGTSGDSINSSITSPIWDYHGKDAISFCMVDIVTPTQKMLAR 1133
Query: 1118 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 1177
+LT +I GKSLLVTGPNGSGKSS+FRVLRGLWP+ SG L++PS+ +D EAGSGCGIFYV
Sbjct: 1134 ELTCDIEFGKSLLVTGPNGSGKSSIFRVLRGLWPIASGRLSRPSEDVDLEAGSGCGIFYV 1193
Query: 1178 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY 1237
PQRPYTCLGTLRDQIIYPLSREEA+ +ALK+HGKGEK D +LD++L+ ILE VRL+Y
Sbjct: 1194 PQRPYTCLGTLRDQIIYPLSREEAQFQALKMHGKGEKHPDLRIMLDTHLQVILENVRLNY 1253
Query: 1238 LLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFP 1297
LLER+ GWDANLNWEDILSLGEQQRLGM
Sbjct: 1254 LLERDNNGWDANLNWEDILSLGEQQRLGM------------------------------- 1282
Query: 1298 PFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLE 1357
ARLFFHKPKFGILDECTNATSVDVEE LY LA MGIT VTSSQRPALIPFHS+E
Sbjct: 1283 -----ARLFFHKPKFGILDECTNATSVDVEEHLYGLANKMGITVVTSSQRPALIPFHSME 1337
Query: 1358 LRLIDGEGNWELRTI 1372
L LIDGEGNWELR+I
Sbjct: 1338 LHLIDGEGNWELRSI 1352
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528475|ref|XP_003532828.1| PREDICTED: ABC transporter D family member 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2199 bits (5697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1088/1378 (78%), Positives = 1188/1378 (86%), Gaps = 44/1378 (3%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
M SLQ LT+HGR L+SRRKT+LLA+GILVAGGT AY++SRF + D G +
Sbjct: 1 MSSLQLFQLTQHGRSFLASRRKTLLLATGILVAGGTTAYVQSRFRVNRDDLLGDSYECNN 60
Query: 61 SERKPDKAVANRSNIKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTAL 120
+ + V ++ K QKKGGLKSLQVLAAILLSEMG++GA++LLALV IVVLRT L
Sbjct: 61 DKELTKEEVMKGTSAPKNKQKKGGLKSLQVLAAILLSEMGQLGAKNLLALVSIVVLRTTL 120
Query: 121 SNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180
SNRLAKVQGFLFRAAFLRRVPLF +LISENILLCFLLSTM STSKYITGTLSL FRKI+T
Sbjct: 121 SNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTMQSTSKYITGTLSLHFRKILT 180
Query: 181 KLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240
KLIH+RYFENM YYKISHVDGRIT+PEQR+ASDVPRFCSELSE+VQDDLTAVTDGLLYTW
Sbjct: 181 KLIHSRYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTDGLLYTW 240
Query: 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESI 300
RLCSYASPKY+FWILAYVLGAG +RNFSPAFGKLMS+EQ+LEG YRQLHSRLRTH+ESI
Sbjct: 241 RLCSYASPKYIFWILAYVLGAGAAIRNFSPAFGKLMSREQELEGGYRQLHSRLRTHSESI 300
Query: 301 AFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFA 360
AFYGGE +EE+HIQQKF+ L RH+ VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF+
Sbjct: 301 AFYGGEKREEAHIQQKFRTLVRHINRVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFS 360
Query: 361 GNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVIS 420
G+L+PD+STLGRA+MLSNLRYHTSVIISLFQSLGTLSIS+RRLNRLSGYADRIHELM IS
Sbjct: 361 GHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIHELMAIS 420
Query: 421 RELSIED--KSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITG 478
RELS+E+ S QR GSRN SEANY+ F GVKVVTPTGNVLV +LTLKVE GSNLLITG
Sbjct: 421 RELSLENGKSSLQRQGSRNCISEANYVGFYGVKVVTPTGNVLVNDLTLKVESGSNLLITG 480
Query: 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 538
PNGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT
Sbjct: 481 PNGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 540
Query: 539 SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598
DQEVEPLT MVELLKNVDLEYLLDRYPPEKE+NWGDELSLGEQQRLGMARLFYHKPK
Sbjct: 541 VDQEVEPLTDSRMVELLKNVDLEYLLDRYPPEKEVNWGDELSLGEQQRLGMARLFYHKPK 600
Query: 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDK 658
FAILDECTSAVTTDMEERFCA V AMGTSCITISHRPALVAFHDVVLSLDGEG W VH +
Sbjct: 601 FAILDECTSAVTTDMEERFCANVLAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHHR 660
Query: 659 RDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEV-IAASP 717
R+ SS T+ G +M+K+SET RQSDA AV++AF KKDSAF N KAQS +SEV IA+SP
Sbjct: 661 REDSS--TELGNDMMKASETKRQSDAKAVQRAFAMNKKDSAFLNSKAQSDISEVIIASSP 718
Query: 718 IADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDR 777
N+ PQL R LP+RVA M KVLVPT+FDKQGA+LLAV FLVVSRTW+SDR
Sbjct: 719 SMKRNISPSAVPQLHGNTRALPMRVAAMCKVLVPTIFDKQGARLLAVVFLVVSRTWVSDR 778
Query: 778 IASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837
IASLNGTTVK VLEQDKASF+RLIG+SVLQSAASSFIAPSIRHLTARLALG R +TQHL
Sbjct: 779 IASLNGTTVKLVLEQDKASFIRLIGLSVLQSAASSFIAPSIRHLTARLALGGRTHLTQHL 838
Query: 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 897
LK+YLR N+FYKVF+M+SK+IDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK
Sbjct: 839 LKNYLRNNAFYKVFHMASKNIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 898
Query: 898 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFF 957
LTG+RGVAILYAYMLLGLGFLR+VTP+FG+L S+EQQLEGTFRFMHERL HAESVAFF
Sbjct: 899 MLTGRRGVAILYAYMLLGLGFLRTVTPDFGNLISQEQQLEGTFRFMHERLCTHAESVAFF 958
Query: 958 GGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG 1017
GGGAREKAM+ESRFRELL HS LLKKKWLFGILDDF+TKQLPHNVTWGLSL+YAMEHKG
Sbjct: 959 GGGAREKAMVESRFRELLTHSEYLLKKKWLFGILDDFITKQLPHNVTWGLSLIYAMEHKG 1018
Query: 1018 DRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQ 1077
DRA V+TQGELAHALRFLASVVSQSFLAFGDILEL++KFVELSGGINRIFELEELLDAAQ
Sbjct: 1019 DRASVTTQGELAHALRFLASVVSQSFLAFGDILELNKKFVELSGGINRIFELEELLDAAQ 1078
Query: 1078 PG---DDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGP 1134
G ++ S S+ D ISFSK+DIITP+QK+L R+L +I G SLLVTGP
Sbjct: 1079 SGICTENFTSVSAIPPMRDVHSSDVISFSKVDIITPAQKMLVRELICDIKRGGSLLVTGP 1138
Query: 1135 NGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIY 1194
NGSGKSS+FRVLRGLWP+ SG L++PS+ +DEE GSGCGIFYVPQRPYTCLGTLRDQIIY
Sbjct: 1139 NGSGKSSIFRVLRGLWPIASGRLSRPSEVVDEEDGSGCGIFYVPQRPYTCLGTLRDQIIY 1198
Query: 1195 PLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254
PLSREEAE++ALK++GKGEK DT N+LD+ LK ILE VRL+YLLERE WDANL WED
Sbjct: 1199 PLSREEAEVKALKMYGKGEKHADTRNLLDTRLKVILESVRLNYLLEREGSNWDANLKWED 1258
Query: 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGI 1314
ILSLGEQQRLGM ARLFFH+PKFGI
Sbjct: 1259 ILSLGEQQRLGM------------------------------------ARLFFHEPKFGI 1282
Query: 1315 LDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1372
LDECTNATSVDVEE LY LAKDMGIT VTSSQRPALIPFHS+ELRLIDGEGNW+LR I
Sbjct: 1283 LDECTNATSVDVEEHLYGLAKDMGITVVTSSQRPALIPFHSMELRLIDGEGNWKLRLI 1340
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512707|ref|XP_003525058.1| PREDICTED: ABC transporter D family member 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2183 bits (5656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1088/1381 (78%), Positives = 1184/1381 (85%), Gaps = 73/1381 (5%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
M SLQ LT HGR L+SRRKT+LLA+GILVAGGTAAY++SRF + D LGD
Sbjct: 1 MSSLQLFQLTHHGRSFLASRRKTLLLATGILVAGGTAAYVQSRFRGNRDDL------LGD 54
Query: 61 S-ERKPDKAVANRSNIK-----KANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIV 114
S ER DK + +K K QKKGGLKSLQVLAAILLSEMG++GA++LL+LV IV
Sbjct: 55 SYERNNDKELTKEEVMKGTSAPKNKQKKGGLKSLQVLAAILLSEMGQLGAKNLLSLVSIV 114
Query: 115 VLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQ 174
VLRT LSNRLAKVQGFLFRAAFLRRVPLF +LISENILLCFLLSTM STSKYITGTLSL
Sbjct: 115 VLRTTLSNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTMQSTSKYITGTLSLH 174
Query: 175 FRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTD 234
FRKI+TKLIH+RYFENM YYKISHVDGRIT+PEQR+ASDVPRFCSELSE+VQDDLTAVTD
Sbjct: 175 FRKILTKLIHSRYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTD 234
Query: 235 GLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLR 294
GLLYTWRLCSYASPKY+FWILAYVLGAG +RNFSPAFGKLMS+EQ+LEGEYRQLHSRLR
Sbjct: 235 GLLYTWRLCSYASPKYIFWILAYVLGAGATIRNFSPAFGKLMSREQELEGEYRQLHSRLR 294
Query: 295 THAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILI 354
TH+ESIAFYGGE +EE+HIQQKF+ L RH+ VLHDHWWFGMIQDFLLKYLGATVAVILI
Sbjct: 295 THSESIAFYGGERREEAHIQQKFRTLVRHINRVLHDHWWFGMIQDFLLKYLGATVAVILI 354
Query: 355 IEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIH 414
IEPFF+G+L+PD+STLGRA+MLSNLRYHTSVIISLFQSLGTLSIS+RRLNRLSGYADRIH
Sbjct: 355 IEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIH 414
Query: 415 ELMVISRELSIED--KSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGS 472
ELM ISRELS+++ S QR GSRNY SEANY+ F GVKVVTPTGNVLV++LTLKV+ GS
Sbjct: 415 ELMAISRELSLDNGKSSLQRQGSRNYISEANYVGFYGVKVVTPTGNVLVDDLTLKVQSGS 474
Query: 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQ 532
NLLITGPNGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPYTAVGTLRDQ
Sbjct: 475 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYTAVGTLRDQ 534
Query: 533 LIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592
LIYPLT+DQEVEPLT MVELLKNVDLEYLLDRYP E E+NWGDELSLGEQQRLGMARL
Sbjct: 535 LIYPLTADQEVEPLTDSRMVELLKNVDLEYLLDRYPSETEVNWGDELSLGEQQRLGMARL 594
Query: 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGE 652
FYHKPKFAILDECTSAVTTDMEERFCA V AMGTSCITISHRPALVAFHDVVLSLDGEG
Sbjct: 595 FYHKPKFAILDECTSAVTTDMEERFCANVLAMGTSCITISHRPALVAFHDVVLSLDGEGG 654
Query: 653 WRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEV 712
W VH +R+ SS T+ G + +K+ ET RQSDA AV++AF N KAQS +SEV
Sbjct: 655 WSVHHRREDSS--TELGNDTVKALETKRQSDAKAVQRAFAM--------NKKAQSDISEV 704
Query: 713 -IAASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSR 771
IA+SP N+ PQL R LP+RVA M KVLVPT+FDKQGA+LLAVAFLVVSR
Sbjct: 705 IIASSPSMKRNISPSAVPQLHGNTRALPMRVAAMCKVLVPTIFDKQGARLLAVAFLVVSR 764
Query: 772 TWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRI 831
TW+SDRIASLNGTTVK VLEQDKASF+RLIG+SV+QSAASSFIAPSIRHLTARLALG RI
Sbjct: 765 TWVSDRIASLNGTTVKLVLEQDKASFIRLIGISVIQSAASSFIAPSIRHLTARLALGGRI 824
Query: 832 RMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILW 891
R+TQHLLK+YLR N+FYKVF+M+SK++DADQRITHDLEKLTTDLSGLVTGMVKPSVDILW
Sbjct: 825 RLTQHLLKNYLRNNAFYKVFHMASKNVDADQRITHDLEKLTTDLSGLVTGMVKPSVDILW 884
Query: 892 FTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHA 951
FTWRMK LTG+RGVAILYAYMLLGLGFLR+VTP+FGDL S+EQQLEGTFRFMHERL HA
Sbjct: 885 FTWRMKLLTGRRGVAILYAYMLLGLGFLRTVTPDFGDLISQEQQLEGTFRFMHERLCTHA 944
Query: 952 ESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLY 1011
ESVAFFGGGAREKAM+ESRFRELL HS LLKKKWLFGILDDF+TKQLPHNVTWGLSL+Y
Sbjct: 945 ESVAFFGGGAREKAMVESRFRELLLHSKYLLKKKWLFGILDDFITKQLPHNVTWGLSLIY 1004
Query: 1012 AMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEE 1071
AMEHKGDRA V+TQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEE
Sbjct: 1005 AMEHKGDRASVTTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEE 1064
Query: 1072 LLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLV 1131
LLDAAQ D S D ISFSK+DI+TPSQK+LAR+L F+I G SLLV
Sbjct: 1065 LLDAAQSVRDVHS------------SDVISFSKVDIVTPSQKMLARELIFDIKHGGSLLV 1112
Query: 1132 TGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQ 1191
TGPNGSGKSS+FRVLRGLWP+ SG L++PS+ +DEE GSGCGIFYVPQRPYTCLGTLRDQ
Sbjct: 1113 TGPNGSGKSSIFRVLRGLWPIASGRLSRPSEVVDEEDGSGCGIFYVPQRPYTCLGTLRDQ 1172
Query: 1192 IIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN 1251
IIYPLS EEAE++ LK++GK EK DT N+LD+ LK ILE VRL+YLLERE WDANL
Sbjct: 1173 IIYPLSCEEAEVKVLKMYGKDEKHADTRNLLDTRLKAILESVRLNYLLEREGSNWDANLK 1232
Query: 1252 WEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPK 1311
WEDILSLGEQQRLGM ARLFFHKPK
Sbjct: 1233 WEDILSLGEQQRLGM------------------------------------ARLFFHKPK 1256
Query: 1312 FGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRT 1371
FGILDECTNATSVDVEE LY LAKDMGIT VTSSQRPALIPFHS+ELRLIDGEGNW+LR
Sbjct: 1257 FGILDECTNATSVDVEEHLYGLAKDMGITVVTSSQRPALIPFHSMELRLIDGEGNWKLRL 1316
Query: 1372 I 1372
I
Sbjct: 1317 I 1317
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463371|ref|XP_003601967.1| ABC transporter D family member [Medicago truncatula] gi|355491015|gb|AES72218.1| ABC transporter D family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2180 bits (5650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1082/1389 (77%), Positives = 1199/1389 (86%), Gaps = 59/1389 (4%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L T HG+ L+SRRK ILLASGIL+AGGTAAY++SRF K D FGH N +
Sbjct: 1 MPSLQLLKFTRHGQNFLASRRKAILLASGILIAGGTAAYMQSRFRVNKHDLFGHCNEQNN 60
Query: 61 SERKPDKAVANRSNIKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTAL 120
+ + V N S K QKKGG+KSLQVL AILLS+MG++G ++LLALV VVLRTAL
Sbjct: 61 DKEVKKEEVINDSTKPKNKQKKGGMKSLQVLTAILLSDMGQLGVKNLLALVVTVVLRTAL 120
Query: 121 SNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180
SNRLAKVQGFLFRAAFLRR PLFF+LISENI+LCFLLST+HSTSKYITGTLSL FRK++T
Sbjct: 121 SNRLAKVQGFLFRAAFLRRAPLFFRLISENIILCFLLSTIHSTSKYITGTLSLHFRKVLT 180
Query: 181 KLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240
KLIH+ YFENM YYKISHVDGRIT+PEQR+ASDVP+FCSELSE+VQDDL AVTDGLLYTW
Sbjct: 181 KLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPKFCSELSEIVQDDLAAVTDGLLYTW 240
Query: 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESI 300
RLCSYASPKYVFWILAYVLGAG +RNFSP FGKLMS EQQLEG+YRQLHSRLRTH+ESI
Sbjct: 241 RLCSYASPKYVFWILAYVLGAGAAIRNFSPPFGKLMSTEQQLEGDYRQLHSRLRTHSESI 300
Query: 301 AFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFA 360
AFYGGE +EE+HIQ KFK L RHMR VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF+
Sbjct: 301 AFYGGERREEAHIQHKFKTLVRHMRRVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFS 360
Query: 361 GNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVIS 420
GNL+PD+STLGRA+MLSNLRYHTSVIISLFQSLGTLSI +RRLNRLSGYADRI+ELM +S
Sbjct: 361 GNLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSIGARRLNRLSGYADRIYELMAVS 420
Query: 421 RELSIEDK--SPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITG 478
RELS+ D+ S QR GSRN SEANYIEFS VKVVTPTGNVLV++L+L+VE GSNLLITG
Sbjct: 421 RELSLVDEKSSLQRQGSRNCISEANYIEFSNVKVVTPTGNVLVDDLSLRVEQGSNLLITG 480
Query: 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 538
PNGSGKSSLFRVLGGLWPL+SGHI KPG+GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT
Sbjct: 481 PNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 540
Query: 539 SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598
S+QEVEPLT GMVELLKNVDLEYLLDRY PEKE+NWGDELSLGEQQRLGMARLFYHKPK
Sbjct: 541 SNQEVEPLTDHGMVELLKNVDLEYLLDRYLPEKEVNWGDELSLGEQQRLGMARLFYHKPK 600
Query: 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDK 658
FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W VH +
Sbjct: 601 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYR 660
Query: 659 RDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPI 718
R+ SS T+ GI+ +K+SET RQ+DA AV++AF +KKDSAFS+ KA+SY+++VI +SP
Sbjct: 661 REDSS--TEMGIDTMKASETKRQTDAKAVQRAFAMSKKDSAFSSSKAESYIADVIYSSPS 718
Query: 719 ADH-NVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDR 777
+H N+P V PQL RILPLRVA MFKVLVPTVFDKQGAQLLAVA LVVSRTW+SDR
Sbjct: 719 TNHTNLPSTV-PQLHGNTRILPLRVAAMFKVLVPTVFDKQGAQLLAVALLVVSRTWVSDR 777
Query: 778 IASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837
IASLNGTTVK+VLEQDKA+F+RLIG+SVLQSAASSFIAPSIRHLTARLALGWRIR+TQHL
Sbjct: 778 IASLNGTTVKFVLEQDKAAFIRLIGISVLQSAASSFIAPSIRHLTARLALGWRIRLTQHL 837
Query: 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 897
LK+YLR N FYKVF+M+SKS+DADQRIT DLEKLTTDLSGLVTG+VKPSVDILWFTWRMK
Sbjct: 838 LKNYLRSNVFYKVFHMASKSVDADQRITQDLEKLTTDLSGLVTGLVKPSVDILWFTWRMK 897
Query: 898 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFF 957
LTGQRGVAILYAYMLLGLGFLR+VTP+FGDL S+EQQLEG FRFMHERL HAESVAFF
Sbjct: 898 LLTGQRGVAILYAYMLLGLGFLRTVTPDFGDLISQEQQLEGIFRFMHERLCTHAESVAFF 957
Query: 958 GGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG 1017
GGGAREKAM+ESRF +LL HS LLKKK LFGILDDF+TKQLPHNVTW LSLLYAMEHKG
Sbjct: 958 GGGAREKAMVESRFSDLLIHSQYLLKKKCLFGILDDFITKQLPHNVTWLLSLLYAMEHKG 1017
Query: 1018 DRALVST------------QGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINR 1065
DRA++ST GELAHALRFLASVVSQSFLAFGDILEL+RK VELSGG+NR
Sbjct: 1018 DRAVISTLGRIVGLFSHYITGELAHALRFLASVVSQSFLAFGDILELNRKLVELSGGVNR 1077
Query: 1066 IFELEELLDAAQPGDDEISGSSQHKWNSTDY--QDSISFSKLDIITPSQKLLARQLTFEI 1123
IFELEELLDAA G+ G ++TDY +D ISFSK++I+TPSQK+LAR+LT ++
Sbjct: 1078 IFELEELLDAAHSGEFINGGPIS---SATDYHSKDVISFSKVNIVTPSQKMLARELTCDV 1134
Query: 1124 VPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYT 1183
G+SLLVTGPNGSGKSS+FRVLRGLWP+ SG ++PS+ +D++ GSGC IFYVPQRPYT
Sbjct: 1135 ELGRSLLVTGPNGSGKSSIFRVLRGLWPIASGRFSRPSEDLDQDVGSGCSIFYVPQRPYT 1194
Query: 1184 CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREE 1243
CLGTLRDQIIYPLSREEAELRALK++GKGEK DT +LD +L+ ILE VRL+YLLER+
Sbjct: 1195 CLGTLRDQIIYPLSREEAELRALKMYGKGEKHPDTVKLLDKHLEVILENVRLNYLLERDT 1254
Query: 1244 VGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKA 1303
GWDANLNWED LSLGEQQRLGM A
Sbjct: 1255 SGWDANLNWEDTLSLGEQQRLGM------------------------------------A 1278
Query: 1304 RLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDG 1363
RLFFHKPKFGILDECTNATSVDVEE LY LAK M ITF+TSSQRPALIP+HS+ELRLIDG
Sbjct: 1279 RLFFHKPKFGILDECTNATSVDVEEHLYGLAKKMEITFITSSQRPALIPYHSMELRLIDG 1338
Query: 1364 EGNWELRTI 1372
EGNW+LR+I
Sbjct: 1339 EGNWQLRSI 1347
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463369|ref|XP_003601966.1| ABC transporter D family member [Medicago truncatula] gi|355491014|gb|AES72217.1| ABC transporter D family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2172 bits (5628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1082/1396 (77%), Positives = 1199/1396 (85%), Gaps = 66/1396 (4%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L T HG+ L+SRRK ILLASGIL+AGGTAAY++SRF K D FGH N +
Sbjct: 1 MPSLQLLKFTRHGQNFLASRRKAILLASGILIAGGTAAYMQSRFRVNKHDLFGHCNEQNN 60
Query: 61 SERKPDKAVANRSNIKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTAL 120
+ + V N S K QKKGG+KSLQVL AILLS+MG++G ++LLALV VVLRTAL
Sbjct: 61 DKEVKKEEVINDSTKPKNKQKKGGMKSLQVLTAILLSDMGQLGVKNLLALVVTVVLRTAL 120
Query: 121 SNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180
SNRLAKVQGFLFRAAFLRR PLFF+LISENI+LCFLLST+HSTSKYITGTLSL FRK++T
Sbjct: 121 SNRLAKVQGFLFRAAFLRRAPLFFRLISENIILCFLLSTIHSTSKYITGTLSLHFRKVLT 180
Query: 181 KLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240
KLIH+ YFENM YYKISHVDGRIT+PEQR+ASDVP+FCSELSE+VQDDL AVTDGLLYTW
Sbjct: 181 KLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPKFCSELSEIVQDDLAAVTDGLLYTW 240
Query: 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESI 300
RLCSYASPKYVFWILAYVLGAG +RNFSP FGKLMS EQQLEG+YRQLHSRLRTH+ESI
Sbjct: 241 RLCSYASPKYVFWILAYVLGAGAAIRNFSPPFGKLMSTEQQLEGDYRQLHSRLRTHSESI 300
Query: 301 AFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFA 360
AFYGGE +EE+HIQ KFK L RHMR VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF+
Sbjct: 301 AFYGGERREEAHIQHKFKTLVRHMRRVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFS 360
Query: 361 GNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVIS 420
GNL+PD+STLGRA+MLSNLRYHTSVIISLFQSLGTLSI +RRLNRLSGYADRI+ELM +S
Sbjct: 361 GNLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSIGARRLNRLSGYADRIYELMAVS 420
Query: 421 RELSIEDK--SPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITG 478
RELS+ D+ S QR GSRN SEANYIEFS VKVVTPTGNVLV++L+L+VE GSNLLITG
Sbjct: 421 RELSLVDEKSSLQRQGSRNCISEANYIEFSNVKVVTPTGNVLVDDLSLRVEQGSNLLITG 480
Query: 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 538
PNGSGKSSLFRVLGGLWPL+SGHI KPG+GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT
Sbjct: 481 PNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 540
Query: 539 SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598
S+QEVEPLT GMVELLKNVDLEYLLDRY PEKE+NWGDELSLGEQQRLGMARLFYHKPK
Sbjct: 541 SNQEVEPLTDHGMVELLKNVDLEYLLDRYLPEKEVNWGDELSLGEQQRLGMARLFYHKPK 600
Query: 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDK 658
FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W VH +
Sbjct: 601 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYR 660
Query: 659 RDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKK-------DSAFSNPKAQSYVSE 711
R+ SS T+ GI+ +K+SET RQ+DA AV++AF +KK DSAFS+ KA+SY+++
Sbjct: 661 REDSS--TEMGIDTMKASETKRQTDAKAVQRAFAMSKKIFIPFLQDSAFSSSKAESYIAD 718
Query: 712 VIAASPIADH-NVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVS 770
VI +SP +H N+P V PQL RILPLRVA MFKVLVPTVFDKQGAQLLAVA LVVS
Sbjct: 719 VIYSSPSTNHTNLPSTV-PQLHGNTRILPLRVAAMFKVLVPTVFDKQGAQLLAVALLVVS 777
Query: 771 RTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWR 830
RTW+SDRIASLNGTTVK+VLEQDKA+F+RLIG+SVLQSAASSFIAPSIRHLTARLALGWR
Sbjct: 778 RTWVSDRIASLNGTTVKFVLEQDKAAFIRLIGISVLQSAASSFIAPSIRHLTARLALGWR 837
Query: 831 IRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDIL 890
IR+TQHLLK+YLR N FYKVF+M+SKS+DADQRIT DLEKLTTDLSGLVTG+VKPSVDIL
Sbjct: 838 IRLTQHLLKNYLRSNVFYKVFHMASKSVDADQRITQDLEKLTTDLSGLVTGLVKPSVDIL 897
Query: 891 WFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAH 950
WFTWRMK LTGQRGVAILYAYMLLGLGFLR+VTP+FGDL S+EQQLEG FRFMHERL H
Sbjct: 898 WFTWRMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGDLISQEQQLEGIFRFMHERLCTH 957
Query: 951 AESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLL 1010
AESVAFFGGGAREKAM+ESRF +LL HS LLKKK LFGILDDF+TKQLPHNVTW LSLL
Sbjct: 958 AESVAFFGGGAREKAMVESRFSDLLIHSQYLLKKKCLFGILDDFITKQLPHNVTWLLSLL 1017
Query: 1011 YAMEHKGDRALVST------------QGELAHALRFLASVVSQSFLAFGDILELHRKFVE 1058
YAMEHKGDRA++ST GELAHALRFLASVVSQSFLAFGDILEL+RK VE
Sbjct: 1018 YAMEHKGDRAVISTLGRIVGLFSHYITGELAHALRFLASVVSQSFLAFGDILELNRKLVE 1077
Query: 1059 LSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDY--QDSISFSKLDIITPSQKLLA 1116
LSGG+NRIFELEELLDAA G+ G ++TDY +D ISFSK++I+TPSQK+LA
Sbjct: 1078 LSGGVNRIFELEELLDAAHSGEFINGGPIS---SATDYHSKDVISFSKVNIVTPSQKMLA 1134
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
R+LT ++ G+SLLVTGPNGSGKSS+FRVLRGLWP+ SG ++PS+ +D++ GSGC IFY
Sbjct: 1135 RELTCDVELGRSLLVTGPNGSGKSSIFRVLRGLWPIASGRFSRPSEDLDQDVGSGCSIFY 1194
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 1236
VPQRPYTCLGTLRDQIIYPLSREEAELRALK++GKGEK DT +LD +L+ ILE VRL+
Sbjct: 1195 VPQRPYTCLGTLRDQIIYPLSREEAELRALKMYGKGEKHPDTVKLLDKHLEVILENVRLN 1254
Query: 1237 YLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFF 1296
YLLER+ GWDANLNWED LSLGEQQRLGM
Sbjct: 1255 YLLERDTSGWDANLNWEDTLSLGEQQRLGM------------------------------ 1284
Query: 1297 PPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSL 1356
ARLFFHKPKFGILDECTNATSVDVEE LY LAK M ITF+TSSQRPALIP+HS+
Sbjct: 1285 ------ARLFFHKPKFGILDECTNATSVDVEEHLYGLAKKMEITFITSSQRPALIPYHSM 1338
Query: 1357 ELRLIDGEGNWELRTI 1372
ELRLIDGEGNW+LR+I
Sbjct: 1339 ELRLIDGEGNWQLRSI 1354
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18478510|dbj|BAB84550.1| peroxisomal ABC transporter [Arabidopsis thaliana] gi|18478515|dbj|BAB84551.1| peroxisomal ABC transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2161 bits (5600), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1064/1375 (77%), Positives = 1187/1375 (86%), Gaps = 46/1375 (3%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L LTE GRG+++SRRK+ILLA+GI+ AGGTA YLKSR +S++PD+ NG D
Sbjct: 1 MPSLQLLQLTERGRGLVASRRKSILLAAGIVAAGGTAVYLKSRVASRRPDSSRLCNGQSD 60
Query: 61 SERKPDKAVANRSN--IKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRT 118
+ +K A N I +K GGLKSLQVL AILLS+MGKMGARDLLALV VV RT
Sbjct: 61 DDEALEKLTATDQNAKITTKKKKGGGLKSLQVLTAILLSQMGKMGARDLLALVATVVFRT 120
Query: 119 ALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKI 178
ALSNRLAKVQGFLFRAAFLRR PLF +LISENI+LCF+LST+HSTSKYITG LSL+FRKI
Sbjct: 121 ALSNRLAKVQGFLFRAAFLRRAPLFLRLISENIMLCFMLSTLHSTSKYITGALSLRFRKI 180
Query: 179 VTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLY 238
+TK+IH+ YFENM YYKISHVDGRITHPEQR+ASDVPRF SELS+L+ DDLTAVTDG+LY
Sbjct: 181 LTKIIHSHYFENMVYYKISHVDGRITHPEQRIASDVPRFSSELSDLILDDLTAVTDGILY 240
Query: 239 TWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAE 298
WRLCSYASPKY+FWILAYVLGAGT +RNFSP+FGKLMSKEQQLEGEYRQLHSRLRTH+E
Sbjct: 241 AWRLCSYASPKYIFWILAYVLGAGTAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSE 300
Query: 299 SIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 358
SIAFYGGE +EESHIQQKFK L HM VLHDHWWFGMIQDFLLKYLGATVAVILIIEPF
Sbjct: 301 SIAFYGGETREESHIQQKFKNLVSHMSHVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 360
Query: 359 FAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMV 418
F+G+L+PD STLGRA+MLSN+RYHTSVIISLFQ+LGTLSISSRRLNRLSGYADRIHELM
Sbjct: 361 FSGHLRPDDSTLGRAEMLSNIRYHTSVIISLFQALGTLSISSRRLNRLSGYADRIHELMA 420
Query: 419 ISRELSIEDKSP-QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 477
+SRELS +DKS QRN SRNY SEANY+EFS VKVVTPTGNVLVE+LTL+VE GSNLLIT
Sbjct: 421 VSRELSGDDKSSFQRNRSRNYLSEANYVEFSDVKVVTPTGNVLVEDLTLRVEQGSNLLIT 480
Query: 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPL 537
GPNGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPY AVGTLRDQLIYPL
Sbjct: 481 GPNGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYMAVGTLRDQLIYPL 540
Query: 538 TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597
TS QE E LT GMVELLKNVDLEYLLDRY PEKE+NWGDELSLGEQQRLGMARLFYHKP
Sbjct: 541 TSGQESELLTEIGMVELLKNVDLEYLLDRYQPEKEVNWGDELSLGEQQRLGMARLFYHKP 600
Query: 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHD 657
KFAILDECTSAVTTDMEERF AKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W VH
Sbjct: 601 KFAILDECTSAVTTDMEERFAAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHY 660
Query: 658 KRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASP 717
KRD S+++T + I+ +KSS+TDRQ+DAM V++AF A+K+SA +N KAQSY +++IA SP
Sbjct: 661 KRDDSALLTDAEIDSVKSSDTDRQNDAMVVQRAFAAARKESA-TNSKAQSYQTQLIARSP 719
Query: 718 IADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDR 777
+ D +V LP FPQ +++ R LP RVA M VL+PT+FDKQGAQLLAVA LVVSRT ISDR
Sbjct: 720 VVDKSVVLPRFPQPQTSQRALPSRVAAMLNVLIPTIFDKQGAQLLAVACLVVSRTLISDR 779
Query: 778 IASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837
IASLNGTTVKYVLEQDKA+FVRLIG+SVLQS ASS IAPS+RHLT RLALGWRIR+TQHL
Sbjct: 780 IASLNGTTVKYVLEQDKAAFVRLIGLSVLQSGASSIIAPSLRHLTQRLALGWRIRLTQHL 839
Query: 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 897
L++YLR N+FYKVF+MS SIDADQR+T DLEKLT DLSGL+TGMVKPSVDILWFTWRMK
Sbjct: 840 LRNYLRNNAFYKVFHMSGNSIDADQRLTRDLEKLTADLSGLLTGMVKPSVDILWFTWRMK 899
Query: 898 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFF 957
LTGQRGVAILY YMLLGLGFLR V P+FGDL EQQLEG FRFMHERL HAES+AFF
Sbjct: 900 LLTGQRGVAILYTYMLLGLGFLRRVAPDFGDLAGEEQQLEGKFRFMHERLNTHAESIAFF 959
Query: 958 GGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG 1017
GGGAREKAM++ +FR LL+HSL+LL+KKWL+GILDDFVTKQLP+NVTWGLSLLYA+EHKG
Sbjct: 960 GGGAREKAMVDKKFRALLDHSLMLLRKKWLYGILDDFVTKQLPNNVTWGLSLLYALEHKG 1019
Query: 1018 DRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQ 1077
DRALVSTQGELAHALR+LASVVSQSF+AFGDILELH+KF+ELSGGINRIFEL+E LDA+Q
Sbjct: 1020 DRALVSTQGELAHALRYLASVVSQSFMAFGDILELHKKFLELSGGINRIFELDEFLDASQ 1079
Query: 1078 PGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGS 1137
G +S+++ + D QD +SFS++DIITP+QKL+A +L+ EIV GKSLLVTGPNGS
Sbjct: 1080 SG-----VTSENQTSRLDSQDLLSFSEVDIITPAQKLMASKLSCEIVSGKSLLVTGPNGS 1134
Query: 1138 GKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLS 1197
GK+SVFRVLR +WP V G LTKPS I +E GSG G+F+VPQRPYTCLGTLRDQIIYPLS
Sbjct: 1135 GKTSVFRVLRDIWPTVCGRLTKPSLDI-KELGSGNGMFFVPQRPYTCLGTLRDQIIYPLS 1193
Query: 1198 REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257
+EEAE RA KL+ GE + +ILDS+LKTILE VRL YLLER+ GWDA NWEDILS
Sbjct: 1194 KEEAEKRAAKLYTSGESSTEAGSILDSHLKTILENVRLVYLLERDVGGWDATTNWEDILS 1253
Query: 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDE 1317
LGEQQRLGM ARLFFH+PKFG+LDE
Sbjct: 1254 LGEQQRLGM------------------------------------ARLFFHRPKFGVLDE 1277
Query: 1318 CTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1372
CTNATSVDVEEQLYR+A+DMG+TF+TSSQRPALIPFHSLELRLIDGEGNWELR+I
Sbjct: 1278 CTNATSVDVEEQLYRVARDMGVTFITSSQRPALIPFHSLELRLIDGEGNWELRSI 1332
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18420546|ref|NP_568072.1| ABC transporter D family member 1 [Arabidopsis thaliana] gi|75332181|sp|Q94FB9.1|AB1D_ARATH RecName: Full=ABC transporter D family member 1; Short=ABC transporter ABCD.1; Short=AtABCD1; AltName: Full=Peroxisomal ABC transporter 1; Short=AtPXA1; AltName: Full=Protein ACETATE NON-UTILIZING 2; AltName: Full=Protein COMATOSE; AltName: Full=Protein PEROXISOME DEFECTIVE 3; Short=Ped3p gi|15320529|gb|AAK95343.1|AF378120_1 peroxisomal ABC transporter PXA1 [Arabidopsis thaliana] gi|20803766|emb|CAC85290.1| ABC transporter [Arabidopsis thaliana] gi|332661726|gb|AEE87126.1| ABC transporter D family member 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2161 bits (5600), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1064/1375 (77%), Positives = 1187/1375 (86%), Gaps = 46/1375 (3%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L LTE GRG+++SRRK+ILLA+GI+ AGGTA YLKSR +S++PD+ NG D
Sbjct: 1 MPSLQLLQLTERGRGLVASRRKSILLAAGIVAAGGTAVYLKSRVASRRPDSSRLCNGQSD 60
Query: 61 SERKPDKAVANRSN--IKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRT 118
+ +K A N I +K GGLKSLQVL AILLS+MGKMGARDLLALV VV RT
Sbjct: 61 DDETLEKLTATDQNAKITTKKKKGGGLKSLQVLTAILLSQMGKMGARDLLALVATVVFRT 120
Query: 119 ALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKI 178
ALSNRLAKVQGFLFRAAFLRR PLF +LISENI+LCF+LST+HSTSKYITG LSL+FRKI
Sbjct: 121 ALSNRLAKVQGFLFRAAFLRRAPLFLRLISENIMLCFMLSTLHSTSKYITGALSLRFRKI 180
Query: 179 VTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLY 238
+TK+IH+ YFENM YYKISHVDGRITHPEQR+ASDVPRF SELS+L+ DDLTAVTDG+LY
Sbjct: 181 LTKIIHSHYFENMVYYKISHVDGRITHPEQRIASDVPRFSSELSDLILDDLTAVTDGILY 240
Query: 239 TWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAE 298
WRLCSYASPKY+FWILAYVLGAGT +RNFSP+FGKLMSKEQQLEGEYRQLHSRLRTH+E
Sbjct: 241 AWRLCSYASPKYIFWILAYVLGAGTAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSE 300
Query: 299 SIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 358
SIAFYGGE +EESHIQQKFK L HM VLHDHWWFGMIQDFLLKYLGATVAVILIIEPF
Sbjct: 301 SIAFYGGETREESHIQQKFKNLVSHMSHVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 360
Query: 359 FAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMV 418
F+G+L+PD STLGRA+MLSN+RYHTSVIISLFQ+LGTLSISSRRLNRLSGYADRIHELM
Sbjct: 361 FSGHLRPDDSTLGRAEMLSNIRYHTSVIISLFQALGTLSISSRRLNRLSGYADRIHELMA 420
Query: 419 ISRELSIEDKSP-QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 477
+SRELS +DKS QRN SRNY SEANY+EFS VKVVTPTGNVLVE+LTL+VE GSNLLIT
Sbjct: 421 VSRELSGDDKSSFQRNRSRNYLSEANYVEFSDVKVVTPTGNVLVEDLTLRVEQGSNLLIT 480
Query: 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPL 537
GPNGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPY AVGTLRDQLIYPL
Sbjct: 481 GPNGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYMAVGTLRDQLIYPL 540
Query: 538 TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597
TS QE E LT GMVELLKNVDLEYLLDRY PEKE+NWGDELSLGEQQRLGMARLFYHKP
Sbjct: 541 TSGQESELLTEIGMVELLKNVDLEYLLDRYQPEKEVNWGDELSLGEQQRLGMARLFYHKP 600
Query: 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHD 657
KFAILDECTSAVTTDMEERF AKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W VH
Sbjct: 601 KFAILDECTSAVTTDMEERFAAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHY 660
Query: 658 KRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASP 717
KRD S+++T + I+ +KSS+TDRQ+DAM V++AF A+K+SA +N KAQSY +++IA SP
Sbjct: 661 KRDDSALLTDAEIDSVKSSDTDRQNDAMVVQRAFAAARKESA-TNSKAQSYQTQLIARSP 719
Query: 718 IADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDR 777
+ D +V LP FPQ +++ R LP RVA M VL+PT+FDKQGAQLLAVA LVVSRT ISDR
Sbjct: 720 VVDKSVVLPRFPQPQTSQRALPSRVAAMLNVLIPTIFDKQGAQLLAVACLVVSRTLISDR 779
Query: 778 IASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837
IASLNGTTVKYVLEQDKA+FVRLIG+SVLQS ASS IAPS+RHLT RLALGWRIR+TQHL
Sbjct: 780 IASLNGTTVKYVLEQDKAAFVRLIGLSVLQSGASSIIAPSLRHLTQRLALGWRIRLTQHL 839
Query: 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 897
L++YLR N+FYKVF+MS SIDADQR+T DLEKLT DLSGL+TGMVKPSVDILWFTWRMK
Sbjct: 840 LRNYLRNNAFYKVFHMSGNSIDADQRLTRDLEKLTADLSGLLTGMVKPSVDILWFTWRMK 899
Query: 898 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFF 957
LTGQRGVAILY YMLLGLGFLR V P+FGDL EQQLEG FRFMHERL HAES+AFF
Sbjct: 900 LLTGQRGVAILYTYMLLGLGFLRRVAPDFGDLAGEEQQLEGKFRFMHERLNTHAESIAFF 959
Query: 958 GGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG 1017
GGGAREKAM++ +FR LL+HSL+LL+KKWL+GILDDFVTKQLP+NVTWGLSLLYA+EHKG
Sbjct: 960 GGGAREKAMVDKKFRALLDHSLMLLRKKWLYGILDDFVTKQLPNNVTWGLSLLYALEHKG 1019
Query: 1018 DRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQ 1077
DRALVSTQGELAHALR+LASVVSQSF+AFGDILELH+KF+ELSGGINRIFEL+E LDA+Q
Sbjct: 1020 DRALVSTQGELAHALRYLASVVSQSFMAFGDILELHKKFLELSGGINRIFELDEFLDASQ 1079
Query: 1078 PGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGS 1137
G +S+++ + D QD +SFS++DIITP+QKL+A +L+ EIV GKSLLVTGPNGS
Sbjct: 1080 SG-----VTSENQTSRLDSQDLLSFSEVDIITPAQKLMASKLSCEIVSGKSLLVTGPNGS 1134
Query: 1138 GKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLS 1197
GK+SVFRVLR +WP V G LTKPS I +E GSG G+F+VPQRPYTCLGTLRDQIIYPLS
Sbjct: 1135 GKTSVFRVLRDIWPTVCGRLTKPSLDI-KELGSGNGMFFVPQRPYTCLGTLRDQIIYPLS 1193
Query: 1198 REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257
+EEAE RA KL+ GE + +ILDS+LKTILE VRL YLLER+ GWDA NWEDILS
Sbjct: 1194 KEEAEKRAAKLYTSGESSTEAGSILDSHLKTILENVRLVYLLERDVGGWDATTNWEDILS 1253
Query: 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDE 1317
LGEQQRLGM ARLFFH+PKFG+LDE
Sbjct: 1254 LGEQQRLGM------------------------------------ARLFFHRPKFGVLDE 1277
Query: 1318 CTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1372
CTNATSVDVEEQLYR+A+DMG+TF+TSSQRPALIPFHSLELRLIDGEGNWELR+I
Sbjct: 1278 CTNATSVDVEEQLYRVARDMGVTFITSSQRPALIPFHSLELRLIDGEGNWELRSI 1332
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549548|ref|XP_002515826.1| peroxisomal abc transporter, putative [Ricinus communis] gi|223545055|gb|EEF46568.1| peroxisomal abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2158 bits (5591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1084/1364 (79%), Positives = 1185/1364 (86%), Gaps = 51/1364 (3%)
Query: 21 RKTILLASGILVAGGTAA-YLKSRFSSKKPDAFGHYNGLGDSERKPDKAVANRSN-IKKA 78
RK++LLA+G+LVAGGTAA Y++SR ++ D+F YNG D D + + + +
Sbjct: 13 RKSLLLATGVLVAGGTAAAYVQSR---RRSDSFVQYNGRKDDIGNSDNNNNDNDDNVVRK 69
Query: 79 NQKK---------GGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQG 129
N+ K G LKSL +LAA+LLSEMGKMGARDL A+V I V RTALSNRLAKVQG
Sbjct: 70 NEDKVKKKSTQKKGTLKSLHLLAAVLLSEMGKMGARDLFAMVAIAVARTALSNRLAKVQG 129
Query: 130 FLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFE 189
FLFRAAFLRR PLFF+LISENILLCFL+STMHSTSKY+TGTLSL FRKI+TK IH YFE
Sbjct: 130 FLFRAAFLRRAPLFFRLISENILLCFLVSTMHSTSKYVTGTLSLCFRKILTKRIHAHYFE 189
Query: 190 NMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPK 249
NMAYYKISHVDGRIT+PEQR+ASDVPRFCSELSELVQDDLTAVTDG+LYTWRLCSY SPK
Sbjct: 190 NMAYYKISHVDGRITNPEQRIASDVPRFCSELSELVQDDLTAVTDGILYTWRLCSYTSPK 249
Query: 250 YVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKE 309
Y FWILAYVLGAGTM+R FSPAFGKLMSKEQQLEGEYR+LHSRLRTHAESIAFYGGE +E
Sbjct: 250 YFFWILAYVLGAGTMIRKFSPAFGKLMSKEQQLEGEYRRLHSRLRTHAESIAFYGGERRE 309
Query: 310 ESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTST 369
E HIQ+KFK L +HMRVVLH+HWWFGMIQDFL+KYLGATVAVILIIEPFFAG+L+PD ST
Sbjct: 310 EFHIQEKFKNLVKHMRVVLHEHWWFGMIQDFLVKYLGATVAVILIIEPFFAGHLRPDAST 369
Query: 370 LGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDK- 428
LGRA MLSNLRYHTSVIISLFQSLGTLS SSRRLNRLSGYADRIHEL+ ISREL+ +DK
Sbjct: 370 LGRATMLSNLRYHTSVIISLFQSLGTLSTSSRRLNRLSGYADRIHELIAISRELNNDDKT 429
Query: 429 SPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLF 488
S QR+ SRNYFSE++Y+EFSGVKVVTPTGNVLVE+LTLKVE GSNLLITGPNGSGKSSLF
Sbjct: 430 SLQRSRSRNYFSESDYVEFSGVKVVTPTGNVLVEDLTLKVESGSNLLITGPNGSGKSSLF 489
Query: 489 RVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH 548
RVLGGLWPLVSG+I KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT DQEVEPLT
Sbjct: 490 RVLGGLWPLVSGYIVKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTVDQEVEPLTR 549
Query: 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
GM+ELLKNVDLEYLLDRYPPE+E+NWG+ELSLGEQQRLGMARLFYHKPKFAILDECTSA
Sbjct: 550 SGMLELLKNVDLEYLLDRYPPEQEVNWGEELSLGEQQRLGMARLFYHKPKFAILDECTSA 609
Query: 609 VTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKS 668
VTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W+V KR + +T++
Sbjct: 610 VTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWKVSYKRKDTPALTEA 669
Query: 669 GINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVF 728
G N+++ S+TDRQSDAM V++AF T DSAFS+ KAQSY+SEVIAASP AD LP
Sbjct: 670 GTNVVRISDTDRQSDAMVVQRAFATIDTDSAFSSSKAQSYISEVIAASPSADSRHQLPTV 729
Query: 729 PQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY 788
PQL+ AP+ L LRVA M K+LVPT+ D+QGAQLLAVAFLVVSRTW+SDRIASLNGTTVKY
Sbjct: 730 PQLQRAPKALALRVAAMSKILVPTLLDRQGAQLLAVAFLVVSRTWVSDRIASLNGTTVKY 789
Query: 789 VLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFY 848
VLEQDK+SF+RLIG+S+LQSAASSFIAPS+RHLTARLALGWRIR+T HLL++YLR N+FY
Sbjct: 790 VLEQDKSSFIRLIGISILQSAASSFIAPSLRHLTARLALGWRIRLTGHLLQNYLRNNAFY 849
Query: 849 KVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAIL 908
KVF MSSK+IDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK LTGQRGVAIL
Sbjct: 850 KVFYMSSKNIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKLLTGQRGVAIL 909
Query: 909 YAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIE 968
YAYMLLGLGFLR+VTP+FGDL SR QQLEG FRFMHERLR HAESVAFFGGGAREK+MIE
Sbjct: 910 YAYMLLGLGFLRTVTPDFGDLASRAQQLEGMFRFMHERLRTHAESVAFFGGGAREKSMIE 969
Query: 969 SRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGEL 1028
+RFRELL+HSLLLLKKKWL+GILDDFVTKQLPHNVTWGLSLLYA+EHKGDRALVSTQGEL
Sbjct: 970 ARFRELLDHSLLLLKKKWLYGILDDFVTKQLPHNVTWGLSLLYAVEHKGDRALVSTQGEL 1029
Query: 1029 AHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQ 1088
AHALRFLASVVSQSFLAFGDILELH+KF+ELSG INRIFEL+ELLDAAQ GD S
Sbjct: 1030 AHALRFLASVVSQSFLAFGDILELHKKFLELSGSINRIFELDELLDAAQSGDWSTDKLSP 1089
Query: 1089 HKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRG 1148
K + +D+I F ++DIITP+QKLLAR+LT +IV GKSLLVTGPNGSGKSSVFRVLRG
Sbjct: 1090 RKESDLHVKDAICFEEVDIITPAQKLLARRLTCDIVQGKSLLVTGPNGSGKSSVFRVLRG 1149
Query: 1149 LWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKL 1208
LWP+VSG LTKPSQHI +E GCGIFYVPQRPYTCLGTLRDQIIYPLS +EAE LKL
Sbjct: 1150 LWPLVSGRLTKPSQHIGKETEYGCGIFYVPQRPYTCLGTLRDQIIYPLSHDEAEHMTLKL 1209
Query: 1209 HGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVS 1268
G +K T + LD LKTILE VRL+YLLEREE GWDANLNWEDILSLGEQQRLGM
Sbjct: 1210 SGVDKKSAHTRSFLDERLKTILENVRLNYLLEREEGGWDANLNWEDILSLGEQQRLGM-- 1267
Query: 1269 HLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEE 1328
ARLFFHKP+FGILDECTNATSVDVEE
Sbjct: 1268 ----------------------------------ARLFFHKPEFGILDECTNATSVDVEE 1293
Query: 1329 QLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1372
QLYRLAKDM IT VTSSQRPALIPFHS+ELR IDGEGNWELRTI
Sbjct: 1294 QLYRLAKDMDITVVTSSQRPALIPFHSVELRFIDGEGNWELRTI 1337
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1374 | ||||||
| RGD|2007 | 659 | Abcd3 "ATP-binding cassette, s | 0.414 | 0.863 | 0.337 | 8e-99 | |
| MGI|MGI:1349216 | 659 | Abcd3 "ATP-binding cassette, s | 0.414 | 0.863 | 0.335 | 4.8e-98 | |
| ZFIN|ZDB-GENE-040426-2868 | 656 | abcd3a "ATP-binding cassette, | 0.421 | 0.882 | 0.336 | 7.9e-97 | |
| ZFIN|ZDB-GENE-050517-29 | 659 | abcd3b "ATP-binding cassette, | 0.444 | 0.927 | 0.333 | 1.3e-96 | |
| ASPGD|ASPL0000056142 | 706 | AN1014 [Emericella nidulans (t | 0.406 | 0.791 | 0.33 | 4.1e-89 | |
| UNIPROTKB|Q5F4B9 | 660 | ABCD3 "Uncharacterized protein | 0.392 | 0.816 | 0.354 | 1.5e-82 | |
| UNIPROTKB|A7Z038 | 656 | ABCD3 "Uncharacterized protein | 0.392 | 0.821 | 0.342 | 6.9e-82 | |
| ZFIN|ZDB-GENE-050517-27 | 766 | abcd1 "ATP-binding cassette, s | 0.156 | 0.280 | 0.484 | 7.8e-82 | |
| WB|WBGene00004058 | 665 | pmp-1 [Caenorhabditis elegans | 0.397 | 0.821 | 0.329 | 1.1e-81 | |
| WB|WBGene00004061 | 734 | pmp-4 [Caenorhabditis elegans | 0.153 | 0.287 | 0.490 | 2.3e-81 |
| RGD|2007 Abcd3 "ATP-binding cassette, subfamily D (ALD), member 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 8.0e-99, Sum P(2) = 8.0e-99
Identities = 204/605 (33%), Positives = 321/605 (53%)
Query: 79 NQKKGGLKSLQVLAAILLSEMGK----MGARDLLALVG-IVVLRTALSNR----LAKVQ- 128
N +K G K V+ + LS + + M R G ++++ L +R + +Q
Sbjct: 47 NNEKEGKKERAVVDKVFLSRLSQILKIMVPRTFCKETGYLILIAVMLVSRTYCDVWMIQN 106
Query: 129 GFLFRAAFLRRVPLFFQLISENILLCF-LLSTMHSTSKYITGTLSLQFRKIVTKLIHTRY 187
G L + + R F+ N + L+S +++ KY L L FR +T+ ++ Y
Sbjct: 107 GTLIESGIIGRSSKDFKRYLFNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTRYLYEEY 166
Query: 188 FENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYAS 247
+ YYK+ ++D RI +P+Q L DV +FC+ + +L + D +LY ++L S
Sbjct: 167 LQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIG 226
Query: 248 PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN 307
+ ++AY+L +G + GK+ EQ+ EGEYR ++SRL T++E IAFY G
Sbjct: 227 AQGPASMMAYLLVSGLFLTRLRRPIGKMTIMEQKYEGEYRFVNSRLITNSEEIAFYNGNK 286
Query: 308 KEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDT 367
+E+ I F+ L H+ + + G I + KY+ V +++ PF P
Sbjct: 287 REKQTIHSVFRKLVEHLHNFIFFRFSMGFIDSIIAKYIATVVGYLVVSRPFL-DLAHPRH 345
Query: 368 STLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXXXXXXGYADRIHELMVISREL---- 423
+++L + +++ + Q+LG G+ RI ELM + ++L
Sbjct: 346 LHSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGK 405
Query: 424 ------SIEDK-------SPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEP 470
S +DK SP G+ + N I+F V + TP G++L+++L+ +V
Sbjct: 406 YERTMVSQQDKGIEGAQASPLIPGAGEIINADNIIKFDHVPLATPNGDILIQDLSFEVRS 465
Query: 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLR 530
G+N+LI GPNG GKSSLFRVLG LWPL GH+ KP G ++FYVPQRPY +GTLR
Sbjct: 466 GANVLICGPNGCGKSSLFRVLGELWPLFGGHLTKPERG-----KLFYVPQRPYMTLGTLR 520
Query: 531 DQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI-NWGDELSLGEQQRLG 588
DQ+IYP DQ+ + ++ + L NV L ++L+R + +W D LS GE+QR+
Sbjct: 521 DQVIYPDGKEDQKKKGISDQVLKGYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMA 580
Query: 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648
MARLFYHKP+FAILDECTSAV+ D+E+ + R +G + T+SHR +L H+ L +D
Sbjct: 581 MARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHMD 640
Query: 649 GEGEW 653
G G +
Sbjct: 641 GRGNY 645
|
|
| MGI|MGI:1349216 Abcd3 "ATP-binding cassette, sub-family D (ALD), member 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 827 (296.2 bits), Expect = 4.8e-98, Sum P(2) = 4.8e-98
Identities = 203/605 (33%), Positives = 320/605 (52%)
Query: 79 NQKKGGLKSLQVLAAILLSEMGK----MGARDLLALVG-IVVLRTALSNR----LAKVQ- 128
N +K G K V+ + LS + + M R G ++++ L +R + +Q
Sbjct: 47 NNEKEGKKERAVVDKVFLSRLSQILKIMVPRTFCKETGYLLLIAVMLVSRTYCDVWMIQN 106
Query: 129 GFLFRAAFLRRVPLFFQLISENILLCF-LLSTMHSTSKYITGTLSLQFRKIVTKLIHTRY 187
G L + + R F+ N + L+S +++ KY L L FR +T+ ++ Y
Sbjct: 107 GTLIESGIIGRSSKDFKRYLFNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTRYLYEEY 166
Query: 188 FENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYAS 247
+ YYK+ ++D RI +P+Q L DV +FC+ + +L + D +LY ++L S
Sbjct: 167 LQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIG 226
Query: 248 PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN 307
+ ++AY+L +G + GK+ EQ+ EGEYR ++SRL T++E IAFY G
Sbjct: 227 AQGPASMMAYLLVSGLFLTRLRRPIGKMTIMEQKYEGEYRYVNSRLITNSEEIAFYNGNK 286
Query: 308 KEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDT 367
+E+ I F+ L H+ + + G I + KY+ V +++ PF P
Sbjct: 287 REKQTIHSVFRKLVEHLHNFIFFRFSMGFIDSIIAKYVATVVGYLVVSRPFL-DLAHPRH 345
Query: 368 STLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXXXXXXGYADRIHELMVISREL---- 423
+++L + +++ + Q+LG G+ RI ELM + ++L
Sbjct: 346 LHSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGR 405
Query: 424 ------SIEDK-------SPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEP 470
S ++K SP G+ + N I+F V + TP G++L+++L+ +V
Sbjct: 406 YERTMVSQQEKGIEGAQASPLVPGAGEIINTDNIIKFDHVPLATPNGDILIQDLSFEVRS 465
Query: 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLR 530
G+N+LI GPNG GKSSLFRVLG LWPL G + KP G ++FYVPQRPY +GTLR
Sbjct: 466 GANVLICGPNGCGKSSLFRVLGELWPLFGGRLTKPERG-----KLFYVPQRPYMTLGTLR 520
Query: 531 DQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI-NWGDELSLGEQQRLG 588
DQ+IYP DQ+ ++ + E L NV L ++L+R + +W D LS GE+QR+
Sbjct: 521 DQVIYPDGKEDQKKRGISDQVLKEYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMA 580
Query: 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648
MARLFYHKP+FAILDECTSAV+ D+E+ + R +G + T+SHR +L H+ L +D
Sbjct: 581 MARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHMD 640
Query: 649 GEGEW 653
G G +
Sbjct: 641 GRGNY 645
|
|
| ZFIN|ZDB-GENE-040426-2868 abcd3a "ATP-binding cassette, sub-family D (ALD), member 3a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 816 (292.3 bits), Expect = 7.9e-97, Sum P(2) = 7.9e-97
Identities = 206/612 (33%), Positives = 324/612 (52%)
Query: 67 KAVANRSNIKKANQK-KGGLKSLQVL--AAILLSEMGKMGARD---LLALVGIVVLRTAL 120
K AN N +K +K + + L + + IL + K +++ LL + ++V RT
Sbjct: 39 KGSANELNSEKDGKKERAAVDKLFFIRISRILKIMVPKFFSKETWYLLLIAVMLVTRTYC 98
Query: 121 SNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTM-HSTSKYITGTLSLQFRKIV 179
+ + G + +A + R F+ N + +S + ++ K L L FR +
Sbjct: 99 DVWMIQ-NGTMIESAIIGRSTKGFKKYLFNFMTAMPISALVNNFLKLGLNELKLCFRVRL 157
Query: 180 TKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYT 239
TK ++ Y + YYK+ ++D RI + +Q L DV RFC+ + +L + + D LY
Sbjct: 158 TKHLYDEYLKGYTYYKMGNLDNRIANADQLLTQDVERFCNSVVDLYSNLSKPLLDIGLYI 217
Query: 240 WRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAES 299
++L + + ++AY+L +G + GK+ EQ+ EGEYR ++SRL T++E
Sbjct: 218 FKLTTAIGAQGPATMMAYLLISGLFLTRLRRPIGKMTVTEQKYEGEYRYVNSRLITNSEE 277
Query: 300 IAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF 359
IAFY G +E+ I FK L H+ + + GM+ + KY V +++ PF
Sbjct: 278 IAFYNGNTREKQTIHSTFKKLVDHLHNFIFFRFSMGMVDSIIAKYFATVVGYLVVSRPFL 337
Query: 360 AGNLKPDTS-TLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXXXXXXGYADRIHELMV 418
NL A++L + +++ + Q+LG G+ RI ELM
Sbjct: 338 --NLSHSRHLNSSHAELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLSGFTARITELMR 395
Query: 419 ISREL------------SIEDKSPQRN---GSRNYFSEANYIEFSGVKVVTPTGNVLVEN 463
+ +EL S +D S + GS + N I+F + TP G+VL+ +
Sbjct: 396 VLKELNSGKYERTMVSQSEKDASEKLTLVPGSGRIINIDNIIKFDHTPLATPNGDVLIRD 455
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523
L +V+ G+N+L+ GPNG GKSSLFRVLG LWPL G++ KP G ++FYVPQRPY
Sbjct: 456 LCFEVKSGTNVLVCGPNGCGKSSLFRVLGELWPLFGGNLTKPERG-----KLFYVPQRPY 510
Query: 524 TAVGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI-NWGDELSL 581
+G+LRDQ+IYP T + Q+ + ++ + E L NV L ++LDR + +W D LS
Sbjct: 511 MTLGSLRDQVIYPDTHESQKKKGISDLVLKEYLDNVQLGHILDREGSWDTVQDWMDVLSG 570
Query: 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFH 641
GE+QR+ MARLFYHKP+FAILDECTSAV+ D+E+ + R +G + T+SHR +L H
Sbjct: 571 GEKQRMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHH 630
Query: 642 DVVLSLDGEGEW 653
+ L +DG G +
Sbjct: 631 EYYLHMDGRGNY 642
|
|
| ZFIN|ZDB-GENE-050517-29 abcd3b "ATP-binding cassette, sub-family D (ALD), member 3b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 816 (292.3 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
Identities = 219/656 (33%), Positives = 339/656 (51%)
Query: 25 LLASGILVAGGT--AAY-LKSRFSSKKPD--AFGHYNGLGDSE--RKPDKAVANRSNIKK 77
L A +AG AAY LK R S++ G L D+E RK DKA + ++
Sbjct: 8 LTAGNSSIAGALLFAAYVLKQRLSTETNGYREKGSSKPLRDNEKDRKTDKAAVDNVFFRR 67
Query: 78 ANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFL 137
LK L A E G LL + ++V RT + G + +A +
Sbjct: 68 ICHI---LKILMPQA--FCKESGY-----LLLIAVMLVARTYCDVWMIH-NGTMIESAII 116
Query: 138 RRVPLFFQLISENILLCF-LLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKI 196
R F+ N + +S +++ K L L FR +T ++ Y + YY+I
Sbjct: 117 GRSTTTFKRYLVNFITVMPFISLVNNFLKLGINELKLCFRVRLTNHLYNDYLKGFTYYQI 176
Query: 197 SHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILA 256
++D RI +P+Q + DV +FC+ + +L + + D L+Y ++L + +L
Sbjct: 177 GNLDNRIANPDQLITQDVEKFCNSVVDLYSNVSKPLLDILIYIFKLNTAIGSLGPATLLG 236
Query: 257 YVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQK 316
Y+L +G ++ GK+ EQ+ EGEYR ++SRL T++E IAFY G +E+ I
Sbjct: 237 YLLLSGLLLTRLRRPIGKMTVTEQRYEGEYRYVNSRLITNSEEIAFYNGNLREKQTIIGT 296
Query: 317 FKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF-AGNLKPDTSTLGRAKM 375
F+ L H+ +H + G++ + KY+ V ++I PF N + ST A+
Sbjct: 297 FQKLVDHLSRFIHFRFSMGVMDSIIAKYIAMAVGYLVISRPFLDISNQRHINSTY--AER 354
Query: 376 LSNLRYHTSVIISLFQSLGTXXXXXXXXXXXXGYADRIHELMVISRELS----------- 424
L + +++SL Q+LG G+ RI E+ + +EL+
Sbjct: 355 LEDYYQSGRMLMSLAQALGRIVLAGREMTRLSGFTARITEIQEVLKELNSGKYERTMVTH 414
Query: 425 -IED----KSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 479
I+D K P G N I+F + + TP G++L+ +L+ +V G+N+L+ GP
Sbjct: 415 RIKDTAVDKIPLIPGRGEIIIADNKIKFEHIPLATPNGDILISDLSFEVSSGTNVLVCGP 474
Query: 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS 539
NG GKSSLFRVLG LWPL G + KP G ++FYVPQRPY +G+LRDQ+IYP T
Sbjct: 475 NGCGKSSLFRVLGELWPLCGGKLTKPERG-----KLFYVPQRPYMTLGSLRDQVIYPDTL 529
Query: 540 DQEVEPLTHGGMV-ELLKNVDLEYLLDRYPPEKEI-NWGDELSLGEQQRLGMARLFYHKP 597
+ +++ T ++ E L NV L ++L+R + + +W D LS GE+QR+ MARLFYHKP
Sbjct: 530 EDQMKKRTSDRVLKEYLDNVQLGHILEREGSWESVQDWMDVLSGGEKQRMAMARLFYHKP 589
Query: 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEW 653
+FAILDECTSAV+ D+E+ + R +G + T+SHR +L H+ L +DG G +
Sbjct: 590 QFAILDECTSAVSVDVEDFIYSHCRKVGITLFTVSHRKSLWKHHEYYLHMDGRGNY 645
|
|
| ASPGD|ASPL0000056142 AN1014 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 764 (274.0 bits), Expect = 4.1e-89, Sum P(2) = 4.1e-89
Identities = 198/600 (33%), Positives = 312/600 (52%)
Query: 76 KKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAA 135
KK + ++L L I++ R L++ +VLRT LS +A++ G L +
Sbjct: 82 KKVGVNREFFRNLARLLKIVIPGWRSKELRLLISHSVFLVLRTLLSLYVAELDGRLV-SN 140
Query: 136 FLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYK 195
+R F L ++ +++ K S+Q T+L Y +
Sbjct: 141 LVRGKGKDFLL---GLVWWMIVAGACDVHKLYVVLSSVQ---ACTQLPQAPYRSHSRQIP 194
Query: 196 ISH-------VDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASP 248
I H +D R+ +P+Q + DV RF L+EL + + D ++Y + L
Sbjct: 195 IKHDLLCDIGLDDRVKNPDQLITVDVSRFSDSLAELYSNLAKPILDMMIYNYSLSKSVGG 254
Query: 249 KYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENK 308
+ +F + V + +MR +P FGK ++ E +LEGE+R LHSRL + E IA Y G
Sbjct: 255 EGLFIMSLLVQLSANVMRALTPPFGKYVADEARLEGEFRFLHSRLIDYCEEIALYHGHEA 314
Query: 309 EESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTS 368
E+ + + + L +H+ +L + G ++DF++KY + +IL P F T
Sbjct: 315 EKDTLDKGYFTLIKHVNRILRRRLYHGFMEDFVIKYFWGALGLILCSVPVFFRISDQVTQ 374
Query: 369 TLG-RAK-MLSNLRYHTSVIISLFQSLGTXXXXXXXXXXXXGYADRIHELMVISREL--- 423
T+G R + ++N R +++S + G G+ R+ L+ + +L
Sbjct: 375 TMGDRTESFVTNRR----MLLSSSDAFGRLMFSYKEISELAGFTARVSSLLDVMDDLLAG 430
Query: 424 SIEDK-----SPQRNGS----RNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNL 474
E K S + N + R E++ IEF+ V +V+P G+VLV LT V PG +L
Sbjct: 431 RFEKKLVSSASTEENAAVLSGRGIVEESDAIEFTDVPIVSPNGDVLVRKLTFTVHPGDHL 490
Query: 475 LITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI 534
LI GPNG GKSSLFR+LGGLWP+ G + KP ++IFY+PQRPY + GTLR Q+I
Sbjct: 491 LIVGPNGCGKSSLFRILGGLWPVYGGRVKKPRF-----EDIFYIPQRPYLSRGTLRQQVI 545
Query: 535 YPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPP--EKEINWGDELSLGEQQRLGMAR 591
YP + + +T + ++L V++ ++DR P + E W D LS+G QQR+ MAR
Sbjct: 546 YPDGVREMRAKGITDDDLYDVLSVVEIASVVDR-PDGWDAEEEWRDVLSIGLQQRIAMAR 604
Query: 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEG 651
LFYH+PKFAILDECTS+VT ++E + +GT+ +T+SHR +L +H ++L DG+G
Sbjct: 605 LFYHRPKFAILDECTSSVTLEIERVMYETAKKLGTTLMTVSHRRSLWKYHKMILQFDGQG 664
|
|
| UNIPROTKB|Q5F4B9 ABCD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 1.5e-82, P = 1.5e-82
Identities = 201/567 (35%), Positives = 306/567 (53%)
Query: 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCF-LLSTMHSTSK 165
LL + ++V+RT + + G + +A + R F+ N + +S +++ K
Sbjct: 88 LLLIAVMLVVRTYCDIWMIQ-NGTVIESAIIGRSRKDFKKYLFNFIAAMPAISLVNNFLK 146
Query: 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELV 225
Y L L FR +TK ++ Y + YYK+ ++D RI +P+Q L DV +FC+ + +L
Sbjct: 147 YGLNELKLCFRVRLTKYLYEEYLKAYTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLY 206
Query: 226 QDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGE 285
+ D +LY ++L S + ++AY++ +G + GK+ EQ+ EGE
Sbjct: 207 SNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLIVSGFFLTRLRRPIGKMTIIEQKYEGE 266
Query: 286 YRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYL 345
YR ++SRL T++E IAFY G +E+ I + F+ L H+ + + G I + KYL
Sbjct: 267 YRYVNSRLITNSEEIAFYNGNLREKQTIHRTFRKLVEHLHNFILFRFSMGFIDTIIAKYL 326
Query: 346 GATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXXX 404
V +++ PF NL P A++L + +++ + Q+LG
Sbjct: 327 ATVVGYLVVSRPFL--NLADPRHQNSTHAELLEDYYQSGRMLLRMSQALGRIVLAGREMT 384
Query: 405 XXXGYADRIHELMVISRELS----------------IEDKSPQRNGSRNYFSEANYIEFS 448
G+ RI ELM + ++L+ I+ P GS + N I+F
Sbjct: 385 RLAGFTARITELMQVLKDLNSGKYQRTMVSQEKDADIKQALPLIPGSGEIINTDNLIKFD 444
Query: 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 508
V +VTP G+VL+++L +V G+N+LI GPNG GKSSLFRVLG LWPL G + KP G
Sbjct: 445 HVPLVTPNGDVLIQDLNFEVRSGANVLICGPNGCGKSSLFRVLGELWPLFGGRLTKPVRG 504
Query: 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLLDRY 567
++FYVPQRPY +GTLRDQ+IYP T DQ + ++ + E L NV L +L+R
Sbjct: 505 -----KLFYVPQRPYMTLGTLRDQVIYPDTLEDQRKKGISDQVLKEYLDNVQLGQILERE 559
Query: 568 PPEKEI-NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626
+ +W D LS GE+QR+ MARLFYHKP+FAILDECTSAV+ D+E + R +G
Sbjct: 560 GGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGI 619
Query: 627 SCITISHRPALVAFHDVVLSLDGEGEW 653
+ T+SHR +L HD L +DG G +
Sbjct: 620 TLFTVSHRKSLWKHHDFYLHMDGRGNY 646
|
|
| UNIPROTKB|A7Z038 ABCD3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 829 (296.9 bits), Expect = 6.9e-82, P = 6.9e-82
Identities = 193/564 (34%), Positives = 304/564 (53%)
Query: 108 LALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCF-LLSTMHSTSKY 166
L L+ ++++ + G L + + R F+ N + L+S +++ K+
Sbjct: 86 LILIAVMLVSRTFCDVWMIQNGTLIESGIIGRSRKDFKKYLFNFIAAMPLISLVNNFLKF 145
Query: 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQ 226
L L FR +TK ++ Y + YYK+ ++D RI +P+Q L DV +FC+ + +L
Sbjct: 146 GLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYS 205
Query: 227 DDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEY 286
+ D +LY +RL S + ++AY+L +G + GK+ EQ+LEGEY
Sbjct: 206 NLSKPFLDIVLYIFRLTSAIGAQGPASMMAYLLVSGLFLTRIRRPIGKMTITEQKLEGEY 265
Query: 287 RQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLG 346
R ++SRL T++E +AFY G +E+ I F+ L H+ + + G I + KYL
Sbjct: 266 RYVNSRLITNSEEVAFYNGNKREKQTIHSVFQKLVEHLHNFILFRFSMGFIDSIIAKYLA 325
Query: 347 ATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXXXXX 406
V +++ PF P +++L + +++ + Q+LG
Sbjct: 326 TVVGYLVVSRPFL-DLAHPRHLKSSHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRL 384
Query: 407 XGYADRIHELMVISRELSIEDK------SPQRNGSRNY---------FSEANYIEFSGVK 451
G+ RI ELM + ++L+ + K S Q G+++ + N I+F V
Sbjct: 385 AGFTARITELMQVLKDLN-QGKYERTMVSQQEKGAQDIPLIPGIGEIINTDNIIKFDHVP 443
Query: 452 VVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDL 511
+ TP G++L+ +L +V G+N+LI GPNG GKSSLFRVLG LWPL G + KP G
Sbjct: 444 LATPNGDILIRDLNFEVRSGANVLICGPNGCGKSSLFRVLGELWPLFGGRLTKPERG--- 500
Query: 512 NKEIFYVPQRPYTAVGTLRDQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
++FYVPQRPY +GTLRDQ+IYP DQ+ + ++ + E L NV L ++L+R
Sbjct: 501 --KLFYVPQRPYMTLGTLRDQVIYPDGKEDQKKKGISDLVLKEYLDNVQLSHILEREGGW 558
Query: 571 KEI-NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCI 629
+ +W D LS GE+QR+ MARLFYHKP+FAILDECTSAV+ D+E+ + R +G +
Sbjct: 559 DSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCREVGITLF 618
Query: 630 TISHRPALVAFHDVVLSLDGEGEW 653
T+SHR +L H+ L +DG G +
Sbjct: 619 TVSHRKSLWKHHEYYLHMDGRGNY 642
|
|
| ZFIN|ZDB-GENE-050517-27 abcd1 "ATP-binding cassette, sub-family D (ALD), member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 538 (194.4 bits), Expect = 7.8e-82, Sum P(2) = 7.8e-82
Identities = 109/225 (48%), Positives = 157/225 (69%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
I+ + ++TPTG+V+V +L ++V+ G +LLITGPNG GKSSLFR+L GLWP+ SG + K
Sbjct: 482 IKCENLPIITPTGDVVVSSLNMQVDEGMHLLITGPNGCGKSSLFRILSGLWPVYSGVLYK 541
Query: 505 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP--LTHGGMVELLKNVDLEY 562
P D +FY+PQRPY +VGTLRDQ+IYP S QE++ +T + E+L+ V L Y
Sbjct: 542 PS--PD---HMFYIPQRPYMSVGTLRDQVIYP-HSVQEMQEKGITDRQLEEILQTVSLRY 595
Query: 563 LLDRYPPEKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV 621
+L+R ++ W D LS GE+QR+GMAR+FYHKP++A+LDECTSAV+ D+E +
Sbjct: 596 ILEREGGWDAVSDWKDVLSGGEKQRMGMARMFYHKPQYALLDECTSAVSIDVEGKIFEAA 655
Query: 622 RAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVT 666
+ G S ++I+HRP+L +H +L DGEG WR +K D S+ ++
Sbjct: 656 KDAGISLLSITHRPSLWKYHSHLLQFDGEGGWRF-EKLDASTRIS 699
|
|
| WB|WBGene00004058 pmp-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 827 (296.2 bits), Expect = 1.1e-81, P = 1.1e-81
Identities = 190/576 (32%), Positives = 311/576 (53%)
Query: 108 LALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQL-ISENILLCFLLSTMHSTSKY 166
+ ++G V+L +++ A+ + R P+ F + + + L +S +++ K+
Sbjct: 94 MIVIGFVLLARTIADVYMITNATSVEASIVDRSPIMFAMSVFKYFLNLPAISLINALLKF 153
Query: 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQ 226
L L+FR+ +TK ++ +Y YY+IS++D RI +P+Q L DV +FC + EL
Sbjct: 154 SLSELKLRFRENLTKYLYGKYLGGFTYYQISNLDSRIQNPDQLLTQDVEKFCDGIVELYS 213
Query: 227 DDLTAVTDGLLYTWRL---CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLE 283
+ + D LY ++L + P +F Y++ + ++ KL +EQ LE
Sbjct: 214 NMTKPILDVFLYVFKLGRALGWEGPGLLF---GYLMASMVVLTKLRRPIAKLTVEEQVLE 270
Query: 284 GEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLK 343
GEYR ++SRL ++E IAFY G E+ + F L H+R + + G + + + K
Sbjct: 271 GEYRYVNSRLIMNSEEIAFYQGNKPEKQALMGSFNNLVYHLRKTIMFRFTLGFVDNIVGK 330
Query: 344 YLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXX 403
Y+ V + + FF N + + R +++ L + +++ L ++LG
Sbjct: 331 YITNIVGWVACAKTFFDVN-NEKFNEMDRNELMQELYNNGRMMLKLSEALGRLALAGRDM 389
Query: 404 XXXXGYADRIHELMVISRELS--------IEDKSPQRN-------GSRNYFSEANYIEFS 448
G+ R+ LM + ++ + D+S + GS ++ N I+F
Sbjct: 390 TRLSGFTTRVDTLMKVLDDMKAGRFEKAQVADESGEEGQRLMLKAGSGKLLAQDNMIKFD 449
Query: 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 508
V +VTP G++L+E+L+ +V G N+L+ GPNG GKSSLFR LG LWP++ G + KP G
Sbjct: 450 EVPLVTPNGDILIESLSFEVPSGRNVLVCGPNGCGKSSLFRTLGELWPVMGGTLTKPAKG 509
Query: 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRY 567
++FYVPQRPY +GTLRDQ+IYP TS D +++ ++ + ++L+NV L +L+R
Sbjct: 510 -----KLFYVPQRPYMTLGTLRDQVIYPDTSFDMKMKGMSDKDLEQMLENVQLTNILERE 564
Query: 568 PPEKEI-NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626
+ +W D LS GE+QR+ MARLFYHKP+FAILDECTSAV+ D+E R M
Sbjct: 565 GGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGAMYRLCREMNI 624
Query: 627 SCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGS 662
+ T+SHR +L +H+ L +DG G +R D S
Sbjct: 625 TLFTVSHRKSLWKYHEYSLYMDGRGSYRFEQIDDQS 660
|
|
| WB|WBGene00004061 pmp-4 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 2.3e-81, Sum P(2) = 2.3e-81
Identities = 107/218 (49%), Positives = 157/218 (72%)
Query: 440 SEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499
SEA+ I + V +VTP G+V+V+N+TL + PG ++LITGPNG GKSSLFR+LGGLWP+
Sbjct: 463 SEADEIILNSVPIVTPNGDVVVKNMTLTISPGMHVLITGPNGCGKSSLFRILGGLWPVYR 522
Query: 500 GHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNV 558
GH+ KP SD ++Y+PQRPY +GTLRDQ+IYP T+ Q + +T ++ +L+ V
Sbjct: 523 GHLEKPT--SD---RMYYIPQRPYMTLGTLRDQVIYPDTTIQMRRQGITDQDLMTMLRIV 577
Query: 559 DLEYLLDRYPP-EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 617
LE++++R + + +W D LS GE+QR+GMAR+FYH+PK+A+LDECTSAV+ D+E
Sbjct: 578 HLEHIVEREGGWDAQNDWMDVLSGGEKQRMGMARVFYHRPKYALLDECTSAVSIDVEGSI 637
Query: 618 CAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRV 655
++ G + +T++HRP+L FH +L DGEG ++V
Sbjct: 638 YQAIKDSGITLLTVTHRPSLWKFHTHLLQYDGEGGYKV 675
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q94FB9 | AB1D_ARATH | 3, ., 6, ., 3, ., 4, 7 | 0.7738 | 0.9672 | 0.9940 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_fgenesh4_pm.C_LG_V0072 | peroxisomal membrane ABC transporter family, PMP family (1310 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1374 | |||
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-137 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-134 | |
| pfam06472 | 282 | pfam06472, ABC_membrane_2, ABC transporter transme | 9e-95 | |
| pfam06472 | 282 | pfam06472, ABC_membrane_2, ABC transporter transme | 4e-90 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-88 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-75 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-73 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 6e-55 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-27 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-25 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-24 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-23 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-22 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 8e-22 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-21 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-21 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-20 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-20 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 6e-20 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-20 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-19 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-19 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-19 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-19 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-18 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-18 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-18 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-18 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-18 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 7e-18 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 8e-18 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-17 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-17 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-16 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-16 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-16 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-16 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 7e-16 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-15 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-15 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-15 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-14 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-14 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-14 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-14 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 7e-14 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-13 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-13 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-13 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-13 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-13 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-13 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-13 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-13 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 6e-13 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 7e-13 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 7e-13 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-13 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 8e-13 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-12 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-12 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-12 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-12 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-12 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-12 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 6e-12 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 7e-12 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 8e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 9e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-11 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-11 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-11 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-11 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 5e-11 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 7e-11 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 9e-11 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 9e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 9e-11 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-10 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-10 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 5e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-10 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-10 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-10 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 7e-10 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 7e-10 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 8e-10 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-09 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-09 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-09 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-09 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-09 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-09 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-09 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-09 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-09 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-09 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-09 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-09 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-09 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 5e-09 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 6e-09 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 6e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-09 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 7e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 9e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 9e-09 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 9e-09 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-08 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-08 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-08 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-08 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-08 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-08 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-08 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-08 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-08 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-08 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-08 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 5e-08 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 6e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-08 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-08 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 7e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 7e-08 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 8e-08 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 8e-08 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 9e-08 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 9e-08 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 9e-08 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-07 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-07 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-07 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-07 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-07 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-07 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-07 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-07 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-07 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-07 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-07 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-07 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-07 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-07 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 4e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 4e-07 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-07 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-07 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 6e-07 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-07 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 6e-07 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 7e-07 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 9e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 9e-07 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 9e-07 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-06 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-06 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-06 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-06 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-06 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-06 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-06 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-06 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-06 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-06 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-06 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 3e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-06 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-06 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-06 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 5e-06 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 7e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 7e-06 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 8e-06 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-05 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-05 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-05 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-05 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-05 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-05 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-05 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-05 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-05 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-05 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-05 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-05 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 5e-05 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 6e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 6e-05 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 8e-05 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 8e-05 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 8e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 9e-05 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 9e-05 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-04 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-04 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-04 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-04 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-04 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 2e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-04 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-04 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-04 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-04 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-04 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-04 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-04 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-04 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-04 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 6e-04 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 6e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 7e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 7e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 7e-04 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-04 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 9e-04 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 9e-04 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 0.001 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 0.001 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 0.001 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.001 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 0.001 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.001 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.001 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 0.001 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.001 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 0.001 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 0.001 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 0.002 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 0.002 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 0.002 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.002 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.002 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.002 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.002 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 0.002 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 0.002 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.002 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.002 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 0.002 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 0.003 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 0.003 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 0.003 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.003 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.003 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 0.003 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 0.003 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 0.003 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 0.004 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 0.004 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 0.004 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 0.004 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 435 bits (1120), Expect = e-137
Identities = 221/653 (33%), Positives = 336/653 (51%), Gaps = 95/653 (14%)
Query: 741 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRL 800
++ + K+L+P VF K+ L+ +AFL+VSRT++S +A+L+G ++ + +F +
Sbjct: 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWI 137
Query: 801 IGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDA 860
+ L + +SFI +I++L L L +R+R+T++L YL +FYKV N+ S+ +
Sbjct: 138 LFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNP 197
Query: 861 DQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLR 920
DQ +T D+EK + L + + KP +D++ +++++ G G A L+AY+ L
Sbjct: 198 DQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLT 257
Query: 921 SVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLL 980
+ P G LT EQ LEG +R++H RL ++E +AF+ G EK + S F L+EH L
Sbjct: 258 KLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNL 317
Query: 981 LLKKKWLFGILDDFVTKQLPHNVTWGLSLLYA-----MEHKGDRALVSTQGELAHAL--- 1032
++K ++ +G LD+ V K TW L A + L ++ EL
Sbjct: 318 IIKFRFSYGFLDNIVAK-----YTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNN 372
Query: 1033 -RFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGD--------DEI 1083
R L A G ++ R L+G R+ L ++LD + G+ E
Sbjct: 373 GRLLLKAAD----ALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIES 428
Query: 1084 SGSSQHKWNSTD------YQDS-ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNG 1136
N YQD+ I F + ++TP+ +L L+FE+ G +LL+ GPNG
Sbjct: 429 GREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNG 488
Query: 1137 SGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPL 1196
GKSS+FR+L LWPV G LTKP++ +FYVPQRPY LGTLRDQIIYP
Sbjct: 489 CGKSSLFRILGELWPVYGGRLTKPAK---------GKLFYVPQRPYMTLGTLRDQIIYPD 539
Query: 1197 SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 1256
S E+ + R L D L+ IL+ V+L+++LER E GW A +W D+L
Sbjct: 540 SSEDMKRRGLS---------------DKDLEQILDNVQLTHILER-EGGWSAVQDWMDVL 583
Query: 1257 SLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILD 1316
S GE+QR+ M ARLF+HKP+F ILD
Sbjct: 584 SGGEKQRIAM------------------------------------ARLFYHKPQFAILD 607
Query: 1317 ECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWEL 1369
ECT+A SVDVE +YRL ++ GIT + S R +L +H L +DG G ++
Sbjct: 608 ECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHEYLLY-MDGRGGYQF 659
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 428 bits (1101), Expect = e-134
Identities = 212/624 (33%), Positives = 331/624 (53%), Gaps = 51/624 (8%)
Query: 65 PDKAVANRSNIKKANQK--KGG--LKSLQVLAAILL-----SEMGKMGARDLLALVGIV- 114
V S I+ A +K G L L L IL+ E G LL L+ +
Sbjct: 52 ELTIVGKHSTIEGAKKKAHVNGVFLGKLDFLLKILIPRVFCKETG------LLILIAFLL 105
Query: 115 VLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLL-----STMHSTSKYITG 169
V RT LS +A + G + ++ +RR P F I L + L S ++S KY+
Sbjct: 106 VSRTYLSVYVATLDGQI-ESSIVRRSPRNFAWI----LFKWFLIAPPASFINSAIKYLLK 160
Query: 170 TLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDL 229
L L+FR +T+ ++++Y +YK+S++D RI +P+Q L DV +FC + EL +
Sbjct: 161 ELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLT 220
Query: 230 TAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQL 289
+ D +LY+++L + + AY+ G ++ P GKL +EQ LEGEYR +
Sbjct: 221 KPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYV 280
Query: 290 HSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATV 349
HSRL ++E IAFY G E+ + F L H+ +++ + +G + + + KY + V
Sbjct: 281 HSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAV 340
Query: 350 AVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGY 409
++ + P F P + +++ + +++ +LG L ++ R + RL+G+
Sbjct: 341 GLVAVSIPIFDKT-HPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGF 399
Query: 410 ADRIHELMVI-----------SRELSIED------KSPQRNGSRNYFSEANYIEFSGVKV 452
R+ L+ + R IE S G + N I+F + +
Sbjct: 400 TARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPL 459
Query: 453 VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN 512
VTP G+VL+E+L+ +V G+NLLI GPNG GKSSLFR+LG LWP+ G + KP G
Sbjct: 460 VTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGK--- 516
Query: 513 KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP-LTHGGMVELLKNVDLEYLLDRYPPEK 571
+FYVPQRPY +GTLRDQ+IYP +S+ L+ + ++L NV L ++L+R
Sbjct: 517 --LFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWS 574
Query: 572 EI-NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCIT 630
+ +W D LS GE+QR+ MARLFYHKP+FAILDECTSAV+ D+E R G + +
Sbjct: 575 AVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFS 634
Query: 631 ISHRPALVAFHDVVLSLDGEGEWR 654
+SHR +L +H+ +L +DG G ++
Sbjct: 635 VSHRKSLWKYHEYLLYMDGRGGYQ 658
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|219046 pfam06472, ABC_membrane_2, ABC transporter transmembrane region 2 | Back alignment and domain information |
|---|
Score = 306 bits (785), Expect = 9e-95
Identities = 109/275 (39%), Positives = 167/275 (60%)
Query: 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFF 144
L+ L L IL A LLAL ++VLRT LS +A++ G L +A + F
Sbjct: 8 LRRLWRLLKILFPRWFSKEAGLLLALAALLVLRTFLSVLVAQLDGQLVKALVAKNARGFI 67
Query: 145 QLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRIT 204
+L+ + LL S ++S KY+T L+L+FR +T+ +H Y +N YYK+S++DGRI
Sbjct: 68 RLLLKWALLAVPASFVNSALKYLTQKLALRFRTRLTRHLHDEYLKNRTYYKLSNLDGRID 127
Query: 205 HPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTM 264
+P+QR+ DV +FCS S+L + L + D +L+T+ L + + YVL + +
Sbjct: 128 NPDQRITQDVEKFCSSSSDLYSNLLKPILDIILFTFILWRLSGWLGPAILFLYVLLSTVI 187
Query: 265 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324
+R P FGKL+++EQ+LEG++R LHSRL T+AE IAFY GE +E+ +Q++FK+L HM
Sbjct: 188 LRRLGPPFGKLVAEEQRLEGDFRYLHSRLITNAEEIAFYRGEEREKKQLQRRFKSLIDHM 247
Query: 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF 359
R +L W+G I+DF+LKY + + +L P F
Sbjct: 248 RRILRRRLWYGFIEDFVLKYTWSILGYVLCAVPIF 282
|
This domain covers the transmembrane of a small family of ABC transporters and shares sequence similarity with pfam00664. Mutations in this domain in human ABCD3 (PMP70) are believed responsible for Zellweger Syndrome-2; mutations in human ABCD1 (ALD) are responsible for recessive X-linked adrenoleukodystrophy. A Saccharomyces cerevisiae homolog is involved in the import of long-chain fatty acids. Length = 282 |
| >gnl|CDD|219046 pfam06472, ABC_membrane_2, ABC transporter transmembrane region 2 | Back alignment and domain information |
|---|
Score = 292 bits (751), Expect = 4e-90
Identities = 101/273 (36%), Positives = 170/273 (62%)
Query: 741 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRL 800
R+ + K+L P F K+ LLA+A L+V RT++S +A L+G VK ++ ++ F+RL
Sbjct: 10 RLWRLLKILFPRWFSKEAGLLLALAALLVLRTFLSVLVAQLDGQLVKALVAKNARGFIRL 69
Query: 801 IGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDA 860
+ L + +SF+ ++++LT +LAL +R R+T+HL YL+ ++YK+ N+ + +
Sbjct: 70 LLKWALLAVPASFVNSALKYLTQKLALRFRTRLTRHLHDEYLKNRTYYKLSNLDGRIDNP 129
Query: 861 DQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLR 920
DQRIT D+EK + S L + ++KP +DI+ FT+ + L+G G AIL+ Y+LL LR
Sbjct: 130 DQRITQDVEKFCSSSSDLYSNLLKPILDIILFTFILWRLSGWLGPAILFLYVLLSTVILR 189
Query: 921 SVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLL 980
+ P FG L + EQ+LEG FR++H RL +AE +AF+ G REK ++ RF+ L++H
Sbjct: 190 RLGPPFGKLVAEEQRLEGDFRYLHSRLITNAEEIAFYRGEEREKKQLQRRFKSLIDHMRR 249
Query: 981 LLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAM 1013
+L+++ +G ++DFV K + + L +
Sbjct: 250 ILRRRLWYGFIEDFVLKYTWSILGYVLCAVPIF 282
|
This domain covers the transmembrane of a small family of ABC transporters and shares sequence similarity with pfam00664. Mutations in this domain in human ABCD3 (PMP70) are believed responsible for Zellweger Syndrome-2; mutations in human ABCD1 (ALD) are responsible for recessive X-linked adrenoleukodystrophy. A Saccharomyces cerevisiae homolog is involved in the import of long-chain fatty acids. Length = 282 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 300 bits (770), Expect = 1e-88
Identities = 153/587 (26%), Positives = 254/587 (43%), Gaps = 71/587 (12%)
Query: 105 RDLLALVGIVVLRTALSNR----LAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTM 160
+ L+ ++ LS R L G + A R + F+Q + ++ LL +
Sbjct: 43 KRAWLLLIGILALILLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLL 102
Query: 161 HSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR--ITHPEQRLASDVPRFC 218
+ ++ L L++R+ +TK + R+ + YY+++ G I +P+QR+ D+ F
Sbjct: 103 NVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFT 162
Query: 219 SELSELVQDDLTAVTD-------------GLLYTWRLCSYASPKYVFW-ILAYVLGAGTM 264
+L L +V GL +T S+ P Y+ W ++ Y + A +
Sbjct: 163 ETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLL 222
Query: 265 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324
+L + Q+LE ++R R+R +AE+IA Y GE E + +F
Sbjct: 223 THLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRF------- 275
Query: 325 RVVLHDHWWFGMIQDFLLKYLGAT---------VAVILIIEPFFAGNLK-PDTSTLGRA- 373
VL + W + ++ + +++ +F+G + A
Sbjct: 276 DAVLGN-WR--RLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAF 332
Query: 374 -KMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQR 432
++ S+L + I + ++ + RL E ++ + P R
Sbjct: 333 GQVHSSLSW----FIDNYDAIADWRATLLRL----------AEFRQALEAAQMDTEKPAR 378
Query: 433 NGSRNYFSEAN--YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRV 490
G R F + I + + TP G L+ L +V PG LLITG +G+GK+SL R
Sbjct: 379 TGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRA 438
Query: 491 LGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGG 550
L GLWP SG I+ P + + ++PQRPY GTLR+ L YP + +
Sbjct: 439 LAGLWPWGSGRISMPA-----DSALLFLPQRPYLPQGTLREALCYPNAA----PDFSDAE 489
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
+V +L V L L +R ++E W LS GEQQRL ARL HKPK+ LDE TSA+
Sbjct: 490 LVAVLHKVGLGDLAERL--DEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547
Query: 611 TDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGEGEWRV 655
+ E+R ++ + I++ HRP L FH L L + +
Sbjct: 548 EETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLDDAGGQN 594
|
Length = 604 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 247 bits (633), Expect = 1e-75
Identities = 90/209 (43%), Positives = 117/209 (55%), Gaps = 43/209 (20%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IE + + TP G VL+++L+ +++PG LLITGP+G+GKSSLFR L GLWP SG I
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 505 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
P ++ ++PQRPY +GTLR+QLIYP
Sbjct: 61 PEGE-----DLLFLPQRPYLPLGTLREQLIYP---------------------------- 87
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM 624
W D LS GEQQRL ARL HKPKF LDE TSA+ + E+R ++ +
Sbjct: 88 ----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL 137
Query: 625 GTSCITISHRPALVAFHDVVLSLDGEGEW 653
G + I++ HRP+L FHD VL LDGEG W
Sbjct: 138 GITVISVGHRPSLWKFHDRVLDLDGEGGW 166
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 3e-73
Identities = 143/600 (23%), Positives = 238/600 (39%), Gaps = 105/600 (17%)
Query: 791 EQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKV 850
+D A+F + + V + + + + L L L WR +T+ LL +L +Y++
Sbjct: 79 RRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRL 138
Query: 851 -FNMSSKSID-ADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFT---W----RMKALTG 901
ID DQRI D+ T L G+++ + ++ FT W + G
Sbjct: 139 AQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIG 198
Query: 902 QRGVAI-------LYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESV 954
I + Y + + L Q+LE FR+ R+R +AE++
Sbjct: 199 GFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAI 258
Query: 955 AFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME 1014
A + G E+ ++ RF +L + + L + + +G +
Sbjct: 259 ALYRGEKVERRRLDDRFDAVLGN----------WRRLVRAQIRLTWFQLGYGWLSVVLPI 308
Query: 1015 HKGDRALVSTQ---GELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEE 1071
S Q G L A+ V S + ++ + + + R+ E +
Sbjct: 309 LIAAPRYFSGQITFGGLMQAVGAFGQVHS----SLSWFIDNYDAIADWRATLLRLAEFRQ 364
Query: 1072 LLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLV 1131
L+AAQ ++ + + + + I+ L + TP + L +L FE+ PG+ LL+
Sbjct: 365 ALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLI 424
Query: 1132 TGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQ 1191
TG +G+GK+S+ R L GLWP SG ++ P + + ++PQRPY GTLR+
Sbjct: 425 TGESGAGKTSLLRALAGLWPWGSGRISMP---------ADSALLFLPQRPYLPQGTLREA 475
Query: 1192 IIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN 1251
+ YP + + D+ L +L V L L ER D
Sbjct: 476 LCYPNA--------------------APDFSDAELVAVLHKVGLGDLAER----LDEEDR 511
Query: 1252 WEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPK 1311
W+ +LS GEQQRL ARL HKPK
Sbjct: 512 WDRVLSGGEQQRLAF------------------------------------ARLLLHKPK 535
Query: 1312 FGILDECTNATSVDVEEQLYRLAKDM--GITFVTSSQRPALIPFHSLELRLIDGEGNWEL 1369
+ LDE T+A + E++LY+L K+ T ++ RP L FHS +L L + +
Sbjct: 536 WVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLEL-LDDAGGQN 594
|
Length = 604 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 6e-55
Identities = 90/268 (33%), Positives = 116/268 (43%), Gaps = 102/268 (38%)
Query: 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 1159
I L + TP ++L + L+FEI PG LL+TGP+G+GKSS+FR L GLWP SG +
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 1160 PSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTT 1219
P G + ++PQRPY LGTLR+Q+IYP
Sbjct: 61 P---------EGEDLLFLPQRPYLPLGTLREQLIYP------------------------ 87
Query: 1220 NILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSIN 1279
WD D+LS GEQQRL
Sbjct: 88 --------------------------WD------DVLSGGEQQRLAF------------- 102
Query: 1280 KISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGI 1339
ARL HKPKF LDE T+A + E++LY+L K++GI
Sbjct: 103 -----------------------ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGI 139
Query: 1340 TFVTSSQRPALIPFHSLELRLIDGEGNW 1367
T ++ RP+L FH L L DGEG W
Sbjct: 140 TVISVGHRPSLWKFHDRVLDL-DGEGGW 166
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-27
Identities = 63/214 (29%), Positives = 93/214 (43%), Gaps = 54/214 (25%)
Query: 445 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
IEF V P V ++++L ++PG + I GP+GSGKS+L ++L L+ SG I
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 504 KPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557
GV L K I YVPQ P+ GT+R+ N
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRE-------------------------N 95
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 617
+ LS G++QR+ +AR P ILDE TSA+ + E
Sbjct: 96 I--------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALI 135
Query: 618 CAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
+RA+ G + I I+HR + + D ++ LD
Sbjct: 136 LEALRALAKGKTVIVIAHRLSTIRDADRIIVLDD 169
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-25
Identities = 103/437 (23%), Positives = 173/437 (39%), Gaps = 63/437 (14%)
Query: 247 SPKYVFWILAYVLGAGTMMRNFSPAFG---------------KLMSKEQQLEGEYRQLHS 291
VF + ++G+ ++ + S L K ++L R+
Sbjct: 129 VLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALG 188
Query: 292 RLRTHA-ESI-------AFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLK 343
L ES+ AF E ++F+ +R + L+
Sbjct: 189 ELNARLLESLSGIRVIKAFGA-----EDRELKRFEEANEELRRANLRASRLEALLAPLML 243
Query: 344 YLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403
L + V+++ G + +L + + + Y ++ L + L L
Sbjct: 244 LLSSLGTVLVL----ALGGFLVLSGSLTVGALAAFILY----LLRLLTPILQLGEVVSLL 295
Query: 404 NRLSGYADRIHELMVISREL-SIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVE 462
R S A+R+ EL+ E+ D GS IEF V P +++
Sbjct: 296 QRASAAAERLFELLDEEPEVEDPPDPLKDTIGS---------IEFENVSFSYPGKKPVLK 346
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516
+++ +EPG + I GP+GSGKS+L ++L L+ SG I G+ L K I
Sbjct: 347 DISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406
Query: 517 YVPQRPYTAVGTLRDQLIY--PLTSDQEVEP-LTHGGMVELLKNVDLEYLLDRYPPEKEI 573
V Q P GT+R+ + P +D+E+E L E + N L D E+
Sbjct: 407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIAN--LPDGYDTIVGER-- 462
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITI 631
G LS G++QRL +AR P ILDE TSA+ T+ E ++ + G + + I
Sbjct: 463 --GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII 520
Query: 632 SHRPALVAFHDVVLSLD 648
+HR + + D ++ LD
Sbjct: 521 AHRLSTIKNADRIIVLD 537
|
Length = 567 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 3e-24
Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 18/217 (8%)
Query: 445 IEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
IEF V P ++N++L + G + I G GSGKS+L ++L GL+ SG +
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLI--YPLTSDQEV-EPLTHGGMVEL 554
G +DL + I YVPQ GTLRD + PL D+ + G+ +
Sbjct: 63 LDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDF 122
Query: 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+ D E+ G LS G++Q + +AR + P +LDE TSA+ + E
Sbjct: 123 VNKHPNGL--DLQIGER----GRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176
Query: 615 ERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
ER ++R + + I I+HRP+L+ D ++ +D
Sbjct: 177 ERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDS 213
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-23
Identities = 80/281 (28%), Positives = 129/281 (45%), Gaps = 29/281 (10%)
Query: 392 SLGTL----SISSR---RLNRLSGYADRIHELMVISREL-SIEDKSPQRNGSRNYFSEAN 443
+LG L ++ + RLS + V L I D P++ G +
Sbjct: 408 TLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPK 467
Query: 444 ---YIEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499
IEF V P ++E+L+L++ PG + I G +GSGKS+L ++L GL+
Sbjct: 468 LQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ 527
Query: 500 GHIAKPGVG-SDLNKE-----IFYVPQRPYTAVGTLRDQLI--YPLTSDQEV-EPLTHGG 550
G I GV +D++ + YV Q P+ G++R+ + P +D+E+ E G
Sbjct: 528 GRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAG 587
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
E ++N+ + Y D E N LS G++QRL +AR KPK +LDE TSA+
Sbjct: 588 AHEFIENLPMGY--DTPVGEGGAN----LSGGQRQRLALARALLSKPKILLLDEATSALD 641
Query: 611 TDMEERFCAKVRAMGTSC--ITISHRPALVAFHDVVLSLDG 649
+ E + + I I+HR + + D ++ LD
Sbjct: 642 PETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQ 682
|
Length = 709 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 3e-22
Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 55/213 (25%)
Query: 445 IEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
+E V P ++ N++ +EPG +L I GP+GSGKS+L R++ GL SG +
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557
G ++L + Y+PQ G++ + N
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAE-------------------------N 95
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 617
+ LS G++QRLG+AR Y P+ +LDE S + + E
Sbjct: 96 I--------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERAL 135
Query: 618 CAKVRAM---GTSCITISHRPALVAFHDVVLSL 647
+ A+ G + I I+HRP +A D +L L
Sbjct: 136 NQAIAALKAAGATRIVIAHRPETLASADRILVL 168
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 8e-22
Identities = 69/214 (32%), Positives = 102/214 (47%), Gaps = 17/214 (7%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+EFSGV V P + ++ V PG + + GP+G+GKS+L +L G G IA
Sbjct: 322 LEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAV 381
Query: 505 PGVG------SDLNKEIFYVPQRPYTAVGTLRD--QLIYPLTSDQEV-EPLTHGGMVELL 555
GV +I +VPQ P+ GT+ + +L P SD E+ E L G+ E +
Sbjct: 382 NGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFV 441
Query: 556 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
L LD E G LS G+ QRL +AR F +LDE T+ + + E
Sbjct: 442 A--ALPQGLDTPIGEG----GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEA 495
Query: 616 RFCAKVRAM--GTSCITISHRPALVAFHDVVLSL 647
+RA+ G + + ++HR AL A D ++ L
Sbjct: 496 EVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 1e-21
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 21/218 (9%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V +++++ ++PG + I GP G+GK++L +L + G I
Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 505 PGV-GSDLNKE-----IFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLK 556
G+ D++++ I V Q + GT+ + + P +D+EV E K
Sbjct: 63 DGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVI--------EAAK 114
Query: 557 NVDLEYLLDRYPP--EKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
+ + P + + G LS GE+Q L +AR PK ILDE TS + T+
Sbjct: 115 EAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET 174
Query: 614 EERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
E+ + + G + I I+HR + + D +L LD
Sbjct: 175 EKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDD 212
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-21
Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 24/241 (9%)
Query: 424 SIEDKSPQRNGSRNYFSEANY----IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 479
++ + GS AN I + P G + +L L ++ G + G
Sbjct: 296 TLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGA 355
Query: 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSDLNKEIFYVPQRPYTAVGTLRDQL 533
+G+GKS+L +L G G I G+ K+I +V Q PY GT+R+ +
Sbjct: 356 SGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENI 415
Query: 534 IY--PLTSDQEV-EPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGM 589
+ P SD+E+ L G++E + D L+ ++ G LS G+ QRL +
Sbjct: 416 LLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEG--------GAGLSGGQAQRLAL 467
Query: 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSL 647
AR +LDE T+ + + E+ ++ + + + I+HR A D ++ L
Sbjct: 468 ARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVL 527
Query: 648 D 648
D
Sbjct: 528 D 528
|
Length = 559 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 2e-20
Identities = 65/234 (27%), Positives = 102/234 (43%), Gaps = 45/234 (19%)
Query: 445 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
IE + G V+ ++L +E G + I GP+GSGKS+L +LGGL SG
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 502 IAKPGV----------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGG 550
+ G + + I +V Q L+ LT+ + VE PL G
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFN---------LLPDLTALENVELPLLLAG 111
Query: 551 MV---------ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
+ ELL+ V L L+ YP ELS G+QQR+ +AR + PK +
Sbjct: 112 VPKKERRERAEELLERVGLGDRLNHYP--------SELSGGQQQRVAIARALANDPKIIL 163
Query: 602 LDECTSAVTTDMEER----FCAKVRAMGTSCITISHRPALVAFHDVVLSL-DGE 650
DE T + ++ + + GT+ + ++H P L + D ++ L DG+
Sbjct: 164 ADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGK 217
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 5e-20
Identities = 62/200 (31%), Positives = 90/200 (45%), Gaps = 23/200 (11%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516
N L + G + I G +GSGKS+L ++L G W G I GV L + I
Sbjct: 356 NFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415
Query: 517 YVPQRPYTAVGTLRD--QLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 574
+ QR + GTLRD +L P SD+E + L+ V LE LL P+
Sbjct: 416 VLTQRVHLFSGTLRDNLRLANPDASDEE--------LWAALQQVGLEKLL-ESAPDGLNT 466
Query: 575 WGDE----LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSC 628
W E LS GE++RL +AR H +LDE T + E + A + G +
Sbjct: 467 WLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTL 526
Query: 629 ITISHRPALVAFHDVVLSLD 648
+ ++HR + D ++ LD
Sbjct: 527 LMVTHRLRGLERMDRIIVLD 546
|
Length = 573 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 6e-20
Identities = 69/218 (31%), Positives = 106/218 (48%), Gaps = 20/218 (9%)
Query: 445 IEFSGVKVVTP--TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
IEF V P L +N++L + PG + I G GSGKS+L ++L GL+ G +
Sbjct: 464 IEFRNVSFAYPGQETPAL-DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV 522
Query: 503 AKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEV-EPLTHGGMVE 553
GV +DL + I YVPQ P GTLRD + P D+E+ G+ E
Sbjct: 523 LLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTE 582
Query: 554 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
++ LD E+ G LS G++Q + +AR P +LDE TSA+
Sbjct: 583 FVRR--HPDGLDMQIGER----GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636
Query: 614 EERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
EERF +++ G + + ++HR +L+ D ++ +D
Sbjct: 637 EERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDN 674
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 6e-20
Identities = 63/214 (29%), Positives = 94/214 (43%), Gaps = 36/214 (16%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEI 515
G+ ++E+++ +V+PG L I GPNG+GKS+L + + GL SG I G K I
Sbjct: 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI 70
Query: 516 FYVPQR-------PYTA--------VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL 560
YVPQR P + G +V+ E L+ V L
Sbjct: 71 GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVD--------EALERVGL 122
Query: 561 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF--- 617
L DR +I ELS G+QQR+ +AR P +LDE + V +E
Sbjct: 123 SELADR-----QI---GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYEL 174
Query: 618 CAKVRAMGTSCITISHRPALV-AFHDVVLSLDGE 650
++R G + + ++H LV + D VL L+
Sbjct: 175 LRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 1e-19
Identities = 69/220 (31%), Positives = 98/220 (44%), Gaps = 49/220 (22%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI--------AKPGVGSDLN 512
V++++ + G L + G +GSGKS+L R+L GL P SG I G L
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 513 KEIFYVPQRPYTA---VGTLRDQLIYPLTSDQEVEPLTHGG-----MVELLKNVDL-EYL 563
+ I V Q PY++ T+ D L PL + G + ELL+ V L
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEPL----RIHGGGSGAERRARVAELLELVGLPPEF 422
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTT---------D 612
LDRYP ELS G++QR+ +AR +PK ILDE SA V+ D
Sbjct: 423 LDRYP--------HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD 474
Query: 613 MEERFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGE 650
++E G + + ISH A+V + V + DG
Sbjct: 475 LQEEL-------GLTYLFISHDLAVVRYIADRVAVMYDGR 507
|
Length = 539 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 1e-19
Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 44/225 (19%)
Query: 445 IEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
+E + V PTG +++++ ++ G L + G +GSGKS+L R + GL SG
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 502 I---------AKPGVGSDLNKEIFYVPQRPYTAVG---TLRDQLIYPLTS--DQEVEPLT 547
I + KEI V Q P +++ T+ +Q+ PL +
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR 121
Query: 548 HGGMVELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
++ LL V L E +L+RYP ELS G++QR+ +AR PK I DE T
Sbjct: 122 KEAVLLLLVGVGLPEEVLNRYP--------HELSGGQRQRVAIARALALNPKLLIADEPT 173
Query: 607 SA--VTT---------DMEERFCAKVRAMGTSCITISHRPALVAF 640
SA V+ ++E G + + I+H +VA
Sbjct: 174 SALDVSVQAQILDLLKKLQEEL-------GLTLLFITHDLGVVAK 211
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 2e-19
Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 45/232 (19%)
Query: 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI- 502
IE + V+ ++E+++L VE G + GPNG+GKS+L + + GL SG I
Sbjct: 4 MIEVENL-TVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 503 --AKPGVGSDLNKEIFYVPQR------------------PYTAVGTLRDQLIYPLTSDQE 542
KP I YVPQ+ Y G R ++
Sbjct: 63 IFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR---RLNKKDKEK 119
Query: 543 VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602
V+ E L+ V +E L DR +I ELS G++QR+ +AR P +L
Sbjct: 120 VD--------EALERVGMEDLRDR-----QI---GELSGGQKQRVLLARALAQNPDLLLL 163
Query: 603 DECTSAVTTDMEERFCA---KVRAMGTSCITISHRPALV-AFHDVVLSLDGE 650
DE + V ++ ++R G + + ++H LV A+ D V+ L+
Sbjct: 164 DEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 2e-19
Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 38/215 (17%)
Query: 446 EFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
E + P G ++++L ++ G +LI GPNGSGKS+L R+L GL SG +
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 505 PGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGM------ 551
G +L +++ V Q P DQ P T ++EV L + G+
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNP-------DDQFFGP-TVEEEVAFGLENLGLPEEEIE 112
Query: 552 ---VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
E L+ V LE L DR P LS G++QR+ +A + P +LDE T+
Sbjct: 113 ERVEEALELVGLEGLRDRSP--------FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAG 164
Query: 609 V----TTDMEERFCAKVRAMGTSCITISHRPALVA 639
+ ++ E K++A G + I ++H L+
Sbjct: 165 LDPAGRRELLELL-KKLKAEGKTIIIVTHDLDLLL 198
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 1e-18
Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 19/162 (11%)
Query: 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKE 514
++ N++L V G + ITGP+G GKS+L +++ L SG + G S L E
Sbjct: 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPE 73
Query: 515 IF-----YVPQRPYTAVGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNVDL-EYLLDRY 567
+ Y Q P T+ D LI+P ++ + ++LL L + +L
Sbjct: 74 AYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDR---AAALDLLARFALPDSILT-- 128
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
K I ELS GE+QR+ + R PK +LDE TSA+
Sbjct: 129 ---KNI---TELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164
|
Length = 223 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 1e-18
Identities = 64/206 (31%), Positives = 94/206 (45%), Gaps = 45/206 (21%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------AKPGVGSDLN 512
+ N++L++E G L I G +GSGKS+L R+L GL SG I A
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81
Query: 513 KEIFYVPQRPYTAVGTLR--DQLIYPLTSDQEVEPLTHGGM-------VELLKNVDL-EY 562
+ + V Q PY+++ R +++ EPL G+ ELL V L
Sbjct: 82 RPVQMVFQDPYSSLNPRRTVGRILS--------EPLRPHGLSKSQQRIAELLDQVGLPPS 133
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV- 621
LDR P ELS G++QR+ +AR +PK ILDE TSA+ ++ A++
Sbjct: 134 FLDRRP--------HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ----AQIL 181
Query: 622 -------RAMGTSCITISHRPALVAF 640
+ G + + ISH ALV
Sbjct: 182 NLLLELKKERGLTYLFISHDLALVEH 207
|
Length = 252 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 43/238 (18%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D 510
G ++++L+ + G I GPNGSGKS+L + L GL SG + G +
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE 73
Query: 511 LNKEIFYVPQRPYTAVG-TLRD---------QLIYPLTSDQEVEPLTHGGMVELLKNVDL 560
L K++ YVPQ P G T+ + ++ S ++ E + E L+ + L
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE-----IVEEALELLGL 128
Query: 561 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME------ 614
E+L DR DELS GE+QR+ +AR + +LDE TS + D+
Sbjct: 129 EHLADRP-------V-DELSGGERQRVLIARALAQETPILLLDEPTSHL--DIAHQIEVL 178
Query: 615 ERFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGEGEWRVHDKRDGSSVVTKSGI 670
E R G + + + H L A ++L DG ++ + V+T+ +
Sbjct: 179 ELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDG----KIVAQGTPEEVLTEENL 232
|
Length = 258 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 3e-18
Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 20/219 (9%)
Query: 445 IEFSGVKVVTPTGN-VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
+ V +V P G + ++ ++ G L I GP+GSGKS+L R++ G+WP SG +
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVEL 554
G K I Y+PQ GT+ + + ++ +E G+ EL
Sbjct: 377 LDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHEL 436
Query: 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+ + Y D G LS G++QR+ +AR Y PK +LDE S + + E
Sbjct: 437 ILRLPDGY--DTVIGPG----GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGE 490
Query: 615 ERFCA---KVRAMGTSCITISHRPALVAFHDVVLSL-DG 649
+ ++A G + + I+HRP+L+ D +L L DG
Sbjct: 491 QALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 4e-18
Identities = 61/265 (23%), Positives = 109/265 (41%), Gaps = 33/265 (12%)
Query: 388 SLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGS----RNYFSEAN 443
+ F++ L ++++L R+ A+RI E+ ++ P GS
Sbjct: 282 AAFEAFAALPAAAQQLTRVRAAAERIVEV--------LDAAGPVAEGSAPAAGAVGLGKP 333
Query: 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
+E + P +++ ++L + PG + I GP+GSGKS+L L GL + G +
Sbjct: 334 TLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVT 393
Query: 504 KPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELL 555
GV ++ + + Q + T+R+ L P +D+E+ L
Sbjct: 394 LDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELW--------AAL 445
Query: 556 KNVDLEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612
+ V L L P + G+ LS GE+QRL +AR +LDE T + +
Sbjct: 446 ERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAE 505
Query: 613 MEERFCAKVRAM--GTSCITISHRP 635
+ + A G + + I+H
Sbjct: 506 TADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 7e-18
Identities = 59/235 (25%), Positives = 91/235 (38%), Gaps = 45/235 (19%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA- 503
IE V V G ++ +L+ +V PG + I GPNG+GK++L +L G P SG +
Sbjct: 32 IELKNV-SVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTL 90
Query: 504 ------KPGVGSDLNKEIFYVP------QRPYTAVGTLRDQL---------IYPLTSDQE 542
K +L K I V R V RD + IY E
Sbjct: 91 LGRRFGKGETIFELRKRIGLVSSELHERFRVRETV---RDVVLSGFFASIGIYQEDLTAE 147
Query: 543 VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602
LL+ + ++L DR +G LS GEQ+R+ +AR P+ IL
Sbjct: 148 DL----AAAQWLLELLGAKHLADRP-------FGS-LSQGEQRRVLIARALVKDPELLIL 195
Query: 603 DECTSAVTTDMEERFCAKV-----RAMGTSCITISHRP--ALVAFHDVVLSLDGE 650
DE + E+ ++ + + ++H F +L +GE
Sbjct: 196 DEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 8e-18
Identities = 66/228 (28%), Positives = 103/228 (45%), Gaps = 32/228 (14%)
Query: 445 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
IE V + G VE ++ L++E G + I GP+GSGKS+L +LGGL SG
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 502 IAKPGV-GSDLN---------KEIFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLT 547
+ G + L+ K+I +V Q P T+ + + PL +
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD---LTVLENVELPLLIAGKSAGRR 118
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
ELL+ + LE L + P ELS G+QQR+ +AR + PK + DE T
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPS-------ELSGGQQQRVAIARALINNPKIILADEPTG 171
Query: 608 AVTTDMEERFCAKVRAM----GTSCITISHRPALVAFHDVVLSL-DGE 650
+ + + +R + G + I ++H P L + D V+ L DG+
Sbjct: 172 NLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 1e-17
Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IE + ++ ++ +VEPG + GPNG+GK++L ++L GL SG I
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64
Query: 505 PGVGSDLNKE-------IFYVPQRPY-----TAVGTLRDQL-IYPLTSDQEVEPLTHGGM 551
G D+ KE I YVPQ P T L +Y L+ ++ E +
Sbjct: 65 LGY--DVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIE---- 118
Query: 552 VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
ELL+ LE ++ LS G +QRL +A H P+ ILDE TS +
Sbjct: 119 -ELLELFGLEDKANKKV--------RTLSGGMKQRLSIALALLHDPELLILDEPTSGL 167
|
Length = 293 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 28/195 (14%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSDLNK 513
G ++++L+L + G + +TG NG+GK++L ++L GL SG I KP + K
Sbjct: 12 GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRK 71
Query: 514 EIFYVPQRPYTAVG--TLRDQLIY--PLTSD--QEVEPLTHGGMVELLKNVDLEYLLDRY 567
I YV Q + ++R++L+ ++ E +LK++DL L +R+
Sbjct: 72 SIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAE--------TVLKDLDLYALKERH 123
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AM 624
P LS G++QRL +A I DE TS + ER +R A
Sbjct: 124 P--------LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175
Query: 625 GTSCITISHRPALVA 639
G + I I+H +A
Sbjct: 176 GKAVIVITHDYEFLA 190
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 4e-17
Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 30/222 (13%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-- 502
IE + P +++++L++E G +L+ GPNGSGKS+L ++L GL SG +
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63
Query: 503 -----AKPGVGSDLNKEIFYVPQRPYT--AVGTLRDQLIYPLT----SDQEVEPLTHGGM 551
+ +L +++ V Q P T+ D++ + L +E+E
Sbjct: 64 DGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA--- 120
Query: 552 VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTT 611
E L+ V LE LLDR P LS G++QR+ +A + P+ +LDE T+ +
Sbjct: 121 -EALELVGLEELLDRPP--------FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP 171
Query: 612 DMEERFCAKVRAM----GTSCITISHRPALVAFH-DVVLSLD 648
++ + G + I ++H LV + D V+ LD
Sbjct: 172 KGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLD 213
|
Length = 235 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 78.6 bits (195), Expect = 2e-16
Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 55/195 (28%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSD 510
G ++++L+L +E G + I GPNG+GKS+L + L GL SG I G +
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE 70
Query: 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
L ++I YVPQ L+ + L +L DR
Sbjct: 71 LARKIAYVPQ---------------------------------ALELLGLAHLADRPF-- 95
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME------ERFCAKVRAM 624
+ELS GE+QR+ +AR +P +LDE TS + D+ E R
Sbjct: 96 ------NELSGGERQRVLLARALAQEPPILLLDEPTSHL--DIAHQIELLELLRRLARER 147
Query: 625 GTSCITISHRPALVA 639
G + + + H L A
Sbjct: 148 GKTVVMVLHDLNLAA 162
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 2e-16
Identities = 73/261 (27%), Positives = 114/261 (43%), Gaps = 44/261 (16%)
Query: 390 FQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSG 449
FQ LG I+S A RI+E+ E++ S + + +
Sbjct: 301 FQHLGQ-VIAS---------ARRINEITEQKPEVTFPTTSTAAADQVS-------LTLNN 343
Query: 450 VKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 508
V P V + L+L+++ G + + G G GKS+L ++L W G I G
Sbjct: 344 VSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP 403
Query: 509 ------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKNVDL 560
+ L + I V QR + TLRD L+ P SD+ ++E+L+ V L
Sbjct: 404 IADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA--------LIEVLQQVGL 455
Query: 561 EYLLDRYPPEKEIN-W----GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
E LL+ +K +N W G +LS GEQ+RLG+AR H +LDE T + + E
Sbjct: 456 EKLLED---DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETER 512
Query: 616 RFCAKVR--AMGTSCITISHR 634
+ + A + + I+HR
Sbjct: 513 QILELLAEHAQNKTVLMITHR 533
|
Length = 574 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 69/215 (32%), Positives = 103/215 (47%), Gaps = 17/215 (7%)
Query: 445 IEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
IEF V + P +++N++ ++PG + I G GSGKSSL L L L SG I
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQL-IYPLTSDQEV-EPLTHGGMVELL 555
GV DL I +PQ P GT+R L + SD+E+ + L G+ E +
Sbjct: 63 IDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFV 122
Query: 556 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
++ L LD G+ LS+G++Q L +AR K K +LDE T++V + +
Sbjct: 123 ES--LPGGLD----TVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 616 RFCAKVRAMGTSC--ITISHRPALVAFHDVVLSLD 648
+R C +TI+HR + D +L LD
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLD 211
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 7e-16
Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 18/207 (8%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------ 508
+++ ++ ++ G L I GP+GSGKS+L R+L G+WP SG + G
Sbjct: 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDR 405
Query: 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568
L + I Y+PQ GT+ + I + + E ++E + + L+ R P
Sbjct: 406 EQLGRHIGYLPQDVELFDGTIA-ENIARFGEEADPE-----KVIEAARLAGVHELILRLP 459
Query: 569 PEKEINWGDE---LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME---ERFCAKVR 622
+ G+ LS G++QR+ +AR Y P +LDE S + ++ E +
Sbjct: 460 QGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK 519
Query: 623 AMGTSCITISHRPALVAFHDVVLSLDG 649
A G + + I+HRP+ +A D +L L
Sbjct: 520 ARGGTVVVIAHRPSALASVDKILVLQD 546
|
Length = 580 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 7e-16
Identities = 66/203 (32%), Positives = 100/203 (49%), Gaps = 26/203 (12%)
Query: 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
N IEF V + G +++++++K E G+ I GP+G+GKS+L +++ L G I
Sbjct: 2 NEIEFKEVSY-SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 503 AKPGVGS------DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556
GV DL ++I V Q+P+ GT++D + Y G M++ K
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEY-------------GPMLKGEK 107
Query: 557 NVDLEYLLDRYPPEKEINWGD--ELSLGEQQRLGMARLFYHKPKFAILDECTSAV----T 610
NVD+EY L KE D LS GE QR+ +AR + P+ +LDE TSA+ T
Sbjct: 108 NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTST 167
Query: 611 TDMEERFCAKVRAMGTSCITISH 633
+EE M + I I+H
Sbjct: 168 EIIEELIVKLKNKMNLTVIWITH 190
|
Length = 241 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 2e-15
Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 26/210 (12%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSD- 510
P VL ++++ + PG + GP+GSGKS++ +L + G + KP +
Sbjct: 25 PDTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEH 83
Query: 511 --LNKEIFYVPQRPYTAVGTLRDQLIYPLT--SDQEVEPL-----THGGMVELLKNVDLE 561
L+ ++ V Q P +L+D + Y L S + V+ H + EL D E
Sbjct: 84 KYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTE 143
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV 621
EK G +LS G++QR+ +AR P+ ILDE TSA+ + E++ +
Sbjct: 144 V------GEK----GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQAL 193
Query: 622 RA--MGTSCITISHRPALVAFHDVVLSLDG 649
+ + I+HR + V D +L LDG
Sbjct: 194 YDWPERRTVLVIAHRLSTVERADQILVLDG 223
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 3e-15
Identities = 71/233 (30%), Positives = 99/233 (42%), Gaps = 57/233 (24%)
Query: 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----L 497
+E + V T V +++ +VEPG L I G +GSGKS+L L GL P +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 498 VSGHIAKPGVG-SDLN---------KEIFYVPQRPYTA---VGTLRDQLIYPLTSDQEVE 544
SG + G L+ K I + Q P T+ V T+ DQ+ E
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR-------EA- 117
Query: 545 PLTHGGM---------VELLKNVDLEY--LLDRYPPEKEINWGDELSLGEQQRLGMARLF 593
HG VELL+ V L DRYP +LS G +QR+ +A
Sbjct: 118 LRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPH--------QLSGGMRQRVMIAMAL 169
Query: 594 YHKPKFAILDECTSA--VTT-----DMEERFCAKVRAMGTSCITISHRPALVA 639
KPK I DE T+A VTT D+ + R +G + + I+H +VA
Sbjct: 170 ALKPKLLIADEPTTALDVTTQAQILDLLKDLQ---RELGMAVLFITHDLGVVA 219
|
Length = 539 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 4e-15
Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 43/212 (20%)
Query: 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEI 515
+ ++++ L+V G + I GP GSGKSSL L G +SG ++ + I
Sbjct: 16 ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVS-------VPGSI 68
Query: 516 FYVPQRPYTAVGTLRDQLIYPLTSDQE--------------VEPLTHGGMVELLKNVDLE 561
YV Q P+ GT+R+ +++ D+E +E L G + E+
Sbjct: 69 AYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEI------- 121
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV 621
EK IN LS G++QR+ +AR Y +LD+ SAV +
Sbjct: 122 -------GEKGIN----LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 622 ----RAMGTSCITISHRPALVAFHDVVLSLDG 649
+ I ++H+ L+ D ++ LD
Sbjct: 171 ILGLLLNNKTRILVTHQLQLLPHADQIVVLDN 202
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 4e-15
Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 21/217 (9%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V G ++++++ + G + I GP+GSGKS++ R+L + + SG I
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 505 PGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLK 556
G L + I VPQ T+ + Y P +D+EV E K
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVI--------EAAK 112
Query: 557 NVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
+ + R+P + G+ +LS GE+QR+ +AR P +LDE TSA+ T
Sbjct: 113 AAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172
Query: 614 EERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
E A +R + G + I I+HR + + D ++ L
Sbjct: 173 EREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLK 209
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 19/203 (9%)
Query: 445 IEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
IEF V P+ +++ L+L + PG + + G +G GKS++ +L + SG I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 503 AKPGVG-SDLN-----KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556
GV DLN +I V Q P GT+ + + Y + E + E K
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEE------VEEAAK 114
Query: 557 NVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
++ + P + G+ +LS G++QR+ +AR PK +LDE TSA+ +
Sbjct: 115 KANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174
Query: 614 EERFCAKV-RAM-GTSCITISHR 634
E+ + RAM G + I I+HR
Sbjct: 175 EKLVQEALDRAMKGRTTIVIAHR 197
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 35/198 (17%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
+++L+L VEPG L + GP+G GK++L R++ GL SG I G +++
Sbjct: 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG------RDVT 65
Query: 517 YVP--QRPYTAVG------------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 562
VP +R +G T+ + + + L + + ELL+ V LE
Sbjct: 66 GVPPERRN---IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG 122
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622
LL+RYP ELS G+QQR+ +AR +P +LDE SA+ + E +++
Sbjct: 123 LLNRYP--------HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELK 174
Query: 623 AM----GTSCITISHRPA 636
+ G + I ++H
Sbjct: 175 ELQRELGITTIYVTHDQE 192
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-14
Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 18/217 (8%)
Query: 445 IEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I F V+ P G V+++N++L+++PG + I G +GSGKS+L +++ + +G +
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQ--LIYPLTSDQEVEPLTH-GGMVEL 554
G + L +++ V Q ++RD L P S + V G +
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+ + Y D E+ G LS G++QR+ +AR H P+ I DE TSA+ + E
Sbjct: 121 ISELPEGY--DTIVGEQ----GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 615 ERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
+ + G + I I+HR + V D ++ ++
Sbjct: 175 HAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEK 211
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 28/177 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G VL L+ + G L++TGPNGSGK++L R++ GL P +G I G D
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD--- 70
Query: 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPL--------THGGMV-ELLKNVDLEYLLDRY 567
Y +G R+ + LT E L + L+ V L L
Sbjct: 71 VAEACHY--LGH-RNAMKPALTV---AENLEFWAAFLGGEELDIAAALEAVGLAPLAHL- 123
Query: 568 PPEKEINWGDELSLGEQQRLGMARLF-YHKPKFAILDECTSAVTTDMEERFCAKVRA 623
P LS G+++R+ +ARL ++P + ILDE T+A+ F +RA
Sbjct: 124 -PFG------YLSAGQKRRVALARLLVSNRPIW-ILDEPTAALDAAAVALFAELIRA 172
|
Length = 207 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 4e-14
Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 33/175 (18%)
Query: 445 IEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
+E V G +E+++L VE G + + GP+G GKS+L R++ GL SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 502 IA---KPGVGSDLNKEIFYVPQRPY-----TAVGTLRDQLIYPLT----SDQEVEPLTHG 549
+ +P G + YV Q+ T D + L E
Sbjct: 61 VLVDGEPVTGP--GPDRGYVFQQDALLPWLTV----LDNVALGLELQGVPKAEARERAE- 113
Query: 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
ELL+ V L + YP +LS G +QR+ +AR P +LDE
Sbjct: 114 ---ELLELVGLSGFENAYP--------HQLSGGMRQRVALARALAVDPDVLLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 7e-14
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 35/194 (18%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VS 499
IE + V + L ++++L + G + GP+G GKS+L R+L L L
Sbjct: 1 IELRDLNVYYGDKHAL-KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59
Query: 500 GHI--------AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT-----SDQEVEPL 546
G + +L + + V Q+P G++ D + Y L +E++
Sbjct: 60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDER 119
Query: 547 THGGMVELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605
+ E L+ L + + DR LS G+QQRL +AR ++P+ +LDE
Sbjct: 120 ----VEEALRKAALWDEVKDRLH-------ALGLSGGQQQRLCLARALANEPEVLLLDEP 168
Query: 606 TSAV----TTDMEE 615
TSA+ T +EE
Sbjct: 169 TSALDPISTAKIEE 182
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 1e-13
Identities = 72/269 (26%), Positives = 117/269 (43%), Gaps = 38/269 (14%)
Query: 408 GYADRIHELMVISRELSIEDKSPQ--RNGSRNYFSEANYIEFSGVKVVTPT-GNVLV-EN 463
G ++++ E + D+ P G+ + IEF V P +V V +
Sbjct: 449 GASEKVFEYL---------DRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKG 499
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSD---LNKEIFY 517
LT + PG + + GP+GSGKS++ +L L+ G + P V D L++++
Sbjct: 500 LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVAL 559
Query: 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLT-------HGGMVELLKNVDLEYLLDRYPPE 570
V Q P G++R+ + Y LT + E + H ++E D E E
Sbjct: 560 VGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEV------GE 613
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCIT 630
K G +LS G++QR+ +AR KP+ ILDE TSA+ + E+ + +
Sbjct: 614 K----GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLL 669
Query: 631 ISHRPALV--AFHDVVLSLDGEGEWRVHD 657
I+HR + V A +VL E H
Sbjct: 670 IAHRLSTVERADQILVLKKGSVVEMGTHK 698
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 55/188 (29%), Positives = 81/188 (43%), Gaps = 38/188 (20%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPG-SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
++ + L ++L + PG LL GPNG+GK++L R+L L P SG I
Sbjct: 1 LQLENLTKRYGKKRALD-GVSLTLGPGMYGLL--GPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 504 KPGV-----GSDLNKEIFYVPQ--RPYTAVGTLRDQLIY--------PLTSDQEVEPLTH 548
G L + I Y+PQ Y T+R+ L Y V+
Sbjct: 58 IDGQDVLKQPQKLRRRIGYLPQEFGVYPNF-TVREFLDYIAWLKGIPSKEVKARVD---- 112
Query: 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
E+L+ V+L DR +K+I LS G ++R+G+A+ P I+DE T
Sbjct: 113 ----EVLELVNLG---DRA--KKKIG---SLSGGMRRRVGIAQALVGDPSILIVDEPT-- 158
Query: 609 VTTDMEER 616
D EER
Sbjct: 159 AGLDPEER 166
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-13
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 29/212 (13%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-- 502
I F V P G + +++ + G + +TGP+G+GKS+L +++ G G I
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61
Query: 503 AKPGVGSDLNKEIFYVPQRPYTAVGTL-RD-QLIYPLTSDQEVE-PLTHGGM-------- 551
+ +EI ++ ++ +G + +D +L+ T + V PL G
Sbjct: 62 NGHDLSRLKGREIPFLRRQ----IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRR 117
Query: 552 -VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
E+L V L++ P +LS GEQQR+ +AR ++P + DE T +
Sbjct: 118 VSEVLDLVGLKHKARALP--------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD 169
Query: 611 TDMEE---RFCAKVRAMGTSCITISHRPALVA 639
D+ R ++ +GT+ + +H LV
Sbjct: 170 PDLSWEIMRLFEEINRLGTTVLMATHDLELVN 201
|
Length = 223 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 34/224 (15%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V P G + +++L + G L +TGP+G+GK++L ++L G G +
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61
Query: 505 PGVGSDLN----KEIFYVPQRPYTAVGT-------LRDQLIY-----PLTSDQEVEPLTH 548
G D+N +++ + +R +G L D+ +Y PL + E
Sbjct: 62 --AGEDVNRLRGRQLPLLRRR----IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQ 115
Query: 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
+ L+ V LE+ D +P ++LS GEQQR+ +AR + P + DE T
Sbjct: 116 RRVGAALRQVGLEHKADAFP--------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGN 167
Query: 609 VTTDMEERFCA---KVRAMGTSCITISHRPALV-AFHDVVLSLD 648
+ D+ ER ++ GT+ I +H +LV V+ LD
Sbjct: 168 LDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILD 211
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 2e-13
Identities = 112/561 (19%), Positives = 200/561 (35%), Gaps = 134/561 (23%)
Query: 818 IRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSG 877
I HL RL L R +HLL+ S++ +S+ +LE++ L+G
Sbjct: 218 IAHLGKRLDLELSGRFFRHLLRL---PLSYF-----EKRSVGEIISRVRELEQIREFLTG 269
Query: 878 LVTGMVKPSVDIL----------WFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFG 927
+ ++ +D+L ++W++ + +A + +L+ L F P
Sbjct: 270 SILTLI---IDLLFALIFLAVMFLYSWKLTLIV----LAAIPLNVLITLIF----QPLLR 318
Query: 928 DLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAM-IESRFRELLEHSLL-LLKKK 985
T + + + V G KA+ E RFR ++ L +
Sbjct: 319 RKTRKLIEESA---------EQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIG 369
Query: 986 WLFGILDDFV--TKQLPHNVTWGLSLLY-----AMEHKGDRALVSTQGELAHALRFLASV 1038
+ L + K L ++ + +L+ +E + ++ G+L A LA
Sbjct: 370 FKTEKLALILNTIKSLLQQLS-SVLILWFGAILVLEGE-----LTL-GQLV-AFNMLAGY 421
Query: 1039 VSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQD 1098
+ F + + R L ++LD + E + H Q
Sbjct: 422 FISPITRLSQLWT---DFQQAKVALER---LGDILDTPP--EQEGDKTLIHLPKL---QG 470
Query: 1099 SISFSKLDI-ITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL 1157
I F + P + L+ EI PG+ + + G +GSGKS++ ++L GL+ G +
Sbjct: 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI 530
Query: 1158 T---KPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQII--YPLSREEAELRALKLHGKG 1212
ID + + YV Q P+ G++R+ I P + +E + A +L G
Sbjct: 531 LLDGVDLNDIDLASLRRQ-VGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAG-- 587
Query: 1213 EKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVL 1272
+++ + G Y E G AN LS G++QRL +
Sbjct: 588 ---------AHEFIENLPMG----YDTPVGEGG--AN------LSGGQRQRLAL------ 620
Query: 1273 IQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYR 1332
AR KPK +LDE T+A + E + +
Sbjct: 621 ------------------------------ARALLSKPKILLLDEATSALDPETEAIILQ 650
Query: 1333 --LAKDMGITFVTSSQRPALI 1351
L G T + + R + I
Sbjct: 651 NLLQILQGRTVIIIAHRLSTI 671
|
Length = 709 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-13
Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 445 IEFSGVKVVTPTGN----VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500
IE V +++++L++ G I G +G+GKS+L R++ L SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 501 HIAKPGVGSD---------LNKEIFYVPQRP-YTAVGTLRDQLIYPL----TSDQEVEPL 546
+ G L ++I + Q + T+ + + +PL E++
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
ELL+ V L DRYP +LS G++QR+ +AR + PK + DE T
Sbjct: 122 VA----ELLELVGLSDKADRYP--------AQLSGGQKQRVAIARALANNPKILLCDEAT 169
Query: 607 SA 608
SA
Sbjct: 170 SA 171
|
Length = 339 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 31/192 (16%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD-----L 511
G L L+ + G L +TGPNGSGK++L R+L GL P ++G + G D +
Sbjct: 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSI 71
Query: 512 NKEIFYVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
+ + Y+ P + + LR + SD++VE E L V L DR
Sbjct: 72 ARGLLYLGHAPGIKTTLSVLENLR--FWHADHSDEQVE--------EALARVGLNGFEDR 121
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---A 623
+LS G+Q+R+ +ARL ILDE T+A+ RF + A
Sbjct: 122 P--------VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA 173
Query: 624 MGTSCITISHRP 635
G + +H+
Sbjct: 174 RGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-13
Identities = 129/590 (21%), Positives = 232/590 (39%), Gaps = 89/590 (15%)
Query: 95 LLSEMGKMGARDLLALVGIVVLRTALSNRLAKV-----QGFLFR-AAFLRRVPLFFQLIS 148
L S + A +LA V ++++ S A + GF R + L VPL
Sbjct: 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVV---- 60
Query: 149 ENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRIT-HPE 207
I L L S Y+ +S K+V I R FE + +S D + T
Sbjct: 61 --IGLAVLRGICSFVSTYLLSWVS---NKVVRD-IRVRMFEKLLGLPVSFFDRQPTGTLL 114
Query: 208 QRLASDVPRFCSELSE----LVQDDLTAVTDGLL-----YTWRLCSYASPKYVFWILAYV 258
R+ D + S ++ LV++ LT + GL Y+W+L + ++ V
Sbjct: 115 SRITFDSEQVASAATDAFIVLVRETLTVI--GLFIVLLYYSWQL------TLIVVVMLPV 166
Query: 259 LGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFK 318
L +MR S ++ + Q G+ + + +GG+ E ++F
Sbjct: 167 LSI--LMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYE----TRRFD 220
Query: 319 ALTRH-----MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRA 373
A++ M++ + Q L+ L +AV+L I F A + T G
Sbjct: 221 AVSNRNRRLAMKMTSAGSISSPITQ--LIASLA--LAVVLFIALFQAQA---GSLTAG-- 271
Query: 374 KMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRN 433
+ + +I+L + L +L+ + + R A+ + L+ E ++ +R
Sbjct: 272 ----DFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERA 327
Query: 434 GSRNYFSEANYIEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLG 492
+EF V P +++++L +EPG + + G +GSGKS+L ++
Sbjct: 328 RGD--------VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIP 379
Query: 493 GLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLT---SDQEV 543
+ SG I G + L +++ V Q T+ + + Y T E+
Sbjct: 380 RFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEI 439
Query: 544 EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLFYHKPKFA 600
E L + +D+ P + G+ LS G++QRL +AR
Sbjct: 440 E--------RALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPIL 491
Query: 601 ILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
ILDE TSA+ + E A + + G + + I+HR + + D ++ +D
Sbjct: 492 ILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMD 541
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-13
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 22/204 (10%)
Query: 445 IEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
+EF V G ++ +++L + G + + GP+GSGKS+L ++ + + SG I
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELL 555
G + L ++I V Q + T+ + + Y P + +EVE E
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVE--------EAA 112
Query: 556 KNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612
+ + + P + G+ +LS G++QR+ +AR P ILDE TSA+ T+
Sbjct: 113 RAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTE 172
Query: 613 MEERFCAKVRAM--GTSCITISHR 634
E A + + + I+HR
Sbjct: 173 SERLVQAALERLMKNRTTFVIAHR 196
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 3e-13
Identities = 65/228 (28%), Positives = 92/228 (40%), Gaps = 46/228 (20%)
Query: 440 SEANYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW 495
N IE + G ++L + + L V+ G + I GP+GSGKS+L VL GL
Sbjct: 2 PAENIIEVHHLSKTVGQGEGELSIL-KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60
Query: 496 PLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRD----------QLIYPLTSDQEVE- 544
SG + +G L+ + A LR LI LT+ + V
Sbjct: 61 DPSSGEVRL--LGQPLH-------KLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL 111
Query: 545 PLTHGGMV---------ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595
PL G LL+ V L L YP +LS GEQQR+ +AR F
Sbjct: 112 PLELRGESSADSRAGAKALLEAVGLGKRLTHYP--------AQLSGGEQQRVALARAFAG 163
Query: 596 KPKFAILDECTSAVTTDMEERFC----AKVRAMGTSCITISHRPALVA 639
+P DE T + ++ A R GT+ + ++H P L A
Sbjct: 164 RPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAA 211
|
Length = 228 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 4e-13
Identities = 67/226 (29%), Positives = 94/226 (41%), Gaps = 52/226 (23%)
Query: 450 VKVVTPTGNV-LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV- 507
V T G V V+ ++ +++ G L I G +GSGKS L + + GL P + I +
Sbjct: 9 VSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL 68
Query: 508 --GSDLN------------KEIFYVPQRPYTA---VGTLRDQLIYPLTSDQEVEPLTHGG 550
G DL KEI + Q P T+ V T+ DQ+ L HG
Sbjct: 69 FDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVL--------RLHGK 120
Query: 551 M----------VELLKNVDL---EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597
+ELL+ V + E L YP ELS G +QR+ +A P
Sbjct: 121 GLSKKEAKERAIELLELVGIPDPERRLKSYP--------HELSGGMRQRVMIAMALALNP 172
Query: 598 KFAILDECTSA--VTT--DMEERFCAKVRAMGTSCITISHRPALVA 639
K I DE T+A VT + + R GT+ I I+H +VA
Sbjct: 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVA 218
|
Length = 316 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 6e-13
Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 19/166 (11%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+E GV VL E++ L VE G + I GP+G GKS+L R++ GL SG +
Sbjct: 4 LEIEGVSKSFGGVEVL-EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62
Query: 505 PG-VGSDLNKEIFYVPQRPY-----TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558
G + +I YV Q T D + L + + ELL+ V
Sbjct: 63 DGRPVTGPGPDIGYVFQEDALLPWLTV----LDNVALGLELRGKSKAEARERAKELLELV 118
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
L D+YP +LS G +QR+ +AR +PK +LDE
Sbjct: 119 GLAGFEDKYP--------HQLSGGMRQRVAIARALATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 7e-13
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 32/197 (16%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 514
++N++ KV+ G + I G G+GKS+L L G I G+ DL
Sbjct: 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83
Query: 515 IFYVPQRPYTAVGTLRDQL-IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 573
+ +PQ P GT+R L + SD+E+ Y +
Sbjct: 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEI-----------------------YGALRVS 120
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITI 631
G LS G++Q L +AR +P+ +LDE T+++ + +R ++ +TI
Sbjct: 121 EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTI 180
Query: 632 SHRPALVAFHDVVLSLD 648
+HR + +D +L +D
Sbjct: 181 AHRLRTIIDYDKILVMD 197
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 7e-13
Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 20/264 (7%)
Query: 383 TSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEA 442
S++ S + + L L L G +R+ +++ + +E++ GS +
Sbjct: 416 QSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLS 475
Query: 443 NYIEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
Y+E + +P L+EN +L ++PG + + G +GSGKS++ +++ GL+ SG
Sbjct: 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535
Query: 502 IAKPGVG-SDLNKEIF-----YVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVE 553
I G+ ++ +E+ V Q + GT+RD L P D + +V
Sbjct: 536 ILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDAD--------LVR 587
Query: 554 LLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
K+ + ++ P + G LS G++QRL +AR P ILDE TSA+
Sbjct: 588 ACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALD 647
Query: 611 TDMEERFCAKVRAMGTSCITISHR 634
+ E+ +R G +CI ++HR
Sbjct: 648 PETEKIIDDNLRRRGCTCIIVAHR 671
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 7e-13
Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 38/211 (18%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+E V+ + VL +++ L +E G +++ GP+G GKS+L R++ GL SG I
Sbjct: 4 LELKNVRKSFGSFEVL-KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62
Query: 505 PG-VGSDLNKE---IFYVPQRPYTAV---GTLRDQLIYPLTS--------DQEVEPLTHG 549
G +DL E I V Q A+ T+ + + + L D+ V+
Sbjct: 63 DGRDVTDLPPEKRGIAMVFQNY--ALYPHMTVYENIAFGLKLRGVPKAEIDKRVK----- 115
Query: 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
E+ K + LE+LL+R P +LS G++QR+ +AR KPK +LDE S +
Sbjct: 116 ---EVAKLLGLEHLLNRKP--------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNL 164
Query: 610 ----TTDMEERFCAKVRAMGTSCITISHRPA 636
M +GT+ I ++H
Sbjct: 165 DAKLRVLMRSEIKKLHERLGTTTIYVTHDQV 195
|
Length = 338 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 8e-13
Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 55/183 (30%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-----GSDLNKEI 515
+++++L VE G + GPNG+GK++L +++ GL SG I G ++ + I
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRI 75
Query: 516 FYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINW 575
Y+P+ P L LT V E L
Sbjct: 76 GYLPEEPS---------LYENLT----VR----------------ENL------------ 94
Query: 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER-----FCAKVRAMGTSCIT 630
+LS G +QRL +A+ H P+ ILDE TS + D E R +++ G + +
Sbjct: 95 --KLSGGMKQRLALAQALLHDPELLILDEPTSGL--DPESRREFWELLRELKKEGKTILL 150
Query: 631 ISH 633
SH
Sbjct: 151 SSH 153
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 57/185 (30%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
V+ ++ ++ G L + G +G GKS+L R++ GL SG I
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI------------------ 70
Query: 521 RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL-EYLLDRYPPEKEINWGDEL 579
+ I L+ ++ E + +ELL+ V L E L RYP EL
Sbjct: 71 -------LFEGKDITKLSKEERRERV-----LELLEKVGLPEEFLYRYP--------HEL 110
Query: 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTT-----------DMEERFCAKVRAMGTSC 628
S G++QR+G+AR PK + DE SA+ D++E G +
Sbjct: 111 SGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL-------GLTY 163
Query: 629 ITISH 633
+ ISH
Sbjct: 164 LFISH 168
|
Length = 268 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-12
Identities = 112/564 (19%), Positives = 198/564 (35%), Gaps = 106/564 (18%)
Query: 800 LIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSID 859
L+ +++L + + L ++ R + + LL+ L SF+ +KS D
Sbjct: 58 LLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPL---SFFD----KAKSGD 110
Query: 860 ADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLG-- 917
R+T+D+E ++ +S ++ + + ++ + +L+ + + +L LL L
Sbjct: 111 LISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLS 170
Query: 918 -FLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLE 976
R + +L + E L + FG RE E EL
Sbjct: 171 LLARKSRKLSRRVREALGELNA---RLLESLSGIRV-IKAFGAEDRELKRFEEANEELRR 226
Query: 977 HSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLA 1036
+L + + L L ++ ++ L L + G L LA
Sbjct: 227 ANLRASRLEALLAPLMLLLS-----SLGTVLVLALG-------GFLVLSGSLTVGA--LA 272
Query: 1037 SVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDY 1096
+ + IL+L L L ELLD E+ ++
Sbjct: 273 AFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEE----PEVEDPPDPLKDT--- 325
Query: 1097 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS 1156
SI F + P +K + + ++F I PG+ + + GP+GSGKS++ ++L L+ SG
Sbjct: 326 IGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGE 385
Query: 1157 LT---KPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIY---PLSREEAELRALKLHG 1210
+ + I ++ I V Q P GT+R+ I + EE E ALKL
Sbjct: 386 ILIDGIDIRDISLDSLRK-RIGIVSQDPLLFSGTIRENIALGRPDATDEEIE-EALKL-- 441
Query: 1211 KGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMVSH 1269
N + + G+D + + LS G++QRL +
Sbjct: 442 --------ANAHE--------------FIANLPDGYDTIVGERGVNLSGGQRQRLAI--- 476
Query: 1270 LVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQ 1329
AR P ILDE T+A + E
Sbjct: 477 ---------------------------------ARALLRNPPILILDEATSALDTETEAL 503
Query: 1330 LYRLAKDM--GITFVTSSQRPALI 1351
+ K + G T + + R + I
Sbjct: 504 IQDALKKLLKGRTTLIIAHRLSTI 527
|
Length = 567 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-12
Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 37/213 (17%)
Query: 440 SEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499
+E V + V++++L ++ G + + GP+G GK++L R++ G S
Sbjct: 1 MPKPALEIRNVSK-SFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 500 GHIAKPGVGSDLNKEIFYVP--QRPYTAVG------------TLRDQLIYPLTSDQEVEP 545
G I G ++I VP +RP +G T+ + + + L ++++
Sbjct: 60 GEILLDG------EDITDVPPEKRP---IGMVFQSYALFPHMTVEENVAFGLKVRKKLKK 110
Query: 546 LTHGGMV-ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
V E L+ V LE DR P +LS G+QQR+ +AR +PK +LDE
Sbjct: 111 AEIKARVEEALELVGLEGFADRKP--------HQLSGGQQQRVALARALVPEPKVLLLDE 162
Query: 605 CTSA----VTTDMEERFCAKVRAMGTSCITISH 633
SA + M + R +G + + ++H
Sbjct: 163 PLSALDAKLREQMRKELKELQRELGITFVYVTH 195
|
Length = 352 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 2e-12
Identities = 53/195 (27%), Positives = 77/195 (39%), Gaps = 29/195 (14%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV--------- 507
G V + L + G +I G +GSGKS+ R+L L +G I G
Sbjct: 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVE 64
Query: 508 -GSDLNKEIFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 562
K+I V Q+ P+ T+ E +ELLK V LE
Sbjct: 65 LREVRRKKIGMVFQQFALFPHM---TILQNTSLGPELLGWPEQERKEKALELLKLVGLEE 121
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA----VTTDMEERFC 618
RYP DELS G QQR+G+AR +P ++DE SA + M++
Sbjct: 122 YEHRYP--------DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELK 173
Query: 619 AKVRAMGTSCITISH 633
+ + + I+H
Sbjct: 174 KLQATLQKTIVFITH 188
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 2e-12
Identities = 81/274 (29%), Positives = 125/274 (45%), Gaps = 32/274 (11%)
Query: 392 SLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVK 451
S+GTLS L R +G A+R+ EL+ E I+ + + E IEF V
Sbjct: 290 SIGTLSEVWGELQRAAGAAERLIELL--QAEPDIKAPAHPKTLPVPLRGE---IEFEQVN 344
Query: 452 VVTPT-GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG- 508
P + + L L V PG + + GP+G+GKS+LF++L + SG I GV
Sbjct: 345 FAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL 404
Query: 509 -----SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVE-----PLTHGGMVELLK 556
++L + VPQ P ++ + + Y P +D+EVE H + L +
Sbjct: 405 RQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPE 464
Query: 557 NVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
D YL +R G LS G++QR+ +AR +LDE TSA+ + E+
Sbjct: 465 GYD-TYLGER---------GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQL 514
Query: 617 F-CAKVRAM-GTSCITISHRPALVAFHDVVLSLD 648
A M G + + I+HR A V D ++ +D
Sbjct: 515 VQQALETLMKGRTTLIIAHRLATVLKADRIVVMD 548
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 46/177 (25%), Positives = 70/177 (39%), Gaps = 26/177 (14%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-----VGSDL 511
+L E L+ + G L +TGPNG GK++L R+L GL SG + G +
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEP 71
Query: 512 NKEIFYVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
++ I Y+ P +A+ L + + V L E L
Sbjct: 72 HRNILYLGHLPGLKPELSALENL--HFWAAIHGGAQRTIEDALAAVGLT---GFEDLPAA 126
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623
LS G+Q+RL +ARL+ + ILDE T+A+ +RA
Sbjct: 127 Q-----------LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA 172
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 4e-12
Identities = 68/274 (24%), Positives = 118/274 (43%), Gaps = 33/274 (12%)
Query: 386 IISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANY- 444
II+L L +++ RLN E+ ++ E R + N
Sbjct: 431 IINLQPKLQAARVANNRLN----------EVYLVDSEFI-------NKKKRTELNNLNGD 473
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
I + V G+ ++ +++L ++ S I G +GSGKS+L ++L G + SG I
Sbjct: 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533
Query: 505 PGVGSD------LNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVELL 555
G L + I Y+PQ PY G++ + L+ S E+ + E+
Sbjct: 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACE--IAEIK 591
Query: 556 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
D+E + Y E G +S G++QR+ +AR K ILDE TS + T E+
Sbjct: 592 D--DIENMPLGYQTELSEE-GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEK 648
Query: 616 RFCAKVRAMG-TSCITISHRPALVAFHDVVLSLD 648
+ + + + I ++HR ++ D ++ LD
Sbjct: 649 KIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLD 682
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 4e-12
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 38/188 (20%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-- 502
IE + P G+ ++++ L++ G + I GP+G+GKS+L R L GL SG I
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63
Query: 503 ----AKPGVGSDLNKE------IFYVP-----QRPYTAVGTLRD------QLIYPLTSDQ 541
G +L K IF V R + ++ L S +
Sbjct: 64 NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE 123
Query: 542 EVEPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600
+ ++ L+ V L+ R LS G+QQR+ +AR +PK
Sbjct: 124 DKA-----QALDALERVGILDKAYQR---------ASTLSGGQQQRVAIARALVQQPKII 169
Query: 601 ILDECTSA 608
+ DE ++
Sbjct: 170 LADEPVAS 177
|
Length = 258 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 6e-12
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 18/179 (10%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IE + P G +++++L + PG + + GP+G+GKS+L R L GL SG +
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 505 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHG---------GMVEL 554
G D+NK ++ +G + Q + L V E + G + L
Sbjct: 61 DGT--DINKLKGKALRQLRRQIGMIFQQ--FNLIERLSVLENVLSGRLGRRSTWRSLFGL 116
Query: 555 LKNVDLE---YLLDRYP-PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
+ + L+R +K D+LS G+QQR+ +AR +PK + DE +++
Sbjct: 117 FPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASL 175
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 7e-12
Identities = 58/243 (23%), Positives = 105/243 (43%), Gaps = 34/243 (13%)
Query: 408 GYADRIHELMVISRELSIEDKSPQRNGSRNYFSE-ANYIEFSGVKVVTPTGNVLVENLTL 466
G A+ + + + + G + S IE +++++P G L L
Sbjct: 319 GAAESLVTFLE-------TPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNF 371
Query: 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLN-----KEIFYVPQ 520
+ G + + GP+G+GK+SL L G P G + G+ +L+ K + +V Q
Sbjct: 372 TLPAGQRIALVGPSGAGKTSLLNALLGFLPY-QGSLKINGIELRELDPESWRKHLSWVGQ 430
Query: 521 RPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP-----PEKEI 573
P GTLRD ++ P SD++++ + L+N + L P P +
Sbjct: 431 NPQLPHGTLRDNVLLGNPDASDEQLQ--------QALENAWVSEFLPLLPQGLDTPIGDQ 482
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC-AKVRAM-GTSCITI 631
G LS+G+ QRL +AR + +LDE T+++ E+ A A + + +
Sbjct: 483 AAG--LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMV 540
Query: 632 SHR 634
+H+
Sbjct: 541 THQ 543
|
Length = 588 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 8e-12
Identities = 63/295 (21%), Positives = 91/295 (30%), Gaps = 83/295 (28%)
Query: 1061 GGINRIFELEELLDAAQPGDDEISGSSQH-KWNSTDYQDSISFSKLDIITPSQKLLARQL 1119
+++F L E P SG IS L P K L
Sbjct: 289 AAADKLFTLLE-----SPVATPGSGEKAEVANEP---PIEISLENLSFRYPDGKPALSDL 340
Query: 1120 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIFY 1176
I G+ + G +G+GKS++ +L G G + + + EA I +
Sbjct: 341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK-QISW 399
Query: 1177 VPQRPYTCLGTLRDQI-IYPLSREEAEL-RALKLHGKGEKLVDTTNILDSYLKTILEGVR 1234
V Q PY GT+R+ I + + E+ AL G E V + LD+ I EG
Sbjct: 400 VSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLE-FVPKPDGLDT---VIGEGGA 455
Query: 1235 LSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTL 1294
LS G+ QRL +
Sbjct: 456 G--------------------LSGGQAQRLAL---------------------------- 467
Query: 1295 FFPPFSYKARLFFHKPKFGILDECTNATSVDVE------EQLYRLAKDMGITFVT 1343
AR +LDE T +D E + L LAK + +T
Sbjct: 468 --------ARALLSPASLLLLDEPT--AHLDAETEQIILQALQELAKQKTVLVIT 512
|
Length = 559 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 9e-12
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 20/131 (15%)
Query: 485 SSLFRVLGGLWPLVSG-------HIAKPGVGSDLNKEIFYVPQRPYTAVG-TLRDQLIYP 536
S+L +++ GL SG L K I V Q P T+R+ L +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596
L + E L+ V L LDR P LS G++QR+ +AR K
Sbjct: 61 LRDKEADAR-----AEEALERVGLPDFLDREPV-------GTLSGGQKQRVAIARALLKK 108
Query: 597 PKFAILDECTS 607
PK +LDE T+
Sbjct: 109 PKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 15/150 (10%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIF 516
++++ L+V GS + + GP+GSGKS+L R++ GL SG I G +++I
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 517 YVPQRPYTAVG--TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 574
+V Q Y T+RD + + L + + + ELL+ V LE L DRYP
Sbjct: 76 FVFQH-YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP------ 128
Query: 575 WGDELSLGEQQRLGMARLFYHKPKFAILDE 604
++LS G++QR+ +AR +P+ +LDE
Sbjct: 129 --NQLSGGQRQRVALARALAVEPQVLLLDE 156
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 25/151 (16%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR- 521
+++L+++PG L + GPNG+GKS+L RV+ GL G I + G I YVPQ+
Sbjct: 22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----KLRIGYVPQKL 76
Query: 522 ---PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 578
+ R + P T +++ P LK V +L+D P +K
Sbjct: 77 YLDTTLPLTVNRFLRLRPGTKKEDILP--------ALKRVQAGHLID-APMQK------- 120
Query: 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
LS GE QR+ +AR ++P+ +LDE T V
Sbjct: 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGV 151
|
Length = 251 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 25/163 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G V ++ ++L ++ G + GP+G GK++L R++ G SG I G K+I
Sbjct: 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG------KDIT 65
Query: 517 YVP--QRPYTAVG---------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD 565
+P +RP V T+ + + + L + + + E L V LE +
Sbjct: 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYAN 125
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
R P +LS G+QQR+ +AR ++PK +LDE A
Sbjct: 126 RKP--------SQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 4e-11
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 505
E + L +N++L ++ G + + GPNGSGKS+L R + GL SG I
Sbjct: 1 EIENLSFRYGGRTAL-DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILID 59
Query: 506 GVG------SDLNKEIFYVPQ 520
G +L + I YVPQ
Sbjct: 60 GKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 4e-11
Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 34/190 (17%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE----IF 516
V+N++ +V PG + GPNG+GK++ FR++ GL G I G L++E I
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITW--NGGPLSQEIKNRIG 75
Query: 517 YVP-QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-------LEYLLDRYP 568
Y+P +R T+ DQL Y LK + L+ L+R
Sbjct: 76 YLPEERGLYPKMTVEDQLKYLAE----------------LKGMPKAEIQKKLQAWLERLE 119
Query: 569 -PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA---VTTDMEERFCAKVRAM 624
K+ ELS G QQ++ H+P+ ILDE S V ++ + +++
Sbjct: 120 IVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE 179
Query: 625 GTSCITISHR 634
G + I SHR
Sbjct: 180 GATIIFSSHR 189
|
Length = 300 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 4e-11
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKE- 514
++N++L+VE G +I GP GSGKS L + G SG I G ++L E
Sbjct: 11 KEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK 70
Query: 515 --IFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568
I YVPQ P+ T+ + Y L + + ++E+ + + +++LL+R P
Sbjct: 71 RDISYVPQNYALFPHM---TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP 127
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
+ LS GEQQR+ +AR PK +LDE SA+ +E+
Sbjct: 128 --------ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEK 167
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 5e-11
Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 33/167 (19%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G ++ NL L + G L + GP+G GK+++ R++ G SG I G D+
Sbjct: 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQ--DITH--- 80
Query: 517 YVP--QRPYTAV---------GTLRDQLIYPL----TSDQEVEPLTHGGMVELLKNVDLE 561
VP R V T+ + + + L T E+ P E L+ V LE
Sbjct: 81 -VPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVM----EALRMVQLE 135
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
R P +LS G+QQR+ +AR +KPK +LDE SA
Sbjct: 136 EFAQRKP--------HQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174
|
Length = 375 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-11
Identities = 59/194 (30%), Positives = 85/194 (43%), Gaps = 44/194 (22%)
Query: 445 IEFSGV-KVVTPTGN--VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
IE V KV TG +++++L V G I G +G+GKS+L R + GL SG
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 502 IAKPGV------GSDL---NKEIFYVPQ-------RPYTAVGTLRDQLIYPL----TSDQ 541
+ G G +L + I + Q R T+ + + PL
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR------TVFENVALPLEIAGVPKA 115
Query: 542 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
E+E ELL+ V LE D YP +LS G++QR+G+AR + PK +
Sbjct: 116 EIEERVL----ELLELVGLEDKADAYP--------AQLSGGQKQRVGIARALANNPKVLL 163
Query: 602 LDECTSAV---TTD 612
DE TSA+ TT
Sbjct: 164 CDEATSALDPETTQ 177
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 7e-11
Identities = 53/160 (33%), Positives = 74/160 (46%), Gaps = 19/160 (11%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEI 515
++ N++ + G LITGP+G GKS+L +++ L SG + G S L EI
Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78
Query: 516 F-----YVPQRPYTAVGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNVDLEYL-LDRYP 568
+ Y Q P T+ D LI+P +Q+ +P L DLE L
Sbjct: 79 YRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP------AIFLD--DLERFALPDTI 130
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
K I ELS GE+QR+ + R PK +LDE TSA
Sbjct: 131 LTKNIA---ELSGGEKQRISLIRNLQFMPKVLLLDEITSA 167
|
Length = 225 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 9e-11
Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 40/206 (19%)
Query: 452 VVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD 510
++ TG + V +++L V G +I G +GSGKS+L R + L SG + G D
Sbjct: 30 ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQ--D 87
Query: 511 LN------------KEIFYV-------PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551
+ K+I V P R T+ + + + L
Sbjct: 88 IAAMSRKELRELRRKKISMVFQSFALLPHR------TVLENVAFGLEVQGVPRAEREERA 141
Query: 552 VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--- 608
E L+ V LE +YP DELS G QQR+G+AR P ++DE SA
Sbjct: 142 AEALELVGLEGWEHKYP--------DELSGGMQQRVGLARALAVDPDILLMDEAFSALDP 193
Query: 609 -VTTDMEERFCAKVRAMGTSCITISH 633
+ +M++ + + + I+H
Sbjct: 194 LIRREMQDELLRLQAELQKTIVFITH 219
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 9e-11
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 34/182 (18%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V V+++ L +E G L++ GP+GSGK++ +++ L SG I
Sbjct: 2 IEFENV-SKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60
Query: 505 PGV------GSDLNKEIFYVPQR----PYTAVG---TLRDQL--IYPLTSDQEVEPLTHG 549
G +L ++I YV Q+ P+ V +L + +
Sbjct: 61 DGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRAD----- 115
Query: 550 GMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
ELL V L+ DRYP ELS G+QQR+G+AR P ++DE
Sbjct: 116 ---ELLDLVGLDPSEYADRYP--------HELSGGQQQRVGVARALAADPPILLMDEPFG 164
Query: 608 AV 609
A+
Sbjct: 165 AL 166
|
Length = 309 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 9e-11
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 25/178 (14%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V G V NL L++ G L++ GP+GSGK++ +++ L SG I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 505 PGV------GSDLNKEIFYVPQRPYTAVG-----TLRDQLIYPLTSDQEVEPLTHGGMVE 553
G +L ++I YV Q+ +G T+ + + + + E
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQ----IGLFPHMTVEENIALVPKLLKWPKEKIRERADE 116
Query: 554 LLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
LL V L+ DRYP ELS G+QQR+G+AR P ++DE A+
Sbjct: 117 LLALVGLDPAEFADRYP--------HELSGGQQQRVGVARALAADPPLLLMDEPFGAL 166
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 50/170 (29%), Positives = 73/170 (42%), Gaps = 34/170 (20%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK-EI 515
+++ + L V+ G ++I GP+GSGKS+L R + L SG I G+ +K I
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 516 FYVPQRPYTAVG------------TLRDQLIYPLT-----SDQEVEPLTHGGMVELLKNV 558
+ Q+ VG T+ + + S E E ELL+ V
Sbjct: 72 NELRQK----VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL----ELLEKV 123
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
L D YP +LS G+QQR+ +AR PK + DE TSA
Sbjct: 124 GLADKADAYP--------AQLSGGQQQRVAIARALAMNPKVMLFDEPTSA 165
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 1e-10
Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 33/163 (20%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522
++L VE G ++I GP+GSGKS+L R L GL SG I G K+I + ++
Sbjct: 20 GISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK- 78
Query: 523 YTAVG------------TLRDQLIYPLT-----SDQEVEPLTHGGMVELLKNVDLEYLLD 565
VG T+ + + S E + ELL+ V L D
Sbjct: 79 ---VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREK---AL-ELLEKVGLADKAD 131
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
YP +LS G+QQR+ +AR PK + DE TSA
Sbjct: 132 AYP--------AQLSGGQQQRVAIARALAMDPKVMLFDEPTSA 166
|
Length = 240 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 2e-10
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 23/263 (8%)
Query: 402 RLNRLSGYADRIHELMVISREL-SIEDKSPQRNGSRNYFSEANY---IEFSGVKVVTPTG 457
RL+++SG+ +I E + +ED QR + N +EF +
Sbjct: 288 RLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANS 347
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDL 511
+ V +++ + + G + I GP G+GK++L +L ++ G I G+ L
Sbjct: 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESL 407
Query: 512 NKEIFYVPQRPYTAVGTLRDQLIYPLT--SDQEVEPLTHGGMVELLKNVDLEYLLDRYPP 569
K I V Q ++R+ + +D+EV +++L R
Sbjct: 408 RKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAH-------DFILKRSNG 460
Query: 570 EKEI--NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTS 627
+ G+ LS GE+QRL +AR +LDE TSA+ + E R + A+ +
Sbjct: 461 YDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKN 520
Query: 628 CIT--ISHRPALVAFHDVVLSLD 648
T I+HR + V D+VL LD
Sbjct: 521 RTTFIIAHRLSTVRNADLVLFLD 543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-10
Identities = 56/204 (27%), Positives = 82/204 (40%), Gaps = 37/204 (18%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD---- 510
P G +++ L E G L + G NG+GKS+L L GL SG + G D
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 511 ----LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE--PLTHGG--------MVELLK 556
+ + V Q P DQL DQ+V PL G + E L
Sbjct: 62 GLLERRQRVGLVFQDP-------DDQLFAA-DVDQDVAFGPLNLGLSEAEVERRVREALT 113
Query: 557 NVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
V L +R P LS GE++R+ +A +P +LDE T+ + E+
Sbjct: 114 AVGASGLRER-PTH-------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ 165
Query: 617 FCA---KVRAMGTSCITISHRPAL 637
A ++RA G + + +H L
Sbjct: 166 MLAILRRLRAEGMTVVISTHDVDL 189
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 3e-10
Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 44/208 (21%)
Query: 452 VVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S 509
++ TG V+ V + +L VE G +I G +GSGKS+L R+L L G I G +
Sbjct: 34 ILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIA 93
Query: 510 DLNKE------------IF----YVPQRPYTAVGTLRDQLIYPL----TSDQEVEPLTHG 549
L+ +F +P R T+ + + + L E E
Sbjct: 94 KLSAAELRELRRKKISMVFQSFALLPHR------TVLENVAFGLEVQGVPKAEREERAL- 146
Query: 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA- 608
E L+ V LE D+YP +ELS G QQR+G+AR + P ++DE SA
Sbjct: 147 ---EALELVGLEGYADKYP--------NELSGGMQQRVGLARALANDPDILLMDEAFSAL 195
Query: 609 ---VTTDMEERFCAKVRAMGTSCITISH 633
+ T+M++ + + + I+H
Sbjct: 196 DPLIRTEMQDELLELQAKLKKTIVFITH 223
|
Length = 386 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-10
Identities = 48/179 (26%), Positives = 72/179 (40%), Gaps = 50/179 (27%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+EF V G +L+++L+ +++ G + I GPNG+GKS+L ++L G +SG + K
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV-K 380
Query: 505 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
G +I Y Q RD+L K V LE L
Sbjct: 381 VGE----TVKIGYFDQH--------RDELD-------------------PDKTV-LEELS 408
Query: 565 DRYPPEKEINWGD-----------------ELSLGEQQRLGMARLFYHKPKFAILDECT 606
+ +P E LS GE+ RL +A+L P +LDE T
Sbjct: 409 EGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT 467
|
Length = 530 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-10
Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 14/202 (6%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLN- 512
P G +++++++L++EPG + I GP+GSGKS+L R+L G SG + G + L+
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDV 522
Query: 513 ----KEIFYVPQRPYTAVGTLRDQLI--YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
+++ V Q G++ + + PLT D+ E G+ E ++ + + +
Sbjct: 523 QAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMG--MHT 580
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626
E G LS G++QRL +AR KP+ + DE TSA+ + + +
Sbjct: 581 VISEG----GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKV 636
Query: 627 SCITISHRPALVAFHDVVLSLD 648
+ I I+HR + + D + LD
Sbjct: 637 TRIVIAHRLSTIRNADRIYVLD 658
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 5e-10
Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 41/238 (17%)
Query: 430 PQRNGSRNYFSEANYIEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLF 488
P+ G+ I F ++ P ++ NL L ++PG + I GP+GSGKS+L
Sbjct: 450 PELRGA---------ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLT 500
Query: 489 RVLGGLWP------LVSGH---IAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQ--LIYPL 537
++L L+ LV G IA P + L +++ V Q ++RD L P
Sbjct: 501 KLLQRLYTPQHGQVLVDGVDLAIADP---AWLRRQMGVVLQENVLFSRSIRDNIALCNPG 557
Query: 538 TSDQEVEPLT-----HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592
+ V H + EL + + E EK G LS G++QR+ +AR
Sbjct: 558 APFEHVIHAAKLAGAHDFISELPQGYNTEVG------EK----GANLSGGQRQRIAIARA 607
Query: 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
P+ I DE TSA+ + E +R + G + I I+HR + V D ++ L+
Sbjct: 608 LVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLE 665
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 5e-10
Identities = 62/208 (29%), Positives = 93/208 (44%), Gaps = 49/208 (23%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDL--------- 511
V+ +TL++ G L + G +G GKS+ R + GL G +A +G DL
Sbjct: 37 VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVA--WLGKDLLGMKDDEWR 94
Query: 512 --NKEIFYVPQRPYTAVG---TLRD------QLIYPLTSDQEVEPLTHGGM--VELLKNV 558
+I + Q P ++ T+ + + +P S QEV+ M V LL N
Sbjct: 95 AVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN- 153
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC 618
L++RYP E S G+ QR+G+AR +PK I DE SA+ ++
Sbjct: 154 ----LINRYP--------HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQ---- 197
Query: 619 AKV--------RAMGTSCITISHRPALV 638
A+V R MG S I I+H A+V
Sbjct: 198 AQVVNLLQQLQREMGLSLIFIAHDLAVV 225
|
Length = 331 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 5e-10
Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 34/203 (16%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG----VGSD----- 510
+++++T+K+ S I GP+GSGKS+L +VL L + I G G D
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 511 ---LNKEIFYVPQRPYTAVG-TLRDQLIYPLTS-----DQEVEPLTHGGMVELLKNVDL- 560
L KE+ V Q+P ++ D + YPL S +E++ + + E L+ V L
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI----VEECLRKVGLW 140
Query: 561 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEER 616
+ + DR +LS G+QQRL +AR KPK ++DE TS + + +E+
Sbjct: 141 KEVYDRLNSP-----ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKL 195
Query: 617 FCAKVRAMGTSCITISHRPALVA 639
+ + + +SH P VA
Sbjct: 196 ITELKNEI--AIVIVSHNPQQVA 216
|
Length = 257 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 6e-10
Identities = 53/220 (24%), Positives = 86/220 (39%), Gaps = 51/220 (23%)
Query: 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH----- 501
F G+ + +++ V PG + GPNG+GK++LF ++ G SG
Sbjct: 10 FGGLVALD--------DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG 61
Query: 502 ----------IAKPGVG-SDLNKEIF---------YVPQRPYTAVGTLRDQLIYPLTSDQ 541
IA+ G+G + +F V + T G L + ++
Sbjct: 62 EDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLAR---ARREER 118
Query: 542 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
E ELL+ V L L DR ELS G+Q+RL +AR PK +
Sbjct: 119 EARERAE----ELLERVGLADLADRPA--------GELSYGQQRRLEIARALATDPKLLL 166
Query: 602 LDECTSAVTTDMEERFCA---KVRAMGTSCITISHRPALV 638
LDE + + + E ++R G + + + H +V
Sbjct: 167 LDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVV 206
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 6e-10
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 23/158 (14%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK--- 513
+++L L + G +++ GP+G GK++ R++ GL SG I G D+
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGR--DVTDLPP 69
Query: 514 ---EIFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
+I V Q P+ V D + + L + + + E+ + + +E+LLDR
Sbjct: 70 KDRDIAMVFQNYALYPHMTV---YDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR 126
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
P +LS G++QR+ + R +PK ++DE
Sbjct: 127 KP--------KQLSGGQRQRVALGRAIVREPKVFLMDE 156
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 7e-10
Identities = 65/301 (21%), Positives = 102/301 (33%), Gaps = 83/301 (27%)
Query: 1056 FVELSGGINRIFELEELLDA---AQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ 1112
F L I L ++LD D++ + + Q ++ + P Q
Sbjct: 300 FQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQ----------ALELRNVSFTYPGQ 349
Query: 1113 KLLARQ-LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEA 1168
+ A + + G+ + + G +GSGKS++ ++L G W GS+T +DE+A
Sbjct: 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQA 409
Query: 1169 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKT 1228
I + QR + GTLRD + + + D L
Sbjct: 410 LRE-TISVLTQRVHLFSGTLRDNL----------------------RLANPDASDEELWA 446
Query: 1229 ILEGVRLSYLLEREEVGWDANLNWED--ILSLGEQQRLGMVSHLVLIQLCSINKISELDW 1286
L+ V L LLE G + L E LS GE++RL +
Sbjct: 447 ALQQVGLEKLLESAPDGLNTWLG-EGGRRLSGGERRRLAL-------------------- 485
Query: 1287 LIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL----AKDMGITFV 1342
AR H +LDE T E Q+ L A+ + V
Sbjct: 486 ----------------ARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMV 529
Query: 1343 T 1343
T
Sbjct: 530 T 530
|
Length = 573 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 7e-10
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 22/181 (12%)
Query: 427 DKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 486
+K+ Q N R + S+ N + FS + +V G +++N+ LK+E G L ITG GSGK+S
Sbjct: 22 EKAKQENNDRKHSSDDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTS 78
Query: 487 LFR-VLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP 545
L +LG L P G I G I + Q + GT+++ +I+ ++ D+
Sbjct: 79 LLMLILGELEP-SEGKIKHSG-------RISFSSQFSWIMPGTIKENIIFGVSYDEY--- 127
Query: 546 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAIL 602
++K LE + ++P + G+ LS G++ R+ +AR Y +L
Sbjct: 128 ----RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLL 183
Query: 603 D 603
D
Sbjct: 184 D 184
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 8e-10
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIAKPGVGSDLNKEIFYV 518
+++++ VE G + GPNG+GK++ R++ G+ SG + I Y+
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75
Query: 519 PQ-RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP-PEKEINWG 576
P+ R + DQL+Y L + ++ E + +D L+R E
Sbjct: 76 PEERGLYPKMKVIDQLVY-LAQLKGLKK------EEARRRID--EWLERLELSEYANKRV 126
Query: 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSA---VTTDMEERFCAKVRAMGTSCITISH 633
+ELS G QQ++ H P+ ILDE S V ++ + ++ G + I +H
Sbjct: 127 EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTH 186
Query: 634 RPALV 638
+ LV
Sbjct: 187 QMELV 191
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 59/240 (24%), Positives = 94/240 (39%), Gaps = 80/240 (33%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC-GIFYV 1177
++FE+ PG+ + GPNG+GK+++ ++L GL SG + + +E I YV
Sbjct: 24 VSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83
Query: 1178 PQRP--YTCLGTLRDQI-----IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTIL 1230
PQ P Y L T+R+ + +Y LS+EEAE R E+L++ L+ +
Sbjct: 84 PQEPSLYPEL-TVRENLEFFARLYGLSKEEAEERI-------EELLELFG-LEDKANKKV 134
Query: 1231 EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYC 1290
LS G +QRL +
Sbjct: 135 RT-----------------------LSGGMKQRLSI------------------------ 147
Query: 1291 CLTLFFPPFSYKARLFFHKPKFGILDECTN----ATSVDVEEQLYRLAKDMGITFVTSSQ 1346
A H P+ ILDE T+ + ++ E L LAK+ G+T + S+
Sbjct: 148 ------------ALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTH 195
|
Length = 293 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 63/189 (33%), Positives = 84/189 (44%), Gaps = 35/189 (18%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG---- 500
IEF V VL N+ L ++ G ++I GP+GSGKS+L R + L + SG
Sbjct: 2 IEFKNVSKHFGPTQVL-HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60
Query: 501 ---HIAKPGVG-SDLNKEIFYVPQRPY-----TAVGTLRDQLIYPL----TSDQEVEPLT 547
+ P V + +E V Q+ Y TA L + + PL S +E E
Sbjct: 61 DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA---LENVMFGPLRVRGASKEEAEKQA 117
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
ELL V L YP ELS G+QQR+ +AR KPK + DE TS
Sbjct: 118 R----ELLAKVGLAERAHHYP--------SELSGGQQQRVAIARALAVKPKLMLFDEPTS 165
Query: 608 AVTTDMEER 616
A+ D E R
Sbjct: 166 AL--DPELR 172
|
Length = 240 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 1e-09
Identities = 53/216 (24%), Positives = 86/216 (39%), Gaps = 57/216 (26%)
Query: 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG 506
F GVK + ++L V PG + G NG+GKS+L ++L G++P SG
Sbjct: 18 FGGVKALD--------GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG------ 63
Query: 507 VGSDLNKEIFY--VPQRPYTAVGTLRD--QLIYPLTSDQEV----------------EPL 546
EI P + L ++ QE+ EP
Sbjct: 64 -------EILIDGKPVAFSSPRDALAAGIATVH-----QELSLVPNLSVAENIFLGREPT 111
Query: 547 THGGMVELLK-NVDLEYLLDRY----PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
G+++ LL R P+ + +LS+ ++Q + +AR + I
Sbjct: 112 RRFGLIDRKAMRRRARELLARLGLDIDPDTLVG---DLSIAQRQMVEIARALSFDARVLI 168
Query: 602 LDECTSAVT---TDMEERFCAKVRAMGTSCITISHR 634
LDE T+A+T T+ +++A G + I ISHR
Sbjct: 169 LDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHR 204
|
Length = 500 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 46/180 (25%), Positives = 71/180 (39%), Gaps = 31/180 (17%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
L +L+ + G L ITGPNG+GK++L R+L GL +G + G +E +
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESY 73
Query: 517 -----YVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD- 565
Y+ +P TA+ L + + E L V L L D
Sbjct: 74 HQALLYLGHQPGIKTELTALENLH---FWQRFHGSGNAA----TIWEALAQVGLAGLEDL 126
Query: 566 --RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623
LS G+Q+R+ +ARL+ ILDE +A+ + A + A
Sbjct: 127 PVGQ-----------LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAA 175
|
Length = 209 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 30/186 (16%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDL-----NKEIFY 517
++TL G L++ GP+G+GKSSL RVL L SG + G D +K I
Sbjct: 20 DITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI-- 77
Query: 518 VPQRPYTAVGTLRDQL-IYPLTSDQE--VE-PLTHGGM---------VELLKNVDLEYLL 564
+ VG + Q ++P + QE +E P G+ +LLK + L+
Sbjct: 78 --RDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA 135
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM 624
DRYP LS G+QQR+ +AR +P+ + DE T+A+ ++ + + ++ +
Sbjct: 136 DRYPL--------HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL 187
Query: 625 GTSCIT 630
+ IT
Sbjct: 188 AETGIT 193
|
Length = 242 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 37/166 (22%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522
++ L++ PG +++TGP+GSGK++L ++GGL + G + L +E++ ++
Sbjct: 23 DINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL------KVLGQELYGASEKE 76
Query: 523 YTAVGTLRDQLIY---------PLTSDQEV-------EPLTHGGMVEL----LKNVDLEY 562
+ R + Y LT+ Q V L++ E L+ V L
Sbjct: 77 LVQL---RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGD 133
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
LD YP LS G++QR+ +AR H+PK + DE T+A
Sbjct: 134 HLDYYP--------HNLSGGQKQRVAIARALVHRPKLVLADEPTAA 171
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 23/185 (12%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
V +++ + E G + G NG+GK++L R++ L SG + GV D ++ +V +
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGV--DTVRDPSFVRR 75
Query: 521 RPYTAVGTLRDQ--LIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGD- 577
+ +G L + L LT+ E L + + L +++ + K + +
Sbjct: 76 K----IGVLFGERGLYARLTAR---ENLKYFARLNGLSRKEIKARIAEL--SKRLQLLEY 126
Query: 578 ------ELSLGEQQRLGMARLFYHKPKFAILDECTSAV---TTDMEERFCAKVRAMGTSC 628
E S G +Q++ +AR H P +LDE TS + T F +++ G +
Sbjct: 127 LDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAV 186
Query: 629 ITISH 633
I SH
Sbjct: 187 IFSSH 191
|
Length = 245 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 39/208 (18%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDL-N 512
++L + G + I G +GSGKS+L +LGGL SG + G + L N
Sbjct: 23 GVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRN 82
Query: 513 KEIFYVPQ-----RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRY 567
K++ ++ Q +TA L + + L + V+ E+L+ V LE+ ++
Sbjct: 83 KKLGFIYQFHHLLPDFTA---LENVAMPLLIGKKSVKEAKERAY-EMLEKVGLEHRINHR 138
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV------ 621
P ELS GE+QR+ +AR ++P + DE T +++ +
Sbjct: 139 P--------SELSGGERQRVAIARALVNQPSLVLADEPTG----NLDNNNAKIIFDLMLE 186
Query: 622 --RAMGTSCITISHRPALVAFHDVVLSL 647
R + TS + ++H L D VL +
Sbjct: 187 LNRELNTSFLVVTHDLELAKKLDRVLEM 214
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 35/210 (16%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK--------- 513
N++L +E G + + G +G GKS+L R+L GL G ++ G DL +
Sbjct: 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQ--DLYQLDRKQRRAF 86
Query: 514 --EIFYVPQRPYTAVG---TLRDQLIYPL---TSDQEVEPLTHGGMVELLKNVDLE-YLL 564
++ V Q +AV T+R + PL TS E E + ELL V L
Sbjct: 87 RRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKAR--IAELLDMVGLRSEDA 144
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM 624
D+ P + LS G+ QR+ +AR KPK +LDE S + ++ +R +
Sbjct: 145 DKLPRQ--------LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKL 196
Query: 625 ----GTSCITISHRPALV-AFHDVVLSLDG 649
GT+ + I+H LV +F V +D
Sbjct: 197 QQAFGTAYLFITHDLRLVQSFCQRVAVMDK 226
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 28/205 (13%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKE 514
+++++ V G + I G NGSGKS+L ++L GL +G I G+ D+ ++
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82
Query: 515 IFYVPQRPYTA-VG-TLRDQLIYPLTSDQEVEPLTHGGMVE----LLKNVDLEYLLDRYP 568
+ V Q P VG T++D + + L E + MVE L+ V +E L+R P
Sbjct: 83 VGMVFQNPDNQFVGATVQDDVAFGL----ENIGVPREEMVERVDQALRQVGMEDFLNREP 138
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM---- 624
LS G++QR+ +A + +P ILDE TS + VR +
Sbjct: 139 --------HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK 190
Query: 625 GTSCITISHRPALVAFHDVVLSLDG 649
G + ++I+H A D V+ ++
Sbjct: 191 GITVLSITHDLDEAAQADRVIVMNK 215
|
Length = 279 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 34/186 (18%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+E + V P G ++N+ L + PG + I GP+G+GKS+L R + L SG I
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 505 PGV------GSDLNK---EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHG------ 549
G G L K I + Q Y LI LT + V HG
Sbjct: 62 EGTDITKLRGKKLRKLRRRIGMIFQH-Y--------NLIERLTVLENV---LHGRLGYKP 109
Query: 550 ---GMVELLKNVDLE---YLLDRYP-PEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602
++ D E L+R +K D+LS G+QQR+ +AR +P +
Sbjct: 110 TWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILA 169
Query: 603 DECTSA 608
DE ++
Sbjct: 170 DEPIAS 175
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 3e-09
Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 24/198 (12%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-SDLNKE-- 514
+++ + L V+ G I GPNGSGKS+L + G + + G I G +L+ +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 515 ----IFYVPQRPYTAVG-TLRDQLIYPLTS---DQEVEPLTHGGMVELLKNVDL-EYLLD 565
IF Q P G T D L + + + + P + E + + L E L+
Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE 138
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM- 624
RY +N G S GE++R + +L +PK AILDE S + D + + A+
Sbjct: 139 RY-----VNEG--FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR 191
Query: 625 --GTSCITISHRPALVAF 640
G + I+H L+ +
Sbjct: 192 EEGRGVLIITHYQRLLDY 209
|
Length = 251 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 25/153 (16%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
+++++L V+ G GPNG+GK++ +++ GL SG I G N E
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIE------ 69
Query: 521 RPYTAVGTLRD-QLIYP-LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 578
+G L + YP LT+ E L + ++ ++ +LD + D
Sbjct: 70 -ALRRIGALIEAPGFYPNLTA---RENLRLLARLLGIRKKRIDEVLD------VVGLKDS 119
Query: 579 -------LSLGEQQRLGMARLFYHKPKFAILDE 604
SLG +QRLG+A P ILDE
Sbjct: 120 AKKKVKGFSLGMKQRLGIALALLGNPDLLILDE 152
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKP--GVGSDL 511
+L L+ + G + I GPNG+GK+SL R+L GL +G + +P +
Sbjct: 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEY 72
Query: 512 NKEIFYVPQRP-----YTAVGTLR--DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
++++ Y+ +P TA+ LR +L P + E L G+ E +
Sbjct: 73 HQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGL------AGFEDVP 126
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
R LS G+Q+R+ +ARL+ + ILDE
Sbjct: 127 VRQ-----------LSAGQQRRVALARLWLTRAPLWILDE 155
|
Length = 204 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 32/193 (16%)
Query: 463 NLTLKVE---PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VGSDLNKEIFYV 518
+ TLK++ I G +G+GKS+L R + GL G I G V D K+I
Sbjct: 12 DFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLP 71
Query: 519 PQRPYTAVG------------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
PQ+ +G +R+ L + L + E + ELL + L++LL+R
Sbjct: 72 PQQ--RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRIS--VDELLDLLGLDHLLNR 127
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626
YP +LS GE+QR+ +AR +P+ +LDE SA+ + + +++ +
Sbjct: 128 YP--------AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK 179
Query: 627 S----CITISHRP 635
+ I ++H
Sbjct: 180 NLNIPVIFVTHDL 192
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-09
Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 27/172 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
L+EN++L + PG + + G NG+GKS+L ++L G SG + +P +
Sbjct: 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK-----GLRVG 69
Query: 517 YVPQRPY-TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY--------LLDRY 567
Y+ Q P T+ D +I +E+ L D LD +
Sbjct: 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGW 129
Query: 568 PPEKEIN-----WGD--------ELSLGEQQRLGMARLFYHKPKFAILDECT 606
E G LS G ++R+ +AR +P +LDE T
Sbjct: 130 TLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPT 181
|
Length = 530 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 54/215 (25%), Positives = 82/215 (38%), Gaps = 31/215 (14%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V P G ++ + + + G + + GP+G+GKS+L +++ SG I
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 505 PGVG-SDLNKEIFYVPQRPY--TAVGT-LRD-QLIYPLTSDQEV----EPLTHGGMV--- 552
G SDL PY +G +D +L+ + V E
Sbjct: 61 NGQDVSDLRGR-----AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK 115
Query: 553 ---ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
L+ V L + P ELS GEQQR+ +AR + P I DE T +
Sbjct: 116 RVPAALELVGLSHKHRALP--------AELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
Query: 610 TTDMEERFC---AKVRAMGTSCITISHRPALVAFH 641
D K+ GT+ + +H LV
Sbjct: 168 DPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTT 202
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 5e-09
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 37/181 (20%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
++ +++L +E G + + GP+GSGKS+L R + GL SG I G DL
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGE--DLTDLED 69
Query: 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWG 576
+P LR ++ Q+ H + +L+N+
Sbjct: 70 ELP--------PLRRRIGMVF---QDFALFPH---LTVLENI-------ALG-------- 100
Query: 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSA---VTTDMEERFCAKVRAM-GTSCITIS 632
LS G+QQR+ +AR P +LDE TSA +T ++A G + + ++
Sbjct: 101 --LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVT 158
Query: 633 H 633
H
Sbjct: 159 H 159
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 6e-09
Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 28/225 (12%)
Query: 445 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG- 500
+E ++ P+G VE ++L + G + I G +GSGKS+L +LG L SG
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 501 -HIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGM------- 551
+A V + L+ + +R + R L+ LT+ Q VE P + G+
Sbjct: 65 YRVAGQDV-ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLL 123
Query: 552 --VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
ELL+ + LE ++ Y P +LS G+QQR+ +AR + + + DE T A+
Sbjct: 124 RAQELLQRLGLEDRVE-YQP-------SQLSGGQQQRVSIARALMNGGQVILADEPTGAL 175
Query: 610 TTDMEERFCA---KVRAMGTSCITISHRPALVAFHDVVLSL-DGE 650
+ E A ++R G + I ++H P + A + V+ + DGE
Sbjct: 176 DSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGE 220
|
Length = 648 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 6e-09
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 28/158 (17%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE------ 514
+ ++L+VE G + + G NG+GK++L + + GL SG I G D+
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGE--DITGLPPHERA 76
Query: 515 ---IFYVPQRPYTAVGTLRDQLIYPLTSDQE---VEPLTHGGMVELLKNVDLEYLLDRYP 568
I YVP+ R I+P + +E + + DLE + + +P
Sbjct: 77 RLGIAYVPEG--------RR--IFPRLTVEENLLLGAYARRDKEA--QERDLEEVYELFP 124
Query: 569 PEKEI--NWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
KE LS GEQQ L +AR +PK +LDE
Sbjct: 125 RLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDE 162
|
Length = 237 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 6e-09
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 35/176 (19%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-GSDLN---KEIF 516
+++++L + G + + GP+GSGK++L R++ GL SG I G +D+ + +
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVG 77
Query: 517 YVPQ-----RPYT-----AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
+V Q R T A G LR + + E+ H ELLK V L++L DR
Sbjct: 78 FVFQHYALFRHMTVFDNVAFG-LRVKPRSERPPEAEIRAKVH----ELLKLVQLDWLADR 132
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622
YP + LS G++QR+ +AR +PK +LDE A+ AKVR
Sbjct: 133 YPAQ--------LSGGQRQRVALARALAVEPKVLLLDEPFGALD--------AKVR 172
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 6e-09
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 29/173 (16%)
Query: 476 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP--QRPYTAV------- 526
+ GP+G GK++L R+L G SG I G ++ VP R V
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGE------DVTNVPPHLRHINMVFQSYALF 54
Query: 527 --GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQ 584
T+ + + + L + ++E L+ V LE DR P +LS G+Q
Sbjct: 55 PHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP--------HQLSGGQQ 106
Query: 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM----GTSCITISH 633
QR+ +AR KPK +LDE SA+ + ++ +++ + G + + ++H
Sbjct: 107 QRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 7e-09
Identities = 62/263 (23%), Positives = 99/263 (37%), Gaps = 71/263 (26%)
Query: 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
S+ FS + + P ++ R ++F + PG+ + + GP+G+GKS++ +L G GS+
Sbjct: 321 SLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380
Query: 1159 ---KPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQI-IYPLSREEAEL-RALKLHGKGE 1213
P D I +VPQ P+ GT+ + I + +AE+ AL+ G
Sbjct: 381 VNGVPLADAD-ADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAG--- 436
Query: 1214 KLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLI 1273
LD ++ + +G L + G LS G+ QRL +
Sbjct: 437 --------LDEFVAALPQG--LDTPIGEGGAG----------LSGGQAQRLAL------- 469
Query: 1274 QLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECT----NATSVDVEEQ 1329
AR F +LDE T T +V E
Sbjct: 470 -----------------------------ARAFLRDAPLLLLDEPTAHLDAETEAEVLEA 500
Query: 1330 LYRLAKDMGITFVTSSQRPALIP 1352
L LA+ G T + + R AL
Sbjct: 501 LRALAQ--GRTVLLVTHRLALAA 521
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 9e-09
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 427 DKSPQRNGSRNYFSEANYIEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKS 485
+K Q N +R + + + FS + VTP +++N++ K+E G L + G GSGKS
Sbjct: 411 EKIKQNNKARKQPNGDDGLFFSNFSLYVTP----VLKNISFKLEKGQLLAVAGSTGSGKS 466
Query: 486 SLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP 545
SL ++ G G I G I + PQ + GT++D +I+ L+ D+
Sbjct: 467 SLLMMIMGELEPSEGKIKHSG-------RISFSPQTSWIMPGTIKDNIIFGLSYDEY--- 516
Query: 546 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAIL 602
++K LE + +P + + G+ LS G++ R+ +AR Y +L
Sbjct: 517 ----RYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLL 572
Query: 603 D 603
D
Sbjct: 573 D 573
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 9e-09
Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 26/200 (13%)
Query: 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN-KEIFYVPQR--- 521
L + G L + GPNG+GK++L R + GL P G + G + I YVPQR
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 522 ----PYTAVGTL---RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 574
P + T+ R I L + + + L+ V L L DR
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVAD---FAAVRDALRRVGLTELADRPV------ 111
Query: 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV---TTDMEERFCAKVRAMGTSCITI 631
ELS G++QR+ +AR +P +LDE + + T ++ ++ GT+ +
Sbjct: 112 --GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169
Query: 632 SHR-PALVAFHDVVLSLDGE 650
+H +A D V+ L+G
Sbjct: 170 THDLAQAMATCDRVVLLNGR 189
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 9e-09
Identities = 46/164 (28%), Positives = 68/164 (41%), Gaps = 41/164 (25%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG---------------HIAKP 505
+ ++L V G + + G NG+GK++L + + GL P SG A+
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARA 75
Query: 506 GVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNV--DLEY 562
G+G YVP+ + I+P LT + E L G LE
Sbjct: 76 GIG--------YVPE----------GRRIFPELTVE---ENLLLGAYARRRAKRKARLER 114
Query: 563 LLDRYPPEKEI--NWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+ + +P KE LS GEQQ L +AR +PK +LDE
Sbjct: 115 VYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCG 1173
R ++F I PG+SL + GP+GSGKS++ R++ GL SG + D
Sbjct: 19 RNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDH- 77
Query: 1174 IFYVPQRPYTCLGTLRDQI 1192
+ Y+PQ G++ + I
Sbjct: 78 VGYLPQDDELFSGSIAENI 96
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-08
Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 29/249 (11%)
Query: 411 DRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEP 470
+R+ ELM D Q+ G+ + ++ I+ V N++++N+ L V
Sbjct: 316 ERVFELM---------DGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPS 366
Query: 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG------VGSDLNKEIFYVPQRPYT 524
+ + G GSGKS+L +L G +PL G I G S L + + V Q P
Sbjct: 367 RGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV 426
Query: 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE---LSL 581
T + L D ++ + + L+ V L L P G++ LS+
Sbjct: 427 LADTFLANVT--LGRD-----ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV 479
Query: 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE---RFCAKVRAMGTSCITISHRPALV 638
G++Q L +AR+ P+ ILDE T+ + + E+ + A VR T+ + I+HR + +
Sbjct: 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREH-TTLVVIAHRLSTI 538
Query: 639 AFHDVVLSL 647
D +L L
Sbjct: 539 VEADTILVL 547
|
Length = 592 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 1e-08
Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 16/201 (7%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSS----LFRVL---GGLWPLVSGHIAKPGVGSD 510
++++ ++ + + G + I G G+GKSS LFR+ G + +IAK G+ D
Sbjct: 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGL-HD 1357
Query: 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-LEYLLDRYPP 569
L +I +PQ P G+LR L P + + E + L V L LD
Sbjct: 1358 LRFKITIIPQDPVLFSGSLRMNL-DPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECA 1416
Query: 570 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSC- 628
E G+ LS+G++Q + +AR K K +LDE T+AV + + + +R C
Sbjct: 1417 EG----GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCT 1472
Query: 629 -ITISHRPALVAFHDVVLSLD 648
+TI+HR + + V+ LD
Sbjct: 1473 VLTIAHRLNTIMDYTRVIVLD 1493
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 1e-08
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA---KVRAMGTSCITISHR 634
LS+GE+Q + +AR + ILDE T+A+T ER ++RA G + I ISHR
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 28/203 (13%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN---- 512
G ++V+ + + PGS + GPNGSGKS+L R+L G +G + G DL+
Sbjct: 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL--AGVDLHGLSR 70
Query: 513 ----KEIFYVPQRPYTAVG-TLRDQLIY---PLTSDQEVEPLTHGGMV-ELLKNVDLEYL 563
+ + V Q TAV T+RD + P S + +V L +L +L
Sbjct: 71 RARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL 130
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623
DR + LS GE+QR+ +AR +PK +LDE T+ + + A VR
Sbjct: 131 ADR-------DM-STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRE 182
Query: 624 MGTSCITISHRPALVAFHDVVLS 646
+ + +T+ + A HD+ L+
Sbjct: 183 LAATGVTV-----VAALHDLNLA 200
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-08
Identities = 69/276 (25%), Positives = 113/276 (40%), Gaps = 27/276 (9%)
Query: 390 FQSLGTLSISSRRLNRLSGYADRIHELMVISREL-SIEDKSPQRNGSRNYFSEANY---I 445
F TL I RL+++ + +++ E +ED P +
Sbjct: 278 FVGFATLLIG--RLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAV 335
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 505
EF V VE+++ + +PG + I GP G+GKS+L +L ++ SG I
Sbjct: 336 EFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID 395
Query: 506 GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKN 557
G + L + I V Q ++ D + P +D+E M +
Sbjct: 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEE--------MRAAAER 447
Query: 558 VDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
++R P + G+ +LS GE+QRL +AR P ILDE TSA+ + E
Sbjct: 448 AQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETE 507
Query: 615 ERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
+ A + + G + I+HR + V D +L D
Sbjct: 508 AKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFD 543
|
Length = 588 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 35/217 (16%)
Query: 438 YFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL 497
S IE GV + V+++ + L V G L I G +GSGKS+L R++ GL
Sbjct: 2 SASPEPLIEVRGV-TKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP 60
Query: 498 VSGHI-----AKPGVGSDLNKEIF----YVPQRP--YTAVGTLRDQLIYPLTSDQEV-EP 545
G I P + + EI + Q+ ++++ T+ + + +PL ++ E
Sbjct: 61 DKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSL-TVFENVAFPLREHTKLPES 119
Query: 546 LTHGGMVELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMAR--------LFYHK 596
L ++ L+ V L D YP ELS G ++R+ +AR LF +
Sbjct: 120 LIRELVLMKLELVGLRGAAADLYP--------SELSGGMRKRVALARAIALDPELLFLDE 171
Query: 597 PKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISH 633
P + LD ++ V ++ A+G + I ++H
Sbjct: 172 P-TSGLDPISAGVIDELIREL---NDALGLTVIMVTH 204
|
Length = 263 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 49/197 (24%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-----GSDLNK 513
+++NL+L+++ G + + G +GSGKS+L ++L G G I GV L+
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSS 75
Query: 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 573
I + QRPY TLR+
Sbjct: 76 LISVLNQRPYLFDTTLRN------------------------------------------ 93
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITI 631
N G S GE+QRL +AR+ +LDE T + E + + + + + I I
Sbjct: 94 NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWI 153
Query: 632 SHRPALVAFHDVVLSLD 648
+H + D +L L+
Sbjct: 154 THHLTGIEHMDKILFLE 170
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 2e-08
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 51/174 (29%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------------- 502
G +VE+++L V G + + GPNG+GK++ F ++ G+ P +G+I
Sbjct: 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA 74
Query: 503 -AKPGVGSDLNKEIFYVPQRP-----------YTAVGTLRDQLIYPLTSDQEVEPLTHGG 550
A+ G+G Y+PQ AV +RD L+++Q +
Sbjct: 75 RARRGIG--------YLPQEASIFRRLSVYDNLMAVLQIRDD----LSAEQREDR----- 117
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
EL++ +E+L D + G LS GE++R+ +AR PKF +LDE
Sbjct: 118 ANELMEEFHIEHLRD--------SMGQSLSGGERRRVEIARALAANPKFILLDE 163
|
Length = 241 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 18/46 (39%), Positives = 34/46 (73%)
Query: 1113 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
++L L+F + G++L++TGPNGSGK+++ R++ GL P +G++
Sbjct: 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK 60
|
Length = 207 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM---GTSCITISHR 634
+LS G++QR+ +AR P +LDE TS + ER +R + G + I ++H
Sbjct: 80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139
Query: 635 PALVAFH-DVVLSLD 648
P L D V+ L
Sbjct: 140 PELAELAADRVIVLK 154
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 4e-08
Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 27/222 (12%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------AKPGVGSDLN 512
++ L+ V P + + G G+GKSS+ L + L G I AK G+ +DL
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGL-TDLR 1309
Query: 513 KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP--PE 570
+ + +PQ P GT+R I P + + + E L+ ++ ++DR P +
Sbjct: 1310 RVLSIIPQSPVLFSGTVRFN-IDPFSEHND------ADLWEALERAHIKDVIDRNPFGLD 1362
Query: 571 KEINWGDE-LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSC- 628
E++ G E S+G++Q L +AR + K +LDE T++V + +R SC
Sbjct: 1363 AEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCT 1422
Query: 629 -ITISHRPALVAFHDVVLSLDGEGEWRVHD------KRDGSS 663
+ I+HR + D +L L G+ +D RD S+
Sbjct: 1423 MLVIAHRLNTIIDCDKILVLSS-GQVLEYDSPQELLSRDTSA 1463
|
Length = 1495 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-08
Identities = 60/249 (24%), Positives = 104/249 (41%), Gaps = 54/249 (21%)
Query: 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---------- 496
F GVK + + + L+V PG + + G NG+GKS+L ++L G++P
Sbjct: 11 FGGVKAL--------DGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYW 62
Query: 497 ----LVSGHIA---KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP--LTSDQEVEPLT 547
L + +I + G+ +++E+ VP+ L +++ P +
Sbjct: 63 SGSPLKASNIRDTERAGI-VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNA----- 116
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
M KN+ E LD + + + G+QQ + +A+ + + ILDE +S
Sbjct: 117 ---MYLRAKNLLRELQLDADNVTRPVG---DYGGGQQQLVEIAKALNKQARLLILDEPSS 170
Query: 608 AVTTDMEERFCAKVR---AMGTSCITISHRPALV-AFHDVVLSLDGEGEWRVHDKRDGSS 663
++T E +R A G +C+ ISH+ V A D + + RDG
Sbjct: 171 SLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVI-----------RDGQH 219
Query: 664 VVTKSGINM 672
V TK M
Sbjct: 220 VATKDMSTM 228
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 5e-08
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 1175
++ I PG+ + + GP+GSGKS++ ++L L+ SG + + +D E+ I
Sbjct: 21 VSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKN-IA 79
Query: 1176 YVPQRPYTCL--GTLRDQII 1193
YVPQ P+ L GT+R+ I+
Sbjct: 80 YVPQDPF--LFSGTIRENIL 97
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 5e-08
Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 64/162 (39%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IE + T G +L+++++L + PG + + G NG+GKS+L +++ G
Sbjct: 1 IELENLSK-TYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG----------- 48
Query: 505 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
E+EP G+V V + Y
Sbjct: 49 -------------------------------------ELEP--DEGIVTWGSTVKIGYF- 68
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
++LS GE+ RL +A+L P +LDE T
Sbjct: 69 ------------EQLSGGEKMRLALAKLLLENPNLLLLDEPT 98
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 6e-08
Identities = 64/265 (24%), Positives = 103/265 (38%), Gaps = 77/265 (29%)
Query: 1100 ISFSKLDIITP-SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
+S + I+ P +K R ++F + G++L + GP+GSGKS++ R++ G+WP SGS+
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376
Query: 1159 KPSQHID----EEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEK 1214
+ E G G Y+PQ GT+ + I +R K
Sbjct: 377 LDGADLKQWDRETFGKHIG--YLPQDVELFPGTVAENI----ARFGENADPEK------- 423
Query: 1215 LVDTTNILDSYLKTILEGVRLS---YLLEREEVGWDANLNWEDI-LSLGEQQRLGMVSHL 1270
I+E +L+ L+ R G+D + LS G++QR+ +
Sbjct: 424 --------------IIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIAL---- 465
Query: 1271 VLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQ- 1329
AR + PK +LDE N+ + EQ
Sbjct: 466 --------------------------------ARALYGDPKLVVLDE-PNSNLDEEGEQA 492
Query: 1330 LYRL---AKDMGITFVTSSQRPALI 1351
L K GIT V + RP+L+
Sbjct: 493 LANAIKALKARGITVVVITHRPSLL 517
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 6e-08
Identities = 50/192 (26%), Positives = 74/192 (38%), Gaps = 38/192 (19%)
Query: 428 KSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSL 487
K P GS N+F V+ +++ ++ G + G NG+GKS+
Sbjct: 18 KEPGLKGSLNHFFHRKERSIEAVQ-----------DISFEIPKGEIVGFLGANGAGKSTT 66
Query: 488 FRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEP 545
++L GL SG + G +E + R V + QL + P EV
Sbjct: 67 LKMLTGLLLPTSGKVRVNGKDPFRRREEY---LRSIGLVMGQKLQLWWDLPALDSLEVLK 123
Query: 546 L-----------THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594
L + E+L DLE L ++P K LSLG++ R +A
Sbjct: 124 LIYEIPDDEFAERLDFLTEIL---DLEGFL-KWPVRK-------LSLGQRMRAELAAALL 172
Query: 595 HKPKFAILDECT 606
H PK LDE T
Sbjct: 173 HPPKVLFLDEPT 184
|
Length = 325 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 7e-08
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 1175
++ I PG+ + + G GSGKS++ ++L GL+ GS+ + ID I
Sbjct: 484 VSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR-NIG 542
Query: 1176 YVPQRPYTCLGTLRDQIIY--PLSREEAELRALKLHG 1210
YVPQ P GTLRD I P + +E LRA +L G
Sbjct: 543 YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAG 579
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 7e-08
Identities = 53/242 (21%), Positives = 88/242 (36%), Gaps = 76/242 (31%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ ++ +I G+ + GP+G GKS++ R+L L ++ G + + +
Sbjct: 17 KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPG--APDEGEVLLDGKDIYDLDV 74
Query: 1177 VP-----------QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSY 1225
Q+P G++ D + Y L+LHG K LD
Sbjct: 75 DVLELRRRVGMVFQKPNPFPGSIYDNVAYG----------LRLHGIKLK-----EELDER 119
Query: 1226 LKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELD 1285
++ L L +EV L+ LS G+QQRL
Sbjct: 120 VEEALRKAALW-----DEV--KDRLHALG-LSGGQQQRL--------------------- 150
Query: 1286 WLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNA----TSVDVEEQLYRLAKDMGITF 1341
CL AR ++P+ +LDE T+A ++ +EE + L K+ I
Sbjct: 151 -----CL----------ARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVI 195
Query: 1342 VT 1343
VT
Sbjct: 196 VT 197
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 7e-08
Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 68/223 (30%)
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 505
F GVK + +N++LKV G + + G NG+GKS+L +VL G++P G
Sbjct: 14 TFGGVKAL--------DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP--HG----- 58
Query: 506 GVGSDLNKEIFYVPQRPYTAVGTLRDQ------LIYPLTSDQEV---------------E 544
EI + + A +RD +I+ QE+
Sbjct: 59 ----TYEGEIIFEGE-ELQA-SNIRDTERAGIAIIH-----QELALVKELSVLENIFLGN 107
Query: 545 PLTHGGMV----------ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594
+T GG++ +LL + L+ ++ P L LG+QQ + +A+
Sbjct: 108 EITPGGIMDYDAMYLRAQKLLAQLKLD--INPATPVG------NLGLGQQQLVEIAKALN 159
Query: 595 HKPKFAILDECTSAVT---TDMEERFCAKVRAMGTSCITISHR 634
+ + ILDE T+++T T + ++A G +CI ISH+
Sbjct: 160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHK 202
|
Length = 506 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 8e-08
Identities = 57/199 (28%), Positives = 86/199 (43%), Gaps = 32/199 (16%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD---------L 511
VE ++ + PG L + G +GSGKS+ R L L G I G D L
Sbjct: 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQAL 399
Query: 512 NKEIFYVPQRPYTAVG---TLRDQLIYPLTSDQEVEPLTHGG-----MVELLKNVDLEYL 563
++I ++ Q PY ++ T+ D ++ PL V L G + LL+ V L
Sbjct: 400 RRDIQFIFQDPYASLDPRQTVGDSIMEPL----RVHGLLPGKAAAARVAWLLERVGLL-- 453
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-- 621
PE + E S G++QR+ +AR PK I DE SA+ + + +
Sbjct: 454 -----PEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508
Query: 622 --RAMGTSCITISHRPALV 638
R G + + ISH A+V
Sbjct: 509 LQRDFGIAYLFISHDMAVV 527
|
Length = 623 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 8e-08
Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 29/192 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G V++++L + G + G +G GKS+L R+L G +G I GV DL+
Sbjct: 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGV--DLS---- 84
Query: 517 YVP--QRPYTAV---------GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD 565
+VP QRP + T+ + + L D+ + + E+L V ++
Sbjct: 85 HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK 144
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV---- 621
R P +LS G++QR+ +AR +PK +LDE A+ + +R +V
Sbjct: 145 RKP--------HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDIL 196
Query: 622 RAMGTSCITISH 633
+G +C+ ++H
Sbjct: 197 ERVGVTCVMVTH 208
|
Length = 377 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 9e-08
Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 48/211 (22%)
Query: 1065 RIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLA-RQLTFEI 1123
RI E+ E +P E++ + + Q S++ + + P Q + L+ +I
Sbjct: 313 RINEITE----QKP---EVTFPTTSTAAAD--QVSLTLNNVSFTYPDQPQPVLKGLSLQI 363
Query: 1124 VPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIFYVPQR 1180
G+ + + G G GKS++ ++L W G + +P E A I V QR
Sbjct: 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA-ISVVSQR 422
Query: 1181 PYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLE 1240
+ TLRD ++ L+ A D L +L+ V L LLE
Sbjct: 423 VHLFSATLRDNLL--LAAPNAS--------------------DEALIEVLQQVGLEKLLE 460
Query: 1241 REEVGWDANLNWEDI------LSLGEQQRLG 1265
++ G +A W + LS GEQ+RLG
Sbjct: 461 DDK-GLNA---W--LGEGGRQLSGGEQRRLG 485
|
Length = 574 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 9e-08
Identities = 53/214 (24%), Positives = 83/214 (38%), Gaps = 44/214 (20%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 518
V++++L L +E G I G +GSGKS+L ++G L SG + G +
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG---QETPPLNSK 68
Query: 519 PQRPYTAVGTLRDQLIY-----PLTSDQEVE-----PLTHGG---------MVELLKNVD 559
+ R++L Y L ++ VE L + E L+ V
Sbjct: 69 KASKF-----RREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG 123
Query: 560 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER--- 616
L L + ELS GEQQR+ +AR P + DE T ++ D + R
Sbjct: 124 LNLKLKQKI--------YELSGGEQQRVALARAILKPPPLILADEPTGSL--DPKNRDEV 173
Query: 617 ---FCAKVRAMGTSCITISHRPALVAFHDVVLSL 647
G + I ++H P + D V+ L
Sbjct: 174 LDLLLELNDE-GKTIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 9e-08
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 29/191 (15%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 518
V+ ++ V+PG + GPNG+GK++ R+L GL +G G D+ KE
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGF--DVVKEPAEA 76
Query: 519 PQRPYTAVGTLRDQL-IYP-LTSDQEVEPLT----------HGGMVELLKNVDLEYLLDR 566
+R +G + D +Y LT+ + +E + EL + +E LLDR
Sbjct: 77 RRR----LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR 132
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA---VTTDMEERFCAKVRA 623
S G +Q++ +AR H P +LDE T+ + T F ++RA
Sbjct: 133 R--------VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA 184
Query: 624 MGTSCITISHR 634
+G + +H
Sbjct: 185 LGKCILFSTHI 195
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 1e-07
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 30/160 (18%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG--I 1174
++ I G+ +L+ GPNGSGKS++ R+L GL SG + + + + + +
Sbjct: 18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKV 77
Query: 1175 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 1234
V Q P DQ P EE L+ G E+ ++ ++ LE V
Sbjct: 78 GLVFQNP-------DDQFFGPTVEEEVAF-GLENLGLPEEEIEER------VEEALELVG 123
Query: 1235 LSYLLEREEVGWDANLNWEDI--LSLGEQQRLGMVSHLVL 1272
L L +R LS G++QR+ + L +
Sbjct: 124 LEGLRDR------------SPFTLSGGQKQRVAIAGVLAM 151
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
+++++L ++ G + + GP+G+GKS+L R++ GL +G I + + ++ +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR---LNGRVLFDVSNLAV 74
Query: 521 RPYTAVG------------TLRDQLIYPLT------SDQEVEPLTHGGMVELLKNVDLEY 562
R VG T+ D + + L S+ E+ ELL+ V LE
Sbjct: 75 RD-RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE----ELLRLVQLEG 129
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA----VTTDMEERFC 618
L DRYP + LS G++QR+ +AR +PK +LDE A V ++ R+
Sbjct: 130 LADRYPAQ--------LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL-RRWL 180
Query: 619 AKVRA-MGTSCITISHRPA 636
K+ +G + + ++H
Sbjct: 181 RKLHDRLGVTTVFVTHDQE 199
|
Length = 345 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 1e-07
Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 37/213 (17%)
Query: 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
+E G+ P G V ++++L V+ G + G NG+GKS+L ++L GL+ SG I
Sbjct: 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 503 ------AKPGVGSDLNKE-IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 555
+ D + I V Q L+ LT E + G
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHF---------MLVPTLTV---AENIILGLEPSKG 109
Query: 556 KNVD-------LEYLLDRY----PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+D ++ L +RY P+ ++ +LS+GEQQR+ + + Y + ILDE
Sbjct: 110 GLIDRRQARARIKELSERYGLPVDPDAKVA---DLSVGEQQRVEILKALYRGARLLILDE 166
Query: 605 CTSAVTTDMEERFCAKVR---AMGTSCITISHR 634
T+ +T + +R A G + I I+H+
Sbjct: 167 PTAVLTPQEADELFEILRRLAAEGKTIIFITHK 199
|
Length = 501 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 42/193 (21%), Positives = 72/193 (37%), Gaps = 44/193 (22%)
Query: 440 SEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499
+ + G +E+++L + G +++ GP+G GK++L ++ G
Sbjct: 6 VSHLSLSYEGK------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR 59
Query: 500 GHIAKPGVGSDLNKEIFYVPQRPYTAVGTLR------DQLIYPLTSDQEVE-PLTHGGM- 551
G I G R G R + L+ L V L G+
Sbjct: 60 GSIQLNG--------------RRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIE 105
Query: 552 --------VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILD 603
++L V LE +Y W +LS G +QR+G+AR +P+ +LD
Sbjct: 106 KAQRREIAHQMLALVGLEGAEHKYI------W--QLSGGMRQRVGIARALAVEPQLLLLD 157
Query: 604 ECTSAVTTDMEER 616
E A+ E+
Sbjct: 158 EPFGALDALTREQ 170
|
Length = 259 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 48/153 (31%), Positives = 68/153 (44%), Gaps = 23/153 (15%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSDLNKEIFY 517
V N++L V S + GPNG+GKS+L +++ G+ SG I P DL+K
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSL 75
Query: 518 VPQRPYTAVGTLRDQLIYPLT----SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 573
+ P T R+ L T D ++ E+L VDL + K
Sbjct: 76 IESPPLYENLTARENLKVHTTLLGLPDSRID--------EVLNIVDLTNTGKK--KAK-- 123
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
+ SLG +QRLG+A + PK ILDE T
Sbjct: 124 ----QFSLGMKQRLGIAIALLNHPKLLILDEPT 152
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 50/196 (25%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-SDLNK 513
G +++ + L ++ G + GPNGSGKS+L + + G + + G I G +DL
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71
Query: 514 E------IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRY 567
E IF Q P E+ + + L+ V+
Sbjct: 72 EERARLGIFLAFQYPP------------------EIPGVK---NADFLRYVN-------- 102
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD---MEERFCAKVRAM 624
+ S GE++R + +L +P AILDE S + D + K+R
Sbjct: 103 ---------EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE 153
Query: 625 GTSCITISHRPALVAF 640
G S + I+H L+ +
Sbjct: 154 GKSVLIITHYQRLLDY 169
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 1e-07
Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 39/174 (22%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSD 510
G L+++++L + PG + I GPNG+GKS+L R L G SG + G ++
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAE 73
Query: 511 LNKEIFYVPQR-----PYTA---VGTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLE 561
L + +PQ P+T V R P S E + L L VDL
Sbjct: 74 LARRRAVLPQHSSLSFPFTVEEVVAMGR----APHGLSRAEDDALVA----AALAQVDLA 125
Query: 562 YLLDR-YPPEKEINWGDELSLGEQQRLGMARLF------YHKPKFAILDECTSA 608
+L R YP +LS GEQQR+ +AR+ P++ +LDE TSA
Sbjct: 126 HLAGRDYP---------QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSA 170
|
Length = 258 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 28/163 (17%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIA----------KPGVGSD 510
++TL G L++ GP+G+GKSSL RVL L SG +IA +
Sbjct: 20 DITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79
Query: 511 LNKEIFYVPQR----PYTAVGTLRDQLI-YPLTSDQEVEPLTHGGMVELLKNVDLEYLLD 565
L + + V Q+ P+ T++ LI P + +LL+ + L+ D
Sbjct: 80 LRRNVGMVFQQYNLWPHL---TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD 136
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
R+P LS G+QQR+ +AR +P+ + DE T+A
Sbjct: 137 RFPLH--------LSGGQQQRVAIARALMMEPQVLLFDEPTAA 171
|
Length = 242 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 34/160 (21%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE-------- 514
++L+V G + G NG GK++L + L GL P+ SG I G D+ K
Sbjct: 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGE--DITKLPPHERARA 75
Query: 515 -IFYVPQRPYTAVGTLRDQLIYPLTSDQE-----VEPLTHGGMVELLKNVDLEYLLDRYP 568
I YVPQ + I+P + +E + L + + + + + +P
Sbjct: 76 GIAYVPQ----------GREIFPRLTVEENLLTGLAALPRRS-----RKIP-DEIYELFP 119
Query: 569 PEKEI--NWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
KE+ G +LS G+QQ+L +AR +PK +LDE T
Sbjct: 120 VLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 1115 LARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGS 1170
L L+F + G++L VTGPNG GK+++ R+L GL SG + + E+
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDE 70
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 2e-07
Identities = 55/256 (21%), Positives = 107/256 (41%), Gaps = 35/256 (13%)
Query: 358 FFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELM 417
G+L P + + LR +++ +L + ++S +R+ L +RI
Sbjct: 547 LLGGDLTP-ARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERI---- 601
Query: 418 VISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 477
+++ ++ +P + YFS K PT + ++ L++ GS + I
Sbjct: 602 -LAQNPPLQPGAPAISIKNGYFS-------WDSKTSKPT----LSDINLEIPVGSLVAIV 649
Query: 478 GPNGSGKSSLFR-VLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP 536
G G GK+SL +LG L + + + + YVPQ + T+R+ +++
Sbjct: 650 GGTGEGKTSLISAMLGELSHAETSSV-------VIRGSVAYVPQVSWIFNATVRENILF- 701
Query: 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLF 593
+ E + +++ L++ LD P G+ +S G++QR+ MAR
Sbjct: 702 ---GSDFESERYWRAIDV---TALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755
Query: 594 YHKPKFAILDECTSAV 609
Y I D+ SA+
Sbjct: 756 YSNSDIYIFDDPLSAL 771
|
Length = 1495 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 32/213 (15%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKS-SLFRVLGGLWP---LVSGHIAKPGVGSDLN--- 512
LV++L L ++ G L + G +GSGKS + +LG L P SG I G L
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGR--PLLPLS 58
Query: 513 ---KEIFYVPQRPYTA---VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL---EYL 563
+ I + Q P TA + T+ + I L S ++ ++E L+ V L E +
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEV 118
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623
L +YP +LS G QR+ +A +P F I DE T+ + + R +R
Sbjct: 119 LKKYP--------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 624 M----GTSCITISHRPALVAF--HDVVLSLDGE 650
+ GT + I+H +VA +V + DG
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGR 203
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 2e-07
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 40/212 (18%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IE G+ + G +++ + L V G L I GP+GSGKS+L R++ GL SG +
Sbjct: 1 IELRGL-TKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59
Query: 505 PG--VGSDLNKEIFYVPQRPYTAVG------------TLRDQLIYPLT-----SDQEVEP 545
G + E++ + +R +G T+ + + +PL S++E+
Sbjct: 60 DGEDISGLSEAELYRLRRR----MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIRE 115
Query: 546 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605
+ +E L+ V L D YP ELS G ++R+ +AR P+ + DE
Sbjct: 116 IV----LEKLEAVGLRGAEDLYP--------AELSGGMKKRVALARALALDPELLLYDEP 163
Query: 606 TSA---VTTDMEERFCAKV-RAMGTSCITISH 633
T+ + + + + + + +G + I ++H
Sbjct: 164 TAGLDPIASGVIDDLIRSLKKELGLTSIMVTH 195
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 41/192 (21%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
++ L V G + + GP+GSGKS++ R+L L P+ G I G ++++++P
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEG------EQLYHMPG 69
Query: 521 R-----PYTA--VGTLRDQL--------IYPLTS--DQEVE-PLTHGGM---------VE 553
R P + +R+++ ++P + D E P+ GM +E
Sbjct: 70 RNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAME 129
Query: 554 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
LL V L D P +LS G+QQR+ +AR +PK + DE TSA+ ++
Sbjct: 130 LLDMVGLADKADHMPA--------QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPEL 181
Query: 614 EERFCAKVRAMG 625
+R +
Sbjct: 182 VGEVLNVIRRLA 193
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 29/209 (13%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKE 514
+ +++ V+ G L I G NGSGKS+ R++ GL SG I G D+ +
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82
Query: 515 IFYVPQRPYTA-VG-TLRDQLIYPLTSDQEVEPLTHGGMV----ELLKNVDLEYLLDRYP 568
I V Q P VG T+ D + + L E + + H M E L+ V ++ +R P
Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAFGL----ENKGIPHEEMKERVNEALELVGMQDFKEREP 138
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM---- 624
LS G++QR+ +A +PK ILDE TS + + ++ +
Sbjct: 139 A--------RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDY 190
Query: 625 GTSCITISHRPALVAFHDVVLSL-DGEGE 652
+ I+I+H VA D VL + +G+ E
Sbjct: 191 QMTVISITHDLDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 45/223 (20%), Positives = 72/223 (32%), Gaps = 78/223 (34%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC------ 1172
+ F I PG+++ + GP G+GK+++ +L + G + ID
Sbjct: 22 INFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL-----IDGIDIRDISRKSLR 76
Query: 1173 -GIFYVPQRPYTCLGTLRDQIIY--PLSREEAELRALKLHGKGEKLVDTTNILDSYLKTI 1229
I V Q + GT+ + I P + +E + A K
Sbjct: 77 SMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKE--------------------- 115
Query: 1230 LEGVRLSYLLEREEVGWDANLNWE-DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLI 1288
+ + G+D L LS GE+Q L +
Sbjct: 116 ---AGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAI---------------------- 150
Query: 1289 YCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVE-EQL 1330
AR PK ILDE T +++D E E+L
Sbjct: 151 --------------ARAMLRDPKILILDEAT--SNIDTETEKL 177
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 3e-07
Identities = 62/240 (25%), Positives = 90/240 (37%), Gaps = 83/240 (34%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178
++FE+ PG+ L + GPNG+GKS++ + + GL SGS+ + +++E I YVP
Sbjct: 18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKR---IGYVP 74
Query: 1179 QRPYTCLGTLRDQIIYPLSREE-------AELRALKLHGKGEK-LVDTTNILDSYLKTIL 1230
QR RD +P+S + + K +K VD L
Sbjct: 75 QR----RSIDRD---FPISVRDVVLMGLYGHKGLFRRLSKADKAKVD----------EAL 117
Query: 1231 EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYC 1290
E V LS L +R + LS G+QQR VL+
Sbjct: 118 ERVGLSELADR-------QI---GELSGGQQQR-------VLL----------------- 143
Query: 1291 CLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDV--EEQLYRL-----AKDMGITFVT 1343
AR P +LDE VD +E +Y L + M I VT
Sbjct: 144 ------------ARALVQDPDLLLLDEPF--AGVDPKTQEDIYELLRELRREGMTILVVT 189
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 3e-07
Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 32/201 (15%)
Query: 1069 LEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKS 1128
+ E+LDAA P + GS+ + ++ L P + ++ ++ PG+
Sbjct: 307 IVEVLDAAGPVAE---GSAPAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGER 363
Query: 1129 LLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIFYVPQRPYTCL 1185
+ + GP+GSGKS++ L GL + G +T P +D++ + Q +
Sbjct: 364 VAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRR-VSVCAQDAHLFD 422
Query: 1186 GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVG 1245
T+R+ + L+R +A D L LE V L+ L G
Sbjct: 423 TTVRENLR--LARPDAT--------------------DEELWAALERVGLADWLRALPDG 460
Query: 1246 WDANLNWED--ILSLGEQQRL 1264
D L E LS GE+QRL
Sbjct: 461 LDTVLG-EGGARLSGGERQRL 480
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCG 1173
++ + G+ + + GPNGSGKS++ R + GL SG + K + E
Sbjct: 16 DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRR-R 74
Query: 1174 IFYVPQ 1179
I YVPQ
Sbjct: 75 IGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-07
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 36/190 (18%)
Query: 465 TLKVEPGSN-----LLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP 519
L+VE G + I GPNG GK++ ++L G+ KP GS+ + ++ Y P
Sbjct: 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGV--------IKPDEGSEEDLKVSYKP 407
Query: 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 578
Q GT+ L+ E++K ++LE LL+R DE
Sbjct: 408 QYISPDYDGTVE-DLLRSAIRSAFGSSYFK---TEIVKPLNLEDLLERPV--------DE 455
Query: 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF-CAKV--RAMGTSCITISHRP 635
LS GE QR+ +A + +LDE ++ + D+E+R AKV R + + T
Sbjct: 456 LSGGELQRVAIAAALSREADLYLLDEPSAYL--DVEQRIIVAKVIRRFIENNEKT----- 508
Query: 636 ALVAFHDVVL 645
ALV HD+ +
Sbjct: 509 ALVVDHDIYM 518
|
Length = 591 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 29/192 (15%)
Query: 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN------------K 513
L V+ G + + G +GSGKS+L +L GL SG ++ VG L+ K
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSL--VGQPLHQMDEEARAKLRAK 88
Query: 514 EIFYVPQRPYTAVGTL--RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEK 571
+ +V Q + + TL + + P E + G LL+ + L LD P +
Sbjct: 89 HVGFVFQS-FMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQ- 146
Query: 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV----RAMGTS 627
LS GEQQR+ +AR F +P DE T + ++ + R GT+
Sbjct: 147 -------LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTT 199
Query: 628 CITISHRPALVA 639
I ++H L A
Sbjct: 200 LILVTHDLQLAA 211
|
Length = 228 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 45/217 (20%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKE----- 514
+ N++L ++ G + + G +G GKS+L R+L GL G+++ G + LN+
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAF 87
Query: 515 ---IFYVPQRPYTAVG---TLRDQLIYP---LTSDQEVEPLTHGGMVELLKNVDL-EYLL 564
I V Q +AV T+R+ + P L S + E L E+L+ VDL + +L
Sbjct: 88 RRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARAS--EMLRAVDLDDSVL 145
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS-----------AVTTDM 613
D+ PP +LS G+ QR+ +AR +PK ILDE S + +
Sbjct: 146 DKRPP--------QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKL 197
Query: 614 EERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDG 649
+++F GT+C+ I+H LV F V+ +D
Sbjct: 198 QQQF-------GTACLFITHDLRLVERFCQRVMVMDN 227
|
Length = 268 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 4e-07
Identities = 54/211 (25%), Positives = 84/211 (39%), Gaps = 42/211 (19%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------------- 502
G V +++L+V PG + + GPNG+GK++LF ++ G + SG +
Sbjct: 16 GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHR 75
Query: 503 -AKPGVG-SDLNKEIF---------YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551
A+ G+ + +F V L L P +E E
Sbjct: 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARL---GLSGLLGRPRARKEEREARERAR- 131
Query: 552 VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTT 611
ELL+ V L L DR LS G+Q+RL +AR +PK +LDE + +
Sbjct: 132 -ELLEFVGLGELADRP--------AGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNP 182
Query: 612 DMEERFCAKVRA----MGTSCITISHRPALV 638
+ E +R G + + I H LV
Sbjct: 183 EETEELAELIRELRDRGGVTILLIEHDMKLV 213
|
Length = 250 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-07
Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 38/176 (21%)
Query: 456 TGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-AKPGVGS-DL- 511
TG VL V N +L +E G ++ G +GSGKS+L R + GL P+ G + K G GS D+
Sbjct: 34 TGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVA 93
Query: 512 -----------NKEIFYVPQR----PYTAVGTLRDQLIYPL----TSDQEVEPLTHGGMV 552
+ V Q+ P+ T+ + + + L E
Sbjct: 94 NCDAATLRRLRTHRVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKRVD---- 146
Query: 553 ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
E L+ V L DR P ELS G QQR+G+AR F + ++DE SA
Sbjct: 147 EQLELVGLAQWADRKP--------GELSGGMQQRVGLARAFATEAPILLMDEPFSA 194
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 19/194 (9%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--DLNK----E 514
++N++L V G + ++GP+G+GKS+L + L + SG I G+ DL + E
Sbjct: 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPRE 83
Query: 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEV--EPLTHGGMVELLKNVDLEYLLDRYP-PEK 571
+ V ++ V + P S EV EPL G+ LL R PE+
Sbjct: 84 VLEVRRKTIGYVSQFLRVI--PRVSALEVVAEPLLERGVPREAARARARELLARLNIPER 141
Query: 572 EINWG---DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER---FCAKVRAMG 625
W S GEQQR+ +AR F +LDE T+++ + A+ +A G
Sbjct: 142 L--WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARG 199
Query: 626 TSCITISHRPALVA 639
+ I I H +
Sbjct: 200 AALIGIFHDEEVRE 213
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 4e-07
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 44/210 (20%)
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI--- 502
F GVK + +N+ LKV P S + G NG+GKS+L + L G++ SG I
Sbjct: 7 SFPGVKAL--------DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQ 58
Query: 503 AKP------------GVGSDLNKEIFYVPQRPYTAVGTLRDQLI---YPLTSDQEVEPLT 547
K G+ S +++E+ V QR ++ D + YP +
Sbjct: 59 GKEIDFKSSKEALENGI-SMVHQELNLVLQR------SVMDNMWLGRYPTKG----MFVD 107
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
M K + E +D P K LS+ + Q + +A+ F + K I+DE TS
Sbjct: 108 QDKMYRDTKAIFDELDIDIDPRAKVAT----LSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163
Query: 608 AVT-TDMEERF--CAKVRAMGTSCITISHR 634
++T ++ F K++ G + ISH+
Sbjct: 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHK 193
|
Length = 491 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 4e-07
Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 28/240 (11%)
Query: 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVEN-LTLKVEPGSNLLITGPNGSG 483
IE SP +A + F GV++ G LV ++ ++ P + I G GSG
Sbjct: 1291 IEPASPTSAAPHPV--QAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSG 1348
Query: 484 KSSLFRVLGGLWPLVSGHIAKPG--VGS----DLNKEIFYVPQRPYTAVGTLRDQLIYPL 537
KS+L + + G I G +G+ +L ++ +PQ P GT+R
Sbjct: 1349 KSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR------- 1401
Query: 538 TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE------INWGDELSLGEQQRLGMAR 591
Q V+P E+ ++L L +R E E + G S+G++Q + MAR
Sbjct: 1402 ---QNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMAR 1458
Query: 592 LFYHK-PKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
K F ++DE T+ + ++ + A V + + ITI+HR VA +D ++ +D
Sbjct: 1459 ALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMD 1518
|
Length = 1560 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 52/172 (30%), Positives = 74/172 (43%), Gaps = 31/172 (18%)
Query: 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GS 509
G L++ ++L + PG L I GPNG+GKS+L + L G SG + GV
Sbjct: 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPE 71
Query: 510 DLNKEIFYVPQR-----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE-LLKNVDLEYL 563
+L + +PQ P+T ++ I P S + EP + L DL L
Sbjct: 72 ELARHRAVLPQNSSLAFPFTVQEVVQMGRI-PHRSGR--EPEEDERIAAQALAATDLSGL 128
Query: 564 LDR-YPPEKEINWGDELSLGEQQRLGMARLFYH------KPKFAILDECTSA 608
R Y LS GEQQR+ +AR+ ++ LDE TSA
Sbjct: 129 AGRDYR---------TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171
|
Length = 259 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 28/178 (15%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+E +K P G ++ + K E G + + GPNG+GKS+LF G+ SG +
Sbjct: 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLI 61
Query: 505 PGVGSDL-NKEIFYVPQRPYTAVGTL----RDQLIYPLTSDQEVE--PLTHG-------- 549
G K + V + VG + DQL P T +++V PL G
Sbjct: 62 KGEPIKYDKKSLLEVRKT----VGIVFQNPDDQLFAP-TVEEDVAFGPLNLGLSKEEVEK 116
Query: 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
+ E LK V +E + PP LS G+++R+ +A + KP+ +LDE TS
Sbjct: 117 RVKEALKAVGMEG-FENKPPH-------HLSGGQKKRVAIAGILAMKPEIIVLDEPTS 166
|
Length = 275 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 47/232 (20%), Positives = 85/232 (36%), Gaps = 63/232 (27%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178
++ + G+ + GPNG+GKS++ + + GL SG + + + + I YVP
Sbjct: 23 ISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLR-IGYVP 81
Query: 1179 QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 1238
Q+ R +P++ + ++ L +GK + LE V + L
Sbjct: 82 QK----SSVDRS---FPITVK--DVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDL 132
Query: 1239 LEREEVGWDANLNWEDI--LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFF 1296
+R+ I LS G++QR VL+
Sbjct: 133 RDRQ------------IGELSGGQKQR-------VLL----------------------- 150
Query: 1297 PPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDM---GITFVTSS 1345
AR P +LDE V ++++Y L K++ G T + +
Sbjct: 151 ------ARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVT 196
|
Length = 254 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 6e-07
Identities = 44/213 (20%), Positives = 87/213 (40%), Gaps = 34/213 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
N ++++L+L++E G L + G +G GK++L R + G +G + + ++++
Sbjct: 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-AAGLTGRIAIA---DRDLT 72
Query: 517 YVPQRPYT-AVG------------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL 563
+ P P+ + + D + + L + + + + + LK V L
Sbjct: 73 HAP--PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDA 130
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623
P + LS G QQR+ +AR +P +LDE SA+ ++ ++ A
Sbjct: 131 AAHLPAQ--------LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAA 182
Query: 624 MGTS-------CITISHRPALVAFHDVVLSLDG 649
+ C+T AL + DG
Sbjct: 183 LHEELPELTILCVTHDQDDALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 6e-07
Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 38/193 (19%)
Query: 476 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VGSDLNKEIFYVPQRPYTAVG------- 527
I G +GSGK++L R++ GL G I G D K IF P++ +G
Sbjct: 28 IFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK--RRIGYVFQEAR 85
Query: 528 -----TLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSL 581
++R L Y + + ++ ++ELL + +LL R P LS
Sbjct: 86 LFPHLSVRGNLRYGMKRARPSERRISFERVIELL---GIGHLLGRLP--------GRLSG 134
Query: 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER-----FCAKVRA-MGTSCITISHRP 635
GE+QR+ + R P+ ++DE +A+ D + + ++ A G + +SH
Sbjct: 135 GEKQRVAIGRALLSSPRLLLMDEPLAAL--DDPRKYEILPYLERLHAEFGIPILYVSHSL 192
Query: 636 ---ALVAFHDVVL 645
+A VVL
Sbjct: 193 QEVLRLADRVVVL 205
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 7e-07
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 29/160 (18%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV----GSDLNK 513
N +++NL L ++ G+ + + GP+G GK+++ R++ GL G I G S +
Sbjct: 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78
Query: 514 EIFYVPQR----PYTAVGT-----LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
+I V Q P+ ++G L+ + Q V+ E L+ VDL
Sbjct: 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVK--------EALELVDLAGFE 130
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
DRY D++S G+QQR+ +AR KPK + DE
Sbjct: 131 DRYV--------DQISGGQQQRVALARALILKPKVLLFDE 162
|
Length = 351 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 9e-07
Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 41/164 (25%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 1175
++ EI G+ +L+ GPNGSGKS++ ++L GL SG + + +
Sbjct: 23 VSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82
Query: 1176 YVPQRPYT--CLGTLRDQIIY-----PLSREEAELRALKLHGKGEKLVDTTNILDSYLKT 1228
V Q P T+ D++ + L REE E R
Sbjct: 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERV---------------------AE 121
Query: 1229 ILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVL 1272
LE V L LL+R LS G++QR+ + L +
Sbjct: 122 ALELVGLEELLDR----------PPFNLSGGQKQRVAIAGVLAM 155
|
Length = 235 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 9e-07
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ + E+ G+ + + GP GSGKSS+ L G +SGS++ P I Y
Sbjct: 22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-----------SIAY 70
Query: 1177 VPQRPYTCLGTLRDQII 1193
V Q P+ GT+R+ I+
Sbjct: 71 VSQEPWIQNGTIRENIL 87
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 25/169 (14%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP------LVSGHIAKPGVGSDLNKE 514
V+ ++ + G L I G NGSGKS+L ++L G+ L++ H G S +K
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 515 IFYVPQRPYTA------VGTLRDQLIYPLTSDQEVEPLTHGGMV-ELLKNVDLEYLLDRY 567
I + Q P T+ +G + D +PL + ++EP + E L+ V L
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILD---FPLRLNTDLEPEQRRKQIFETLRMVGL------L 139
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
P L+ G++QR+ +AR +PK I DE +++ DM R
Sbjct: 140 PDHANYY-PHMLAPGQKQRVALARALILRPKIIIADEALASL--DMSMR 185
|
Length = 267 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-06
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 33/180 (18%)
Query: 445 IEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I+ V + N ++N++ ++ G + I G NGSGKS++ ++L GL SG I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 504 KPGVGSDLNKE-----------IFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGM 551
G+ ++KE IF P + +G T+ D + + L E + + M
Sbjct: 68 IDGI--TISKENLKEIRKKIGIIFQNPDNQF--IGATVEDDIAFGL----ENKKVPPKKM 119
Query: 552 ----VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
+L K V +E LD+ P LS G++QR+ +A + P+ I DE TS
Sbjct: 120 KDIIDDLAKKVGMEDYLDKEP--------QNLSGGQKQRVAIASVLALNPEIIIFDESTS 171
|
Length = 271 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 28/187 (14%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA--KPGVGSDL---NKE 514
L++ ++ + G L + G NG+GK++L +++ GL G I + + DL K+
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75
Query: 515 IFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
+ +V R PY TLR+ +Y + G+ EL + LE+L+D YP
Sbjct: 76 LCFVGHRSGINPYL---TLRENCLYDIHFSP-----GAVGITELCRLFSLEHLID-YP-- 124
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV---RAMGTS 627
LS G+++++ + RL+ K K +LDE A+ K+ RA G +
Sbjct: 125 -----CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 628 CITISHR 634
+ SH+
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 42/170 (24%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIAKPGVGSDLNKE 514
V ++ +V G + GPNG+GK++ ++L L SG +A G D+ +E
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA----GHDVVRE 67
Query: 515 -------IFYVPQRPYTAVGTLRDQL-----------IYPLTSDQEVEPLTHGGMVELLK 556
I V Q ++ D+L +Y + + E + ELL
Sbjct: 68 PREVRRRIGIVFQDL-----SVDDELTGWENLYIHARLYGVPGAERRERID-----ELLD 117
Query: 557 NVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
V L DR S G ++RL +AR H+P+ LDE T
Sbjct: 118 FVGLLEAADRLV--------KTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-06
Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 26/155 (16%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFR-VLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521
N+ L V GS + I G G GK+SL +LG L P + G + YVPQ
Sbjct: 635 NINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG-------TVAYVPQV 687
Query: 522 PYTAVGTLRDQLIYPLTSDQE-------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 574
+ T+RD +++ D E V L H ++LL DL + +R
Sbjct: 688 SWIFNATVRDNILFGSPFDPERYERAIDVTALQHD--LDLLPGGDLTEIGER-------- 737
Query: 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
G +S G++QR+ MAR Y I D+ SA+
Sbjct: 738 -GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771
|
Length = 1622 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 30/161 (18%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DLNKEI 515
++ ++ + + G + GPNG+GKS+ +++ G P SG + G ++ + I
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNI 77
Query: 516 FYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPL----THGGMVELLKNVDLEYLLDR--YP 568
Y+P+ PL D V E L GM L +E +++
Sbjct: 78 GYLPEHN-------------PLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR 124
Query: 569 PE--KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
PE K+I +LS G +QR+G+A+ H PK ILDE T+
Sbjct: 125 PEQHKKIG---QLSKGYRQRVGLAQALIHDPKVLILDEPTT 162
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 1100 ISFSKLDIITP-SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS 1156
+S +L P +K + + ++F + G++L + GP+GSGKS++ R+L G+WP SGS
Sbjct: 335 LSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGS 392
|
Length = 580 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 1112 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGS 1170
++ L L+F + G++L +TGPNG+GK+++ R+L GL +G + + I S
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES 72
|
Length = 209 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-06
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 23/166 (13%)
Query: 454 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS--GHIAKPGVGSD- 510
T G ++++L+ VE G + + G GSGKS+L L L L+S G I GV +
Sbjct: 1228 TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTL---LSALLRLLSTEGEIQIDGVSWNS 1284
Query: 511 -----LNKEIFYVPQRPYTAVGTLRDQL-IYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
K +PQ+ + GT R L Y SD+E+ + + V L+ ++
Sbjct: 1285 VTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVA--------EEVGLKSVI 1336
Query: 565 DRYPPEKE---INWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
+++P + + ++ G LS G +Q + +AR K K +LDE ++
Sbjct: 1337 EQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSA 1382
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-06
Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 43/240 (17%)
Query: 379 LRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL---SIEDKSPQRNGS 435
LR+ +++ + S+ S+S +RL + + EL SIE + + G
Sbjct: 586 LRFPLNILPMVISSIVQASVSLKRL-----------RIFLSHEELEPDSIERR-TIKPGE 633
Query: 436 RNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW 495
N + N F+ + + PT N +T + G+ + + G G GKSSL L
Sbjct: 634 GNSITVHN-ATFTWARDLPPTLN----GITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 688
Query: 496 PLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE-- 553
V GH+ G + YVPQ+ + +LR+ +++ + + + ++E
Sbjct: 689 DKVEGHVHMKG-------SVAYVPQQAWIQNDSLRENILF----GKALNEKYYQQVLEAC 737
Query: 554 -LLKNVDLEYLL--DRYP-PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
LL DLE L DR EK +N LS G++QR+ +AR Y + D+ SAV
Sbjct: 738 ALLP--DLEILPSGDRTEIGEKGVN----LSGGQKQRVSLARAVYSNADIYLFDDPLSAV 791
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 28/186 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---------AKP-- 505
G ++ + L+V+PG + I GP+GSGK++L R + L +G I A+
Sbjct: 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLS 74
Query: 506 ---GVGSDLNKEIFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558
G+ L + + +V Q P+ V L + + P+ E + ELL V
Sbjct: 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTV--LENIIEGPVIVKGEPKEEATARARELLAKV 132
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC 618
L YP LS G+QQR+ +AR +P+ + DE TSA+ ++
Sbjct: 133 GLAGKETSYP--------RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 619 AKVRAM 624
+R +
Sbjct: 185 NTIRQL 190
|
Length = 250 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 19/161 (11%)
Query: 454 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD--- 510
T GN ++EN++ + PG + + G GSGKS+L L G I GV +
Sbjct: 13 TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVP 71
Query: 511 ---LNKEIFYVPQRPYTAVGTLRDQL-IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
K +PQ+ + GT R L Y SD+E+ + + V L+ ++++
Sbjct: 72 LQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVA--------EEVGLKSVIEQ 123
Query: 567 YPPEKE---INWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+P + + ++ G LS G +Q + +AR K K +LDE
Sbjct: 124 FPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE 164
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 47/211 (22%)
Query: 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG 506
F GVK + L V PG + + G NG+GKS++ +VL G++ +G I
Sbjct: 14 FPGVKAL--------SGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY-- 63
Query: 507 VGSDLNKEI-FYVPQRPYTA-VGTLRDQL--IYPLTSDQEV----EPLTHGGMVE----- 553
L KE+ F P+ A +G + +L I LT + + E + G ++
Sbjct: 64 ----LGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMY 119
Query: 554 -----LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
LL ++L R+ +K + ELS+GEQQ + +A++ + K I+DE T A
Sbjct: 120 AEADKLLARLNL-----RFSSDKLVG---ELSIGEQQMVEIAKVLSFESKVIIMDEPTDA 171
Query: 609 VT-TDMEERFCAKV----RAMGTSCITISHR 634
+T T+ E F +V ++ G + ISHR
Sbjct: 172 LTDTETESLF--RVIRELKSQGRGIVYISHR 200
|
Length = 501 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 38/206 (18%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN-KEIFYVP 519
V+ ++ +E G L + G +GSGKS + GL P S A P + +++
Sbjct: 26 VKGISFDIEAGETLALVGESGSGKSVTALSILGLLP--SPAAAHPSGSILFDGEDLLAAS 83
Query: 520 QRPYTAVGTLRDQLIY--PLTS--------DQEVEPLT-HGGM---------VELLKNVD 559
+R V + +I+ P+TS Q E L H G+ +ELL+ V
Sbjct: 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVG 143
Query: 560 L---EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTTDME 614
+ E LD YP ELS G++QR+ +A ++P I DE T+A VT +
Sbjct: 144 IPEPEKRLDAYP--------HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQ 195
Query: 615 --ERFCAKVRAMGTSCITISHRPALV 638
+ +G + + I+H +V
Sbjct: 196 ILDLLKELQAELGMAILFITHDLGIV 221
|
Length = 534 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 36/167 (21%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH-------IAKPGVGSDLNK 513
+ N+ S + + GPNG+GKS+LFR G+ SG I K + ++ K
Sbjct: 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENI-REVRK 78
Query: 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-----------EPLTHGGMVELLKNVDLEY 562
+ V Q P D I+ T +Q++ E + H + L + LE
Sbjct: 79 FVGLVFQNP--------DDQIFSPTVEQDIAFGPINLGLDEETVAH-RVSSALHMLGLEE 129
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
L DR P LS GE++R+ +A + +P+ +LDE T+ +
Sbjct: 130 LRDRVP--------HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGL 168
|
Length = 277 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 3e-06
Identities = 50/237 (21%), Positives = 83/237 (35%), Gaps = 97/237 (40%)
Query: 1112 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG 1171
+ + L+ I G+ + + GPNG+GKS++ + L GL SG +
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI-------------- 56
Query: 1172 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 1231
L + + LS +E A K+ +Y+ LE
Sbjct: 57 ---------------LLDGKDLASLSPKE---LARKI---------------AYVPQALE 83
Query: 1232 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCC 1291
+ L++L +R + + LS GE+QR VL+
Sbjct: 84 LLGLAHLADR---------PFNE-LSGGERQR-------VLL------------------ 108
Query: 1292 LTLFFPPFSYKARLFFHKPKFGILDECTNA----TSVDVEEQLYRLAKDMGITFVTS 1344
AR +P +LDE T+ +++ E L RLA++ G T V
Sbjct: 109 -----------ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV 154
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-06
Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 20/197 (10%)
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------AKPGVGSDLNKEIF 516
L+ ++ P + I G G+GKSS+ L + L G I +K G+ DL K +
Sbjct: 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGL-MDLRKVLG 1316
Query: 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPP--EKEIN 574
+PQ P GT+R L P + + + E L+ L+ ++ R + E++
Sbjct: 1317 IIPQAPVLFSGTVRFNL-DPFNEHNDAD------LWESLERAHLKDVIRRNSLGLDAEVS 1369
Query: 575 WGDE-LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSC--ITI 631
E S+G++Q L +AR + K +LDE T+AV + +R SC + I
Sbjct: 1370 EAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 1429
Query: 632 SHRPALVAFHDVVLSLD 648
+HR + D +L LD
Sbjct: 1430 AHRLNTIIDCDRILVLD 1446
|
Length = 1622 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 54/206 (26%), Positives = 80/206 (38%), Gaps = 46/206 (22%)
Query: 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG--LWPLVSGHIAKPGVGSDLN------- 512
+ + L V+ G I GPNGSGKS+L + + G + + SG I G DL
Sbjct: 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFK--GQDLLELEPDER 74
Query: 513 --KEIFYVPQRP------------YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558
+F Q P +A+ R + L + L +
Sbjct: 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKL----LKAKLALL 130
Query: 559 DL-EYLLDRYPPEKEINWGDELSLGEQQR---LGMARLFYHKPKFAILDECTSAVTTDME 614
+ E L+R +N G S GE++R L MA L +PK AILDE S + D
Sbjct: 131 GMDEEFLNRS-----VNEG--FSGGEKKRNEILQMALL---EPKLAILDEIDSGLDIDAL 180
Query: 615 ERFCA---KVRAMGTSCITISHRPAL 637
+ ++R S + I+H L
Sbjct: 181 KIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 3e-06
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 42/202 (20%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
I + V V G+ + + + V GS + G NGSGKS+LF+ L G L SG I+
Sbjct: 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI 66
Query: 505 PG--VGSDLNKE-IFYVPQRP------------------YTAVGTLRDQLIYPLTSDQEV 543
G L K + YVPQ Y +G LR D+++
Sbjct: 67 LGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLR----RAKKRDRQI 122
Query: 544 EPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602
+ L VD +E+ R+ ++I ELS G+++R+ +AR + + +L
Sbjct: 123 -------VTAALARVDMVEF---RH---RQIG---ELSGGQKKRVFLARAIAQQGQVILL 166
Query: 603 DECTSAVTTDMEERFCAKVRAM 624
DE + V E R + +R +
Sbjct: 167 DEPFTGVDVKTEARIISLLREL 188
|
Length = 272 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 40/173 (23%)
Query: 457 GNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK 513
G+V + N++ + G + I G +GSGKS+L +LGGL SG + G ++K
Sbjct: 18 GSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFN--GQPMSK 75
Query: 514 EIFYVPQRPYTAVGTLRDQ---LIYP-------LTSDQEVE-PLTHGGM---------VE 553
A LR+Q IY T+ + V PL G +E
Sbjct: 76 -------LSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALE 128
Query: 554 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
+L V LE+ + P ELS GE+QR+ +AR + P+ + DE T
Sbjct: 129 MLAAVGLEHRANHRP--------SELSGGERQRVAIARALVNNPRLVLADEPT 173
|
Length = 233 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 12/119 (10%)
Query: 1098 DSISFSKLDIITPSQKLLA-RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS 1156
++SFS P+Q++ A ++ I G+ + + G GSGKS++ ++L GL+ SGS
Sbjct: 6 RNVSFS-----YPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1157 L---TKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQII--YPLSREEAELRALKLHG 1210
+ + +D I YVPQ GTLRD I PL+ +E LRA +L G
Sbjct: 61 VLLDGTDIRQLDPADLRR-NIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAG 118
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-06
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 33/190 (17%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP- 519
+++++L V+ G + + GP+G GK++L R++ GL +G I + G ++I +P
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGG------RDITRLPP 73
Query: 520 -QRPYTAVGTLRDQLIYP-LTSDQEVE-PLTHGGM---------VELLKNVDLEYLLDRY 567
+R Y V + ++P LT + L + GM ELL V L +Y
Sbjct: 74 QKRDYGIV--FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKY 131
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--- 624
P +LS G+QQR+ +AR P +LDE SA+ + E ++R +
Sbjct: 132 P--------GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR 183
Query: 625 -GTSCITISH 633
G + I ++H
Sbjct: 184 LGVTTIMVTH 193
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 7e-06
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 37/197 (18%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG-LWP--LVSGHIAKPGVGSDLNK 513
G+ L+ N+ + G + + GP+G GKS+L + G L +G + +
Sbjct: 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNE------Q 67
Query: 514 EIFYVP--QRPYTAVGTL-RDQLIYPLTSDQE-----VEPLTHG-----GMVELLKNVDL 560
+ +P QR +G L +D L++P S + + G L+ L
Sbjct: 68 RLDMLPAAQR---QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGL 124
Query: 561 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF--- 617
+ + P LS G++ R+ + R +PK +LDE S + + ++F
Sbjct: 125 DGAFHQDP--------ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQW 176
Query: 618 -CAKVRAMGTSCITISH 633
++VRA G + ++H
Sbjct: 177 VFSEVRAAGIPTVQVTH 193
|
Length = 213 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 7e-06
Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 48/191 (25%)
Query: 451 KVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH-IAKPGVGS 509
KVV P +L ++++L PG+ + + G NG+GKS+L R++ G+ +G PG+
Sbjct: 12 KVVPPKKEIL-KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGI-- 68
Query: 510 DLNKEIFYVPQRPY------------TAVGTLRDQL-----IYPLTS--DQEVEPL--TH 548
++ Y+PQ P V ++D L I + D +++ L
Sbjct: 69 ----KVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQ 124
Query: 549 GGMVELLKNVD-------LEYLLD--RYPPEKEINWGD----ELSLGEQQRLGMARLFYH 595
+ E++ D LE +D R PP D +LS GE++R+ + RL
Sbjct: 125 AELQEIIDAADAWDLDRKLEIAMDALRCPP------WDADVTKLSGGERRRVALCRLLLS 178
Query: 596 KPKFAILDECT 606
KP +LDE T
Sbjct: 179 KPDMLLLDEPT 189
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 8e-06
Identities = 55/194 (28%), Positives = 80/194 (41%), Gaps = 44/194 (22%)
Query: 445 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
IE + V P G + N++L + G + G +G+GKS+L R + L SG
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 502 IAKPGV------GSDLNKE------IF----YVPQRPYTAVGTLRDQLIYPL----TSDQ 541
+ G +L K IF + R T+ D + PL T
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR------TVFDNVALPLELAGTPKA 115
Query: 542 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
E++ ELL+ V L DRYP + LS G++QR+ +AR PK +
Sbjct: 116 EIKARVT----ELLELVGLSDKADRYPAQ--------LSGGQKQRVAIARALASNPKVLL 163
Query: 602 LDECTSAV---TTD 612
DE TSA+ TT
Sbjct: 164 CDEATSALDPATTR 177
|
Length = 343 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-05
Identities = 59/254 (23%), Positives = 90/254 (35%), Gaps = 88/254 (34%)
Query: 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP----VVSGSLTKPSQHI----DEEAGSGC 1172
FE+ PG+ L + G +GSGKS++ L GL P + SG + + + + E
Sbjct: 30 FEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLR 89
Query: 1173 G--IFYVPQRPYTCLG---TLRDQII------YPLSREEAELRALKLHGKGEKLVDTTNI 1221
G I + Q P T L T+ DQI SR EA RA++L
Sbjct: 90 GKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVEL------------- 136
Query: 1222 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKI 1281
LE V L + E + LS G +QR+ ++ + L
Sbjct: 137 --------LEQVGLP---DPERRDRYPH-----QLSGGMRQRV-----MIAMALAL---- 171
Query: 1282 SELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQ----LYRLAKDM 1337
KPK I DE T A V + Q L L +++
Sbjct: 172 ---------------------------KPKLLIADEPTTALDVTTQAQILDLLKDLQREL 204
Query: 1338 GITFVTSSQRPALI 1351
G+ + + ++
Sbjct: 205 GMAVLFITHDLGVV 218
|
Length = 539 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 1175
++ + G+ + +TGP+G GKS++ +++ L SG+L + + EA +
Sbjct: 22 ISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYR-QQVS 80
Query: 1176 YVPQRPYTCLGTLRDQIIYP 1195
Y Q P T+ D +I+P
Sbjct: 81 YCAQTPALFGDTVEDNLIFP 100
|
Length = 223 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 1118 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGS 1170
L+F + G++L VTGPNGSGK+++ R+L GL P ++G + +D + S
Sbjct: 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS 70
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 46/222 (20%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD------- 510
V+ ++L + G L + G +GSGKS+L L L P G I G D
Sbjct: 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEM 358
Query: 511 --LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV--EPL-THGG----------MVELL 555
L + + V Q PY G+L P + ++ E L H ++E L
Sbjct: 359 RPLRRRMQVVFQDPY---GSLS-----PRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410
Query: 556 KNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+ V L +RYP E S G++QR+ +AR KP+ +LDE TSA+ ++
Sbjct: 411 EEVGLDPATRNRYP--------HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQ 462
Query: 615 ERFCAKVRAM----GTSCITISHRPALV-AF-HDVVLSLDGE 650
+ +R + G S + ISH A+V A H V++ DG+
Sbjct: 463 AQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504
|
Length = 534 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-05
Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 25/190 (13%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 518
++ NL L+++PG + + G +G+GK++L R++ G +P G +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS 456
Query: 519 PQRPYTAVGTLRDQLI----YPLTSDQEVEPLTHGGMVELLKNVDL--EYLLDRYPPEKE 572
P + I T D VE+L L L R
Sbjct: 457 ALIPGEYEPEFGEVTILEHLRSKTGDLNAA-------VEILNRAGLSDAVLYRRKF---- 505
Query: 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV----RAMGTSC 628
ELS G+++R +A+L +P ++DE + + R K+ R G +
Sbjct: 506 ----SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITL 561
Query: 629 ITISHRPALV 638
I ++HRP +
Sbjct: 562 IVVTHRPEVG 571
|
Length = 593 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 36/163 (22%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---------------AKP 505
V +++L+V G + + GPNG+GK++ F ++ GL SG I A+
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79
Query: 506 GVGSDLNKEIFYVPQRPYTAVG-TLRDQLIYPL---TSDQEVEPLTHGGMVELLKNVDLE 561
G+G Y+PQ T+ D ++ L D + + LL+ +
Sbjct: 80 GIG--------YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEE-LDALLEEFHIT 130
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+L D LS GE++R+ +AR PKF +LDE
Sbjct: 131 HLRDSK--------AYSLSGGERRRVEIARALAANPKFILLDE 165
|
Length = 243 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 1024 TQGELAHALRFLASVVSQSFLAFGDIL-ELHRKFVELSGGINRIFELEELLDAAQPGDDE 1082
+ G L F A +V+ S ++ EL R +G R+ EL + A+P +
Sbjct: 273 SAGTLG-QFVFYAVMVAGSIGTLSEVWGELQRA----AGAAERLIELLQ----AEP---D 320
Query: 1083 ISGSSQHKWNSTDYQDSISFSKLDIITPSQ--KLLARQLTFEIVPGKSLLVTGPNGSGKS 1140
I + K + I F +++ P++ + L + PG+++ + GP+G+GKS
Sbjct: 321 IKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKS 380
Query: 1141 SVFRVL 1146
++F++L
Sbjct: 381 TLFQLL 386
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-05
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 21/199 (10%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG------VGSDLNKEIF 516
++ + G + I G +G+GKS++ R+L + + SG I G L + I
Sbjct: 281 GISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340
Query: 517 YVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 574
VPQ T+ + Y P + +EV + + + P +
Sbjct: 341 IVPQDTVLFNDTIAYNIKYGRPDATAEEVG--------AAAEAAQIHDFIQSLPEGYDTG 392
Query: 575 WGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR--AMGTSCI 629
G+ +LS GE+QR+ +AR P ILDE TSA+ T E+ A +R + G + +
Sbjct: 393 VGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTL 452
Query: 630 TISHRPALVAFHDVVLSLD 648
I+HR + + D ++ LD
Sbjct: 453 VIAHRLSTIIDADEIIVLD 471
|
Length = 497 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-05
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 451 KVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIAKPGVG 508
K V++L+L V G + G NG+GK++ ++L G SG +I +
Sbjct: 8 KTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR 67
Query: 509 SDLNK---EIFYVPQ 520
+D + Y PQ
Sbjct: 68 TDRKAARQSLGYCPQ 82
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 57/232 (24%), Positives = 101/232 (43%), Gaps = 27/232 (11%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
I F V G ++ +T + PG +TG +G+GKS+L +++ G+ +G I
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61
Query: 505 PG--VGSDLNKEIFYVPQRP---YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE------ 553
G + N+E+ ++ ++ + L D+ +Y D PL G
Sbjct: 62 SGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVY----DNVAIPLIIAGASGDDIRRR 117
Query: 554 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
+ +D LLD K N+ +LS GEQQR+G+AR +KP + DE T + +
Sbjct: 118 VSAALDKVGLLD-----KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172
Query: 614 EE---RFCAKVRAMGTSCITISHRPALVAFHDV-VLSLDGEGEWRVHDKRDG 661
E R + +G + + +H L++ +L+L + +H G
Sbjct: 173 SEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTL---SDGHLHGGVGG 221
|
Length = 222 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 2e-05
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 30/210 (14%)
Query: 444 YIE--FSGVKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500
YIE S +++ TG L V++ +L +E G +I G +GSGKS++ R+L L G
Sbjct: 24 YIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83
Query: 501 HIAKPGVGSDLNK----EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM----- 551
+ GV D+ K E+ V ++ V + + D + G+
Sbjct: 84 QVLIDGV--DIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEER 141
Query: 552 ----VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
++ L+ V LE YP DELS G +QR+G+AR P ++DE S
Sbjct: 142 REKALDALRQVGLENYAHSYP--------DELSGGMRQRVGLARALAINPDILLMDEAFS 193
Query: 608 A----VTTDMEERFCAKVRAMGTSCITISH 633
A + T+M++ + + ISH
Sbjct: 194 ALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
|
Length = 400 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 37/211 (17%)
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG----- 500
E GVKV G + + ++ LK+ + GP+G GKS+L R + L+ G
Sbjct: 22 EVEGVKVFY-GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEG 80
Query: 501 -------HIAKPGVGS-DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552
+I + S L +++ V QRP ++ + + + P +G
Sbjct: 81 RLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAF--------APRANG--- 129
Query: 553 ELLKNVD--LEYLLDRYPPEKEIN-----WGDELSLGEQQRLGMARLFYHKPKFAILDEC 605
N+D +E L R +E+ G LS G+QQRL +AR KP ++DE
Sbjct: 130 -YKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEP 188
Query: 606 TSA---VTTDMEERFCAKVRAMGTSCITISH 633
SA ++T E C +++ T I ++H
Sbjct: 189 CSALDPISTRQVEELCLELKEQYT-IIMVTH 218
|
Length = 274 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 43/205 (20%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL---VSGHIAKPGVGSDLNKEIF 516
++++ + V+PG +L+ G GSG S+L + L V G I G+ E +
Sbjct: 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81
Query: 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWG 576
++IY D LT V L++ L G
Sbjct: 82 -------------PGEIIYVSEEDVHFPTLT----VRET----LDFALRCK--------G 112
Query: 577 DE----LSLGEQQRLGMARLFYHKPKFAILDECT----SAVTTDMEERFCAKVRAMGTSC 628
+E +S GE++R+ +A + D T S+ ++ + + T+
Sbjct: 113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTT 172
Query: 629 ITISHRPALVAFH---DVVLSLDGE 650
++ + + V++ +G
Sbjct: 173 FVSLYQASDEIYDLFDKVLVLYEGR 197
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 56/182 (30%), Positives = 80/182 (43%), Gaps = 33/182 (18%)
Query: 453 VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG--LWPLVSGHIAKPGVGSD 510
+ N +++ L L + G I GPNGSGKS+L +V+ G + ++ G I G S
Sbjct: 15 ASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGE-SI 73
Query: 511 LNKE--------IFYVPQRPYTAVG-TLRDQLIYPLTSDQ------EVEPLTHGGMV-EL 554
L+ E IF Q P G + D L S + E++PL ++ E
Sbjct: 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEK 133
Query: 555 LKNVDL-EYLLDRYPPEKEINWGDELSLGEQQR---LGMARLFYHKPKFAILDECTSAVT 610
LK V + L R +N G S GE++R L MA L + AILDE S +
Sbjct: 134 LKLVGMDPSFLSRN-----VNEG--FSGGEKKRNEILQMALL---DSELAILDETDSGLD 183
Query: 611 TD 612
D
Sbjct: 184 ID 185
|
Length = 252 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 63/265 (23%), Positives = 101/265 (38%), Gaps = 74/265 (27%)
Query: 1099 SISFSKLDIITPSQKLLARQL---TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSG 1155
+S L I+ K L + EI G++L + G +GSGKS++ R+L GL SG
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1156 SLTKPSQHIDEEAGSG---CGIFYVPQRPYTCLGTLR--DQIIYPLSREEAELRALKLHG 1210
S+ + + + + + V Q PY+ L R +I+ L+ HG
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILS---------EPLRPHG 113
Query: 1211 KGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHL 1270
+ +LD G+ S+ L+R LS G++QR+ + L
Sbjct: 114 LSKSQQRIAELLDQV------GLPPSF-LDR----------RPHELSGGQRQRIAIARAL 156
Query: 1271 VLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQ- 1329
+ +PK ILDE T+A V V+ Q
Sbjct: 157 IP------------------------------------EPKLLILDEPTSALDVSVQAQI 180
Query: 1330 ---LYRLAKDMGITFVTSSQRPALI 1351
L L K+ G+T++ S AL+
Sbjct: 181 LNLLLELKKERGLTYLFISHDLALV 205
|
Length = 252 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 42/173 (24%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVL---GGLWPLVS--------GH-IAKPGVGS- 509
+++L P + GP+GSGKS+L R + L P V+ GH I P +
Sbjct: 23 SVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82
Query: 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPP 569
DL KEI V Q+P ++ + ++Y L LK + + +LD
Sbjct: 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLR----------------LKGIKDKQVLDEAVE 126
Query: 570 E--KEINWGDE-----------LSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
+ K + DE LS G+QQR+ +AR+ PK +LDE TSA+
Sbjct: 127 KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSAL 179
|
Length = 252 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 25/184 (13%)
Query: 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTA 525
L V G + I GP+G+GKS+L ++ G SG I +D + QRP +
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV----NDQSHTGLAPYQRPVSM 74
Query: 526 VG---------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWG 576
+ T+R + L ++ +V+ + V + LDR P
Sbjct: 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-------- 126
Query: 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT----SCITIS 632
++LS G++QR+ +AR +LDE SA+ + E A V+ + + + + ++
Sbjct: 127 EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVT 186
Query: 633 HRPA 636
H +
Sbjct: 187 HHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 25/169 (14%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP------LVSGHIAKPGVGSDLNKE 514
V+ L+ + G L I G NGSGKS+L ++L G+ L+ H G S ++
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQR 88
Query: 515 IFYVPQRPYTA------VGTLRDQLIYPLTSDQEVEPLT-HGGMVELLKNVDLEYLLDRY 567
I + Q P T+ + + D +PL + ++EP ++E L+ V L
Sbjct: 89 IRMIFQDPSTSLNPRQRISQILD---FPLRLNTDLEPEQREKQIIETLRQVGLL------ 139
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
P+ + L+ G++QRLG+AR +PK I DE +++ DM R
Sbjct: 140 -PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASL--DMSMR 185
|
Length = 267 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
+++++ +V G + + G NG+GKS+L R+L G++P SG +
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV 79
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 36/202 (17%)
Query: 454 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----- 508
TP ++N+ +++E G + + G GSGKS+L + L GL SG I GV
Sbjct: 16 TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK 75
Query: 509 ---SDLNKEIFYVPQRP-YTAVGTLRDQLIY------PLT---SDQEVEPLTHGGMVELL 555
SD+ K++ V Q P Y L ++ I P+ S++E+E M ++
Sbjct: 76 VKLSDIRKKVGLVFQYPEY----QLFEETIEKDIAFGPINLGLSEEEIENRVKRAM-NIV 130
Query: 556 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
+D E D+ P ELS G+++R+ +A + +PK ILDE T+ + +
Sbjct: 131 G-LDYEDYKDKSP--------FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRD 181
Query: 616 RFCAKVRAM----GTSCITISH 633
K++ + + I +SH
Sbjct: 182 EILNKIKELHKEYNMTIILVSH 203
|
Length = 287 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 19/147 (12%)
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSDLNKEIFYVPQ 520
L V+ G LL+ G NG+GK++L RVL GL + SG I K D ++ + Y+
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH 89
Query: 521 RP--YTAVGTLRDQLIYPLTSDQEVEP-LTHGGMVELLKNVDLEYLLDRYPPEKEINWGD 577
P + TL + ++ L G + ++ E L R
Sbjct: 90 LPGLKADLSTLEN--LHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVR----------- 136
Query: 578 ELSLGEQQRLGMARLFYHKPKFAILDE 604
+LS G+++RL +ARL+ +LDE
Sbjct: 137 QLSAGQKKRLALARLWLSPAPLWLLDE 163
|
Length = 214 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 20/123 (16%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS-------LTKPSQHIDEEAGSG 1171
++F I G++L + G +GSGKS++ R + GL SGS L K S+ + +
Sbjct: 24 VSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRK- 82
Query: 1172 CGIFYVPQRPYTCLG---TLRDQIIYPL------SREEAELRALKLHGKGEKLVDTTNIL 1222
I V Q P + L T+ +QI PL S++EA A+ L + +L
Sbjct: 83 -EIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLL--LLVGVGLPEEVL 139
Query: 1223 DSY 1225
+ Y
Sbjct: 140 NRY 142
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 1113 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL 1157
++L L+F + G+ + + GPNG+GK+S+ R+L GL +G +
Sbjct: 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEV 58
|
Length = 204 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 60/231 (25%), Positives = 97/231 (41%), Gaps = 57/231 (24%)
Query: 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL----- 497
N IE +KV VL + + L++ + + GP+GSGKS+L RV L L
Sbjct: 2 NKIEIRDLKVSFGQVEVL-DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 498 VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRD--QLIYPLTSDQEVEPLTHGGMVELL 555
VSG + G ++IF + V LR Q+++ Q P+ + + +
Sbjct: 61 VSGEVYLDG------QDIFKMD------VIELRRRVQMVF-----QIPNPIPN---LSIF 100
Query: 556 KNVDLEYLLDRYPPEKE-----INWGDE------------------LSLGEQQRLGMARL 592
+NV L L+R K+ + W E LS G+QQRL +AR
Sbjct: 101 ENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160
Query: 593 FYHKPKFAILDECTSAV----TTDMEERFCAKVRAMGTSCITISHRPALVA 639
+P+ + DE T+ + T +E F + M + + ++H P A
Sbjct: 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKKDM--TIVLVTHFPQQAA 209
|
Length = 250 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 4e-05
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSS---LFRVLGGLWP--------LVSGH-IAKPGVG 508
++ +++++E S + GP+G GKS+ LF + L P + G I GV
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 509 SD-LNKEIFYVPQRPYTAVGTLRDQLIYPL-TSDQEVEPLTHGGMVELLKNVDL-EYLLD 565
D L K + V QRP ++ + + Y L + + + E LK L + + D
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEE 615
+ KE + LS G+QQRL +AR P ++DE SA+ T +EE
Sbjct: 139 KL---KESAFA--LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE 187
|
Length = 250 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 40/180 (22%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IE + +K VL +++L + G + + GP+GSGK++L R++ GL SGHI
Sbjct: 3 IEIANIKKSFGRTQVL-NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF 61
Query: 505 PGVGSDL------NKEIFYVPQRPYTAVG--TLRDQLIYPLTS------------DQEVE 544
G +D+ ++++ +V Q Y T+ D + + LT +V
Sbjct: 62 HG--TDVSRLHARDRKVGFVFQH-YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKV- 117
Query: 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+LL+ V L +L DRYP + LS G++QR+ +AR +P+ +LDE
Sbjct: 118 -------TQLLEMVQLAHLADRYPAQ--------LSGGQKQRVALARALAVEPQILLLDE 162
|
Length = 353 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 5e-05
Identities = 57/250 (22%), Positives = 81/250 (32%), Gaps = 99/250 (39%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG--- 1173
+ ++ I G+ + + GP+GSGKS++ +L GL SG + +D S
Sbjct: 21 KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVR-----VDGTDISKLSEKE 75
Query: 1174 --------IFYVPQRPYTCLGTL--RDQIIYPL-----SREEAELRALKLHGKGEKLVDT 1218
I +V Q + L L + + PL ++E RA +L
Sbjct: 76 LAAFRRRHIGFVFQS-FNLLPDLTALENVELPLLLAGVPKKERRERAEEL---------- 124
Query: 1219 TNILDSYLKTILEGVRLSYLLER--EEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLC 1276
LE V L L E LS G+QQR V I
Sbjct: 125 -----------LERVGLGDRLNHYPSE------------LSGGQQQR-------VAI--- 151
Query: 1277 SINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNA----TSVDVEEQLYR 1332
AR + PK + DE T T +V E L
Sbjct: 152 --------------------------ARALANDPKIILADEPTGNLDSETGKEVMELLRE 185
Query: 1333 LAKDMGITFV 1342
L K+ G T V
Sbjct: 186 LNKEAGTTIV 195
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 51/194 (26%), Positives = 78/194 (40%), Gaps = 31/194 (15%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN-------- 512
+ N++L V G +++ GP+GSGKS+L R L + G I G ++
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPRE 86
Query: 513 ------KEIFYVPQ--RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
I YV Q R V L D + PL + + +LL ++L L
Sbjct: 87 VLEVRRTTIGYVSQFLRVIPRVSAL-DVVAEPLLARGVPREVARAKAADLLTRLNLPERL 145
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER-----FCA 619
P S GEQQR+ +AR F +LDE T+++ D R
Sbjct: 146 WSLAPAT-------FSGGEQQRVNIARGFIVDYPILLLDEPTASL--DATNRAVVVELIR 196
Query: 620 KVRAMGTSCITISH 633
+ +A G + + I H
Sbjct: 197 EAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-05
Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 44/168 (26%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH--IAKPGVGSDLNKE---- 514
V+ + KV G GPNG+GK++ R+L L SG +A G D+ +E
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVA----GYDVVREPRKV 64
Query: 515 ---IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM------------VELLKNVD 559
I VPQ ++ + LT + +E G + ELL+ +
Sbjct: 65 RRSIGIVPQYA-----SVDED----LTGRENLE--MMGRLYGLPKDEAEERAEELLELFE 113
Query: 560 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
L DR S G ++RL +A H+P LDE T+
Sbjct: 114 LGEAADRPV--------GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 1159
+SFS + ++ + + L+ E+ G+ + + G +GSGKS++ ++L G G +T
Sbjct: 6 VSFSYPE----QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITL 61
Query: 1160 PSQHIDE-EAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRAL 1206
+ + E I + QRPY TLR+ + S E + AL
Sbjct: 62 DGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLAL 109
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 6e-05
Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 518
VL+ ++++ V G ++ G GSGKS+L + L + + G + + I YV
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA-------ERSIAYV 726
Query: 519 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL---LDRYPPEKEINW 575
PQ+ + T+R +++ D+E + DL L L+ EK +N
Sbjct: 727 PQQAWIMNATVRGNILF---FDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVN- 782
Query: 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD-----MEERFCAKVRAMGTSCIT 630
LS G++ R+ +AR Y +LD+ SA+ +EE F + G + +
Sbjct: 783 ---LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA--GKTRVL 837
Query: 631 ISHRPALVAFHDVVLSLDGE 650
+H+ +V D V++L
Sbjct: 838 ATHQVHVVPRADYVVALGDG 857
|
Length = 1560 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 6e-05
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 31/177 (17%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA- 503
I+ +GV + +V L+ V G + GPNG+GKS++ R++ G+ +G I
Sbjct: 42 IDLAGVSK-SYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV 100
Query: 504 ----KPGVGSDLNKEIFYVPQ-----RPYTAVGTLRDQLI----YPLTSDQEVEPLTHGG 550
P I VPQ +T R+ L+ Y S +E+E +
Sbjct: 101 LGVPVPARARLARARIGVVPQFDNLDLEFTV----RENLLVFGRYFGMSTREIEAV---- 152
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
+ LL+ LE D +LS G ++RL +AR + P+ ILDE T+
Sbjct: 153 IPSLLEFARLESKADARVS--------DLSGGMKRRLTLARALINDPQLLILDEPTT 201
|
Length = 340 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-05
Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 28/224 (12%)
Query: 443 NYIEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
N +EF V P + + +++ + GS + G NGSGKS++ +++ GL L+
Sbjct: 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL--LLPDD 61
Query: 502 IAKPGV---GSDLNKEIFY--------VPQRPYTA-VG-TLRDQLIYPLTSDQEVEPLTH 548
+ G L + + V Q P VG T+ D + + L + P
Sbjct: 62 NPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMI 121
Query: 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
+ ++L +V + +D P LS G++QR+ +A + +PK ILDE TS
Sbjct: 122 KIVRDVLADVGMLDYIDSEP--------ANLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 609 VTTDMEERFCAKVRAM----GTSCITISHRPALVAFHDVVLSLD 648
+ +E+ +R + + I+I+H D VL LD
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLD 217
|
Length = 282 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 8e-05
Identities = 58/245 (23%), Positives = 84/245 (34%), Gaps = 73/245 (29%)
Query: 1112 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDE-E 1167
K + L+F I G+ + GPNGSGKS++ + L GL SG + K + E
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE 73
Query: 1168 AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLV---DTTNILDS 1224
YVPQ P + L+ E L H D + ++
Sbjct: 74 LAKKLA--YVPQSP---------SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEA 122
Query: 1225 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISEL 1284
LE + L +L +R D LS GE+QR VLI
Sbjct: 123 -----LELLGLEHLADR---PVDE-------LSGGERQR-------VLI----------- 149
Query: 1285 DWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNA----TSVDVEEQLYRLAKDMGIT 1340
AR + +LDE T+ ++V E L L ++ G+T
Sbjct: 150 ------------------ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLT 191
Query: 1341 FVTSS 1345
V
Sbjct: 192 VVMVL 196
|
Length = 258 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 29/163 (17%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSD 510
V++++++L + G I GPNG+GKS+L ++ L SG I G+ +
Sbjct: 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKE 72
Query: 511 LNKEIFYVPQR-PYTAVGTLRDQLI---YP-----LTSDQEVEPLTHGGMVELLKNVDLE 561
L K++ + Q + T+RD + +P LT + + E ++ + LE
Sbjct: 73 LAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI------INEAIEYLHLE 126
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
L DRY DELS G++QR +A + + +LDE
Sbjct: 127 DLSDRYL--------DELSGGQRQRAFIAMVLAQDTDYVLLDE 161
|
Length = 252 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 8e-05
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVGSDLN---KE 514
L++N++ K +PG I GP+G+GKS+L L G VSG + G D K
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI 83
Query: 515 IFYVPQ 520
I YVPQ
Sbjct: 84 IGYVPQ 89
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 8e-05
Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 35/186 (18%)
Query: 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSL-------------FR 489
N+ + G K V+N+T+K+ I GP+G GK++L FR
Sbjct: 8 NFSAYYGEKKA-------VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 490 VLGGLWPLVSGH-IAKPGVG-SDLNKEIFYVPQRPYTAVGTLRDQLIYPL----TSDQEV 543
V G + G I P + ++ K++ V Q+P ++ D + + +
Sbjct: 61 VEGKI--YFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHK 118
Query: 544 EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILD 603
+VE +++ L D E G LS G+QQRL +AR +P+ +LD
Sbjct: 119 ----LDRIVE--ESLKKAALWDEVKSELNKP-GTRLSGGQQQRLCIARALAVEPEVILLD 171
Query: 604 ECTSAV 609
E TSA+
Sbjct: 172 EPTSAL 177
|
Length = 250 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 9e-05
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 35/171 (20%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG------------HIAKPGVG 508
++N+++++ S + GP+G GKS+ R L + L+ I +P V
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 509 S-DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHG-------GMVEL-LKNVD 559
+L K + V Q+P ++ D + Y P HG G+VE L++
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAY--------GPRIHGANKKDLDGVVENALRSAA 139
Query: 560 L-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
L + DR LS G+QQRL +AR KPK + DE TSA+
Sbjct: 140 LWDETSDRLKSP-----ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSAL 185
|
Length = 258 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 9e-05
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 35/170 (20%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG------------HIAKPGVG 508
++++ L + + GP+G GKS+L R L + L+ G +I P V
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82
Query: 509 -SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS--------DQEVE-PLTHGGMVELLKNV 558
+L + + V Q+P ++ D + Y L D+ VE L + + +K+
Sbjct: 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD- 141
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
L + LS G+QQRL +AR KP+ ++DE TSA
Sbjct: 142 ----RLHKS--------ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
|
Length = 253 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 92/410 (22%), Positives = 150/410 (36%), Gaps = 117/410 (28%)
Query: 969 SRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHN-----VTW-GLSLLYAMEHKGDRALV 1022
SRF+E LE +L L K+K L T + V + G L+ + LV
Sbjct: 364 SRFKEALEETLQLNKRKALAYAGY-LWTTSVLGMLIQVLVLYYGGQLVLTGKVSSG-NLV 421
Query: 1023 S---TQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPG 1079
S Q +L A+R L+ V + +++ G ++FE LD +
Sbjct: 422 SFLLYQEQLGEAVRVLSYV-------YSGMMQA-------VGASEKVFEY---LD--RKP 462
Query: 1080 DDEISGSSQHKW--NSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGS 1137
+ ++G+ ++QD +SFS P +L + LTF + PG+ + + GP+GS
Sbjct: 463 NIPLTGTLAPLNLEGLIEFQD-VSFSY--PNRPDVPVL-KGLTFTLHPGEVVALVGPSGS 518
Query: 1138 GKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY-------VPQRPYTCLGTLRD 1190
GKS+V +L+ L+ G + +D Y V Q P G++R+
Sbjct: 519 GKSTVAALLQNLYQPTGGQVL-----LDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRE 573
Query: 1191 QIIYPLSREEAE--LRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248
I Y L+ E + A K + +++ N D+ EVG
Sbjct: 574 NIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDT------------------EVGEKG 615
Query: 1249 NLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFH 1308
+ LS G++QR+ + AR
Sbjct: 616 SQ-----LSGGQKQRIAI------------------------------------ARALVR 634
Query: 1309 KPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLEL 1358
KP+ ILDE T+A + E+ L + R L+ H L
Sbjct: 635 KPRVLILDEATSALDAECEQLLQESRS--------RASRTVLLIAHRLST 676
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-04
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCG 1173
R ++ E+ G+ V G NG GK+++ + L GL PV SGS+ + + + G
Sbjct: 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAG 76
Query: 1174 IFYVPQ 1179
I YVPQ
Sbjct: 77 IAYVPQ 82
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-04
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
+L+++L+ K+ PG + + GPNG+GKS+LFR++ G SG I
Sbjct: 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 31/143 (21%)
Query: 476 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VGSDLNKEIFYVPQR------------- 521
+ GP+GSGK+SL ++ GL G I G V D K IF P++
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF 88
Query: 522 PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSL 581
P+ V R L Y + +L+ + +E+LLDRYP LS
Sbjct: 89 PHYTV---RGNLRY------GMWKSMRAQFDQLVALLGIEHLLDRYP--------GTLSG 131
Query: 582 GEQQRLGMARLFYHKPKFAILDE 604
GE+QR+ + R P+ ++DE
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDE 154
|
Length = 352 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 24/226 (10%)
Query: 441 EANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500
E ++ + G ++ + + ++ G I G NG+GKS+LF+ L G+ SG
Sbjct: 2 EDYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSG 61
Query: 501 HIAKPGVGSD--------LNKEIFYVPQRPYTAV--GTLRDQLIYPLTSDQEVEPLTHGG 550
I G D L + + V Q P + ++ + + + + E
Sbjct: 62 RILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR 121
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV- 609
+ LK +E+L D K + LS G+++R+ +A + +PK +LDE T+ +
Sbjct: 122 VDNALKRTGIEHLKD-----KPTHC---LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD 173
Query: 610 ---TTDMEERFCAKVRAMGTSCITISHRPALVAFH-DVVLSLDGEG 651
+++ + + +G + I +H +V + D V + EG
Sbjct: 174 PMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMK-EG 218
|
Length = 283 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 37/168 (22%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLF-----RVLGGLWPLVSGHIAKPGVGSD---L 511
++ +++L VE G + I G +GSGK++L RV GG SG I G
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGG--GTTSGQILFNGQPRKPDQF 79
Query: 512 NKEIFYVPQRPYTAVG-TLRDQLIYPLT-----------SDQEVEPLTHGGMVELLKNVD 559
K + YV Q G T+R+ L Y + VE LL+++
Sbjct: 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE-------DVLLRDLA 132
Query: 560 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
L + +S GE++R+ +A PK ILDE TS
Sbjct: 133 LTRIGGNLVK--------GISGGERRRVSIAVQLLWDPKVLILDEPTS 172
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 28/165 (16%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---DLNKEIFY 517
V+N++L+V+ G I G +G+GK++L +++ G+ SG + VG D+ K
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVR-VGDEWVDMTKPGPD 358
Query: 518 VPQRPYTAVGTLRDQL-IYP-------LTSDQEVE-PLTHGGM--VELLKNVDL-----E 561
R +G L + +YP LT +E P M V LK V E
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAE 418
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
+LD+YP DELS GE+ R+ +A++ +P+ ILDE T
Sbjct: 419 EILDKYP--------DELSEGERHRVALAQVLIKEPRIVILDEPT 455
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 55/166 (33%), Positives = 77/166 (46%), Gaps = 36/166 (21%)
Query: 465 TLKVEPGS-----NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---SDLNKEIF 516
TL+VE GS + I GPNG GK++ ++L G+ KP G +L+ +
Sbjct: 14 TLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGV--------LKPDEGDIEIELDT-VS 64
Query: 517 YVPQR---PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 573
Y PQ Y GT+RD L+ +T D P E+ K + +E +LDR P
Sbjct: 65 YKPQYIKADYE--GTVRD-LLSSITKDFYTHPYFK---TEIAKPLQIEQILDREVP---- 114
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA 619
ELS GE QR+ +A +LDE SA D+E+R A
Sbjct: 115 ----ELSGGELQRVAIAACLSKDADIYLLDE-PSA-YLDVEQRLMA 154
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 54/235 (22%), Positives = 91/235 (38%), Gaps = 68/235 (28%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
++FE+ PG+ + GPNG+GK++ FR++ GL G +T + +E + G Y
Sbjct: 19 DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG--Y 76
Query: 1177 VP-QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 1235
+P +R T+ DQ+ Y L+ L G + + +L
Sbjct: 77 LPEERGLYPKMTVEDQLKY-LAE---------LKGMPKAEIQK---------------KL 111
Query: 1236 SYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLF 1295
LER E+ ++ LS G QQ++ +S ++
Sbjct: 112 QAWLERLEIVGKKTKKIKE-LSKGNQQKIQFISAVI------------------------ 146
Query: 1296 FPPFSYKARLFFHKPKFGILDE-CTNATSVDVE--EQLYRLAKDMGITFVTSSQR 1347
H+P+ ILDE + V+VE + K+ G T + SS R
Sbjct: 147 ------------HEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHR 189
|
Length = 300 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 2e-04
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
+L+++L+ + PG + I GPNG+GKS+LF+++ G SG I
Sbjct: 336 DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
|
Length = 556 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 68/229 (29%), Positives = 95/229 (41%), Gaps = 61/229 (26%)
Query: 450 VKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV- 507
V TP G+V V +L + G L I G +GSGKS L GL +A G
Sbjct: 20 VTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL-------LAANGRI 72
Query: 508 -GSDL--NKEIFYVPQRPYTAVGTLRDQLIY-----PLTS--------DQEVEPLT-HGG 550
GS +EI +P++ + LR + I P+TS +Q +E L H G
Sbjct: 73 GGSATFNGREILNLPEK---ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG 129
Query: 551 M---------VELLKNVDLEYLLDRYPPE--KEIN-WGDELSLGEQQRLGMARLFYHKPK 598
M V +L V + PE K + + E S G +QR+ +A +PK
Sbjct: 130 MSKAEAFEESVRMLDAVKM--------PEARKRMKMYPHEFSGGMRQRVMIAMALLCRPK 181
Query: 599 FAILDECTSA--VT------TDMEERFCAKVRAMGTSCITISHRPALVA 639
I DE T+A VT T + E R T+ I I+H +VA
Sbjct: 182 LLIADEPTTALDVTVQAQIMTLLNEL----KREFNTAIIMITHDLGVVA 226
|
Length = 330 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-04
Identities = 62/222 (27%), Positives = 91/222 (40%), Gaps = 50/222 (22%)
Query: 445 IEFSGVKVVT--PTGNVLVE---------NLTLKVEPGS-----NLLITGPNGSGKSSLF 488
IEF + LVE + +L+VE G + I GPNG GK++
Sbjct: 324 IEFE-ERPPRDESERETLVEYPDLTKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFA 382
Query: 489 RVLGGLWPLVSGHIAKPGVGS-DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPL 546
++L G + KP G D +I Y PQ GT+ D L+ +T D
Sbjct: 383 KLLAG--------VLKPDEGEVDPELKISYKPQYIKPDYDGTVED-LLRSITDDLGSSYY 433
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
E++K + LE LLD+ +LS GE QR+ +A +LDE +
Sbjct: 434 KS----EIIKPLQLERLLDKNV--------KDLSGGELQRVAIAACLSRDADLYLLDEPS 481
Query: 607 SAVTTDMEERF-CAKV--RAMGTSCITISHRPALVAFHDVVL 645
+ + D+E+R AK R T ALV HD+ +
Sbjct: 482 AHL--DVEQRLAVAKAIRRIAEEREAT-----ALVVDHDIYM 516
|
Length = 590 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 50/224 (22%), Positives = 80/224 (35%), Gaps = 67/224 (29%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 1175
++F + PG+ + GP+GSGKS+V +L + G + KP + + +
Sbjct: 33 VSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS-KVS 91
Query: 1176 YVPQRPYTCLGTLRDQIIYPL---SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEG 1232
V Q P +L+D I Y L S E + A K H S++ + G
Sbjct: 92 LVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHA------------HSFISELASG 139
Query: 1233 VRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCL 1292
EVG + LS G++QR+ +
Sbjct: 140 Y-------DTEVGEKGSQ-----LSGGQKQRVAI-------------------------- 161
Query: 1293 TLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD 1336
AR P+ ILDE T+A + E+Q+ + D
Sbjct: 162 ----------ARALIRNPQVLILDEATSALDAESEQQVQQALYD 195
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 1110 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE 1166
P + +L + ++F I GK + + GP+GSGKS++ R+L + V SGS+ Q I E
Sbjct: 12 PGRPVL-KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIRE 67
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 39/185 (21%), Positives = 61/185 (32%), Gaps = 70/185 (37%)
Query: 1140 SSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIFYVPQRPYTCLG-TLRDQIIYP 1195
S++ +++ GL SG++ + + I V Q P T+R+ + +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1196 LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255
L +EA+ RA + LE V L L+RE VG
Sbjct: 61 LRDKEADARAEE---------------------ALERVGLPDFLDREPVG---------T 90
Query: 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGIL 1315
LS G++QR+ + AR KPK +L
Sbjct: 91 LSGGQKQRV--------------------------AI----------ARALLKKPKLLLL 114
Query: 1316 DECTN 1320
DE T
Sbjct: 115 DEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 1112 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG 1171
Q+ + ++ E+ PGK L + GPNG+GKS++ RV+ GL G + + +
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK--------- 66
Query: 1172 CGIFYVPQRPY 1182
I YVPQ+ Y
Sbjct: 67 LRIGYVPQKLY 77
|
Length = 251 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 50/233 (21%), Positives = 81/233 (34%), Gaps = 72/233 (30%)
Query: 1118 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 1177
++ + G+ GPNG+GK++ +++ GL SG +T + +
Sbjct: 18 DISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIE-------- 69
Query: 1178 PQRPYTCLGTLRD-QIIYP-LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 1235
+G L + YP L+ E +L G +K +D +L+ V L
Sbjct: 70 ---ALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRID----------EVLDVVGL 116
Query: 1236 SYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLF 1295
+++V SLG +QRLG+
Sbjct: 117 KD-SAKKKVK---------GFSLGMKQRLGI----------------------------- 137
Query: 1296 FPPFSYKARLFFHKPKFGILDECTNATSVD-VEE--QLYRLAKDMGITFVTSS 1345
A P ILDE TN D ++E +L +D GIT + SS
Sbjct: 138 -------ALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISS 183
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 1159
I L + LL + ++ I PG + + G NG+GKS++ +++ G G +T
Sbjct: 1 IELENLSKTYGGKLLL-KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59
Query: 1160 PSQHIDEEAGSGCGIFYVPQ 1179
GS I Y Q
Sbjct: 60 ---------GSTVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 38/164 (23%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G +E++ L +E G L++ GP+G GK++L ++ G P G I G
Sbjct: 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGK--------- 63
Query: 517 YVPQRPYTAVGTLR-----DQLIYPLTSDQE-VE-PLTHGGM---------VELLKNVDL 560
P G R ++ + P + Q+ V L G+ ++LK V L
Sbjct: 64 -----PVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGL 118
Query: 561 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
E RY W +LS G++QR+G+AR P+ +LDE
Sbjct: 119 EGAEKRYI------W--QLSGGQRQRVGIARALAANPQLLLLDE 154
|
Length = 255 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 40/242 (16%)
Query: 439 FSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV 498
F +YI G TP ++N++ ++E GS + + G GSGKS+L + L
Sbjct: 5 FENVDYIYSPG----TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS 60
Query: 499 SGHIA------KPGVGS----DLNKEIFYVPQRPYTAV---GTLRDQLIYPLT---SDQE 542
SG I P G+ L K++ V Q P + L+D P S+ E
Sbjct: 61 SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDE 120
Query: 543 VEPLTHGGMVELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
+ ++ LK V L E L+ + P ELS G+ +R+ +A + ++P+
Sbjct: 121 AKE----KALKWLKKVGLSEDLISKSP--------FELSGGQMRRVAIAGVMAYEPEILC 168
Query: 602 LDECTSAV----TTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGEWRVH 656
LDE + + +M + F +A G + I ++H VA + D VL L+ G+ H
Sbjct: 169 LDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLE-HGKLIKH 226
Query: 657 DK 658
Sbjct: 227 AS 228
|
Length = 287 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 47/186 (25%), Positives = 71/186 (38%), Gaps = 27/186 (14%)
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523
L V G + I GP+G+GKS+L ++ G SG I GV D +RP
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGV--DHTASPPA--ERPV 73
Query: 524 TAVGTLRDQLIYPLTSDQEVEPLTHGG----------MVELLKNVDLEYLLDRYPPEKEI 573
+ + + L LT Q + G + V L L R P
Sbjct: 74 SMLFQ-ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG---- 128
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV----RAMGTSCI 629
ELS G++QR+ +AR + +LDE SA+ + A V + +
Sbjct: 129 ----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLL 184
Query: 630 TISHRP 635
++H P
Sbjct: 185 MVTHHP 190
|
Length = 231 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 4e-04
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT--------KPSQHIDEEA 1168
++ + G+ + + G NG+GK+++ + + GL P SGS+ P
Sbjct: 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARA- 75
Query: 1169 GSGCGIFYVPQ 1179
GI YVP+
Sbjct: 76 ----GIGYVPE 82
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-04
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 22/192 (11%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSDLNKE 514
+ N++L V G + G +G+GKS+L R + L SG + G S+L K
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 515 ---IFYVPQR-PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
I + Q + T+ + PL D + + ELL V L D YP
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-- 138
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEERFCAKVRAMGT 626
LS G++QR+ +AR PK + DE TSA+ T + E R +G
Sbjct: 139 ------SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL 192
Query: 627 SCITISHRPALV 638
+ + I+H +V
Sbjct: 193 TILLITHEMDVV 204
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 28/177 (15%)
Query: 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
N IE + G ++ L+L + GS + GPNG+GKS+L L G++ G
Sbjct: 2 DNIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGR 61
Query: 502 IAKPGVGSDLNKEIFY--------VPQRPYTAV--GTLRDQLIY-PLT---SDQEVEPLT 547
+ +G ++N E V Q P V T+ D + + P+ EVE
Sbjct: 62 VKV--MGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV 119
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
E LK V + D+ P LS G+++R+ +A + P +LDE
Sbjct: 120 E----EALKAVRMWDFRDKPP--------YHLSYGQKKRVAIAGVLAMDPDVIVLDE 164
|
Length = 274 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 35/172 (20%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG--VGSDLNK- 513
G L+ L+L G + G NGSGKS+L ++LG P G I + S +K
Sbjct: 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA 82
Query: 514 ---EIFYVPQRPYTAVGTLRDQLI----YP---------LTSDQEVEPLTHGGMVELLKN 557
++ Y+PQ+ A G +L+ YP ++VE E +
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVE--------EAISL 134
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
V L+ L R D LS GE+QR +A L + +LDE TSA+
Sbjct: 135 VGLKPLAHRLV--------DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSAL 178
|
Length = 265 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-04
Identities = 57/248 (22%), Positives = 96/248 (38%), Gaps = 49/248 (19%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HI 502
I+ S + V +++ + L V GS + + GPNG+GK++L R + G +G +
Sbjct: 4 IDVSDL-SVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLV 62
Query: 503 AKPGVGS----DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558
A V + ++ + VPQ T L+ + +V + G
Sbjct: 63 AGDDVEALSARAASRRVASVPQ------DT-------SLSFEFDVRQVVEMGRTPHRSRF 109
Query: 559 DLEYLLDRYPPEKEINWGD----------ELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
D DR E+ + LS GE+QR+ +AR +LDE T++
Sbjct: 110 DTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTAS 169
Query: 609 VTTDMEERFCAKVRAMGTSCITISHRPALVAFHD----------VVLSLDGEGEWRVHDK 658
+ + + R VR + + A+ A HD +VL DG RV
Sbjct: 170 LDINHQVRTLELVRRLVD-----DGKTAVAAIHDLDLAARYCDELVLLADG----RVRAA 220
Query: 659 RDGSSVVT 666
+ V+T
Sbjct: 221 GPPADVLT 228
|
Length = 402 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 5e-04
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 42/165 (25%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---------------AKP 505
V ++L V+ G + + GPNG+GK++ F ++ GL SG I A+
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 506 GVGSDLNKEIFYVPQRPYTAVG-TLRDQL-----IYPLTSDQEVEPLTHGGMVELLKNVD 559
G+G Y+PQ T+ + + I L+ + E L ELL+
Sbjct: 76 GIG--------YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKL-----EELLEEFH 122
Query: 560 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+ +L LS GE++R+ +AR PKF +LDE
Sbjct: 123 ITHLRKSK--------ASSLSGGERRRVEIARALATNPKFLLLDE 159
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 6e-04
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 1068 ELEELLDA--AQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVP 1125
L L+ A P E +S +I L+I++P K LA L F +
Sbjct: 323 SLVTFLETPLAHPQQGEKELASNDPV-------TIEAEDLEILSPDGKTLAGPLNFTLPA 375
Query: 1126 GKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
G+ + + GP+G+GK+S+ L G P GSL
Sbjct: 376 GQRIALVGPSGAGKTSLLNALLGFLP-YQGSLK 407
|
Length = 588 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL 1157
L F + G++LLV G NG+GK+++ RVL GL V SG +
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI 68
|
Length = 214 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 6e-04
Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 34/196 (17%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA---------KPGVGSDL 511
++++ L V PG + G NG+GKS+L +VL G+ G I + + L
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 512 NKEIFY----------VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561
I Y V + Y + + +E+ +L V L+
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAA----MMLLRVGLK 136
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA-- 619
LD EK N LS+ +Q L +A+ K I+DE TS++T +
Sbjct: 137 VDLD----EKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIM 188
Query: 620 -KVRAMGTSCITISHR 634
++R GT+ + ISH+
Sbjct: 189 NQLRKEGTAIVYISHK 204
|
Length = 510 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 7e-04
Identities = 58/238 (24%), Positives = 88/238 (36%), Gaps = 60/238 (25%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV----GSDLN 512
++ +L+L++EPG + G NG+GKS+L + L G G A G LN
Sbjct: 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLN 69
Query: 513 KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP---- 568
E P A R + + P Q +P E++ LL RYP
Sbjct: 70 GE----PLAAIDAPRLARLRAVLP----QAAQPAFAFSAREIV-------LLGRYPHARR 114
Query: 569 ------PEKEINWG---------------DELSLGEQQRLGMARLFYH---------KPK 598
+ EI W LS GE R+ AR+ P+
Sbjct: 115 AGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPR 174
Query: 599 FAILDECTSAVTTDMEERFCAKVRAMG----TSCITISHRPALVAFHDVVLSLDGEGE 652
+ +LDE T+A+ + R VR + + I H P L A H +++ +G
Sbjct: 175 YLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGA 232
|
Length = 272 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-04
Identities = 52/156 (33%), Positives = 73/156 (46%), Gaps = 24/156 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRV-LGGLWPLVSGHIAKPGVGSDLNKEI 515
G LV++ + +V+ G + + GPNG GK++L ++ LG L SG I G+ L E+
Sbjct: 331 GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA-DSGRIH---CGTKL--EV 384
Query: 516 FYVPQRPYTAV----GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD-RYPPE 570
Y Q + A T+ D L QEV MV L YL D + P+
Sbjct: 385 AYFDQ--HRAELDPEKTVMDNLA---EGKQEV-------MVNGRPRHVLGYLQDFLFHPK 432
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
+ + LS GE+ RL +ARLF ILDE T
Sbjct: 433 RAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPT 468
|
Length = 635 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 26/219 (11%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
I V P G +EN+ L ++ G + I G NGSGKS+L L GL G +
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61
Query: 505 PGVGS-------DLNKEIFYVPQRPYTA-VG-TLRDQLIYPLTSDQEVEPLTHGGMVELL 555
G+ + + K + V Q P T VG T+ + L + + + P +E+
Sbjct: 62 SGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG-PENLCLPP------IEIR 114
Query: 556 KNVDL---EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612
K VD E L++Y LS G+ Q + +A + +P+ I DE TS + D
Sbjct: 115 KRVDRALAEIGLEKYRHRSP----KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPD 170
Query: 613 MEERFCAKVRAM---GTSCITISHRPALVAFHDVVLSLD 648
+++ + G + + I+H + D ++ +D
Sbjct: 171 SGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMD 209
|
Length = 274 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
+++ ++ G + I G NG+GKS+L +++ G++ SG +
Sbjct: 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
|
Length = 249 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 7e-04
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 30/166 (18%)
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523
++ V PG + + GPNG+GKS+LF +L L+ G I+ G DL + P+
Sbjct: 20 VSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV--AGHDLRRA----PRAAL 73
Query: 524 TAVGTLRDQ--LIYPLTSDQEV----------EPLTHGGMVELLKNVDL-EYLLDRYPPE 570
+G + Q L L+ Q + + ELL + L E D+
Sbjct: 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKV--- 130
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
EL+ G ++R+ +AR H+P +LDE T V D R
Sbjct: 131 ------RELNGGHRRRVEIARALLHRPALLLLDEPT--VGLDPASR 168
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 9e-04
Identities = 50/239 (20%), Positives = 92/239 (38%), Gaps = 68/239 (28%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
++F + G+ + GPNG+GK++ R++ G+ SG + + +D A + G Y
Sbjct: 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIG--Y 74
Query: 1177 VPQ-RPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 1235
+P+ R + DQ++Y A+L+ LK R+
Sbjct: 75 LPEERGLYPKMKVIDQLVY-----LAQLKGLKKEEARR--------------------RI 109
Query: 1236 SYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLF 1295
LER E+ AN E+ LS G QQ++ ++ ++
Sbjct: 110 DEWLERLELSEYANKRVEE-LSKGNQQKVQFIAAVI------------------------ 144
Query: 1296 FPPFSYKARLFFHKPKFGILDECTNA---TSVDVEEQLYRLAKDMGITFVTSSQRPALI 1351
H P+ ILDE + +V++ + + R G T + S+ + L+
Sbjct: 145 ------------HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELV 191
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 9e-04
Identities = 53/212 (25%), Positives = 80/212 (37%), Gaps = 33/212 (15%)
Query: 437 NYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP 496
F + +E V V + L ++ G L + G NGSGKS+L +L GL+
Sbjct: 315 QAFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374
Query: 497 LVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGT---LRDQLIYPLTSDQEVEP------LT 547
SG I G + Y ++ ++AV T L DQL+ P + P L
Sbjct: 375 PQSGEILLDGKPVTAEQPEDY--RKLFSAVFTDFHLFDQLLGP--EGKPANPALVEKWLE 430
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
M L+ D + LS G+++RL + + +LDE
Sbjct: 431 RLKMAHKLELEDGRISNLK------------LSKGQKKRLALLLALAEERDILLLDEW-- 476
Query: 608 AVTTD-MEERFCAKV-----RAMGTSCITISH 633
A D R +V + MG + ISH
Sbjct: 477 AADQDPHFRREFYQVLLPLLQEMGKTIFAISH 508
|
Length = 547 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
I L P + + EI G+ + + GP+G+GKS++ R L GL SG +
Sbjct: 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
|
Length = 258 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 64/273 (23%), Positives = 97/273 (35%), Gaps = 80/273 (29%)
Query: 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 1159
I L P+ K + ++ I PG+ + + GP+G+GKS++ R L GL SGS+
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL- 59
Query: 1160 PSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQI--I---YPLSREEAELRALK--LHGKG 1212
ID + + L LR QI I + L L L+ L G+
Sbjct: 60 ----IDGTD--------INKLKGKALRQLRRQIGMIFQQFNLI---ERLSVLENVLSGR- 103
Query: 1213 EKLVDTTNILDSYLK--TILEGVRLSYLLEREEVGWDANLNWE-DILSLGEQQRLGMVSH 1269
+ + S E R LER VG D LS G+QQR+ +
Sbjct: 104 ---LGRRSTWRSLFGLFPKEEKQRALAALER--VGLLDKAYQRADQLSGGQQQRVAI--- 155
Query: 1270 LVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTN----ATSVD 1325
AR +PK + DE A+S
Sbjct: 156 ---------------------------------ARALMQQPKLILADEPVASLDPASSRQ 182
Query: 1326 VEEQLYRLAKDMGITFVTSSQRPALIPFHSLEL 1358
V + L R+ ++ GIT ++ H ++L
Sbjct: 183 VMDLLKRINREEGIT--------VIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.001
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT--------KPSQHIDEEA 1168
R ++ E+ G+ + + G NG+GK+++ + + GL SG + P
Sbjct: 20 RGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER---- 75
Query: 1169 GSGCGIFYVPQ 1179
+ GI YVP+
Sbjct: 76 -ARLGIAYVPE 85
|
Length = 237 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 0.001
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 1098 DSISFSKLDI-ITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS 1156
D + FS + +TP K ++F++ G+ L V G GSGKSS+ ++ G
Sbjct: 427 DGLFFSNFSLYVTPVLK----NISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE------- 475
Query: 1157 LTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRAL 1206
+PS+ + +G I + PQ + GT++D II+ LS +E ++
Sbjct: 476 -LEPSEGKIKHSGR---ISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSV 521
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 1180
G+ L + GPNG+GK+++ R + GL P G++ I YVPQR
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA---SPGKGWRHIGYVPQR 57
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 61/252 (24%), Positives = 94/252 (37%), Gaps = 84/252 (33%)
Query: 1118 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC----- 1172
+++F++ PG++L + G +GSGKS+ R L L G + Q ID +
Sbjct: 342 KVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRR 401
Query: 1173 GIFYVPQRPYTCLG---TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTI 1229
I ++ Q PY L T+ D I+ P L++HG +
Sbjct: 402 DIQFIFQDPYASLDPRQTVGDSIMEP----------LRVHG------------------L 433
Query: 1230 LEG----VRLSYLLEREEVGWDANLNWE--DILSLGEQQRLGMVSHLVLIQLCSINKISE 1283
L G R+++LLER VG W S G++QR+
Sbjct: 434 LPGKAAAARVAWLLER--VGLLPEHAWRYPHEFSGGQRQRI------------------- 472
Query: 1284 LDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQ----LYRLAKDMGI 1339
C+ AR PK I DE +A V + Q L L +D GI
Sbjct: 473 -------CI----------ARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGI 515
Query: 1340 TFVTSSQRPALI 1351
++ S A++
Sbjct: 516 AYLFISHDMAVV 527
|
Length = 623 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 58/241 (24%), Positives = 90/241 (37%), Gaps = 63/241 (26%)
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSG--- 500
+F G +V+ +N++ +E G L I G +G+GKS L VL G+ + SG
Sbjct: 9 KFDGKEVL--------KNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 501 -HIAK-----------------PGVGSDLNKEI--FYVPQRPYTAVGTLRD----QLIYP 536
H+A P G L E F+ R Q +
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 537 LTSDQEV-----EPLTHGG---------MVELLKNVDLEYLLDRYPPEKEINWGDELSLG 582
L D V E L G V+L++ V L + + + +LS G
Sbjct: 121 LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRI--------THIARDLSGG 172
Query: 583 EQQRLGMARLFYHKPKFAILDECTSAV---TTDM-EERFCAKVRAMGTSCITISHRPALV 638
E+QR+ +AR +P + DE T + T + V+A G S + SH P ++
Sbjct: 173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232
Query: 639 A 639
Sbjct: 233 E 233
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 31/194 (15%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA- 503
I+ GV + V+V +L+ + G + GPNG+GKS++ R+L G+ G I
Sbjct: 5 IDLVGVSK-SYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV 63
Query: 504 ----KPGVGSDLNKEIFYVPQ-----RPYTAVGTLRDQLI----YPLTSDQEVEPLTHGG 550
P I VPQ +T R+ L+ Y S +E+E +
Sbjct: 64 LGEPVPSRARLARVAIGVVPQFDNLDPEFTV----RENLLVFGRYFGMSTREIEAV---- 115
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
+ LL+ LE D LS G ++RL +AR + P+ ILDE T+ +
Sbjct: 116 IPSLLEFARLESKADVRVA--------LLSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
Query: 611 TDMEERFCAKVRAM 624
++R++
Sbjct: 168 PHARHLIWERLRSL 181
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS-----GHIAKPGVG------ 508
+++N+ L + S + GP+G GKS+ R L + L+ GHI GV
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 509 --SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
+L K++ V Q+P ++ D + Y L E + VE +++ L D
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVE--ESLKAAALWDE 135
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
+K LS G+QQRL +AR P+ ++DE SA+
Sbjct: 136 V-KDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSAL 177
|
Length = 250 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 49/199 (24%), Positives = 77/199 (38%), Gaps = 41/199 (20%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG----------------HIAK 504
+ +L+ V+PG ++ GPNG+GK++L V+ G G IA+
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 505 PGVGSDLNKEIFY----VPQRPYTAVG---TLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557
G+G K + V + A+ ++ L L +++ + ELL
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR------IDELLAT 134
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 617
+ L DR LS G++Q L + L PK +LDE A TD E
Sbjct: 135 IGLGDERDRL--------AALLSHGQKQWLEIGMLLAQDPKLLLLDEPV-AGMTDAETEK 185
Query: 618 CA---KVRAMGTSCITISH 633
A K A S + + H
Sbjct: 186 TAELLKSLAGKHSILVVEH 204
|
Length = 249 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 31/161 (19%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
++ ++ +E G + GPNG+GK++ ++L GL SG + G+ ++ F
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKF---L 93
Query: 521 RPYTAVGTLRDQL---------------IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD 565
R V + QL IY L + + L + ELL DLE LLD
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDE--LSELL---DLEELLD 148
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
P + +LSLG++ R +A H+P+ LDE T
Sbjct: 149 T--PVR------QLSLGQRMRAEIAAALLHEPEILFLDEPT 181
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 57/242 (23%), Positives = 90/242 (37%), Gaps = 87/242 (35%)
Query: 1120 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT--------KPSQHIDEEAGSG 1171
+F++ G++L + G +GSGKS++ R+L GL P SGS+ +
Sbjct: 311 SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRR--- 367
Query: 1172 CGIFYVPQRPYTCL---GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKT 1228
I V Q PY+ L T+ D + P LR E+ + +
Sbjct: 368 -RIQMVFQDPYSSLNPRMTVGDILAEP-------LRIHGGGSGAER--------RARVAE 411
Query: 1229 ILEGVRLSY-LLER---EEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISEL 1284
+LE V L L+R E LS G++QR+ +
Sbjct: 412 LLELVGLPPEFLDRYPHE-------------LSGGQRQRVAI------------------ 440
Query: 1285 DWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQ----LYRLAKDMGIT 1340
AR +PK ILDE +A V V+ Q L L +++G+T
Sbjct: 441 ------------------ARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLT 482
Query: 1341 FV 1342
++
Sbjct: 483 YL 484
|
Length = 539 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 49/162 (30%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC---- 1172
L+ + PG+ L + GP+G GK+++ R++ GL SG + ID +G
Sbjct: 17 DDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL-----IDGRDVTGVPPER 71
Query: 1173 -GIFYVPQRP--YTCLGTLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDS 1224
I V Q + L T+ + I + L + E R +
Sbjct: 72 RNIGMVFQDYALFPHL-TVAENIAFGLKLRGVPKAEIRARVRE----------------- 113
Query: 1225 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGM 1266
+LE V L LL R + LS G+QQR+ +
Sbjct: 114 ----LLELVGLEGLLNR----------YPHELSGGQQQRVAL 141
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 42/179 (23%), Positives = 65/179 (36%), Gaps = 28/179 (15%)
Query: 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
I L ++LL ++ ++ PG+ L + GPNG+GKS++ + L G SG +T
Sbjct: 1 MIRAENLSYSLAGRRLLD-GVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVT 59
Query: 1159 KPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDT 1218
++ + L +P + +E H G + +
Sbjct: 60 LNGVPLNSWPPEELARHRAVLPQNSSLA-------FPFTVQEVVQMGRIPHRSGREPEED 112
Query: 1219 TNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHL--VLIQL 1275
I L LS L R+ LS GEQQR+ L VL QL
Sbjct: 113 ERIAAQA----LAATDLSGLAGRD----------YRTLSGGEQQRV----QLARVLAQL 153
|
Length = 259 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 1113 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
KLL L+F++ PG + V GPNG+GKS++FR++ G SG++
Sbjct: 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK 380
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 0.002
Identities = 53/210 (25%), Positives = 85/210 (40%), Gaps = 66/210 (31%)
Query: 442 ANYIEFSGVKV--VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499
A YI ++ +V V P ++++++L PG+ + + G NG+GKS+L R++ G+
Sbjct: 3 AQYI-YTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE 61
Query: 500 GH-IAKPG--VGSDLNKEIFYVPQRPY------------TAVGTLRDQL-----IYPLTS 539
G PG VG Y+PQ P V ++ L IY +
Sbjct: 62 GEARPAPGIKVG--------YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYA 113
Query: 540 DQEVEPLTHGGMVELLK---------------NVD--LEYLLD--RYPPEKEINWGDE-- 578
+ + + L ++D LE +D R PP D
Sbjct: 114 EPDAD------FDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP------WDAKV 161
Query: 579 --LSLGEQQRLGMARLFYHKPKFAILDECT 606
LS GE++R+ + RL KP +LDE T
Sbjct: 162 TKLSGGERRRVALCRLLLEKPDMLLLDEPT 191
|
Length = 556 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 1099 SISFSKLDII----TPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVS 1154
SI F +D I TP +K ++FE+ G + + G GSGKS++ + L S
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 1155 GSLTKPSQHIDEEAGS 1170
G++T HI E G+
Sbjct: 62 GTITIAGYHITPETGN 77
|
Length = 287 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.002
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME---ERFCAKVRAMG-TSCIT 630
+G LS G++QR+ +AR +PK +LDE TS++ ++ E E+ ++ + IT
Sbjct: 1355 YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIIT 1414
Query: 631 ISHRPALVAFHDVVL 645
I+HR A + D ++
Sbjct: 1415 IAHRIASIKRSDKIV 1429
|
Length = 1466 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 34/171 (19%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSS----LFRVL---GGLW----PLVSGHIAKPG 506
NV+V+N++ + PG L + G +GSGKS+ L R++ G +W PL H
Sbjct: 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPL---HNLNRR 355
Query: 507 VGSDLNKEIFYVPQRPYTAVGTLRD--QLI-------YPLTSDQEVEPLTHGGMVELLKN 557
+ I V Q P +++ + Q+I P S + E M E+ +
Sbjct: 356 QLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLD 415
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
+ + RYP E S G++QR+ +AR KP ILDE TS+
Sbjct: 416 PETRH---RYPAE--------FSGGQRQRIAIARALILKPSLIILDEPTSS 455
|
Length = 529 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 27/156 (17%)
Query: 465 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 524
L VE G + I GP+G+GKS+L ++ G SG + G + +RP
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQ----DHTTTPPSRRP-- 72
Query: 525 AVGTL--RDQLIYPLTSDQEVEPLTHGG----------MVELLKNVDLEYLLDRYPPEKE 572
V L + L LT Q + + G + + + + +E LL R P
Sbjct: 73 -VSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP---- 127
Query: 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
+LS G++QR+ +AR + +LDE SA
Sbjct: 128 ----GQLSGGQRQRVALARCLVREQPILLLDEPFSA 159
|
Length = 232 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 445 IEFSGVKVV----TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500
I S TP + L+L++ G + + G NG+GKS+L + G SG
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 501 HI 502
I
Sbjct: 62 QI 63
|
Length = 263 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 35/176 (19%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
++ V+ +++ + L V G +++ GP+G GKS+L R++ GL + SG I
Sbjct: 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWI 63
Query: 505 PG-VGSDL---NKEIFYVPQR----PYTAVGTLRDQLIYPL--------TSDQEVEPLTH 548
G V ++L +++I V Q P+ +V R+ + Y L ++ V
Sbjct: 64 GGRVVNELEPADRDIAMVFQNYALYPHMSV---RENMAYGLKIRGMPKAEIEERVA---- 116
Query: 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
E + ++LE LLDR P ELS G++QR+ M R +P + DE
Sbjct: 117 ----EAARILELEPLLDRKP--------RELSGGQRQRVAMGRAIVREPAVFLFDE 160
|
Length = 356 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 47/207 (22%)
Query: 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---- 502
+SGV+V+ + + + G + G NG+GKS+L +++ G+ P SG +
Sbjct: 21 YSGVEVL--------KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGG 72
Query: 503 -----AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-------VEPLTHGG 550
P L I+ VPQ P L++P S +E +
Sbjct: 73 NPCARLTPAKAHQLG--IYLVPQEP----------LLFPNLSVKENILFGLPKRQASMQK 120
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
M +LL + + LD + G L + ++Q + + R + ILDE T+++T
Sbjct: 121 MKQLLAALGCQLDLD-------SSAG-SLEVADRQIVEILRGLMRDSRILILDEPTASLT 172
Query: 611 TDMEERFCAKVRAM---GTSCITISHR 634
ER +++R + G + ISH+
Sbjct: 173 PAETERLFSRIRELLAQGVGIVFISHK 199
|
Length = 510 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 19/157 (12%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
++++ L+V+ G L+I G NGSGKS++ + + L G + G+ + + ++ +
Sbjct: 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRN 85
Query: 521 RPYTAVGTLRDQLIYPLTSDQ--------EVEPLTHGGMV-ELLKNVDL-EYLLDRYPPE 570
+ +Q++ + + + P V E LK V + EY R+ P
Sbjct: 86 KAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEY--RRHAPH 143
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
LS G++QR+ +A + +P+ I DE T+
Sbjct: 144 L-------LSGGQKQRVAIAGILAMRPECIIFDEPTA 173
|
Length = 280 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 38/169 (22%)
Query: 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS- 1156
++ISFS + L+ ++ G+ + +TG NG+GK+++ ++L GL SGS
Sbjct: 3 ENISFS-----YKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI 57
Query: 1157 -LTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKL 1215
L E S I YV Q L T D + REE L +L E+
Sbjct: 58 LLNGKPIKAKERRKS---IGYVMQDVDYQLFT--DSV-----REELLLGLKELDAGNEQA 107
Query: 1216 VDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1264
+T+L+ + L L ER + LS G++QRL
Sbjct: 108 -----------ETVLKDLDLYALKERHPL----------SLSGGQKQRL 135
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.003
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG-IFYV 1177
++ + G+ + GPNG+GK+++ +++ GL SG + + I +E I Y+
Sbjct: 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYL 78
Query: 1178 PQRPY 1182
P+ P
Sbjct: 79 PEEPS 83
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 34/190 (17%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG-------HIAKPGVGSDL-- 511
++ + L ++ G + + G +G GKS+L ++ GL SG I +PG +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 512 -NKEIF---YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRY 567
N + V + AV + L + + + + E + V L D+
Sbjct: 61 QNYSLLPWLTVRENIALAVDRVLPDL--SKSERRAI-------VEEHIALVGLTEAADKR 111
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE---CTSAVT-TDMEERFCAKVRA 623
P +LS G +QR+ +AR +PK +LDE A+T +++E
Sbjct: 112 P--------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE 163
Query: 624 MGTSCITISH 633
+ + ++H
Sbjct: 164 HRVTVLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.003
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 25/163 (15%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFY 517
++++++ L + PGS + + G NG+GKS+L ++L G VSG I L K I
Sbjct: 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIG-------LAKGI-- 375
Query: 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR-----YPPEKE 572
+ Y A + QL + L +D+ PL H + L + L D + +K
Sbjct: 376 --KLGYFA----QHQLEF-LRADE--SPLQH--LARLAPQELEQKLRDYLGGFGFQGDKV 424
Query: 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
S GE+ RL +A + + +P +LDE T+ + DM +
Sbjct: 425 TEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQ 467
|
Length = 638 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.003
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
L +NL L +E G L I G NG GK++L R L G SG +
Sbjct: 331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
Length = 530 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 56/194 (28%), Positives = 84/194 (43%), Gaps = 24/194 (12%)
Query: 468 VEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQR 521
++PG + I G GSGKSSL + + G I G+ L + + Q
Sbjct: 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQD 103
Query: 522 PYTAVGTLRDQLI--YPLTSDQEVEPLTHGGMVELLKNV--DLEYLLDRYPPEKEINWGD 577
P G++R L T D+ E L + LKN+ L LD E G+
Sbjct: 104 PILFSGSIRFNLDPECKCTDDRLWEALE----IAQLKNMVKSLPGGLDAVVTEG----GE 155
Query: 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM-EERFCAKVRAMG---TSCITISH 633
S+G++Q +AR F K I+DE T+++ DM E KV + +TI+H
Sbjct: 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASI--DMATENILQKVVMTAFADRTVVTIAH 213
Query: 634 RPALVAFHDVVLSL 647
R + + D+VL L
Sbjct: 214 RVSTILDADLVLVL 227
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 44/182 (24%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGV---GSDLN-- 512
+ L +E + GP+G GKS+ R L + L+ G + G SD++
Sbjct: 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80
Query: 513 ---KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN-VDLEYLLDRYP 568
K + V Q+P ++ D + Y P THG +K+ L+ ++++
Sbjct: 81 QLRKRVGMVFQQPNPFPMSIYDNVAY--------GPRTHG-----IKDKKKLDEIVEKSL 127
Query: 569 PEKEINWGDE-----------LSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDM 613
+ W DE LS G+QQRL +AR +P+ ++DE TSA+ T +
Sbjct: 128 KGAAL-W-DEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKI 185
Query: 614 EE 615
EE
Sbjct: 186 EE 187
|
Length = 250 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 44/169 (26%)
Query: 457 GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI------------A 503
G+V++ +++ L + G ++ GP+G GKS+L R++ GL + SG + A
Sbjct: 14 GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA 73
Query: 504 KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT--------SDQEVEPLTHGGMVELL 555
+ GVG Y P+ +V + + + L +Q V + E+L
Sbjct: 74 ERGVGMVFQSYALY----PHLSVA---ENMSFGLKLAGAKKEEINQRVNQVA-----EVL 121
Query: 556 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+ L +LLDR P LS G++QR+ + R +P +LDE
Sbjct: 122 Q---LAHLLDRKP--------KALSGGQRQRVAIGRTLVAEPSVFLLDE 159
|
Length = 369 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.004
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 15/101 (14%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGI 1174
++ + G+ + + GP+G GKS++ R++ GL SG + +D E G G
Sbjct: 21 EDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVL-----VDGEPVTGPGPDR 75
Query: 1175 FYVPQRPYTCLG--TLRDQIIYPL-----SREEAELRALKL 1208
YV Q+ L T+ D + L + EA RA +L
Sbjct: 76 GYVFQQ-DALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.004
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 1113 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
K++ L+F I G+ + GPNG+GKS++ R+L G+ G +T
Sbjct: 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 62
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 22/156 (14%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI------AKPGVGSDLNKEIF 516
+++ + G I G NGSGKS++ +++ G+ + SG I L K I
Sbjct: 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86
Query: 517 YVPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMV----ELLKNVDLEYLLDRYPPEK 571
V Q P VG++ + Y + E + + M E LK VD +L+R E
Sbjct: 87 IVFQNPDNQFVGSI---VKYDVAFGLENHAVPYDEMHRRVSEALKQVD---MLERADYEP 140
Query: 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
LS G++QR+ +A + P ILDE TS
Sbjct: 141 N-----ALSGGQKQRVAIAGVLALNPSVIILDEATS 171
|
Length = 269 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 53/268 (19%), Positives = 96/268 (35%), Gaps = 41/268 (15%)
Query: 245 YASPKY----VFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQL---HSRLRTHA 297
Y SPK V WI+ + G +M E +L+ +Y+ + L +
Sbjct: 144 YLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNR 203
Query: 298 ESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEP 357
E + + + + + +L +W LL +G + L +
Sbjct: 204 ERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNW----SNIMLLGLIG--LVFWLALSL 257
Query: 358 FFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLS---ISSRRLNRLSGYADRIH 414
+A ST A ++ L + + ++S L TL ++ ++ +L A
Sbjct: 258 GWA-------STNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLE-LAPYKA 309
Query: 415 ELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNL 474
+ PQ F + +E V+ V + L ++ G +
Sbjct: 310 DF-----------PRPQ------AFPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELV 352
Query: 475 LITGPNGSGKSSLFRVLGGLWPLVSGHI 502
+ G NGSGKS+L +L GL+ SG I
Sbjct: 353 FLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
|
Length = 546 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.004
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 23/184 (12%)
Query: 445 IEFSGVKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
IEF V P V + N+ K+ G + + G +GSGKS++ +L + + G I
Sbjct: 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLT---SDQEVEP---LTHG-G 550
G + L ++ V Q + T+ + + Y T S +++E + +
Sbjct: 402 LDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMD 461
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
+ + N LD E G LS G++QR+ +AR ILDE TSA+
Sbjct: 462 FINKMDNG-----LDTVIGEN----GVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
Query: 611 TDME 614
T+ E
Sbjct: 513 TESE 516
|
Length = 582 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1374 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PF06472 | 281 | ABC_membrane_2: ABC transporter transmembrane regi | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK12369 | 326 | putative transporter; Reviewed | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.98 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.98 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.98 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.98 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-131 Score=1240.93 Aligned_cols=1133 Identities=19% Similarity=0.229 Sum_probs=750.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 102 MGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTK 181 (1374)
Q Consensus 102 ~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~ 181 (1374)
.+..++.+.++..++.-.....+..+.|++.+++.........+.+..+.+..+...+......|++-..-..-=++.+.
T Consensus 25 ~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~ 104 (1228)
T KOG0055|consen 25 FDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTA 104 (1228)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555556667777788888877655322222333332222222222222334443333333446888
Q ss_pred HHHHHHhhccccccccccCCCC-CChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 000647 182 LIHTRYFENMAYYKISHVDGRI-THPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLG 260 (1374)
Q Consensus 182 ~l~~~yl~~~~~y~~~~~d~~~-~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~ 260 (1374)
++|.+|++..+.+++.|+|... ++..+|+++|++++.+.+.+.+..++..+.+ ++-++.+.++..|.++++++.+.++
T Consensus 105 riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~-fi~g~ii~F~~~W~Ltlv~l~~~Pl 183 (1228)
T KOG0055|consen 105 RIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLAT-FIAGFVIGFYYGWKLTLVMLSFIPL 183 (1228)
T ss_pred HHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998754 6999999999999999999988765554432 3334445556677888888777777
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000647 261 AGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV-VLHDHWWFGMIQD 339 (1374)
Q Consensus 261 ~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~-~~~~~~~~~~~~~ 339 (1374)
.......+++.+.+.+.+++...++.-...++...++.+|.+|+||+.|.+ +|.+..+..++ .+++.++.++...
T Consensus 184 i~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~----ry~~~L~~~~k~gi~~g~~~G~~~G 259 (1228)
T KOG0055|consen 184 IAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIE----RYSKALENALKFGIKKGLFKGLGLG 259 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 666666677888889989998888877777777778888999999999985 55555444433 3455555555433
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccCC-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000647 340 FLLKYLGATVAVILIIEPFFAGNLKPD-TSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMV 418 (1374)
Q Consensus 340 ~~~~~~~~~~~~il~~~~~~~g~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~ 418 (1374)
+...++....+..+ |+++.+... ..+.|.. +. .+.++++. -.+++...+....+.....++.+++++++
T Consensus 260 ~~~~~~~~~~a~~~----WyG~~li~~~~~~~g~v--~~---v~~~vl~g-~~sLgqa~p~l~~f~~a~~aa~~I~~~i~ 329 (1228)
T KOG0055|consen 260 FTFFLLFASYALAF----WYGSTLILNGGYNGGDV--IT---VFFSVLIG-GMSLGQASPHLSAFAKARAAAYRIFETID 329 (1228)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHhcCCCCCceE--EE---EEeehhhh-hhhhhccccchHHHhccccchHHHHHHhc
Confidence 32111111122211 233222111 1122211 00 01112222 24677888888889999999999999998
Q ss_pred hcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCCC--eeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc
Q 000647 419 ISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGN--VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~--~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~ 496 (1374)
..+..+..+ . .........+.|+|+||.|.||..+ ++|+++||+|++|+.++|||||||||||++++|.|+|+
T Consensus 330 ~~~~i~~~~-~----~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd 404 (1228)
T KOG0055|consen 330 RKPSIDPYS-K----GGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD 404 (1228)
T ss_pred CCCCCCccc-c----cCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 877654321 0 0111112357899999999999754 79999999999999999999999999999999999999
Q ss_pred CCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCC
Q 000647 497 LVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570 (1374)
Q Consensus 497 ~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 570 (1374)
|++|+|.+||.+ +++|++||.|.|+|.+|++||+|||.||.++ .+.+++.++++.++.++++..+|.+
T Consensus 405 P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~d------at~~~i~~a~k~ana~~fi~~lp~g 478 (1228)
T KOG0055|consen 405 PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPD------ATREEIEEAAKAANAHDFILKLPDG 478 (1228)
T ss_pred CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCc------ccHHHHHHHHHHccHHHHHHhhHHh
Confidence 999999999976 3578999999999999999999999999754 5788999999999999999999988
Q ss_pred ccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEE
Q 000647 571 KEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVL 645 (1374)
Q Consensus 571 ~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il 645 (1374)
.++ +.|.+|||||||||||||||+++|+||||||||||||+++|+.+.++|.+ .|+|.|+|+||+++++.+|+|+
T Consensus 479 ~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~ 558 (1228)
T KOG0055|consen 479 YDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIA 558 (1228)
T ss_pred hcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEE
Confidence 776 45778999999999999999999999999999999999999999999976 5999999999999999999999
Q ss_pred EecCCCceEEeccCCCccccccccc-c-cccc----ccccchhhhHHHHHhhhhcccCcccCCCCCCc--chhhhhhcCC
Q 000647 646 SLDGEGEWRVHDKRDGSSVVTKSGI-N-MIKS----SETDRQSDAMAVEQAFVTAKKDSAFSNPKAQS--YVSEVIAASP 717 (1374)
Q Consensus 646 ~l~~~g~~~~~~~~~~~~~~~~~~~-~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 717 (1374)
++++ | ..++... +++++...+. . .... ..++...+............+.+. ......+ .........+
T Consensus 559 v~~~-G-~IvE~G~-h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~-~~~~~~~~~~~~~~~~~~~ 634 (1228)
T KOG0055|consen 559 VMEE-G-KIVEQGT-HDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSS-SSPSLSRGSNRSNLLSVKP 634 (1228)
T ss_pred EEEC-C-EEEEecC-HHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhcccccc-ccccccCCccccccccccc
Confidence 9986 3 3444333 3232222121 0 0000 000000000000000000000000 0000000 0000000000
Q ss_pred CCCCCCCCCcCCCCcCCCCcchHHHHhhHhhhccccccchhhHHHH----HHHHHHHHHHHHHHHHhhhchHHHHHHhcC
Q 000647 718 IADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLA----VAFLVVSRTWISDRIASLNGTTVKYVLEQD 793 (1374)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1374)
+.......... .......++++.+.+..++... .|.+.+ ...++++.. ++..+..+.......+ +.
T Consensus 635 --~~e~~~~~~~~--~~~~~s~~~i~k~~~pe~~~l~---lG~i~a~i~G~~~P~fa~~-~s~~~~~f~~~~~~~~--~~ 704 (1228)
T KOG0055|consen 635 --EGEDPEEPVSE--EDEKVSFWRIFKLNKPEWPYLL---LGSLGAAIRGATYPLFAYV-FSQVLEAFYPPDDDEL--KR 704 (1228)
T ss_pred --ccccccccccc--ccccccHHHHHHhccchhHHHH---HHHHHHHHhhhhHHHHHHH-HHHHHHHHhCCChHHH--HH
Confidence 00000000000 0012223444444333333221 222222 222222222 1111221110000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CcceeeecCCCCCCCCccchHHHHHHHH
Q 000647 794 KASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLT 872 (1374)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~-~~f~~~~~~~~~~~d~~~ri~~D~~~l~ 872 (1374)
...+|.+ ++++.+++..+..++-.++....+.+|..|++..+++.+|++ ..|||..+++ ..+..|++.|...+-
T Consensus 705 ~~~~~al--~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns---g~l~~RLa~Da~~vr 779 (1228)
T KOG0055|consen 705 EVRAWAL--IFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS---GALSSRLATDASNVR 779 (1228)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc---hHHHHHHhcchHHHH
Confidence 1112222 222333333344444555667888888888999999999987 5999998776 346889998887553
Q ss_pred H----HHHHHHH---HhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHH-HHhhhhhhhHHH
Q 000647 873 T----DLSGLVT---GMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSR-EQQLEGTFRFMH 944 (1374)
Q Consensus 873 ~----~l~~~~~---~~~~~~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~le~~~r~~~ 944 (1374)
. .+..++. .++..++..++++|+|++++. ++.++..+.+..+.+.. .....+ ....+...+...
T Consensus 780 ~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~l----a~~Pll~~~~~~~~~~~----~~~~~~~~~~~~ea~~iA~ 851 (1228)
T KOG0055|consen 780 AAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVL----ATFPLLILSGYLQKKFL----KGFSKDDKKAYEEASKIAI 851 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHH
Confidence 2 2333333 334455667889999999863 22222222222222221 111111 222344455555
Q ss_pred HHHHHhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhhhcccchhhhh
Q 000647 945 ERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVST 1024 (1374)
Q Consensus 945 ~~l~~~aesIa~~~g~~~e~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 1024 (1374)
|.+. |..||+.|+ .|+++++..-+++..+.+...++.++.|+.+ ...|...+.+++++++|+..+...... +
T Consensus 852 eai~-NIrTV~al~---~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f--~~sqs~~~~~~A~~f~~G~~Li~~g~~--~ 923 (1228)
T KOG0055|consen 852 EAVS-NIRTVAALC---AEEKFMELYKEELEKPRKSSFKRGLISGLGF--GFSQSLLFFVYALSFWYGARLISNGEM--T 923 (1228)
T ss_pred HHHH-hHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHhcCCc--C
Confidence 5553 677888775 6777664444444456777788888888864 345666778889999998654433211 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEee
Q 000647 1025 QGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSK 1104 (1374)
Q Consensus 1025 ~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~ 1104 (1374)
+.++...+ .++.....++++...+.|++.+...++.+||++.++.+..++.+ +....+| ..+|+|+|+|
T Consensus 924 ~~~~~~vf----~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~-----~~~~~~~--~~~G~I~~~~ 992 (1228)
T KOG0055|consen 924 FEDVFRVF----MALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDS-----TSGGKLP--NVKGDIEFRN 992 (1228)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCC-----CCCCccc--cceeEEEEee
Confidence 22222111 12222334555666777888888999999999998765433321 1111222 2589999999
Q ss_pred eEEeCCCc--ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCC
Q 000647 1105 LDIITPSQ--KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQR 1180 (1374)
Q Consensus 1105 V~~~yp~~--~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~ 1180 (1374)
|+|.||++ .+||+|+||+|++||+||+||||||||||++.+|+|||||.+|.|.|||+||+++ +++|++|++|+||
T Consensus 993 V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQE 1072 (1228)
T KOG0055|consen 993 VSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQE 1072 (1228)
T ss_pred eEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccC
Confidence 99999995 5799999999999999999999999999999999999999999999999999998 6999999999999
Q ss_pred CCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChh
Q 000647 1181 PYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLG 1259 (1374)
Q Consensus 1181 P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgG 1259 (1374)
|.||++||||||.||... .+.+++.++++.++.+.++..+|+||||.+ ++|.+||||
T Consensus 1073 P~LF~~TIrENI~YG~~~----------------------vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGG 1130 (1228)
T KOG0055|consen 1073 PVLFNGTIRENIAYGSEE----------------------VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGG 1130 (1228)
T ss_pred chhhcccHHHHHhccCCC----------------------CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCch
Confidence 999999999999999321 122334444555556678888999999998 489999999
Q ss_pred hhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--c
Q 000647 1260 EQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--M 1337 (1374)
Q Consensus 1260 QrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~ 1337 (1374)
||||||| |||++||||||||||||||||.++|+.+|+.+.. .
T Consensus 1131 QKQRIAI------------------------------------ARAilRnPkILLLDEATSALDseSErvVQeALd~a~~ 1174 (1228)
T KOG0055|consen 1131 QKQRIAI------------------------------------ARAILRNPKILLLDEATSALDSESERVVQEALDRAME 1174 (1228)
T ss_pred HHHHHHH------------------------------------HHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc
Confidence 9999999 9999999999999999999999999998887643 6
Q ss_pred CceEEEecCCCCchhhccceEEEEcCC
Q 000647 1338 GITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1338 ~~TvI~IaHRl~~i~~~~~~l~l~~g~ 1364 (1374)
|+|+|+|||||+||+..|.+..+.+|+
T Consensus 1175 gRT~IvIAHRLSTIqnaD~I~Vi~~G~ 1201 (1228)
T KOG0055|consen 1175 GRTTIVIAHRLSTIQNADVIAVLKNGK 1201 (1228)
T ss_pred CCcEEEEecchhhhhcCCEEEEEECCE
Confidence 999999999999999999999997663
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-119 Score=1155.85 Aligned_cols=1109 Identities=18% Similarity=0.215 Sum_probs=701.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLI--SENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIH 184 (1374)
Q Consensus 107 l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l--~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l~ 184 (1374)
++...++..+...+...-|.+.+.+++.+.+.+.+.....+ +..++..++.+++..-..|...++++++|..++..+-
T Consensus 203 ~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY 282 (1381)
T KOG0054|consen 203 FLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIY 282 (1381)
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHH
Confidence 33334444455555777888888888888776333211111 1111111222333344667788999999999988777
Q ss_pred HHHhhccccccccccCCCCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 000647 185 TRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTM 264 (1374)
Q Consensus 185 ~~yl~~~~~y~~~~~d~~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~i 264 (1374)
++-++-...-+ .+...+...+-++.|++++.+....+-... .+++-+++..+.|+...++.....+ +.+++..-+
T Consensus 283 ~K~L~ls~~~~---~~~t~G~ivNlms~D~~ri~~~~~~~h~~w-~~Plqi~~~l~lLy~~LG~sa~~G~-~~~il~~p~ 357 (1381)
T KOG0054|consen 283 RKALRLSNSAR---GETTVGEIVNLMSVDAQRLSDAACFLHLLW-SAPLQIILALYLLYGLLGPSALAGV-AVMVLLIPL 357 (1381)
T ss_pred HhhhcCchhhc---cCCCcchhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHH
Confidence 66553222111 133456778899999999887765442222 2222222222223222222211111 111111112
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 265 MRNFSPAFGKLMSKEQQLEGEYR-QLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLK 343 (1374)
Q Consensus 265 ~~~~~~~l~~l~~~~q~~e~~~r-~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1374)
-.++++...+...++.+. .|-| ...+++.++++.||+|+||+...+++++.-++..+..++...... +..+...
T Consensus 358 n~~~a~~~~~~q~~~m~~-~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~----~~~~~~~ 432 (1381)
T KOG0054|consen 358 NSFLAKKIAKFQKRLMKR-KDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSA----LNSFLNF 432 (1381)
T ss_pred HHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 233444444443332222 2333 466778888999999999999988777766666665554322221 1111111
Q ss_pred HHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 000647 344 YLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL 423 (1374)
Q Consensus 344 ~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~ 423 (1374)
... .+..++....|.. ...+..+.. ..+. ..+++..+-.++..+......+.++....+|+.+++..++..
T Consensus 433 ~~p-~lv~~~tF~~~v~--~~~~~lt~~--~aF~----slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~ 503 (1381)
T KOG0054|consen 433 FSP-VLVSVVTFVVFVL--LLGNLLTAS--TAFT----SLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELD 503 (1381)
T ss_pred HHH-HHHHHHHHHHHhh--ccCccccHh--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 111 1111111111110 001111111 1111 122333334555566666777788888999999998765432
Q ss_pred cccCCCCCCCCCCCccCCCCcEEEeeeEEEcCC--CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccE
Q 000647 424 SIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501 (1374)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~--~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~ 501 (1374)
.. .. .. ......+..++++|.++.+.+ ..+.|+|+||+|++|+.++|+||.|||||||+.+|+|+++..+|+
T Consensus 504 ~~-~~--~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~ 577 (1381)
T KOG0054|consen 504 PD-SV--ER---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGS 577 (1381)
T ss_pred cc-cc--cc---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccce
Confidence 21 10 00 011123457999999997643 345999999999999999999999999999999999999999999
Q ss_pred EEeCCCCccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCcccc---CCCC
Q 000647 502 IAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN---WGDE 578 (1374)
Q Consensus 502 I~~~g~~~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~---~g~~ 578 (1374)
|.++| .++||||.||+++|||||||+||.+ .++++++++++.|.|+++++.+|.++.|+ .|.+
T Consensus 578 v~v~g-------siaYv~Q~pWI~ngTvreNILFG~~-------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGin 643 (1381)
T KOG0054|consen 578 VAVNG-------SVAYVPQQPWIQNGTVRENILFGSP-------YDEERYDKVIKACALKKDLEILPFGDLTEIGERGIN 643 (1381)
T ss_pred EEEcC-------eEEEeccccHhhCCcHHHhhhcCcc-------ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccC
Confidence 99987 5999999999999999999999965 46788999999999999999999888774 5789
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHhhccEEEEecCCCceEE
Q 000647 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGEGEWRV 655 (1374)
Q Consensus 579 LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~~~d~il~l~~~g~~~~ 655 (1374)
|||||||||+||||+|+++||++||+|.||+|.++.+++++.+.. .++|+|+|||.+++++.+|.|++|++ |. +
T Consensus 644 LSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~-G~--I 720 (1381)
T KOG0054|consen 644 LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKD-GK--I 720 (1381)
T ss_pred CcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecC-Ce--E
Confidence 999999999999999999999999999999999999999997754 48999999999999999999999986 33 2
Q ss_pred eccCCCcccccccc-cccc-ccccccchhhhHHHHHhhhhcccCcccCCCCCCcchhhhhhcCCCC---CCCCCCCcCCC
Q 000647 656 HDKRDGSSVVTKSG-INMI-KSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIA---DHNVPLPVFPQ 730 (1374)
Q Consensus 656 ~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 730 (1374)
...+++++...... .... ...+.+...+ ......+... ..........+........ .........+.
T Consensus 721 ~~~Gty~el~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1381)
T KOG0054|consen 721 VESGTYEELLKSGGDFAELAHEEESEQEEE------ASEKDLESGE-SSRESESRSLESLSSEEEKSKDEKEEEDKLVQE 793 (1381)
T ss_pred ecccCHHHHHhcchhHHHHhhccchhhccc------cccccccccc-cccchhhhhhhhhcccccccccccchhhHHHHH
Confidence 22333332221110 0000 0000000000 0000000000 0000000000000000000 00000000001
Q ss_pred CcCCCCcchHHHHh-hHhhhccccccc--hhhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHhcCHHHHHHHHHHHHHH
Q 000647 731 LKSAPRILPLRVAD-MFKVLVPTVFDK--QGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQ 807 (1374)
Q Consensus 731 ~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1374)
..+..+...+.+.. +++...+.+... ....+......+.+.+|++.|.......... . ..-..+++++.+.
T Consensus 794 ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~---~---~~~~~~~~vY~~l 867 (1381)
T KOG0054|consen 794 EERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT---T---VSTSFYLGVYALL 867 (1381)
T ss_pred HHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc---C---CCcchHHHHHHHH
Confidence 11122223333221 111100000000 0111222234456778888887543111000 0 0112245666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHHHHHHHHHhhHhH
Q 000647 808 SAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPS 886 (1374)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~~~~~~~~~ 886 (1374)
+++.+++.....+.....+++...+||++++++++|++ .||+.++.++ +.||++.|++.++..++..+..++..+
T Consensus 868 ~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GR----ILNRFSkD~~~vD~~Lp~~~~~~~~~~ 943 (1381)
T KOG0054|consen 868 GVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGR----ILNRFSKDIDTVDVLLPFTLEFFLQSL 943 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccc----hhhhcccchHHHHHhhHHHHHHHHHHH
Confidence 77777776666777778889999999999999999985 7888766544 699999999999999988777666554
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHh-H------HHhhhcCC
Q 000647 887 VDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAH-A------ESVAFFGG 959 (1374)
Q Consensus 887 ~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~-a------esIa~~~g 959 (1374)
+.++...-.++.++.. +.++.+++.+...+++. .|...+.+.+++|+..|+ ++..| + .+|++|+.
T Consensus 944 ~~~l~~~~vi~~~~P~--fli~~~pl~v~~~~~~~---~Y~~tsReLkRLesitRS---Pi~sh~~Etl~GlsTIRAf~~ 1015 (1381)
T KOG0054|consen 944 LNVLGILVVISYVTPW--FLIAIIPLGVIYYFVQR---YYLATSRELKRLESITRS---PIYSHFSETLQGLSTIRAFGK 1015 (1381)
T ss_pred HHHHHHHHHhhHHhHH--HHHHHHHHHHHHHHHHH---HHHHHhHHHHHhhhcccc---hHHHhHHHHhcCcceeeeccc
Confidence 4433322222222211 11112222222222222 133446677788877664 33333 2 35677762
Q ss_pred cHHHHHHHHHHHHHHHHHH-H----HHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhhhcccchhhhhhhHHHHHHHH
Q 000647 960 GAREKAMIESRFRELLEHS-L----LLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRF 1034 (1374)
Q Consensus 960 ~~~e~~~~~~~~~~ll~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~a~~~ 1034 (1374)
| ..+++.+.+.+|.+ + .....+|+.-.++ ++.. .+.++.++...+...+. ..+|.++.++.+
T Consensus 1016 ---~-~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle-~ig~----~~v~~~al~~vl~~~~~----~~~g~vGLslsy 1082 (1381)
T KOG0054|consen 1016 ---E-ERFIQENDELIDENSRAFFLSISANRWLAVRLE-LLGN----LVVLIAALFAVLLPSGL----ISPGLVGLSLSY 1082 (1381)
T ss_pred ---c-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHccCCC----CCcchHHHHHHH
Confidence 3 34456677777633 2 2234455443333 3322 11222222222211110 124555555543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEE-eCCCcc
Q 000647 1035 LASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDI-ITPSQK 1113 (1374)
Q Consensus 1035 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~-~yp~~~ 1113 (1374)
.. +....+.++++...+...-..+++||.||.+.+++ .|.+ .+...||++||+ +|+|+|+|+++ |.|+.|
T Consensus 1083 al----~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E-~p~~-~~~~~pp~~WP~---~G~I~f~~~~~RYrp~lp 1153 (1381)
T KOG0054|consen 1083 AL----QLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE-APLE-IEESRPPPSWPS---KGEIEFEDLSLRYRPNLP 1153 (1381)
T ss_pred HH----HHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC-CCCC-CcCCCCCCCCCC---CCeEEEEEeEEEeCCCCc
Confidence 32 22233334444433334444689999999987654 2222 222237889998 89999999999 557789
Q ss_pred cccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHH
Q 000647 1114 LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQ 1191 (1374)
Q Consensus 1114 ~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~N 1191 (1374)
+||||+||+|+||||||||||||||||||+++|+|+.||.+|+|.|||+||+++ +++|++|++|||||+||+||+|+|
T Consensus 1154 ~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~N 1233 (1381)
T KOG0054|consen 1154 LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFN 1233 (1381)
T ss_pred chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccc
Confidence 999999999999999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred hccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccch
Q 000647 1192 IIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHL 1270 (1374)
Q Consensus 1192 l~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~ 1270 (1374)
|| |+. +.+|+++|++||.++|++.++++|+|||+.+ +.|++||.||||++|+
T Consensus 1234 LD-Pf~----------------------e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCL---- 1286 (1381)
T KOG0054|consen 1234 LD-PFD----------------------EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCL---- 1286 (1381)
T ss_pred cC-ccc----------------------ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHH----
Confidence 97 764 3678999999999999999999999999997 5799999999999999
Q ss_pred hhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCC
Q 000647 1271 VLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRP 1348 (1374)
Q Consensus 1271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl 1348 (1374)
||||||++|||+|||||+++|.+|+..+|+++|+ .+|||||||||+
T Consensus 1287 --------------------------------ARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl 1334 (1381)
T KOG0054|consen 1287 --------------------------------ARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRL 1334 (1381)
T ss_pred --------------------------------HHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeecc
Confidence 9999999999999999999999999999999986 699999999999
Q ss_pred CchhhccceEEEEcC
Q 000647 1349 ALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1349 ~~i~~~~~~l~l~~g 1363 (1374)
.||-..|++|+|.+|
T Consensus 1335 ~TVmd~DrVlVld~G 1349 (1381)
T KOG0054|consen 1335 NTVMDSDRVLVLDAG 1349 (1381)
T ss_pred chhhhcCeEEEeeCC
Confidence 999999999999555
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-110 Score=1125.74 Aligned_cols=1194 Identities=15% Similarity=0.154 Sum_probs=712.3
Q ss_pred hccccCCCCcccccCCCCCCCccCccccccc-cccccccccccchHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q 000647 42 SRFSSKKPDAFGHYNGLGDSERKPDKAVANR-SNIKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTAL 120 (1374)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~Ll~i~~p~~~~~~~~~l~~~~~l~~~~t~l 120 (1374)
..|++++.+..|.-|-...+....+..-... ...++.+..+.+ +.++++...+. ..+.+++.+++.++....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~i~~i~~~~~~~~ 75 (1466)
T PTZ00265 3 KDQRQKKDNNSGGGNLSIKDEVEKELNKKGTFELYKKIKTQKIP---FFLPFKCLPAS----HRKLLGVSFVCATISGGT 75 (1466)
T ss_pred hhhhhhcccCCCCCcccccccccchhhhcccccccccccccccc---HHHHHhcCCHH----HHHHHHHHHHHHHHHHHH
Confidence 3466677666666555544443111110000 000111113333 44555555432 224455666667777778
Q ss_pred HHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccC
Q 000647 121 SNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVD 200 (1374)
Q Consensus 121 s~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d 200 (1374)
...++.+.+.++|.+...+ ..... .+..++..++..+..|+...+....-++++.+++.+||++....+++|+|
T Consensus 76 ~p~~~~i~g~iid~~~~~~--~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd 149 (1466)
T PTZ00265 76 LPFFVSVFGVIMKNMNLGE--NVNDI----IFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHD 149 (1466)
T ss_pred HHHHHHHHHHHHHHHhccc--hHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc
Confidence 8888899999998764221 11111 11122222334445566666666666679999999999999999999998
Q ss_pred CCCC-ChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000647 201 GRIT-HPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKE 279 (1374)
Q Consensus 201 ~~~~-npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~ 279 (1374)
...+ ...+|+++|++.+.+.+...+..++..++. ++..+.++++.+|.+++++++.+++..++..++++.+.+...+.
T Consensus 150 ~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~-~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~ 228 (1466)
T PTZ00265 150 NNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASA-FLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTS 228 (1466)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7643 667888888888877777766666655443 33344455678999988877776666666666777776666666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000647 280 QQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF 359 (1374)
Q Consensus 280 q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 359 (1374)
++..+++.........++++|+.|++|+.+.+++++......+.. .+.....++...+........+++++ |+
T Consensus 229 ~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~---~k~~~~~~~~~~~~~~~~~~~~~l~~----~~ 301 (1466)
T PTZ00265 229 LLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI---LKANFMESLHIGMINGFILASYAFGF----WY 301 (1466)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 666677777777777889999999999999876665444433322 22222222222211111111111111 12
Q ss_pred cccccC---------CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCC
Q 000647 360 AGNLKP---------DTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSP 430 (1374)
Q Consensus 360 ~g~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~~~~~~~~ 430 (1374)
++.+.. +..+.|. +++.+ ...+ ..+..++.+......+.....+++|+.++++.+++.+....
T Consensus 302 G~~lv~~g~~~~~~~~~~t~g~--v~~~~---~~~l-~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~-- 373 (1466)
T PTZ00265 302 GTRIIISDLSNQQPNNDFHGGS--VISIL---LGVL-ISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDD-- 373 (1466)
T ss_pred HHHHHHcCCcccccccccchhH--HHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC--
Confidence 221111 1123332 22111 1111 22233455566677888889999999999887654321100
Q ss_pred CCCCCCCccCCCCcEEEeeeEEEcCCC--CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeC-CC
Q 000647 431 QRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP-GV 507 (1374)
Q Consensus 431 ~~~~~~~~~~~~~~i~~~~v~~~~~~~--~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~-g~ 507 (1374)
....+....|+++||+|.||+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.
T Consensus 374 -----~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~ 448 (1466)
T PTZ00265 374 -----GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSH 448 (1466)
T ss_pred -----CccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCc
Confidence 0001112369999999999863 479999999999999999999999999999999999999999999995 54
Q ss_pred C------ccccccEEEEecCCCCCcCCHHHHhcCCCCCC-----------------------------------------
Q 000647 508 G------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSD----------------------------------------- 540 (1374)
Q Consensus 508 ~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~----------------------------------------- 540 (1374)
+ ..++++|+||||+|.+|++|++|||.++....
T Consensus 449 ~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 449 NLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred chhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 3 23578899999999999999999999974210
Q ss_pred ----------cccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 000647 541 ----------QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607 (1374)
Q Consensus 541 ----------~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEpts 607 (1374)
......+++++.++++.++++++++++|.+.++ +.+.+|||||||||+|||||+++|++||||||||
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTS 608 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATS 608 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 000134678899999999999999999987665 3467999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHh----cCCEEEEEccChhhHhhccEEEEecCC--C------------------------------
Q 000647 608 AVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE--G------------------------------ 651 (1374)
Q Consensus 608 aLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~~~d~il~l~~~--g------------------------------ 651 (1374)
+||+++++.+.+.+++ .|+|+|+||||++.++.+|+|++|+++ |
T Consensus 609 aLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1466)
T PTZ00265 609 SLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNN 688 (1466)
T ss_pred ccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccccc
Confidence 9999999999988865 379999999999999999999999762 1
Q ss_pred -------------ceEEeccCCCccccc-ccc-cc-ccccccccchhhhHHHHHhhhhcccCcccCCCCCCcchhhhh--
Q 000647 652 -------------EWRVHDKRDGSSVVT-KSG-IN-MIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVI-- 713 (1374)
Q Consensus 652 -------------~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 713 (1374)
+..++.+ ++.+++. ..+ +. ................. .............+..........
T Consensus 689 ~~~~~~~~~~~~g~~ive~G-th~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1466)
T PTZ00265 689 NNNNNNNKINNAGSYIIEQG-THDALMKNKNGIYYTMINNQKVSSKKSSNNDN-DKDSDMKSSAYKDSERGYDPDEMNGN 766 (1466)
T ss_pred cccccccccccCCceeEeeC-CHHHHHhccCCcHHHHHhhhcccccccccccc-cccccccccccccccccccccccccc
Confidence 1122211 1111110 000 00 00000000000000000 000000000000000000000000
Q ss_pred --hc-------C-CCC-----CCC-C--CCCcCCCC-cCCCCcchHHHHhhHhhhccccccchhhHHH----HHHHHHHH
Q 000647 714 --AA-------S-PIA-----DHN-V--PLPVFPQL-KSAPRILPLRVADMFKVLVPTVFDKQGAQLL----AVAFLVVS 770 (1374)
Q Consensus 714 --~~-------~-~~~-----~~~-~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~ 770 (1374)
.. . +.. ... . +.+..... ...+ ..+..+..+++.+++.......+.++ +.+.+++.
T Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (1466)
T PTZ00265 767 SKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKP-KAPNNLRIVYREIFSYKKDVTIIALSILVAGGLYPVFA 845 (1466)
T ss_pred ccccccccccccccccccccccchhccccchhhhhcccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 000 000 0 00000000 0000 01111111122222211100011111 11111111
Q ss_pred HHHHHHHHHhhhchHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-ccee
Q 000647 771 RTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYK 849 (1374)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~ 849 (1374)
. .++..+...... ... .....++ ..+.++.+++..++.+...++..+++.++..++..++++++++.+ .||+
T Consensus 846 ~-~~~~~i~~~~~~--~~~--~~~~~~~--~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd 918 (1466)
T PTZ00265 846 L-LYAKYVSTLFDF--ANL--EANSNKY--SLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFD 918 (1466)
T ss_pred H-HHHHHHHHHhcc--hHH--HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC
Confidence 1 111111111000 000 0001111 122222333344444555666777788888888888888888875 7887
Q ss_pred eecCCCCCCCCccchHHHHHHHHHHHHHHH----H---HhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-
Q 000647 850 VFNMSSKSIDADQRITHDLEKLTTDLSGLV----T---GMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRS- 921 (1374)
Q Consensus 850 ~~~~~~~~~d~~~ri~~D~~~l~~~l~~~~----~---~~~~~~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~- 921 (1374)
..+.++ .+..+|++.|++.+...+...+ . .++..++.+++++|+++++.. + .++++...+.+.
T Consensus 919 ~~~~~~--G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~----~---~~~~~~~~~~~~~ 989 (1466)
T PTZ00265 919 QDKHAP--GLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLT----G---TYFIFMRVFAIRA 989 (1466)
T ss_pred CCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHH
Confidence 532322 3467999999987765433222 1 122233445677887766531 1 111111111110
Q ss_pred hc---Ccccccc-----------HHHHhhhhhhhHHHHHHHHhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000647 922 VT---PEFGDLT-----------SREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLL-LKKKW 986 (1374)
Q Consensus 922 ~~---~~~~~~~-----------~~~~~le~~~r~~~~~l~~~aesIa~~~g~~~e~~~~~~~~~~ll~~~~~~-~~~~~ 986 (1374)
.. ....... ...+..+.......|.+ .+.++|..|+.+..+ .++|.+..+..... .+..+
T Consensus 990 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l-~gi~tVka~~~e~~~----~~~~~~~~~~~~~~~~~~~~ 1064 (1466)
T PTZ00265 990 RLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAF-YNMNTVIIYGLEDYF----CNLIEKAIDYSNKGQKRKTL 1064 (1466)
T ss_pred HHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHH-hcHHHHHHhcchHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000 00000001111222222 245677778743333 24455555433222 22222
Q ss_pred HhhhHHHHHHhhhhhHHHHHHHHHHHhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 987 LFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRI 1066 (1374)
Q Consensus 987 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri 1066 (1374)
+.++...+ .++...+..++.++|+........ .+.+.+...+. ++......++.+....+.+.....+.+|+
T Consensus 1065 ~~~~~~~~--~~~~~~~~~~~~~~~G~~lv~~g~--it~g~l~~~~~----~~~~~~~~~~~l~~~~~~~~~a~~a~~ri 1136 (1466)
T PTZ00265 1065 VNSMLWGF--SQSAQLFINSFAYWFGSFLIRRGT--ILVDDFMKSLF----TFLFTGSYAGKLMSLKGDSENAKLSFEKY 1136 (1466)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22332211 122233334455566543221111 12233222111 11112223455667777888888999999
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCC-CCCCCCCCEEEeeeEEeCCCc--ccccccceEEEeCCCeEEEEcCCCCcHHHHH
Q 000647 1067 FELEELLDAAQPGDDEISGSSQHKW-NSTDYQDSISFSKLDIITPSQ--KLLARQLTFEIVPGKSLLVTGPNGSGKSSVF 1143 (1374)
Q Consensus 1067 ~~l~~~~~~~~~~~~~~~~~~~~~w-~~~~~~g~I~f~~V~~~yp~~--~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~ 1143 (1374)
+++++..++.+.. +... ... +.....|.|+|+||+|.||++ ++||+|+||+|+|||++|||||||||||||+
T Consensus 1137 ~~ll~~~~~~~~~---~~~~--~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~ 1211 (1466)
T PTZ00265 1137 YPLIIRKSNIDVR---DNGG--IRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVM 1211 (1466)
T ss_pred HHHHCCCCcCCCC---CCcc--cccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHH
Confidence 9998653221110 0000 000 011236889999999999963 4899999999999999999999999999999
Q ss_pred HHHhcCCCC------------------------------------------------------CCCeEecCCCccccc--
Q 000647 1144 RVLRGLWPV------------------------------------------------------VSGSLTKPSQHIDEE-- 1167 (1374)
Q Consensus 1144 ~~L~rl~~~------------------------------------------------------~~G~I~idg~dI~~~-- 1167 (1374)
++|.|||+| .+|+|++||+||+++
T Consensus 1212 ~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~ 1291 (1466)
T PTZ00265 1212 SLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNL 1291 (1466)
T ss_pred HHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCH
Confidence 999999999 599999999999998
Q ss_pred cCCcccEEEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCc
Q 000647 1168 AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWD 1247 (1374)
Q Consensus 1168 ~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gld 1247 (1374)
..+|++|+||||||+||+|||||||.|+.+ +..|++++++++.++++++++++|+|||
T Consensus 1292 ~~lR~~i~~V~Qep~LF~gTIreNI~~g~~----------------------~at~eeI~~A~k~A~l~~fI~~LP~Gyd 1349 (1466)
T PTZ00265 1292 KDLRNLFSIVSQEPMLFNMSIYENIKFGKE----------------------DATREDVKRACKFAAIDEFIESLPNKYD 1349 (1466)
T ss_pred HHHHhhccEeCCCCccccccHHHHHhcCCC----------------------CCCHHHHHHHHHHcCCHHHHHhCccccC
Confidence 578999999999999999999999999743 2356778889999999999999999999
Q ss_pred cccc-cccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHH
Q 000647 1248 ANLN-WEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDV 1326 (1374)
Q Consensus 1248 t~~~-~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~ 1326 (1374)
|.++ .|.+||||||||||| ||||+|+|+||||||||||||.++
T Consensus 1350 T~VGe~G~~LSGGQkQRIaI------------------------------------ARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265 1350 TNVGPYGKSLSGGQKQRIAI------------------------------------ARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred CccCCCCCcCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCcccccCHHH
Confidence 9984 789999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHh----cCceEEEecCCCCchhhccceEEEEcCC
Q 000647 1327 EEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1327 e~~l~~~~~~----~~~TvI~IaHRl~~i~~~~~~l~l~~g~ 1364 (1374)
|+.+++.+.. .++|+|+||||+++++..|+++.|.+|+
T Consensus 1394 E~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~ 1435 (1466)
T PTZ00265 1394 EKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPD 1435 (1466)
T ss_pred HHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCC
Confidence 9998876653 3899999999999999999999997643
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-109 Score=1130.02 Aligned_cols=1099 Identities=16% Similarity=0.163 Sum_probs=651.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH--HHHHHH--HHHHHHHHHHHHHHH
Q 000647 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMH--STSKYI--TGTLSLQFRKIVTKL 182 (1374)
Q Consensus 107 l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~--~~~~yl--~~~l~~~~R~~lt~~ 182 (1374)
++..+++.++...+.+..|.+.+.+++.+.+++.+ ....+. .+++ ++..++. ....|. ..+++.+.|..+...
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~-~~~~~~-~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~ 379 (1622)
T PLN03130 303 FWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA-WIGYIY-AFSI-FVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAA 379 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-hHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777888888999999999988765532 111111 1111 1111111 112232 345666666655554
Q ss_pred HHHHHhhccccccccccCC-CCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHH
Q 000647 183 IHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILA-YVLG 260 (1374)
Q Consensus 183 l~~~yl~~~~~y~~~~~d~-~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~-~~~~ 260 (1374)
+ +++....+...+.+ ..++..+++++|++++.+.... +..+...++..++..+.+.. ..++..++.+ .+++
T Consensus 380 i----~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~~--~lg~~~l~g~~v~~l 452 (1622)
T PLN03130 380 V----FRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLYQ--QLGVASLIGSLMLVL 452 (1622)
T ss_pred H----HHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4 44544444444433 3568889999999998877633 33333333333222222211 1112111111 1111
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 261 AGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDF 340 (1374)
Q Consensus 261 ~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 340 (1374)
...+..++.+.+.+...+..+...+.-.....+.++++.||+|++|+...+++++..++..+..++.. ....+..+
T Consensus 453 ~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~----~~~~~~~~ 528 (1622)
T PLN03130 453 MFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQ----LLSAFNSF 528 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 11122334555555554444444444456667777899999999999988777665555444333221 11111111
Q ss_pred HHHHHHHHHHHHHhhh-hhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000647 341 LLKYLGATVAVILIIE-PFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVI 419 (1374)
Q Consensus 341 ~~~~~~~~~~~il~~~-~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~ 419 (1374)
+.......++++.+.. .+..| ..+.|. +++. ..++..+..++..+......+.+...+.+|+.++++.
T Consensus 529 ~~~~~~~~v~~~~fg~~~~~~g-----~Lt~g~--vf~~----l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~ 597 (1622)
T PLN03130 529 ILNSIPVLVTVVSFGVFTLLGG-----DLTPAR--AFTS----LSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLA 597 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-----CCCHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1111111111111100 01122 224443 2222 2233344456666777778889999999999999865
Q ss_pred cccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCC--CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC
Q 000647 420 SRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL 497 (1374)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~--~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~ 497 (1374)
++.....+.. .....+.|+++|++|.|++ ++++|+|+||+|++||.++|+||||||||||+++|+|+++|
T Consensus 598 ~e~~~~~~~~--------~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~ 669 (1622)
T PLN03130 598 EERVLLPNPP--------LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP 669 (1622)
T ss_pred cccccccCCc--------ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 4322110000 0011246999999999975 36799999999999999999999999999999999999999
Q ss_pred Cc-cEEEeCCCCccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---
Q 000647 498 VS-GHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI--- 573 (1374)
Q Consensus 498 ~~-G~I~~~g~~~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~--- 573 (1374)
.+ |+|.+. ++|+||||+||+|++||||||.|+.+ .+++++.++++.|+|+++++.+|.++++
T Consensus 670 ~~GG~I~l~-------~~Iayv~Q~p~LfngTIreNI~fg~~-------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IG 735 (1622)
T PLN03130 670 RSDASVVIR-------GTVAYVPQVSWIFNATVRDNILFGSP-------FDPERYERAIDVTALQHDLDLLPGGDLTEIG 735 (1622)
T ss_pred CCCceEEEc-------CeEEEEcCccccCCCCHHHHHhCCCc-------ccHHHHHHHHHHhCcHHHHHhCCCccccccc
Confidence 99 999864 47999999999999999999999854 3577899999999999999999988776
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH-Hh--cCCEEEEEccChhhHhhccEEEEecCC
Q 000647 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-RA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1374)
Q Consensus 574 ~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l-~~--~~~TiI~vtH~~~~~~~~d~il~l~~~ 650 (1374)
+.|.+|||||||||+||||+|++|+++||||||||||+++++++++.+ +. .++|+|+|||+++.++.+|+|++|++
T Consensus 736 e~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~- 814 (1622)
T PLN03130 736 ERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHE- 814 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeC-
Confidence 457799999999999999999999999999999999999999987654 33 58999999999999999999999985
Q ss_pred CceEEeccCCCcccccccc-cc-cccccc-ccchhhhHHHHHhhhhcccCcccCCCCCCcchhhhhhcCCCCCCCCCCCc
Q 000647 651 GEWRVHDKRDGSSVVTKSG-IN-MIKSSE-TDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPV 727 (1374)
Q Consensus 651 g~~~~~~~~~~~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1374)
|. ..+. ++++......+ +. ...... .+....... . . ...................+. ..............
T Consensus 815 G~-i~e~-Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 888 (1622)
T PLN03130 815 GM-IKEE-GTYEELSNNGPLFQKLMENAGKMEEYVEENG-E-E-EDDQTSSKPVANGNANNLKKD-SSSKKKSKEGKSVL 888 (1622)
T ss_pred CE-EEEe-CCHHHHHhcchhHHHHHHhcccccccccccc-c-c-ccccccccccccccccccccc-ccccccccccchhh
Confidence 43 2222 22222111110 00 000000 000000000 0 0 000000000000000000000 00000000000000
Q ss_pred CCCCcCCCCcchHHHH-hhHhhhcccccc--chhhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHhcCHHHHHHHHHHH
Q 000647 728 FPQLKSAPRILPLRVA-DMFKVLVPTVFD--KQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVS 804 (1374)
Q Consensus 728 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1374)
.....+..+...+.+. .+++.....+.. .....++...+.+++.+|++.|....... .+...+ +++++
T Consensus 889 ~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~-------~~~~~~--~~~i~ 959 (1622)
T PLN03130 889 IKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPK-------THGPLF--YNLIY 959 (1622)
T ss_pred hhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-------CCchhH--HHHHH
Confidence 0001111121122211 111110000000 00011111222234556776665432110 011111 22333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHHHHHHHHHhh
Q 000647 805 VLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMV 883 (1374)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~~~~~~ 883 (1374)
++.+++..++.....++..+.+.+...++|.++++++++.+ .||+..+. .++.+|++.|++.++..++..+..++
T Consensus 960 ~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~----G~IlnR~s~Di~~id~~l~~~~~~~~ 1035 (1622)
T PLN03130 960 ALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPL----GRIINRFAKDLGDIDRNVAVFVNMFL 1035 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCc----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444555667788888999999999999975 78874433 45789999999999876654433332
Q ss_pred HhH-------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhh-----hhhHHHHHHHHhH
Q 000647 884 KPS-------VDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEG-----TFRFMHERLRAHA 951 (1374)
Q Consensus 884 ~~~-------~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~-----~~r~~~~~l~~~a 951 (1374)
..+ +.+.+..|. ..+. .++++++++.+...+.+ ...+..+++. .+....|.+. ..
T Consensus 1036 ~~~~~~i~~~i~i~~~~~~-~~~~---~~pl~~~~~~~~~~~~~--------~~r~~~r~~~~~~s~~~~~~~Etl~-Gi 1102 (1622)
T PLN03130 1036 GQIFQLLSTFVLIGIVSTI-SLWA---IMPLLVLFYGAYLYYQS--------TAREVKRLDSITRSPVYAQFGEALN-GL 1102 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcchHHHHHHHHhC-CH
Confidence 221 112222221 1110 11111111111111111 1112222221 2222333333 45
Q ss_pred HHhhhcCCcHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhhhcccchh-hhhh
Q 000647 952 ESVAFFGGGAREKAMIESRFRELLEHSLLL-----LKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRAL-VSTQ 1025 (1374)
Q Consensus 952 esIa~~~g~~~e~~~~~~~~~~ll~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~-~~~~ 1025 (1374)
.+|..|+. |+ .+.+.+.+.++..... ...+|+...++ ++.. .+.+..+ .++....+.... ....
T Consensus 1103 ~tIraf~~---~~-~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~-~~~~----~~i~~~~-~~~v~~~~~~~~~~~~~ 1172 (1622)
T PLN03130 1103 STIRAYKA---YD-RMAEINGRSMDNNIRFTLVNMSSNRWLAIRLE-TLGG----LMIWLTA-SFAVMQNGRAENQAAFA 1172 (1622)
T ss_pred HHHHhCcH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHH-HHHHHcccccccchhhh
Confidence 77888873 33 2344455555433211 12233322221 1111 1111111 111111110000 0001
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeee
Q 000647 1026 GELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKL 1105 (1374)
Q Consensus 1026 ~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V 1105 (1374)
+.++.++. ...+....+..+......+.....+++|+.++.+.+++.+. ..+...+++.||. +|.|+|+||
T Consensus 1173 ~~~G~~ls----~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~--~~~~~~~~~~wp~---~g~I~f~nV 1243 (1622)
T PLN03130 1173 STMGLLLS----YALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPL--VIENNRPPPGWPS---SGSIKFEDV 1243 (1622)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccc--cccCCCCCCCCCC---CCcEEEEEE
Confidence 11222221 12223334444555555566677899999999765332211 0111234557876 689999999
Q ss_pred EEeCCC-cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCC
Q 000647 1106 DIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPY 1182 (1374)
Q Consensus 1106 ~~~yp~-~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~ 1182 (1374)
+|+|+. .++||+|+||+|+||||||||||||||||||+++|+|||+|.+|+|.+||+||+++ +.+|++|++|||||+
T Consensus 1244 sf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~ 1323 (1622)
T PLN03130 1244 VLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPV 1323 (1622)
T ss_pred EEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCc
Confidence 998854 57899999999999999999999999999999999999999999999999999998 688999999999999
Q ss_pred CCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhh
Q 000647 1183 TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQ 1261 (1374)
Q Consensus 1183 Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQr 1261 (1374)
||+|||||||++.. +..|++++++++.++++++++++|+||||.+ +.|.+||||||
T Consensus 1324 LF~GTIreNLd~~~-----------------------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQr 1380 (1622)
T PLN03130 1324 LFSGTVRFNLDPFN-----------------------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQR 1380 (1622)
T ss_pred cccccHHHHhCcCC-----------------------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHH
Confidence 99999999998542 1357889999999999999999999999998 47899999999
Q ss_pred hhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCc
Q 000647 1262 QRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGI 1339 (1374)
Q Consensus 1262 Qrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~ 1339 (1374)
||||| ||||+|+||||||||||||||.++|+.+++.+++ .+|
T Consensus 1381 QrlaL------------------------------------ARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~ 1424 (1622)
T PLN03130 1381 QLLSL------------------------------------ARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 1424 (1622)
T ss_pred HHHHH------------------------------------HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 99999 9999999999999999999999999999998765 589
Q ss_pred eEEEecCCCCchhhccceEEEEcC
Q 000647 1340 TFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1340 TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
|+|+||||++++...|+++.|.+|
T Consensus 1425 TvI~IAHRL~tI~~~DrIlVLd~G 1448 (1622)
T PLN03130 1425 TMLIIAHRLNTIIDCDRILVLDAG 1448 (1622)
T ss_pred EEEEEeCChHHHHhCCEEEEEECC
Confidence 999999999999999999999655
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-109 Score=1127.26 Aligned_cols=1097 Identities=16% Similarity=0.158 Sum_probs=652.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 000647 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHS----TSKYITGTLSLQFRKIVTKL 182 (1374)
Q Consensus 107 l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~----~~~yl~~~l~~~~R~~lt~~ 182 (1374)
++..+++.++.+.+....|.+.+.+++.+.+.+.+. ... . +.++.++..++.. -..+...+++.+.|..+...
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~~-~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~ 379 (1495)
T PLN03232 303 FWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPAW-VGY-V-YAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAA 379 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-hHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455567888888889999999999887655322 111 1 1112222222221 12233356667666666555
Q ss_pred HHHHHhhccccccccccCC-CCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HH
Q 000647 183 IHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYV-LG 260 (1374)
Q Consensus 183 l~~~yl~~~~~y~~~~~d~-~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~-~~ 260 (1374)
+.+ +....+...+++ ..++..+|+++|++++.+... .+..+...++..++..+.++. ..++..++.+.+ ++
T Consensus 380 i~~----k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~~~l~~--~lg~~~l~~~~v~~l 452 (1495)
T PLN03232 380 IFH----KSLRLTHEARKNFASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSMVLLYQ--QLGVASLFGSLILFL 452 (1495)
T ss_pred HHH----HHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHH
Confidence 544 444444443333 356888999999999887653 333333333322222222211 111111111111 11
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 261 AGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDF 340 (1374)
Q Consensus 261 ~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 340 (1374)
...+..++++...+...+.++...+.......+.++++.||+|++|+.+.+++++..++..+..++.... .++ ..+
T Consensus 453 ~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~---~~~-~~~ 528 (1495)
T PLN03232 453 LIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLL---SAF-NSF 528 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHH
Confidence 1112233455555555555554444445666777789999999999999877776665555444332211 111 111
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000647 341 LLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVIS 420 (1374)
Q Consensus 341 ~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~ 420 (1374)
+.......+. ++....+. +..+..+.|. +++. ..++..+..++..+......+.+...+.+|+.++++.+
T Consensus 529 ~~~~~~~~~~-~~~fg~~~---v~~~~lt~g~--vf~~----l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~ 598 (1495)
T PLN03232 529 ILNSIPVVVT-LVSFGVFV---LLGGDLTPAR--AFTS----LSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSE 598 (1495)
T ss_pred HHHHHHHHHH-HHHHHHHH---HhCCCCCHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 1111111111 11111110 0111224443 2222 22334444566677777788899999999999998755
Q ss_pred ccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCC--CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCC
Q 000647 421 RELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV 498 (1374)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~--~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~ 498 (1374)
++..... . . .....+.++++|++|.|++ ++++|+|+||+|++||.++|+||||||||||+++|+|+++|.
T Consensus 599 ~~~~~~~--~----~--~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~ 670 (1495)
T PLN03232 599 ERILAQN--P----P--LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA 670 (1495)
T ss_pred ccccccc--C----C--cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc
Confidence 4321100 0 0 0011246999999999975 367999999999999999999999999999999999999999
Q ss_pred ccEEEeCCCCccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cC
Q 000647 499 SGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NW 575 (1374)
Q Consensus 499 ~G~I~~~g~~~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~ 575 (1374)
+|.+. .++++|+||||+||+|++||||||.|+.+ .++++++++++.|+|+++++.+|.++++ +.
T Consensus 671 ~G~i~------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-------~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~ 737 (1495)
T PLN03232 671 ETSSV------VIRGSVAYVPQVSWIFNATVRENILFGSD-------FESERYWRAIDVTALQHDLDLLPGRDLTEIGER 737 (1495)
T ss_pred CCCEE------EecCcEEEEcCccccccccHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCC
Confidence 98764 24568999999999999999999999853 4678899999999999999999988776 45
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH-Hh--cCCEEEEEccChhhHhhccEEEEecCCCc
Q 000647 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-RA--MGTSCITISHRPALVAFHDVVLSLDGEGE 652 (1374)
Q Consensus 576 g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l-~~--~~~TiI~vtH~~~~~~~~d~il~l~~~g~ 652 (1374)
|.+|||||||||+||||+|++|+|+||||||||||+++++++++.+ +. .++|+|+|||+++.++.+|+|++|++ |.
T Consensus 738 G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~-G~ 816 (1495)
T PLN03232 738 GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSE-GM 816 (1495)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeC-CE
Confidence 7799999999999999999999999999999999999999998764 33 58999999999999999999999985 33
Q ss_pred eEEeccCCCcccccccc-cc-cccccc--ccchhhhHHHHHhhhhcccCcccCCCCCCcchhhhhhcCCCCCCCCCCCcC
Q 000647 653 WRVHDKRDGSSVVTKSG-IN-MIKSSE--TDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVF 728 (1374)
Q Consensus 653 ~~~~~~~~~~~~~~~~~-~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1374)
..+. ++++......+ +. ...... ++........+ ... .... ........ ... ..+...........
T Consensus 817 -i~~~-Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~--~~~~-~~~~~~~~--~~~--~~~~~~~~~~~~~~ 886 (1495)
T PLN03232 817 -IKEE-GTFAELSKSGSLFKKLMENAGKMDATQEVNTNDE-NIL--KLGP-TVTIDVSE--RNL--GSTKQGKRGRSVLV 886 (1495)
T ss_pred -EEEe-cCHHHHHhcchhHHHHHHhccccccccccccccc-ccc--cccc-cccccccc--ccc--ccccccccchhhhh
Confidence 3322 22222111110 00 000000 00000000000 000 0000 00000000 000 00000000000000
Q ss_pred CCCcCCCCcchHHH-HhhHhhhccccccc--hhhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHhcCHHHHHHHHHHHH
Q 000647 729 PQLKSAPRILPLRV-ADMFKVLVPTVFDK--QGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSV 805 (1374)
Q Consensus 729 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1374)
....++.+...+.. ..+++.....+... ....++......+..+|++.|....... ..... .++++++
T Consensus 887 ~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~-------~~~~~--~~l~~y~ 957 (1495)
T PLN03232 887 KQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPK-------SYSPG--FYIVVYA 957 (1495)
T ss_pred hHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-------CCCcc--hHHHHHH
Confidence 00111111112211 11111111000000 0001111122234566777665421100 00011 1234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHHHHHHHHHhhH
Q 000647 806 LQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVK 884 (1374)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~~~~~~~ 884 (1374)
+.+++..++.....++..+.+.++..++|.++++++++.+ .||+..+. .++.+|+++|++.++..++..+..++.
T Consensus 958 ~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~----G~ilnr~s~Di~~id~~l~~~~~~~~~ 1033 (1495)
T PLN03232 958 LLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPT----GRVINRFSKDIGDIDRNVANLMNMFMN 1033 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCc----hHHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence 4444444444455556677788888999999999999975 78874433 457899999999998877654443332
Q ss_pred hHH-------HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhh-----hhhhHHHHHHHHhHH
Q 000647 885 PSV-------DILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLE-----GTFRFMHERLRAHAE 952 (1374)
Q Consensus 885 ~~~-------~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le-----~~~r~~~~~l~~~ae 952 (1374)
.++ .+++..+. ..+. .+++++.++.....+.+ ...+.++.+ ..+....|.+. ..+
T Consensus 1034 ~~~~~i~~~i~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~s~~~~~~~E~l~-G~~ 1100 (1495)
T PLN03232 1034 QLWQLLSTFALIGTVSTI-SLWA---IMPLLILFYAAYLYYQS--------TSREVRRLDSVTRSPIYAQFGEALN-GLS 1100 (1495)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcChHHHHHHHHhc-ChH
Confidence 211 11111111 0100 01111111111111111 111122221 12223333332 457
Q ss_pred HhhhcCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhhhcccchh-hhhhh
Q 000647 953 SVAFFGGGAREKAMIESRFRELLEHSLLLL-----KKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRAL-VSTQG 1026 (1374)
Q Consensus 953 sIa~~~g~~~e~~~~~~~~~~ll~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~-~~~~~ 1026 (1374)
+|+.|+. |+. +.+.+.+..+...... ...|+.... ..+. ..+.+..+ .+.....+.... ....+
T Consensus 1101 tIraf~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~-~~~~----~~~~~~~~-~~~v~~~~~~~~~~~~~~ 1170 (1495)
T PLN03232 1101 SIRAYKA---YDR-MAKINGKSMDNNIRFTLANTSSNRWLTIRL-ETLG----GVMIWLTA-TFAVLRNGNAENQAGFAS 1170 (1495)
T ss_pred HHhcCCc---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHH-HHHHHccccccccccchH
Confidence 7888874 222 3344555544332211 223322211 1111 01111111 111111111000 00001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeE
Q 000647 1027 ELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLD 1106 (1374)
Q Consensus 1027 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~ 1106 (1374)
.++.+ .....+....+..+.....++.....+++||.++.+.+++.+. ......+++.||. +|.|+|+||+
T Consensus 1171 ~~g~~----~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~--~~~~~~~~~~~p~---~g~I~f~nVs 1241 (1495)
T PLN03232 1171 TMGLL----LSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATA--IIENNRPVSGWPS---RGSIKFEDVH 1241 (1495)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc--cccCCCCCCCCCC---CCcEEEEEEE
Confidence 11111 1122222333444555555566667889999999865332211 0011123456776 6899999999
Q ss_pred EeCC-CcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCC
Q 000647 1107 IITP-SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYT 1183 (1374)
Q Consensus 1107 ~~yp-~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~L 1183 (1374)
|+|+ +.++||+|+||+|+||||||||||||||||||+++|+|+|+|++|+|.+||+||+++ +.+|++|++|||||+|
T Consensus 1242 f~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~L 1321 (1495)
T PLN03232 1242 LRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVL 1321 (1495)
T ss_pred EEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCee
Confidence 9885 457899999999999999999999999999999999999999999999999999998 5789999999999999
Q ss_pred CCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhh
Q 000647 1184 CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQ 1262 (1374)
Q Consensus 1184 f~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQ 1262 (1374)
|+|||||||++.. +.+|++++++++.++++++++++|+||||.+ +.|.+|||||||
T Consensus 1322 F~gTIr~NL~~~~-----------------------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1378 (1495)
T PLN03232 1322 FSGTVRFNIDPFS-----------------------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQ 1378 (1495)
T ss_pred eCccHHHHcCCCC-----------------------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHH
Confidence 9999999998532 2457889999999999999999999999997 478999999999
Q ss_pred hhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCce
Q 000647 1263 RLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGIT 1340 (1374)
Q Consensus 1263 rlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~T 1340 (1374)
|||| ||||+|+||||||||||||||.++|+.+++.+++ .++|
T Consensus 1379 rlaL------------------------------------ARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~T 1422 (1495)
T PLN03232 1379 LLSL------------------------------------ARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCT 1422 (1495)
T ss_pred HHHH------------------------------------HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 9999 9999999999999999999999999999998765 5899
Q ss_pred EEEecCCCCchhhccceEEEEcC
Q 000647 1341 FVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1341 vI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
+|+||||++++...|+++.|.+|
T Consensus 1423 vI~IAHRl~ti~~~DrIlVL~~G 1445 (1495)
T PLN03232 1423 MLVIAHRLNTIIDCDKILVLSSG 1445 (1495)
T ss_pred EEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-106 Score=1096.83 Aligned_cols=1110 Identities=16% Similarity=0.168 Sum_probs=665.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLI-SE-NILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIH 184 (1374)
Q Consensus 107 l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l-~~-~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l~ 184 (1374)
++..+++.++.+.++...|.+.+.+++.+.+.+.+.....+ +. .++..++.+++.....|...+++.+.|..+...+.
T Consensus 319 ~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy 398 (1522)
T TIGR00957 319 FLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVY 398 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567788888889999999999877654333221111 11 11111122233333455677788887777766665
Q ss_pred HHHhhccccccccccCC-CCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHH
Q 000647 185 TRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWI-LAYVLGAG 262 (1374)
Q Consensus 185 ~~yl~~~~~y~~~~~d~-~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~-l~~~~~~~ 262 (1374)
++-+ ..+....++ ..++..++++.|++++.+.. ..+..+...++.+++..+.+ +...+...++ ++.+++..
T Consensus 399 ~K~L----~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll--~~~~g~~~l~~l~~~~~~~ 471 (1522)
T TIGR00957 399 RKAL----VITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFL--WLNLGPSVLAGVAVMVLMV 471 (1522)
T ss_pred HHHH----hCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHH
Confidence 5544 444444433 34588899999999987744 33333333333333333323 2223322222 12222222
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 263 TMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLL 342 (1374)
Q Consensus 263 ~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1374)
.+..++++.+.+...+..+...+.-.....+.++++.||+|++|+...+++++..++..+..++.. +...+..+..
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~----~~~~~~~~~~ 547 (1522)
T TIGR00957 472 PLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSA----YLHAVGTFTW 547 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 223345555555544444444444456667777889999999999998877776665554333221 1111111111
Q ss_pred HHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000647 343 KYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRE 422 (1374)
Q Consensus 343 ~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~ 422 (1374)
+....+..++....|.. .....+++....+..+ .++..+..++..+......+.+...+.+|+.++++.+++
T Consensus 548 -~~~~~~~~~~~f~~~~~---~~~~~~l~~~~~f~~l----~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~ 619 (1522)
T TIGR00957 548 -VCTPFLVALITFAVYVT---VDENNILDAEKAFVSL----ALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEEL 619 (1522)
T ss_pred -HHHHHHHHHHHHHHHHH---hcCCCCcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 11111111111111110 0001122222222221 222234456777777888899999999999999875433
Q ss_pred ccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccE
Q 000647 423 LSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501 (1374)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~ 501 (1374)
... . ... . .....+.+.++++|++|.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 620 ~~~-~--~~~-~-~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~ 694 (1522)
T TIGR00957 620 EPD-S--IER-R-TIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 694 (1522)
T ss_pred ccc-c--ccc-c-ccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcE
Confidence 210 0 000 0 0000112369999999999753 67999999999999999999999999999999999999999999
Q ss_pred EEeCCCCccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCC
Q 000647 502 IAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDE 578 (1374)
Q Consensus 502 I~~~g~~~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~ 578 (1374)
|.++| +|+||||+|+++++|++|||.++.. .+++++.++++.|++.++++.+|.++++ +.|.+
T Consensus 695 i~~~g-------~i~yv~Q~~~l~~~Ti~eNI~~g~~-------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~ 760 (1522)
T TIGR00957 695 VHMKG-------SVAYVPQQAWIQNDSLRENILFGKA-------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVN 760 (1522)
T ss_pred EEECC-------EEEEEcCCccccCCcHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCC
Confidence 99986 6999999999999999999999853 2456778899999999999998876654 45789
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-----cCCEEEEEccChhhHhhccEEEEecCCCce
Q 000647 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA-----MGTSCITISHRPALVAFHDVVLSLDGEGEW 653 (1374)
Q Consensus 579 LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~-----~~~TiI~vtH~~~~~~~~d~il~l~~~g~~ 653 (1374)
||||||||++||||++++|+++|||||||+||+++++++++.+.+ .++|+|+|||+++.+..+|+|++|++ |..
T Consensus 761 LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~-G~i 839 (1522)
T TIGR00957 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSG-GKI 839 (1522)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecC-CeE
Confidence 999999999999999999999999999999999999999988742 47899999999999999999999985 332
Q ss_pred EEeccCCCcccccccc-cc-ccc--cccccc-h-hh-------hHHHHHh-hh----hc---ccC--cccCCCCCCcchh
Q 000647 654 RVHDKRDGSSVVTKSG-IN-MIK--SSETDR-Q-SD-------AMAVEQA-FV----TA---KKD--SAFSNPKAQSYVS 710 (1374)
Q Consensus 654 ~~~~~~~~~~~~~~~~-~~-~~~--~~~~~~-~-~~-------~~~~~~~-~~----~~---~~~--~~~~~~~~~~~~~ 710 (1374)
.+. ++.+......+ +. ... ..+++. . .+ ....... .+ .. ..+ .............
T Consensus 840 -~~~-g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 917 (1522)
T TIGR00957 840 -SEM-GSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQ 917 (1522)
T ss_pred -Eee-CCHHHHHhcchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhccccccccccc
Confidence 221 11111111000 00 000 000000 0 00 0000000 00 00 000 0000000000000
Q ss_pred hhhh-cCCCCCCCCC----CCcCCCCcCCCCcchHHHH-hhHhhhccccccc--hhhHHHHHHHHHHHHHHHHHHHHhhh
Q 000647 711 EVIA-ASPIADHNVP----LPVFPQLKSAPRILPLRVA-DMFKVLVPTVFDK--QGAQLLAVAFLVVSRTWISDRIASLN 782 (1374)
Q Consensus 711 ~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~ 782 (1374)
.... ..+..+.... ........+..+...+... .+++.. ...... ....+.......+..+|++.|.....
T Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~ 996 (1522)
T TIGR00957 918 SRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAI-GLFITFLSIFLFVCNHVSALASNYWLSLWTDDPM 996 (1522)
T ss_pred cccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 0000 0000000000 0000000011111111111 111110 000000 00001111222345567776654211
Q ss_pred chHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCc
Q 000647 783 GTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDAD 861 (1374)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~ 861 (1374)
. ..+......+++++++.+++..++.....++..+.+.++..++|+++++++++.+ .||+..+. .++.
T Consensus 997 ~-------~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~----G~il 1065 (1522)
T TIGR00957 997 V-------NGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPS----GNLV 1065 (1522)
T ss_pred c-------cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCCh----HHHH
Confidence 0 0000001112333433334444444444555667778888999999999999975 78875432 3578
Q ss_pred cchHHHHHHHHHHHHHHHHHhhHh-------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHH
Q 000647 862 QRITHDLEKLTTDLSGLVTGMVKP-------SVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQ 934 (1374)
Q Consensus 862 ~ri~~D~~~l~~~l~~~~~~~~~~-------~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1374)
+|+++|++.++..++..+..++.. ++.+++..|.+..+. +++++++.++...+.+. ..+.+
T Consensus 1066 nR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--------~r~~~ 1133 (1522)
T TIGR00957 1066 NRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVII----PPLGLLYFFVQRFYVAS--------SRQLK 1133 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH--------HHHHH
Confidence 999999999987766544333322 122223333322221 11122222222222221 12222
Q ss_pred hhhh-----hhhHHHHHHHHhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHhhhhhHHH
Q 000647 935 QLEG-----TFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLL-----LKKKWLFGILDDFVTKQLPHNVT 1004 (1374)
Q Consensus 935 ~le~-----~~r~~~~~l~~~aesIa~~~g~~~e~~~~~~~~~~ll~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1374)
+++. .+....|.+. ..++|+.|+. |+. +.+++.+.++..... ...+|+...++ ++... +.
T Consensus 1134 ~~~~~~~s~l~~~~~E~l~-Gi~tIraf~~---~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~ 1203 (1522)
T TIGR00957 1134 RLESVSRSPVYSHFNETLL-GVSVIRAFEE---QER-FIHQSDLKVDENQKAYYPSIVANRWLAVRLE-CVGNC----IV 1203 (1522)
T ss_pred HHHHHHhhHHHHHHHHHhC-CcHHHHHhhh---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HH
Confidence 2221 1222333332 4567777873 333 345556665543322 23344433222 21110 11
Q ss_pred HHHHHHHHhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 000647 1005 WGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEIS 1084 (1374)
Q Consensus 1005 ~~l~l~~~~~~~~~~~~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~ 1084 (1374)
..+ ..+.....+. .+.|.++.++.+. .+....+..+......+.....+++|+.++.+.+++.+. ..+.
T Consensus 1204 ~~~-~~~~v~~~~~----~~~g~l~~~l~~~----~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~--~~~~ 1272 (1522)
T TIGR00957 1204 LFA-ALFAVISRHS----LSAGLVGLSVSYS----LQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPW--QIQE 1272 (1522)
T ss_pred HHH-HHHHHHhcCC----CCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc--cccC
Confidence 111 1111111111 1234443333222 233345556666667777778899999999855332110 0111
Q ss_pred CCCCCCCCCCCCCCCEEEeeeEEeCCC-cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCc
Q 000647 1085 GSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQH 1163 (1374)
Q Consensus 1085 ~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~d 1163 (1374)
..++..||. +|.|+|+||+|+||+ .++||+|+||+|+||||||||||||||||||+++|+|+|||.+|+|.+||+|
T Consensus 1273 ~~~~~~wp~---~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1273 TAPPSGWPP---RGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN 1349 (1522)
T ss_pred CCCCCCCCC---CCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEE
Confidence 234557886 799999999999876 4689999999999999999999999999999999999999999999999999
Q ss_pred cccc--cCCcccEEEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhh
Q 000647 1164 IDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLER 1241 (1374)
Q Consensus 1164 I~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~ 1241 (1374)
|+++ +.+|++|++|||||+||+||||+||+ |.+ +.+|++++++++.+++++++++
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLd-p~~----------------------~~sdeei~~al~~a~l~~~I~~ 1406 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSGSLRMNLD-PFS----------------------QYSDEEVWWALELAHLKTFVSA 1406 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCccHHHHcC-ccc----------------------CCCHHHHHHHHHHcCcHHHHhh
Confidence 9998 58899999999999999999999997 432 2467889999999999999999
Q ss_pred hccCCcccc-ccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCC
Q 000647 1242 EEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTN 1320 (1374)
Q Consensus 1242 ~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTS 1320 (1374)
+|+||||.+ +.|.+||||||||||| ||||+|+|||||||||||
T Consensus 1407 lp~GLdt~v~e~G~~LSgGQrQrl~L------------------------------------ARALLr~~~ILiLDEaTS 1450 (1522)
T TIGR00957 1407 LPDKLDHECAEGGENLSVGQRQLVCL------------------------------------ARALLRKTKILVLDEATA 1450 (1522)
T ss_pred CccCCCceecCCCCcCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEECCcc
Confidence 999999998 4689999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 000647 1321 ATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1321 aLD~~~e~~l~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~l~~g~ 1364 (1374)
|||.++|+.+++.+++ .++|+|+||||++++...|+++.|.+|+
T Consensus 1451 alD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~ 1496 (1522)
T TIGR00957 1451 AVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGE 1496 (1522)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 9999999999998764 5999999999999999999999996553
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-101 Score=1045.34 Aligned_cols=1121 Identities=16% Similarity=0.161 Sum_probs=638.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENI---LLCFLLSTMHSTSKYITGTLSLQFRKIVTKLI 183 (1374)
Q Consensus 107 l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~---~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l 183 (1374)
+++.+++.++...+.+..|.+.+.+++.+...+.. ....++..+ +..++.+++.....|+..+++.++|..+...+
T Consensus 246 ~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~-~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~i 324 (1560)
T PTZ00243 246 VWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNAT-WGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALI 324 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888899999999999999987554432 111111111 11122233444566888899999999888888
Q ss_pred HHHHhhcccccccccc---CCCCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 000647 184 HTRYFENMAYYKISHV---DGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLG 260 (1374)
Q Consensus 184 ~~~yl~~~~~y~~~~~---d~~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~ 260 (1374)
.++.+.-. .... +...++....++.|++++.+....+ ..+...++..++..+.|+...++.. ++.++.+++
T Consensus 325 f~K~l~ls----~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~-~~l~~~Pl~li~~~~lL~~~lG~~a-l~gv~vl~v 398 (1560)
T PTZ00243 325 FEKCFTIS----SKSLAQPDMNTGRIINMMSTDVERINSFMQYC-MYLWSSPMVLLLSILLLSRLVGWCA-LMAVAVLLV 398 (1560)
T ss_pred HHHHHhCC----hhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHH
Confidence 87766421 1111 1234567789999999988776443 2333333333333333332223211 111111122
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 261 AGTMMRNFSPAFGKLMSKEQQLEGEYR-QLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQD 339 (1374)
Q Consensus 261 ~~~i~~~~~~~l~~l~~~~q~~e~~~r-~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~ 339 (1374)
...+..++++...+...+..+. .|-| .....+..+++.||+|++|+...+++++.-++..+..++...... +..
T Consensus 399 ~~pl~~~~~k~~~~~~~~~~~~-~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~----~~~ 473 (1560)
T PTZ00243 399 TLPLNGAIMKHQMAARRKIAKA-ADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARV----ATS 473 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 2222333444444333222222 2222 355666678888999999999998877766555554433222211 111
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000647 340 FLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVI 419 (1374)
Q Consensus 340 ~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~ 419 (1374)
++.......+.. +.+..|. +..+..+.+. ++..+ .++..+..++..+......+.+...+.+||.++++.
T Consensus 474 ~~~~~~p~l~~~-~~f~~y~---~~g~~Lt~~~--vft~l----aL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~ 543 (1560)
T PTZ00243 474 FVNNATPTLMIA-VVFTVYY---LLGHELTPEV--VFPTI----ALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLEC 543 (1560)
T ss_pred HHHHHHHHHHHH-HHHHHHH---HhCCCCCHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 111111111111 1111111 0111223332 22221 222233345556666677778888889999998865
Q ss_pred cccc-----cccC-------CCC--C-----CC---------C-C-----------------------CCccCCCCcEEE
Q 000647 420 SREL-----SIED-------KSP--Q-----RN---------G-S-----------------------RNYFSEANYIEF 447 (1374)
Q Consensus 420 ~~~~-----~~~~-------~~~--~-----~~---------~-~-----------------------~~~~~~~~~i~~ 447 (1374)
++.. +..+ ... . .+ . + .......+.+.+
T Consensus 544 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1560)
T PTZ00243 544 DNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVV 623 (1560)
T ss_pred ccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccc
Confidence 4310 0000 000 0 00 0 0 000001124556
Q ss_pred eeeEEEcC---------------------------------------CCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHH
Q 000647 448 SGVKVVTP---------------------------------------TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLF 488 (1374)
Q Consensus 448 ~~v~~~~~---------------------------------------~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl 488 (1374)
+|+++.+| +++++|+|+||+|++|++++|+||||||||||+
T Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL 703 (1560)
T PTZ00243 624 EDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLL 703 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHH
Confidence 66655421 235689999999999999999999999999999
Q ss_pred HHHCCCCcCCccEEEeCCCCccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCC
Q 000647 489 RVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568 (1374)
Q Consensus 489 ~~l~Gl~~~~~G~I~~~g~~~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 568 (1374)
++|+|+++|++|+|.++ ++|+|+||+|+++++|++|||.++.. .+.+++.++++.+++++.++.+|
T Consensus 704 ~~i~G~~~~~~G~i~~~-------~~i~yv~Q~~~l~~~Tv~enI~~~~~-------~~~~~~~~~~~~~~l~~~l~~l~ 769 (1560)
T PTZ00243 704 QSLLSQFEISEGRVWAE-------RSIAYVPQQAWIMNATVRGNILFFDE-------EDAARLADAVRVSQLEADLAQLG 769 (1560)
T ss_pred HHHhcCCCCCCcEEEEC-------CeEEEEeCCCccCCCcHHHHHHcCCh-------hhHHHHHHHHHHhhhHHHHHHhh
Confidence 99999999999999874 47999999999999999999998642 23456778899999999999987
Q ss_pred CCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH---hcCCEEEEEccChhhHhhcc
Q 000647 569 PEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVAFHD 642 (1374)
Q Consensus 569 ~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~---~~~~TiI~vtH~~~~~~~~d 642 (1374)
.+..+ +.+.+||||||||++||||++++|+++|||||||+||+++.+++++.+. ..|+|+|+|||+++.+..+|
T Consensus 770 ~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad 849 (1560)
T PTZ00243 770 GGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRAD 849 (1560)
T ss_pred ccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCC
Confidence 66544 3478999999999999999999999999999999999999988877432 24899999999999999999
Q ss_pred EEEEecCCCceEEeccCCCccccccccccccccc-cccchhhhHHHHHhhhhcccCccc-CCCCCCcchhhhh-hcCC-C
Q 000647 643 VVLSLDGEGEWRVHDKRDGSSVVTKSGINMIKSS-ETDRQSDAMAVEQAFVTAKKDSAF-SNPKAQSYVSEVI-AASP-I 718 (1374)
Q Consensus 643 ~il~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~-~ 718 (1374)
+|++|++ |.. ... ++................ ........................ ............. .... .
T Consensus 850 ~ii~l~~-G~i-~~~-G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1560)
T PTZ00243 850 YVVALGD-GRV-EFS-GSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGA 926 (1560)
T ss_pred EEEEEEC-CEE-EEe-cCHHHHHhChHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999985 332 221 111111111000000000 000000000000000000000000 0000000000000 0000 0
Q ss_pred CCCCCCCCcCCCCcCCCCcchHHHH-hhHhhhcccccc--chhhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHhcCHH
Q 000647 719 ADHNVPLPVFPQLKSAPRILPLRVA-DMFKVLVPTVFD--KQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKA 795 (1374)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1374)
..............+..+..++... .+++..-...+. .....++...+..+..+|++.|...... .+..
T Consensus 927 ~~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~--------~~~~ 998 (1560)
T PTZ00243 927 ALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFK--------LSAA 998 (1560)
T ss_pred ccccccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--------CCcc
Confidence 0000000000000111122222211 111110000000 0000011111223445666666432110 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHH
Q 000647 796 SFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTD 874 (1374)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~ 874 (1374)
. +++++++..++..+......+...........++|..+++++++.+ .||+..+. .++.+|++.|++.++..
T Consensus 999 ~---~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~----G~ilnR~s~Di~~id~~ 1071 (1560)
T PTZ00243 999 T---YLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPL----GRILNRFSRDIDILDNT 1071 (1560)
T ss_pred c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCc----cHHHHHHHhhHHHHHHH
Confidence 1 1222222222222222111122223333445688899999999875 78875433 35789999999999877
Q ss_pred HHHHHHHhhHh-------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhh-----hhhH
Q 000647 875 LSGLVTGMVKP-------SVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEG-----TFRF 942 (1374)
Q Consensus 875 l~~~~~~~~~~-------~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~-----~~r~ 942 (1374)
++..+..++.. ++.+++..|.+..+. +++++++..+...+.+ ...+.++++. .+..
T Consensus 1072 l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~----i~~~~~~~~i~~~~~~--------~~r~~~r~~~~~~s~l~s~ 1139 (1560)
T PTZ00243 1072 LPMSYLYLLQCLFSICSSILVTSASQPFVLVAL----VPCGYLYYRLMQFYNS--------ANREIRRIKSVAKSPVFTL 1139 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhcHHHHH
Confidence 65433333222 222222333211110 1111111111111111 1222222211 1222
Q ss_pred HHHHHHHhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhhhcccchh
Q 000647 943 MHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLL-LLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRAL 1021 (1374)
Q Consensus 943 ~~~~l~~~aesIa~~~g~~~e~~~~~~~~~~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 1021 (1374)
..|.+ ...++|..|+.+..+.+.+.+..+...+.... ....+|+ ++...++...+. +..++..+++. ..+...
T Consensus 1140 ~~E~l-~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~-~~~~~~l~~~~~--~~~~~~~~~~~-~~~~~~- 1213 (1560)
T PTZ00243 1140 LEEAL-QGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWL-GVRVEFLSNIVV--TVIALIGVIGT-MLRATS- 1213 (1560)
T ss_pred HHHHH-cCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHH-HhccCC-
Confidence 22333 24577888885443333333333333222222 2233443 332222211110 01111111111 001000
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-C-------------------
Q 000647 1022 VSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGD-D------------------- 1081 (1374)
Q Consensus 1022 ~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~-~------------------- 1081 (1374)
.+.+.++.++ ....+....+..+......+.....+++||.++.+..+..+.+. .
T Consensus 1214 -~~~g~l~~~l----~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 1288 (1560)
T PTZ00243 1214 -QEIGLVSLSL----TMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGT 1288 (1560)
T ss_pred -CCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccc
Confidence 0122222222 22233344555566666677777889999999986432211000 0
Q ss_pred --CccCCCCCCCCCCCCCCCEEEeeeEEeCCCc-ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEe
Q 000647 1082 --EISGSSQHKWNSTDYQDSISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158 (1374)
Q Consensus 1082 --~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~-~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~ 1158 (1374)
.+...++..||.+..+|.|+|+||+|+|+++ ++||+|+||+|+||||||||||||||||||+++|+|+|+|++|+|.
T Consensus 1289 ~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~ 1368 (1560)
T PTZ00243 1289 VVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIR 1368 (1560)
T ss_pred cccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 0001122234433346899999999988764 6799999999999999999999999999999999999999999999
Q ss_pred cCCCccccc--cCCcccEEEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCc
Q 000647 1159 KPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 1236 (1374)
Q Consensus 1159 idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~ 1236 (1374)
+||+||+++ +.+|++|++|||||+||+||||+||+ |.. +.+|++++++++.++++
T Consensus 1369 IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNId-p~~----------------------~~sdeeI~~Al~~a~l~ 1425 (1560)
T PTZ00243 1369 VNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVD-PFL----------------------EASSAEVWAALELVGLR 1425 (1560)
T ss_pred ECCEEcccCCHHHHHhcceEECCCCccccccHHHHhC-ccc----------------------CCCHHHHHHHHHHCCCh
Confidence 999999998 57899999999999999999999997 432 24578899999999999
Q ss_pred hhhhhhccCCcccc-ccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCccccccccccc-CcEEE
Q 000647 1237 YLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHK-PKFGI 1314 (1374)
Q Consensus 1237 ~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~-Pkill 1314 (1374)
++++++|+||||.+ +.|.+||||||||||| ||||+++ |||||
T Consensus 1426 ~~I~~lp~Gldt~vge~G~nLSgGQrQrLaL------------------------------------ARALL~~~~~ILl 1469 (1560)
T PTZ00243 1426 ERVASESEGIDSRVLEGGSNYSVGQRQLMCM------------------------------------ARALLKKGSGFIL 1469 (1560)
T ss_pred HHHhhCcccccccccCCcCcCCHHHHHHHHH------------------------------------HHHHhcCCCCEEE
Confidence 99999999999998 4789999999999999 9999996 89999
Q ss_pred eeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcC
Q 000647 1315 LDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1315 LDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
|||||||||.++|+.+++.++. .++|+|+||||++++...|+++.|.+|
T Consensus 1470 LDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G 1520 (1560)
T PTZ00243 1470 MDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHG 1520 (1560)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECC
Confidence 9999999999999999987764 589999999999999999999999654
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-100 Score=1042.03 Aligned_cols=1102 Identities=17% Similarity=0.177 Sum_probs=642.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 109 ALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPL-FFQ--LISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHT 185 (1374)
Q Consensus 109 ~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~-f~~--~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l~~ 185 (1374)
...++.++.+.+....|.+.+.+.+.+...+.+. ... +++..++..++.+++.....|...+++.++|..+...+.+
T Consensus 84 ~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~ 163 (1490)
T TIGR01271 84 FYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYK 163 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456777888888999998888774322221 111 1111111112222334456677788888888888777666
Q ss_pred HHhhccccccccccCC-CCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 000647 186 RYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTM 264 (1374)
Q Consensus 186 ~yl~~~~~y~~~~~d~-~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~i 264 (1374)
+.++ .+...+++ ..+...++++.|++++.+....+ ..+...++.++++.+.++...++.. ++.++.+++...+
T Consensus 164 K~L~----l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~-l~~l~v~~~~~~~ 237 (1490)
T TIGR01271 164 KTLK----LSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNG-FCGLGFLILLALF 237 (1490)
T ss_pred HHHh----CCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 5553 33333332 34678899999999998865543 2232333333333343332222221 1222222233333
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 265 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKY 344 (1374)
Q Consensus 265 ~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1374)
..++++.+.+...+..+.....-.....+.++++.||+|++|+.+.+++++..++..+..++..... .....+. +
T Consensus 238 ~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~----~~~~~~~-~ 312 (1490)
T TIGR01271 238 QACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLR----YFYSSAF-F 312 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-H
Confidence 4455555555544333333333345666777888999999999998777666655544443322211 1111111 1
Q ss_pred HHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 000647 345 LGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSL-GTLSISSRRLNRLSGYADRIHELMVISREL 423 (1374)
Q Consensus 345 ~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~ 423 (1374)
....+..++.+..|.. ....+.+. +++.+. ++..+..++ ..+......+.+...+.+||.++++.++..
T Consensus 313 ~~~~~~~~~~f~~y~~----~~~~~~~~--~ft~la----l~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~ 382 (1490)
T TIGR01271 313 FSGFFVVFLSVVPYAL----IKGIILRR--IFTTIS----YCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYK 382 (1490)
T ss_pred HHHHHHHHHHHHHHHH----hCCCcHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 1111111111111110 01112322 222221 111111222 234555667778889999999998654321
Q ss_pred cccCCCCCCCCCCCccCCCCcEEEeeeEEEcCC---------------------------------CCeeeeeeeEEEeC
Q 000647 424 SIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT---------------------------------GNVLVENLTLKVEP 470 (1374)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~---------------------------------~~~~l~~isl~i~~ 470 (1374)
.... . .....++++|++|.|+. .+++|+|+||+|++
T Consensus 383 ~~~~-----~------~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~ 451 (1490)
T TIGR01271 383 TLEY-----N------LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEK 451 (1490)
T ss_pred cccc-----c------CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECC
Confidence 1000 0 01123666666666532 14689999999999
Q ss_pred CCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHH
Q 000647 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGG 550 (1374)
Q Consensus 471 Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~ 550 (1374)
|++++|+||||||||||+++|+|+++|++|+|.++| +|+||||+||++++|++|||.|+... ++++
T Consensus 452 G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------~iayv~Q~~~l~~~Ti~eNI~~g~~~-------~~~~ 517 (1490)
T TIGR01271 452 GQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------RISFSPQTSWIMPGTIKDNIIFGLSY-------DEYR 517 (1490)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------EEEEEeCCCccCCccHHHHHHhcccc-------chHH
Confidence 999999999999999999999999999999999987 69999999999999999999998532 3356
Q ss_pred HHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH-Hh--c
Q 000647 551 MVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-RA--M 624 (1374)
Q Consensus 551 ~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l-~~--~ 624 (1374)
+.++++.|+|.+.++.+|.++.+ +.|.+|||||||||+||||++++|+++||||||||||+++++++++.+ .+ .
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~ 597 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMS 597 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc
Confidence 77889999999999998877654 346799999999999999999999999999999999999999999853 33 4
Q ss_pred CCEEEEEccChhhHhhccEEEEecCCCceEEeccCCCcccccc-----------ccccc------------------cc-
Q 000647 625 GTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTK-----------SGINM------------------IK- 674 (1374)
Q Consensus 625 ~~TiI~vtH~~~~~~~~d~il~l~~~g~~~~~~~~~~~~~~~~-----------~~~~~------------------~~- 674 (1374)
++|+|+|||+++.+..+|+|+++++ |... .... ....... ..... ..
T Consensus 598 ~~tvilvtH~~~~~~~ad~ii~l~~-g~i~-~~g~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1490)
T TIGR01271 598 NKTRILVTSKLEHLKKADKILLLHE-GVCY-FYGT-FSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDG 674 (1490)
T ss_pred CCeEEEEeCChHHHHhCCEEEEEEC-CEEE-EEcC-HHHHHhcChHHHHHHhcccccccccccccccccccccccccccc
Confidence 8999999999999999999999985 3322 1110 0000000 00000 00
Q ss_pred -c-----ccc-cc---h-hhh--H------------------------------HHHHhh-hhcc------cC---cccC
Q 000647 675 -S-----SET-DR---Q-SDA--M------------------------------AVEQAF-VTAK------KD---SAFS 701 (1374)
Q Consensus 675 -~-----~~~-~~---~-~~~--~------------------------------~~~~~~-~~~~------~~---~~~~ 701 (1374)
. .+. .. . .+. . ...... .... .+ ...+
T Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1490)
T TIGR01271 675 DSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEES 754 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccccccccccccccc
Confidence 0 000 00 0 000 0 000000 0000 00 0000
Q ss_pred CCCC----------------------C--------cc----hhh--hhhc----CCCCC----C-CCC-----CCc----
Q 000647 702 NPKA----------------------Q--------SY----VSE--VIAA----SPIAD----H-NVP-----LPV---- 727 (1374)
Q Consensus 702 ~~~~----------------------~--------~~----~~~--~~~~----~~~~~----~-~~~-----~~~---- 727 (1374)
.+.. . +. ..+ .... ....+ . ..+ ...
T Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1490)
T TIGR01271 755 LPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEE 834 (1490)
T ss_pred cccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 0000 0 00 000 0000 00000 0 000 000
Q ss_pred ------CCCCcCCCCcchHHHHhhHhhhccccccc------hhhHHHHHHHHHHHHHHHHHHHHhhh----chHHHH---
Q 000647 728 ------FPQLKSAPRILPLRVADMFKVLVPTVFDK------QGAQLLAVAFLVVSRTWISDRIASLN----GTTVKY--- 788 (1374)
Q Consensus 728 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~--- 788 (1374)
.....+..+...+.+. ..++...... ....++......+..+|++.|..... ......
T Consensus 835 ~~~~~~~~~e~~~~g~v~~~vY---~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~ 911 (1490)
T TIGR01271 835 DLKECFADERENVFETTTWNTY---LRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSP 911 (1490)
T ss_pred hhhhhhhHHHHhhcCcccHHHH---HHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCc
Confidence 0000111112222211 1111111000 00011112223355677766643110 000000
Q ss_pred -----HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCcc
Q 000647 789 -----VLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQ 862 (1374)
Q Consensus 789 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ 862 (1374)
....+...++ .+.+++..+.+..++.....++..+.+.+...++|.++++++++.+ .||+..+. .++.+
T Consensus 912 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~----G~iln 986 (1490)
T TIGR01271 912 DVQKPVIITPTSAYY-IFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKA----GRILN 986 (1490)
T ss_pred cccccccccCcchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCh----hHHHH
Confidence 0000011111 1222222222222333334445566677788889999999999976 78875443 34789
Q ss_pred chHHHHHHHHHHHHHHHHHhhHhH-------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHh
Q 000647 863 RITHDLEKLTTDLSGLVTGMVKPS-------VDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQ 935 (1374)
Q Consensus 863 ri~~D~~~l~~~l~~~~~~~~~~~-------~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1374)
|+++|++.++..++..+..++..+ +.+.+..|.+.++. ++++++++++...+.+. ..+..+
T Consensus 987 Rfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~----~~l~~~~~~~~~~~~~~--------~r~l~~ 1054 (1490)
T TIGR01271 987 RFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAA----IPVAVIFIMLRAYFLRT--------SQQLKQ 1054 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 999999999887765444333222 22223333322111 11111222222122221 122222
Q ss_pred hhh-----hhhHHHHHHHHhHHHhhhcCCcHHHHHHHHHHHHHHHHHH----H-HHHHHHHHhhhHHHHHHhhhhhHHHH
Q 000647 936 LEG-----TFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHS----L-LLLKKKWLFGILDDFVTKQLPHNVTW 1005 (1374)
Q Consensus 936 le~-----~~r~~~~~l~~~aesIa~~~g~~~e~~~~~~~~~~ll~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1374)
++. .+....+.+. ..++|+.|+...... ++|.+.++.. . .....+|+...++. +... +..
T Consensus 1055 ~~~~~~s~l~~~~~Etl~-Gl~tIraf~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~-i~~~----~~~ 1124 (1490)
T TIGR01271 1055 LESEARSPIFSHLITSLK-GLWTIRAFGRQSYFE----TLFHKALNLHTANWFLYLSTLRWFQMRIDI-IFVF----FFI 1124 (1490)
T ss_pred HHHHHhhHHHHHHHHHhc-CHHHHHHhCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHH
Confidence 222 2223333332 457788888554433 4444444422 1 22334454433332 1110 011
Q ss_pred HHHH-HHHhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--
Q 000647 1006 GLSL-LYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDE-- 1082 (1374)
Q Consensus 1006 ~l~l-~~~~~~~~~~~~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~-- 1082 (1374)
++.+ .++.... ..+.++.++.++ .+....+..+......+.....+++||.++.+.+++.+.....
T Consensus 1125 ~~~~l~~~~~~~-------~~g~~g~~l~~~----~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~ 1193 (1490)
T TIGR01271 1125 AVTFIAIGTNQD-------GEGEVGIILTLA----MNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGG 1193 (1490)
T ss_pred HHHHHHHHHhcC-------CccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccc
Confidence 1111 1111100 112222222211 1122233344444555666678899999998654332111000
Q ss_pred ----------ccCCCCCCCCCCCCCCCEEEeeeEEeCCC-cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCC
Q 000647 1083 ----------ISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1083 ----------~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~ 1151 (1374)
....+++.||. .|.|+|+||+|.|+. .++||+|+||+|+||||||||||||||||||+++|+|+|+
T Consensus 1194 ~~~~~~~~~~~~~~~~~~wp~---~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~ 1270 (1490)
T TIGR01271 1194 KYQLSTVLVIENPHAQKCWPS---GGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS 1270 (1490)
T ss_pred ccccccccccccCCCCCCCCC---CCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 01123456886 689999999998875 6899999999999999999999999999999999999998
Q ss_pred CCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHH
Q 000647 1152 VVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTI 1229 (1374)
Q Consensus 1152 ~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 1229 (1374)
.+|+|.+||+||+++ +.+|++|++|||||+||+||||+||+ |.. +..|++++++
T Consensus 1271 -~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLd-p~~----------------------~~tdeei~~a 1326 (1490)
T TIGR01271 1271 -TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLD-PYE----------------------QWSDEEIWKV 1326 (1490)
T ss_pred -CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhC-ccc----------------------CCCHHHHHHH
Confidence 799999999999988 57899999999999999999999996 432 2468889999
Q ss_pred HHhCCCchhhhhhccCCccccc-cccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccc
Q 000647 1230 LEGVRLSYLLEREEVGWDANLN-WEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFH 1308 (1374)
Q Consensus 1230 L~~v~L~~~v~~~~~Gldt~~~-~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr 1308 (1374)
|+.++|+++++.+|+||||.++ .|.+||||||||||| ||||+|
T Consensus 1327 L~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~L------------------------------------ARALLr 1370 (1490)
T TIGR01271 1327 AEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCL------------------------------------ARSILS 1370 (1490)
T ss_pred HHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHH------------------------------------HHHHhC
Confidence 9999999999999999999984 688999999999999 999999
Q ss_pred cCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcC
Q 000647 1309 KPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1309 ~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
+|||||||||||+||.++++.+++.+++ .+||+|+||||++++...|+++.|.+|
T Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G 1427 (1490)
T TIGR01271 1371 KAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGS 1427 (1490)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 9999999999999999999999998764 589999999999999999999999654
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-91 Score=810.67 Aligned_cols=629 Identities=38% Similarity=0.617 Sum_probs=546.9
Q ss_pred HHhhhhhhhcccchhhhhhccccCCCCcccccCCCCCCCccCcc-ccccccccccccccccchHHHHHHHHHHhccccch
Q 000647 24 ILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGDSERKPDK-AVANRSNIKKANQKKGGLKSLQVLAAILLSEMGKM 102 (1374)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~Ll~i~~p~~~~~ 102 (1374)
+++++++..+|++++|+..+..+..++++. ++.....++..+ ....+..++|.+..+..++++++++++++|++.++
T Consensus 2 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~t~~~~~~~~~~~~~k~~~~~~f~~k~~~ilkil~p~~~~~ 79 (659)
T KOG0060|consen 2 LAITAKVCAPGLVLRHASFLLAKLYIGSFR--GNPRFRSETCMSLAGKKQGAKAKASLDKVFFQKFLQILKILFPSTFSS 79 (659)
T ss_pred CcccccccCchhHHHHHHHHHHHhhhhhcc--CCCcccccchhhccCCCCCccchhhhhHHHHHHHHHHHHHhccCcccc
Confidence 467889999999999999999999999996 443333333332 22223223445556667899999999999998876
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 103 GARDLL-ALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTK 181 (1374)
Q Consensus 103 ~~~~l~-~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~ 181 (1374)
++.+++ +++++++..+..++.++.+.+.||.+++++|.+.|.+++..+++.+...+.+++..+|..+.|.++||+++|+
T Consensus 80 ~~~~l~l~~~~l~~~~~~~~y~~~~~~~~~y~al~~kd~~~F~~~~~~~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk 159 (659)
T KOG0060|consen 80 QTALLLLALVALTLLTTADVYMIGNIPTKFYVALINKDAELFKRLLFKYVLLIPGISLLNALLKFTTNELYLRFRKNLTK 159 (659)
T ss_pred HHHHHHHHHHHHHHHHHhHhheecccchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence 665544 4666677788889999999999999999999999999999998888888899999999999999999999999
Q ss_pred HHHHHHhhccccccccccCCCCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 000647 182 LIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGA 261 (1374)
Q Consensus 182 ~l~~~yl~~~~~y~~~~~d~~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~ 261 (1374)
++|+.||++.+||+++..|.++||||||+|+|+++||..+++++++++++++++++|+|+++...+|..+++++.|++++
T Consensus 160 ~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~ 239 (659)
T KOG0060|consen 160 YLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIG 239 (659)
T ss_pred HHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999988
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 262 GTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFL 341 (1374)
Q Consensus 262 ~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1374)
+++.+.+.+|+++++.+||++|||||+.|+|+|.|+|+||||+|++.|..+.+++|++++++.++.+...++++++++++
T Consensus 240 ~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~ 319 (659)
T KOG0060|consen 240 TVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIF 319 (659)
T ss_pred HHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000647 342 LKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISR 421 (1374)
Q Consensus 342 ~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~ 421 (1374)
- |++.++++++++.|+|.|....+.. .+.+...+.....+++.++++++.++....++.++.++++||.|+++...
T Consensus 320 ~-Ylg~ilsy~vi~~p~Fs~h~y~~~s---~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~ 395 (659)
T KOG0060|consen 320 D-YLGGILSYVVIAIPFFSGHVYDDLS---PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLD 395 (659)
T ss_pred H-HHHhhheeeEEeeeeecccccCCcC---HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Confidence 6 9999999999999999987543333 23455555566778888899999999999999999999999999987665
Q ss_pred cccccCC-----------C----CCCCCCCCccCCCCcEEEeeeEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCchh
Q 000647 422 ELSIEDK-----------S----PQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKS 485 (1374)
Q Consensus 422 ~~~~~~~-----------~----~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~isl~i~~Ge~~~IvG~sGsGKS 485 (1374)
+...... . ....+.+...+.++.|++++|++..|+ +..+++|+||+|+.|+.++|+||||||||
T Consensus 396 d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKt 475 (659)
T KOG0060|consen 396 DLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKT 475 (659)
T ss_pred HhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchh
Confidence 4432110 0 001111222344678999999999998 67788999999999999999999999999
Q ss_pred HHHHHHCCCCcCCccEEEeCCCCccccccEEEEecCCCCCcCCHHHHhcCCCCCCc-ccCCCCHHHHHHHHHHcCChhHH
Q 000647 486 SLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLL 564 (1374)
Q Consensus 486 TLl~~l~Gl~~~~~G~I~~~g~~~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~ 564 (1374)
+|+|+++|+||..+|++..+.... .+.+.||||+||+..||+||++.||....+ +.+..+|+++.+.|+.++|.+++
T Consensus 476 SLlRvlggLWp~~~G~l~k~~~~~--~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~ 553 (659)
T KOG0060|consen 476 SLLRVLGGLWPSTGGKLTKPTDGG--PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLL 553 (659)
T ss_pred HHHHHHhcccccCCCeEEecccCC--CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHH
Confidence 999999999999999999875421 256999999999999999999999965433 23457889999999999999999
Q ss_pred hcCC-CC--ccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEccChhhHhhc
Q 000647 565 DRYP-PE--KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFH 641 (1374)
Q Consensus 565 ~~~~-~~--~~~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~~~~TiI~vtH~~~~~~~~ 641 (1374)
++.. .+ .+.+|.+.||+|||||+|+||.+|++|++.||||+|||+|.+.|..+++.+++.|+|.|.|+||.++.++|
T Consensus 554 ~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfH 633 (659)
T KOG0060|consen 554 EREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFH 633 (659)
T ss_pred HHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhh
Confidence 9974 34 34489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCceEEeccCC
Q 000647 642 DVVLSLDGEGEWRVHDKRD 660 (1374)
Q Consensus 642 d~il~l~~~g~~~~~~~~~ 660 (1374)
|.++.|+++|+|.+++..+
T Consensus 634 d~~L~~~g~g~w~~~~I~~ 652 (659)
T KOG0060|consen 634 DYVLRMDGRGSWRFHQIDD 652 (659)
T ss_pred hEEEEecCCCceEEEEech
Confidence 9999999999999987654
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-78 Score=723.31 Aligned_cols=547 Identities=28% Similarity=0.479 Sum_probs=467.0
Q ss_pred chHHHHHHHHHHhccccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 000647 84 GLKSLQVLAAILLSEMGKMGA-RDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHS 162 (1374)
Q Consensus 84 ~~~~l~~Ll~i~~p~~~~~~~-~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~ 162 (1374)
-+++++.+.+-..-+.++++. .++++++++.++.+..+++++.|++.||++|..+|...|++.+..|.+++.+...+++
T Consensus 25 ~~~qfw~i~r~yw~~~~~~~~~~l~~~i~~~~l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v 104 (604)
T COG4178 25 LGRQFWMIARAYWASPVRKRAWLLLIGILALILLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNV 104 (604)
T ss_pred HHHHHHHHhhhhccCccchHHHHHHHHHHHHHHHHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666655443333333343 4344456667788888999999999999999999999999999988888888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccC--CCCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 163 TSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVD--GRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240 (1374)
Q Consensus 163 ~~~yl~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d--~~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~ 240 (1374)
...|+++++.++||+|||+++.++||++..||++.+.+ ..+|||||||++|+..|++..+++..+++.++++.+.|+.
T Consensus 105 ~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~ 184 (604)
T COG4178 105 AQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTG 184 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887 5579999999999999999999999999999999888876
Q ss_pred HHH-------------HhhhhhHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCh
Q 000647 241 RLC-------------SYASPKYVFWI-LAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGE 306 (1374)
Q Consensus 241 ~l~-------------~~~~~~l~~~~-l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge 306 (1374)
.|+ .+.+|++++|+ ++|++.++++++++||++.+++.+++++||+||+.+.|+++|+|+||+|+||
T Consensus 185 iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE 264 (604)
T COG4178 185 ILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGE 264 (604)
T ss_pred HHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCc
Confidence 554 24678999887 5677777777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHH
Q 000647 307 NKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVI 386 (1374)
Q Consensus 307 ~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~ 386 (1374)
+.|+++++++|..++++++++..+...+..++..+. ++...+++++.+|.||.|.+ ++|..++ ..+.|
T Consensus 265 ~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~-~~s~v~P~li~ap~~f~g~i-----~~G~lmq------a~~aF 332 (604)
T COG4178 265 KVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYG-WLSVVLPILIAAPRYFSGQI-----TFGGLMQ------AVGAF 332 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhh-HHHHHHHHHhccHhhhcCcC-----hHHHHHH------HHHHH
Confidence 999999999999999999999999998888888775 45567778888888998877 5665432 23456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCccCC--CCcEEEeeeEEEcCCCCeeeeee
Q 000647 387 ISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSE--ANYIEFSGVKVVTPTGNVLVENL 464 (1374)
Q Consensus 387 ~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~v~~~~~~~~~~l~~i 464 (1374)
..+..+++.+...+.++..+++...|+.++.+..+....+..............+ ...|+++|+++..|++++.++++
T Consensus 333 ~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~ll~~l 412 (604)
T COG4178 333 GQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSEL 412 (604)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCCeeeccc
Confidence 7777899999999999999999999999987654422111111111000000111 46799999999999999999999
Q ss_pred eEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccC
Q 000647 465 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 544 (1374)
Q Consensus 465 sl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~ 544 (1374)
||++++||.+.|.||||||||||+|+|+|+||..+|+|..|.. .++.|+||+||++.||+||.|+||....
T Consensus 413 ~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----~~~lflpQ~PY~p~GtLre~l~YP~~~~---- 483 (604)
T COG4178 413 NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----SALLFLPQRPYLPQGTLREALCYPNAAP---- 483 (604)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----CceEEecCCCCCCCccHHHHHhCCCCCC----
Confidence 9999999999999999999999999999999999999999842 4699999999999999999999997653
Q ss_pred CCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 000647 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA- 623 (1374)
Q Consensus 545 ~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~- 623 (1374)
..+|+++.++|.+|+|+++.+++ +.+.+|...||+|||||||+||+++++|++++|||+|||||++++..+++.+++
T Consensus 484 ~~~d~~l~~vL~~vgL~~L~~rl--~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~ 561 (604)
T COG4178 484 DFSDAELVAVLHKVGLGDLAERL--DEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEE 561 (604)
T ss_pred CCChHHHHHHHHHcCcHHHHHHH--hccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhh
Confidence 36889999999999999999994 455679999999999999999999999999999999999999999999999998
Q ss_pred -cCCEEEEEccChhhHhhccEEEEecCCCce
Q 000647 624 -MGTSCITISHRPALVAFHDVVLSLDGEGEW 653 (1374)
Q Consensus 624 -~~~TiI~vtH~~~~~~~~d~il~l~~~g~~ 653 (1374)
.+.|+|.|+||..+..+|++.+.+.+++++
T Consensus 562 lp~~tvISV~Hr~tl~~~h~~~l~l~~~~~~ 592 (604)
T COG4178 562 LPDATVISVGHRPTLWNFHSRQLELLDDAGG 592 (604)
T ss_pred CCCCEEEEeccchhhHHHHhhheeecccccc
Confidence 799999999999999999999999876654
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-79 Score=693.61 Aligned_cols=569 Identities=34% Similarity=0.585 Sum_probs=492.8
Q ss_pred chHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 000647 84 GLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHST 163 (1374)
Q Consensus 84 ~~~~l~~Ll~i~~p~~~~~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~ 163 (1374)
.++++..|++|++|...|+|+.++.+..++++.||++|++++.+.|+++..++.++...|...++.|++++++++++|++
T Consensus 97 f~k~l~~L~Kilip~vfc~e~gll~~hs~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~~LlkW~liaiPAtFvNS~ 176 (728)
T KOG0064|consen 97 FLKRLNVLSKILIPTVFCKETGLLTAQSFFLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLWDLLKWFLIAIPASFVNSA 176 (728)
T ss_pred HHHHHHHHHHHhcchHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHhhhccHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1374)
Q Consensus 164 ~~yl~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 243 (1374)
.+|++..+++.+|.+++++..+.||++.+||++++.|+++.||||++|+||..|++.++.+++++.++++|.+++++.|.
T Consensus 177 Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~ 256 (728)
T KOG0064|consen 177 IRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLL 256 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888775
Q ss_pred Hhh---hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHH
Q 000647 244 SYA---SPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKAL 320 (1374)
Q Consensus 244 ~~~---~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~ 320 (1374)
... .......+.+.+.+.+.+++.++|+|+++..++..++|.+|+.|+++.+|+|+||||+|.+.|.+.+++.|+.+
T Consensus 257 ~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L 336 (728)
T KOG0064|consen 257 DSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRL 336 (728)
T ss_pred hhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHH
Confidence 321 11111122222335667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCC-c---cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 321 TRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPD-T---STLGRAKMLSNLRYHTSVIISLFQSLGTL 396 (1374)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~-~---~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 396 (1374)
...+..+.+.+.|+.+...|+++|.++..+++++..|++.+....+ . ...|.. ....+...-..+++..+++..+
T Consensus 337 ~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~s-rt~~f~t~r~LL~saAdAieRl 415 (728)
T KOG0064|consen 337 VEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNS-RTKEFITNRRLLLSAADAIERL 415 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988776554222 1 112221 1112223345677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCC-C---CCCC--------CCCC------ccCCCCcEEEeeeEEEcCCCC
Q 000647 397 SISSRRLNRLSGYADRIHELMVISRELSIEDK-S---PQRN--------GSRN------YFSEANYIEFSGVKVVTPTGN 458 (1374)
Q Consensus 397 ~~~~~~l~~~~~~~~Ri~~~~~~~~~~~~~~~-~---~~~~--------~~~~------~~~~~~~i~~~~v~~~~~~~~ 458 (1374)
+.+++.+.+++|+..|++++++..++...... . .... .... .......|.++|+.+..|+++
T Consensus 416 MssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~ 495 (728)
T KOG0064|consen 416 MSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGD 495 (728)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCcc
Confidence 99999999999999999988766544322110 0 0000 0000 011235699999999999999
Q ss_pred eeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCccccccEEEEecCCCCCcCCHHHHhcCCCC
Q 000647 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 538 (1374)
Q Consensus 459 ~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~ 538 (1374)
.++..++|+|++|-+++|+||||||||+|+|+|.|+||...|...+|. +.+|.|+||+||+-.||+||+|.||..
T Consensus 496 vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----~~~mFYIPQRPYms~gtlRDQIIYPdS 570 (728)
T KOG0064|consen 496 VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----PNNIFYIPQRPYMSGGTLRDQIIYPDS 570 (728)
T ss_pred eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----CcceEeccCCCccCcCcccceeecCCc
Confidence 999999999999999999999999999999999999999999999885 347999999999999999999999987
Q ss_pred CCccc-CCCCHHHHHHHHHHcCChhHHhcCC-CCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 000647 539 SDQEV-EPLTHGGMVELLKNVDLEYLLDRYP-PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616 (1374)
Q Consensus 539 ~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~-~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~ 616 (1374)
.++.. ....|.++..+|+.+.|++.+++.. ++...+|.+.||||||||+++||.+||+|+..+|||||||+..+.|..
T Consensus 571 ~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~ 650 (728)
T KOG0064|consen 571 SEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGK 650 (728)
T ss_pred HHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHH
Confidence 65442 4578899999999999999999864 455568999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEEEEccChhhHhhccEEEEecCCCceEEecc
Q 000647 617 FCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDK 658 (1374)
Q Consensus 617 i~~~l~~~~~TiI~vtH~~~~~~~~d~il~l~~~g~~~~~~~ 658 (1374)
+++..+..|.+.|.||||++++++|.+.+..|++|+|.+..-
T Consensus 651 i~~~ak~~gi~llsithrpslwk~h~~ll~~dg~g~~q~~~l 692 (728)
T KOG0064|consen 651 IFQAAKDAGISLLSITHRPSLWKYHTHLLEFDGEGGWQFRAL 692 (728)
T ss_pred HHHHHHhcCceEEEeecCccHHHHHHHHHhccCCCCeeeccC
Confidence 999999999999999999999999999999999999987643
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-78 Score=694.85 Aligned_cols=574 Identities=36% Similarity=0.601 Sum_probs=477.1
Q ss_pred chHHHHhhHhhhccccccchhhHHHHHHHHHHH-HHHHHHHHHhhhchHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 738 LPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVS-RTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAP 816 (1374)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1374)
.+.++.+++++++|..+.++.++++.+.+.... .+..+..+....+..+.++..+|...|...+..++++..+.+.+..
T Consensus 61 f~~k~~~ilkil~p~~~~~~~~~l~l~~~~l~~~~~~~~y~~~~~~~~~y~al~~kd~~~F~~~~~~~~~~~~~~s~~~a 140 (659)
T KOG0060|consen 61 FFQKFLQILKILFPSTFSSQTALLLLALVALTLLTTADVYMIGNIPTKFYVALINKDAELFKRLLFKYVLLIPGISLLNA 140 (659)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHhHhheecccchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788899999887777766655443332 3333333444455555666778888898888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeecCCCCCCCCccchHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q 000647 817 SIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRM 896 (1374)
Q Consensus 817 ~~~~~~~~~~~~~~~~l~~~l~~~~lr~~~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~~~~~~~~~~~~~~~~w~l 896 (1374)
...+.+..+.++||.++++++++.|+++..||++.+.+...+|||||+++|+++++..++.+...++.+.+++++|+|++
T Consensus 141 ~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l 220 (659)
T KOG0060|consen 141 LLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRL 220 (659)
T ss_pred HHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHH
Confidence 88889999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 000647 897 KALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLE 976 (1374)
Q Consensus 897 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~~g~~~e~~~~~~~~~~ll~ 976 (1374)
+...|+.+.+.+++|++++..+.+...+++..++..++++||+||+.|.+++.|+|+||||+|+..|+.+...+|+.+++
T Consensus 221 ~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~ 300 (659)
T KOG0060|consen 221 FESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQ 300 (659)
T ss_pred hhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 977 HSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKF 1056 (1374)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~ 1056 (1374)
+.+..+..+|+.++.++++. .+...+.|.+... ..+.+....-.++.++...+..-+.++..++.+|+.+..+...+
T Consensus 301 ~l~~l~~~r~~l~f~~n~~~-Ylg~ilsy~vi~~--p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~l 377 (659)
T KOG0060|consen 301 HLRELMSFRFWLGFIDNIFD-YLGGILSYVVIAI--PFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDL 377 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhheeeEEee--eeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 99999888898888876654 3333333221100 01111111112356666666666667777888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC------------CCccCCCCCCCCCCC-CCCCEEEeeeEEeCCC-cccccccceEE
Q 000647 1057 VELSGGINRIFELEELLDAAQPGD------------DEISGSSQHKWNSTD-YQDSISFSKLDIITPS-QKLLARQLTFE 1122 (1374)
Q Consensus 1057 ~~~~~~~~Ri~~l~~~~~~~~~~~------------~~~~~~~~~~w~~~~-~~g~I~f~~V~~~yp~-~~~vL~~ls~~ 1122 (1374)
.+++|.+.||.|+.+..+...... .......++.|+... .+..|+|++|++.+|+ ++.+.+||||+
T Consensus 378 s~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~ 457 (659)
T KOG0060|consen 378 SRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLE 457 (659)
T ss_pred HHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeE
Confidence 999999999999998866543211 000112233333321 2457999999999999 66777889999
Q ss_pred EeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecCCCCCCCcchHHHhccCCChhHHH
Q 000647 1123 IVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAE 1202 (1374)
Q Consensus 1123 I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~ 1202 (1374)
|+.|+.++||||||||||||+|+|.+|||..+|+++.+...-. ..+.||||+||+..||+|||++||....+.
T Consensus 458 V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~- 530 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDM- 530 (659)
T ss_pred ecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC------CceEEecCCCCccccchhheeeccCccccc-
Confidence 9999999999999999999999999999999999998765211 359999999999999999999999764321
Q ss_pred HHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccc--cccccCCChhhhhhhccccchhhHHhhhccc
Q 000647 1203 LRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN--LNWEDILSLGEQQRLGMVSHLVLIQLCSINK 1280 (1374)
Q Consensus 1203 ~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~--~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~ 1280 (1374)
+....+|+++..+||.|+|.+++++. +|||++ .+|.+.||+||||||||
T Consensus 531 --------------~~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GEqQRLa~-------------- 581 (659)
T KOG0060|consen 531 --------------DSKSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGEQQRLAF-------------- 581 (659)
T ss_pred --------------cccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHHHHHHHH--------------
Confidence 12346789999999999999999996 899965 58999999999999999
Q ss_pred ccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHhcCceEEEecCCCCchhhccceEEE
Q 000647 1281 ISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRL 1360 (1374)
Q Consensus 1281 ~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~~~~TvI~IaHRl~~i~~~~~~l~l 1360 (1374)
||.+++|||+.+|||||||+|.|+|.++|+.++++|+|+|+|+||.++.+||+.+|++
T Consensus 582 ----------------------ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfHd~~L~~ 639 (659)
T KOG0060|consen 582 ----------------------ARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFHDYVLRM 639 (659)
T ss_pred ----------------------HHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhhhEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCeEEEeCC
Q 000647 1361 IDGEGNWELRTIS 1373 (1374)
Q Consensus 1361 ~~g~g~~~~~~~~ 1373 (1374)
||+|+|+++.|+
T Consensus 640 -~g~g~w~~~~I~ 651 (659)
T KOG0060|consen 640 -DGRGSWRFHQID 651 (659)
T ss_pred -cCCCceEEEEec
Confidence 999999999885
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-69 Score=688.74 Aligned_cols=562 Identities=34% Similarity=0.606 Sum_probs=468.7
Q ss_pred hHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTS 164 (1374)
Q Consensus 85 ~~~l~~Ll~i~~p~~~~~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~ 164 (1374)
++++.+|++++.|+|.++++..++++++++++++++++.+|.+.+.++|++.+++...|...++.+++++++.++++++.
T Consensus 76 ~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~ 155 (659)
T TIGR00954 76 LGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAI 155 (659)
T ss_pred HHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999988899999999999999999999999999999988888877777777777778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1374)
Q Consensus 165 ~yl~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 244 (1374)
+|+.+++..+||++++++++++|+++..+|++.++|++.+|++||+|+|++.+++.+...+..++.++++.+.+.+.++.
T Consensus 156 ~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 156 KYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999988887777765
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 000647 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1374)
Q Consensus 245 ~~~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~ 324 (1374)
..+|.+++.+++++++..++.+++++++.+++.++++.+++++..+.+..+|+|+|++|++|+.|.+++++.++++.++.
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888888889999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc-ccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGN-LKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1374)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 403 (1374)
.+..+....+..+..++..+....++++++..+++... ...+..+.|.. ++.+.....++..++.++..+......+
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~--~~~f~~~~~~~~~l~~~~~~l~~~~~~i 393 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEEL--MQEFYNNGRLLLKAADALGRLMLAGRDM 393 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777776666544444444444434443211 11123344432 2212222334556778889999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccccC--C-CCCC-CC-------------CCCccCCCCcEEEeeeEEEcCCCCeeeeeeeE
Q 000647 404 NRLSGYADRIHELMVISRELSIED--K-SPQR-NG-------------SRNYFSEANYIEFSGVKVVTPTGNVLVENLTL 466 (1374)
Q Consensus 404 ~~~~~~~~Ri~~~~~~~~~~~~~~--~-~~~~-~~-------------~~~~~~~~~~i~~~~v~~~~~~~~~~l~~isl 466 (1374)
+++.++++|+.++++.+++.+.+. . .... .. ........+.++++||++.||+++++++|+||
T Consensus 394 ~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~isl 473 (659)
T TIGR00954 394 TRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCCeeeecceE
Confidence 999999999999998755432100 0 0000 00 00011123569999999999877789999999
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCccccccEEEEecCCCCCcCCHHHHhcCCCCCCcc-cCC
Q 000647 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEP 545 (1374)
Q Consensus 467 ~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~-~~~ 545 (1374)
++++||+++|+||||||||||+++|+|+|+|++|+|.+++ +++++||||+|+++++|++|||.++...... ...
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 548 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRG 548 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccC
Confidence 9999999999999999999999999999999999999875 4579999999999999999999997532111 112
Q ss_pred CCHHHHHHHHHHcCChhHHhcCCC--CccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 000647 546 LTHGGMVELLKNVDLEYLLDRYPP--EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623 (1374)
Q Consensus 546 ~~~~~~~~~l~~~~L~~~~~~~~~--~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~ 623 (1374)
.+++++.++++.+++++++++ |. ++..+|+.+||||||||++||||++++|+++|||||||+||+++++.+++.+++
T Consensus 549 ~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 549 LSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE 627 (659)
T ss_pred CCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 456788999999999999887 54 344468889999999999999999999999999999999999999999999988
Q ss_pred cCCEEEEEccChhhHhhccEEEEecCCCceE
Q 000647 624 MGTSCITISHRPALVAFHDVVLSLDGEGEWR 654 (1374)
Q Consensus 624 ~~~TiI~vtH~~~~~~~~d~il~l~~~g~~~ 654 (1374)
.|+|+|+||||++.+++||++++++++|+|.
T Consensus 628 ~~~tvI~isH~~~~~~~~d~il~l~~~g~~~ 658 (659)
T TIGR00954 628 FGITLFSVSHRKSLWKYHEYLLYMDGRGGYQ 658 (659)
T ss_pred cCCEEEEEeCchHHHHhCCEEEEEeCCCCcc
Confidence 8999999999999999999999999988885
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-68 Score=632.82 Aligned_cols=529 Identities=21% Similarity=0.268 Sum_probs=415.3
Q ss_pred hHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCh-hHHHHHHHHHHHHHHHHHHHHH
Q 000647 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFL-RRV-PLFFQLISENILLCFLLSTMHS 162 (1374)
Q Consensus 85 ~~~l~~Ll~i~~p~~~~~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~-~~~-~~f~~~l~~~~~~~~~~~~~~~ 162 (1374)
...++||+..+-|.|+ .+.+.++++++...+++.+|++.|++.|.+.. .+. ..|.+......++.++.++++.
T Consensus 132 ~~~~~rl~~l~~~~~~-----~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~ 206 (716)
T KOG0058|consen 132 HTLLKRLLGLLKPEWK-----WLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANA 206 (716)
T ss_pred hhHHHHHHHHhchhHH-----HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477899999988766 36677777888888999999999999999987 333 3333333333333344444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC-CCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 163 TSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWR 241 (1374)
Q Consensus 163 ~~~yl~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~-~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~ 241 (1374)
+..|+-+.... ++..+++...|++...++++|||. +.++..+|++.|...+.+.+...+...+.+.+.++. ...
T Consensus 207 ~r~~~~~~a~~----rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g-~~~ 281 (716)
T KOG0058|consen 207 IRGGLLQYAGE----RVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFG-GLG 281 (716)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHH
Confidence 55555555555 478888889999999999999986 578999999999999999999999888888776544 345
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHH
Q 000647 242 LCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALT 321 (1374)
Q Consensus 242 l~~~~~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~ 321 (1374)
+|++.||.++++.++.+++...+...+|+.+.++..+.|+.-|...+..++...+..+|+.|++|+.|.+++++..++..
T Consensus 282 ~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~ 361 (716)
T KOG0058|consen 282 FMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVL 361 (716)
T ss_pred HHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHH
Confidence 56778999999988888888888889999999999999998888877777777788889999999999976666655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 322 RHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKP-DTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISS 400 (1374)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 400 (1374)
+-.++.. ...+.++. ...+++.. ..+...+++|.+.. +..+.| .+.+++.|. ..+..++..+...+
T Consensus 362 ~i~~k~a---~a~~~f~~-~~~~~~~~---~~~siL~~Gg~Lv~~g~mt~g--~L~sFllY~----~~~g~sl~~ls~~y 428 (716)
T KOG0058|consen 362 KLSKKEA---VAYGIFFG-STNLLGNL---AVLSILFYGGHLVLTGSLTSG--ALSSFLLYQ----VQLGSSLSGLSSFY 428 (716)
T ss_pred HHHHHHH---HHhhHhHh-HHHHHHhH---HHHHHHHhccchhhcCccchh--HHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4332211 11111111 11111111 11112234555532 233444 344444333 34456777888889
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCC--CeeeeeeeEEEeCCCEEEEEc
Q 000647 401 RRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITG 478 (1374)
Q Consensus 401 ~~l~~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~--~~~l~~isl~i~~Ge~~~IvG 478 (1374)
..+.+..++.+|++|++++.+..+..+.. .+..-.+.|+|+||+|.||+. .++|+|+||+|+|||.+|+||
T Consensus 429 s~lmkgvGAs~rvFel~dr~P~i~~~G~~-------~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVG 501 (716)
T KOG0058|consen 429 SELMKGVGASERVFELMDRKPRIPLTGTL-------APDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVG 501 (716)
T ss_pred HHHHHhcchHHHHHHHhccCCCCCCCCcc-------ccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEEC
Confidence 99999999999999999988766432110 001135789999999999975 469999999999999999999
Q ss_pred CCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHH
Q 000647 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552 (1374)
Q Consensus 479 ~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~ 552 (1374)
|||+||||+.++|.++|+|++|+|.+||.+ ..+|++||+|.|+|.||++||+|||.||.. ..+++++.
T Consensus 502 PSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~------~~t~e~i~ 575 (716)
T KOG0058|consen 502 PSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD------NATDEEIE 575 (716)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC------CCCHHHHH
Confidence 999999999999999999999999999986 347899999999999999999999999976 36889999
Q ss_pred HHHHHcCChhHHhcCCCCcccc---CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCE
Q 000647 553 ELLKNVDLEYLLDRYPPEKEIN---WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTS 627 (1374)
Q Consensus 553 ~~l~~~~L~~~~~~~~~~~~~~---~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~T 627 (1374)
++.+.++.++|+..+|++++|. .|.+|||||||||||||||++||.||||||+|||||.++|..+.+.+.+ .++|
T Consensus 576 ~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rT 655 (716)
T KOG0058|consen 576 AAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRT 655 (716)
T ss_pred HHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCe
Confidence 9999999999999999988774 5789999999999999999999999999999999999999999999975 5899
Q ss_pred EEEEccChhhHhhccEEEEecC
Q 000647 628 CITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 628 iI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+|+|+||+++++.+|+|+++++
T Consensus 656 VlvIAHRLSTV~~Ad~Ivvi~~ 677 (716)
T KOG0058|consen 656 VLVIAHRLSTVRHADQIVVIDK 677 (716)
T ss_pred EEEEehhhhHhhhccEEEEEcC
Confidence 9999999999999999999986
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-69 Score=642.52 Aligned_cols=467 Identities=21% Similarity=0.269 Sum_probs=314.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CcceeeecCCCCCCCCccchHHHHHHHHHHHHHHHH
Q 000647 802 GVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVT 880 (1374)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~-~~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~~~ 880 (1374)
++.+..+++..+-...+.+..++...+.| ..++++.+++ ..|||... ..|+.+|++.|.+.+...++..+.
T Consensus 196 ~l~~~~a~~~~~r~~~~~~a~~rv~~rlR----~~lF~sil~QdiaFFD~nk----tGeL~SRLtsD~~~vs~svs~nls 267 (716)
T KOG0058|consen 196 GLFLIGALANAIRGGLLQYAGERVVARLR----TDLFRSLLRQDIAFFDENK----TGELISRLTSDTQIVSNSVSQNLS 267 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhhhccCC----ccHHHhhhhhhHHHHHHHHHHHHH
Confidence 33444444444444455555555555555 5555555654 69998643 356899999999877665544333
Q ss_pred ----HhhH---hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHH
Q 000647 881 ----GMVK---PSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAES 953 (1374)
Q Consensus 881 ----~~~~---~~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aes 953 (1374)
.++. .+...++.+|+|++++-. .+++.++....|-+ .+.+++.+.|..-+......+..-.+..+
T Consensus 268 ~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i----~~P~v~~~~~~yG~----~~rklS~~~Q~a~A~a~~vaeE~ls~~rT 339 (716)
T KOG0058|consen 268 DGLRNLVQGFGGLGFMFSLSWRLTLVTLI----VVPIVALVAKIYGK----YLRKLSKQTQDALARANQVAEEVLSAMRT 339 (716)
T ss_pred HHHHHHHHHHHhHHHHhhhhHHHHHHHHH----HhcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2222 234457789999988621 11111111111211 12233333333322222222333345678
Q ss_pred hhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHhhhhhHHHHHHHHHHHhhhcccchhhhhhhHHHHHH
Q 000647 954 VAFFGGGAREKAMIESRFRELLEHSLLLLKKKW-LFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHAL 1032 (1374)
Q Consensus 954 Ia~~~g~~~e~~~~~~~~~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~a~ 1032 (1374)
++.|+.+..|.+. |.+.+++.....++.. .+++. .+.+. +..+......++|+........+ +.|++..-+
T Consensus 340 VRsfa~E~~E~~r----y~~~l~~~~~i~~k~a~a~~~f-~~~~~-~~~~~~~~siL~~Gg~Lv~~g~m--t~g~L~sFl 411 (716)
T KOG0058|consen 340 VRSFAAEEQEVKR----YNKKLREVLKLSKKEAVAYGIF-FGSTN-LLGNLAVLSILFYGGHLVLTGSL--TSGALSSFL 411 (716)
T ss_pred HHHhhhhHHHHHH----HHHHHHHHHHHHHHHHHHhhHh-HhHHH-HHHhHHHHHHHHhccchhhcCcc--chhHHHHHH
Confidence 9999876666554 4444444333333322 22221 11111 11222223345566433222211 234432222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCCc
Q 000647 1033 RFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ 1112 (1374)
Q Consensus 1033 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~ 1112 (1374)
. +..+...+...+...+....+..+|.+|+||++++.|..++. +. .-|. ..+|.|+|+||+|.||++
T Consensus 412 l----Y~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~-----G~---~~p~-~~~G~IeF~~VsFaYP~R 478 (716)
T KOG0058|consen 412 L----YQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT-----GT---LAPD-HLQGVIEFEDVSFAYPTR 478 (716)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC-----Cc---cccc-cccceEEEEEeeeecCCC
Confidence 1 222333455556666777778889999999999876443321 11 1122 358999999999999996
Q ss_pred c--cccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcch
Q 000647 1113 K--LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTL 1188 (1374)
Q Consensus 1113 ~--~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTl 1188 (1374)
| +||+|+||+|+|||+||+||||||||||+.++|+|||+|++|+|++||+||+++ .++|++|++|.|||+||+|||
T Consensus 479 p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI 558 (716)
T KOG0058|consen 479 PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSI 558 (716)
T ss_pred CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccH
Confidence 4 699999999999999999999999999999999999999999999999999999 488999999999999999999
Q ss_pred HHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccc
Q 000647 1189 RDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMV 1267 (1374)
Q Consensus 1189 R~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~ 1267 (1374)
||||.||.+. ..|+++..+.+.++-++++..+|+||||.+ ++|.+|||||||||||
T Consensus 559 ~eNI~YG~~~----------------------~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAI- 615 (716)
T KOG0058|consen 559 RENIAYGLDN----------------------ATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAI- 615 (716)
T ss_pred HHHHhcCCCC----------------------CCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHH-
Confidence 9999999752 234444444455555667888999999998 5899999999999999
Q ss_pred cchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEec
Q 000647 1268 SHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSS 1345 (1374)
Q Consensus 1268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~Ia 1345 (1374)
||||+|||+||||||||||||+++|..+++.+.. .++|||+||
T Consensus 616 -----------------------------------ARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIA 660 (716)
T KOG0058|consen 616 -----------------------------------ARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIA 660 (716)
T ss_pred -----------------------------------HHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEe
Confidence 9999999999999999999999999988887642 589999999
Q ss_pred CCCCchhhccceEEEEcC
Q 000647 1346 QRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1346 HRl~~i~~~~~~l~l~~g 1363 (1374)
|||+||+-.|.++.+.+|
T Consensus 661 HRLSTV~~Ad~Ivvi~~G 678 (716)
T KOG0058|consen 661 HRLSTVRHADQIVVIDKG 678 (716)
T ss_pred hhhhHhhhccEEEEEcCC
Confidence 999999999999999544
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=600.56 Aligned_cols=563 Identities=36% Similarity=0.641 Sum_probs=469.3
Q ss_pred HHHHhhHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 740 LRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIR 819 (1374)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1374)
.++..+.++++|..+.+..+++....+.+.+++|++..++.++|..++...+++...|...++-.++.++..+|++.+++
T Consensus 99 k~l~~L~Kilip~vfc~e~gll~~hs~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~~LlkW~liaiPAtFvNS~Ir 178 (728)
T KOG0064|consen 99 KRLNVLSKILIPTVFCKETGLLTAQSFFLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLWDLLKWFLIAIPASFVNSAIR 178 (728)
T ss_pred HHHHHHHHHhcchHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 34556788999999988888888888999999999999999999998888888888887666667788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcceeeecCCCCCCCCccchHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Q 000647 820 HLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKAL 899 (1374)
Q Consensus 820 ~~~~~~~~~~~~~l~~~l~~~~lr~~~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~~~~~~~~~~~~~~~~w~l~~~ 899 (1374)
++...+++.+|.+++.|+++.||.+..||++.|+.+..-|+||++|+|+..++...+.+...+.+|+++++.++..+...
T Consensus 179 yle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s 258 (728)
T KOG0064|consen 179 YLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDS 258 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999988887766
Q ss_pred hhhhHH---HHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 000647 900 TGQRGV---AILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLE 976 (1374)
Q Consensus 900 ~~~~~v---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~~g~~~e~~~~~~~~~~ll~ 976 (1374)
..+.+. .++...+.+....+|.++|+|+++..+..+.++.+|+.|.++-+++|.||||||...|.+.++..|..+.+
T Consensus 259 ~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~ 338 (728)
T KOG0064|consen 259 ATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVE 338 (728)
T ss_pred hccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 655443 23445556667789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHH-HHH-------Hhhhcccc-----hhhhhhhHHHHHHHHHHHHHHHHH
Q 000647 977 HSLLLLKKKWLFGILDDFVTKQLPHNVTWGLS-LLY-------AMEHKGDR-----ALVSTQGELAHALRFLASVVSQSF 1043 (1374)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~~-------~~~~~~~~-----~~~~~~~~~~~a~~~~a~~~~~~~ 1043 (1374)
......+++.|+-++.+|+.+. +|+-+ +++ +....... ...+...++..+-+. .....
T Consensus 339 qm~li~k~r~~YiMleqF~mKY-----vWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~L----L~saA 409 (728)
T KOG0064|consen 339 QMNLIFKVRLWYIMLEQFVMKY-----TWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRL----LLSAA 409 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHH----HHHHH
Confidence 9888888998988888777653 34321 111 10000000 001111222222221 22345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc--------cCC-----CCCCCCC---CCCCCCEEEeeeEE
Q 000647 1044 LAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEI--------SGS-----SQHKWNS---TDYQDSISFSKLDI 1107 (1374)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~--------~~~-----~~~~w~~---~~~~g~I~f~~V~~ 1107 (1374)
.+.+++++.+++++++.|..+|++++.+..++++...... .+. ....-|. ......|.|+||.+
T Consensus 410 dAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpv 489 (728)
T KOG0064|consen 410 DAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPV 489 (728)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCce
Confidence 6788899999999999999999999887766543321110 000 0000000 11234699999999
Q ss_pred eCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecCCCCCCCcc
Q 000647 1108 ITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGT 1187 (1374)
Q Consensus 1108 ~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ~P~Lf~GT 1187 (1374)
.+|+...|...+||.|+||.+++|+||||||||||++.|.|+||...|...+|.. .+|+||||+||+--||
T Consensus 490 ItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~---------~~mFYIPQRPYms~gt 560 (728)
T KOG0064|consen 490 ITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRP---------NNIFYIPQRPYMSGGT 560 (728)
T ss_pred eccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCC---------cceEeccCCCccCcCc
Confidence 9999999999999999999999999999999999999999999999999999876 4699999999999999
Q ss_pred hHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCChhhhhhhccc
Q 000647 1188 LRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMV 1267 (1374)
Q Consensus 1188 lR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSgGQrQrlai~ 1267 (1374)
+||+|+||.+.++- . . -...|.++..+|..|+|.+++++. +|||...+|.+.||||||||++|
T Consensus 561 lRDQIIYPdS~e~~--~---~----------kg~~d~dL~~iL~~v~L~~i~qr~-~g~da~~dWkd~LsgGekQR~~m- 623 (728)
T KOG0064|consen 561 LRDQIIYPDSSEQM--K---R----------KGYTDQDLEAILDIVHLEHILQRE-GGWDAVRDWKDVLSGGEKQRMGM- 623 (728)
T ss_pred ccceeecCCcHHHH--H---h----------cCCCHHHHHHHHHHhhHHHHHHhc-cChhhhccHHhhccchHHHHHHH-
Confidence 99999999875432 1 1 146788999999999999999885 78999999999999999999999
Q ss_pred cchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHhcCceEEEecCC
Q 000647 1268 SHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQR 1347 (1374)
Q Consensus 1268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~~~~TvI~IaHR 1347 (1374)
||.+.|+||..+|||||||++.|+|..+++.+++.|++.|+|+||
T Consensus 624 -----------------------------------ARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithr 668 (728)
T KOG0064|consen 624 -----------------------------------ARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHR 668 (728)
T ss_pred -----------------------------------HHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecC
Confidence 999999999999999999999999999999999999999999999
Q ss_pred CCchhhccceEEEEcCCCCeEEEeCC
Q 000647 1348 PALIPFHSLELRLIDGEGNWELRTIS 1373 (1374)
Q Consensus 1348 l~~i~~~~~~l~l~~g~g~~~~~~~~ 1373 (1374)
+++++||+..|.+ ||+|+|.++...
T Consensus 669 pslwk~h~~ll~~-dg~g~~q~~~ln 693 (728)
T KOG0064|consen 669 PSLWKYHTHLLEF-DGEGGWQFRALN 693 (728)
T ss_pred ccHHHHHHHHHhc-cCCCCeeeccCC
Confidence 9999999999999 999999998753
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=599.07 Aligned_cols=514 Identities=27% Similarity=0.431 Sum_probs=416.4
Q ss_pred HHHHHHhhhchHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeecC
Q 000647 774 ISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNM 853 (1374)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~~f~~~~~~ 853 (1374)
...+++.+++..++.+...|...|+..+.++...++....+.....++..++..+||++|+.+++++||.+..||+....
T Consensus 62 ~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~ 141 (604)
T COG4178 62 GQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQA 141 (604)
T ss_pred eeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhc
Confidence 33445556677778888888889988888887777777777888889999999999999999999999999999998777
Q ss_pred C--CCCCCCccchHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhhhh--------------HHHHHHHHHHHHHH
Q 000647 854 S--SKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQR--------------GVAILYAYMLLGLG 917 (1374)
Q Consensus 854 ~--~~~~d~~~ri~~D~~~l~~~l~~~~~~~~~~~~~~~~~~w~l~~~~~~~--------------~v~i~~~~~~~~~~ 917 (1374)
+ ...+|||||+++|+..++.....+..+++.+++.++.|+-.|+.+++.. .+..++.|...+..
T Consensus 142 ~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~ 221 (604)
T COG4178 142 GGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASL 221 (604)
T ss_pred ccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHH
Confidence 6 4458999999999999999999999999999888888888887665531 23445667777777
Q ss_pred HHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 000647 918 FLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTK 997 (1374)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~~g~~~e~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 997 (1374)
....+++++.+++.+++++|++||+.+.++++++|+||+|+|++.|++.+..+|...++++..+..+...+....... .
T Consensus 222 ~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy-~ 300 (604)
T COG4178 222 LTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGY-G 300 (604)
T ss_pred HHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhh-h
Confidence 777889999999999999999999999999999999999999999999999999999998877665544333322111 1
Q ss_pred hhhhHHHHHHHHHHHhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000647 998 QLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQ 1077 (1374)
Q Consensus 998 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~ 1077 (1374)
++...+.+.++.. ....|.. +.|.+ +..++++.++..+++++...++.++++.+.++|+.++.+..++.+
T Consensus 301 ~~s~v~P~li~ap--~~f~g~i----~~G~l----mqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~ 370 (604)
T COG4178 301 WLSVVLPILIAAP--RYFSGQI----TFGGL----MQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQ 370 (604)
T ss_pred HHHHHHHHHhccH--hhhcCcC----hHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111111111100 0112221 23333 334466677888999999999999999999999999998877544
Q ss_pred CCCCCccCCC-CCCCCCCCCCCCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCe
Q 000647 1078 PGDDEISGSS-QHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS 1156 (1374)
Q Consensus 1078 ~~~~~~~~~~-~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~ 1156 (1374)
.+........ .-..-... +..|.|+|++...|++...++++||+|+|||++.|.|+||||||||+++|.|+||..+|+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~-~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~ 449 (604)
T COG4178 371 MDTEKPARTGRRIDFDDNA-DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR 449 (604)
T ss_pred CcccccCcccccccccccc-cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCc
Confidence 2111111000 00000111 478999999999999889999999999999999999999999999999999999999999
Q ss_pred EecCCCccccccCCcccEEEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCc
Q 000647 1157 LTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 1236 (1374)
Q Consensus 1157 I~idg~dI~~~~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~ 1236 (1374)
|.+|.. +.+.|+||+||+..||+||.|+||.+. ....|+++.++|.+|+|+
T Consensus 450 I~~P~~---------~~~lflpQ~PY~p~GtLre~l~YP~~~--------------------~~~~d~~l~~vL~~vgL~ 500 (604)
T COG4178 450 ISMPAD---------SALLFLPQRPYLPQGTLREALCYPNAA--------------------PDFSDAELVAVLHKVGLG 500 (604)
T ss_pred eecCCC---------CceEEecCCCCCCCccHHHHHhCCCCC--------------------CCCChHHHHHHHHHcCcH
Confidence 999954 568999999999999999999999752 136799999999999999
Q ss_pred hhhhhhccCCccccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEee
Q 000647 1237 YLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILD 1316 (1374)
Q Consensus 1237 ~~v~~~~~Gldt~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLD 1316 (1374)
++++++ |....|...||+|||||||+ ||+++||||+++||
T Consensus 501 ~L~~rl----~~~~~W~~vLS~GEqQRlaf------------------------------------ARilL~kP~~v~LD 540 (604)
T COG4178 501 DLAERL----DEEDRWDRVLSGGEQQRLAF------------------------------------ARLLLHKPKWVFLD 540 (604)
T ss_pred HHHHHH----hccCcHhhhcChhHHHHHHH------------------------------------HHHHHcCCCEEEEe
Confidence 999986 44456999999999999999 99999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCCCCeEE
Q 000647 1317 ECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGEGNWEL 1369 (1374)
Q Consensus 1317 EaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~l~~g~g~~~~ 1369 (1374)
|||||||+++|..|++++++ .++|+|.|+||.+...||++.|++ +++|+|..
T Consensus 541 EATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l-~~~~~~~~ 594 (604)
T COG4178 541 EATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLEL-LDDAGGQN 594 (604)
T ss_pred cchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheee-cccccccc
Confidence 99999999999999999887 799999999999999999999999 68888753
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-59 Score=601.67 Aligned_cols=528 Identities=19% Similarity=0.204 Sum_probs=390.8
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLR-RVPLFFQLISENILLCFLLSTMHSTSK 165 (1374)
Q Consensus 87 ~l~~Ll~i~~p~~~~~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~-~~~~f~~~l~~~~~~~~~~~~~~~~~~ 165 (1374)
.++++++.+.|.++ .++..+++.++.+.+.+.+|.+.+.++|.+..+ +...|...++..+++ .++..+..
T Consensus 148 ~~~~l~~~~~~~~~-----~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 218 (711)
T TIGR00958 148 LLFRLLGLSGRDWP-----WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLL----SIASSVSA 218 (711)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----HHHHHHHH
Confidence 34566666655443 356667778888899999999999999998744 445555433322222 22233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC-CCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1374)
Q Consensus 166 yl~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~-~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 244 (1374)
+++..+......++..+++.+.+++....+++++++ ..++..+|+++|++.+.+.+...+..++..++..+...+. +.
T Consensus 219 ~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~-l~ 297 (711)
T TIGR00958 219 GLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGF-ML 297 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 455555555555677788888888888888887765 4579999999999999888777666666555544333332 33
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 000647 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1374)
Q Consensus 245 ~~~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~ 324 (1374)
+.+|.+++++++..++..++..+++++..+...+.++.++++........+++++|+.|++|+.|.+++++..++..+..
T Consensus 298 ~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 377 (711)
T TIGR00958 298 WLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLN 377 (711)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 56787777766666666666677888888888888888888888888888899999999999999988888877766654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLN 404 (1374)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 404 (1374)
.+.............++. .+...+.+.+....+..|. .+.|.. ++. ..+...+..++..+...+..+.
T Consensus 378 ~~~~~~~~~~~~~~~~~~-~~~~~~il~~g~~lv~~g~-----it~G~l--va~----~~~~~~l~~~l~~l~~~~~~~~ 445 (711)
T TIGR00958 378 KRKALAYAGYLWTTSVLG-MLIQVLVLYYGGQLVLTGK-----VSSGNL--VSF----LLYQEQLGEAVRVLSYVYSGMM 445 (711)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCC-----CCHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 443222222222221111 1111111111111112232 345532 222 2233455667778888889999
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCC--CCeeeeeeeEEEeCCCEEEEEcCCCC
Q 000647 405 RLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGS 482 (1374)
Q Consensus 405 ~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~--~~~~l~~isl~i~~Ge~~~IvG~sGs 482 (1374)
+..++.+|+.++++.+++...... .......+.|+++||+|.||+ ++++|+|+||+|++||+++|+|||||
T Consensus 446 ~~~~a~~ri~~~l~~~~~~~~~~~-------~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGs 518 (711)
T TIGR00958 446 QAVGASEKVFEYLDRKPNIPLTGT-------LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGS 518 (711)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCC-------CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCC
Confidence 999999999999876543221100 000112356999999999986 35799999999999999999999999
Q ss_pred chhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHH
Q 000647 483 GKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556 (1374)
Q Consensus 483 GKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~ 556 (1374)
|||||+++|+|+|+|++|+|.+||.+ .+++++|+||||+|++|++|+||||.|+.+. .+++++.++++
T Consensus 519 GKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~------~~~e~i~~al~ 592 (711)
T TIGR00958 519 GKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD------TPDEEIMAAAK 592 (711)
T ss_pred CHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCC------CCHHHHHHHHH
Confidence 99999999999999999999999975 3467899999999999999999999998542 45788999999
Q ss_pred HcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEcc
Q 000647 557 NVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISH 633 (1374)
Q Consensus 557 ~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~~~~TiI~vtH 633 (1374)
.++++++++++|.+.++ +.|.+||||||||++||||++++|+++|||||||+||+++++.+++.....++|+|+|||
T Consensus 593 ~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItH 672 (711)
T TIGR00958 593 AANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAH 672 (711)
T ss_pred HcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEec
Confidence 99999999999977665 467899999999999999999999999999999999999999999843446899999999
Q ss_pred ChhhHhhccEEEEecC
Q 000647 634 RPALVAFHDVVLSLDG 649 (1374)
Q Consensus 634 ~~~~~~~~d~il~l~~ 649 (1374)
|++.++.+|+|+++++
T Consensus 673 rl~~i~~aD~IivL~~ 688 (711)
T TIGR00958 673 RLSTVERADQILVLKK 688 (711)
T ss_pred cHHHHHhCCEEEEEEC
Confidence 9999999999999986
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-58 Score=589.00 Aligned_cols=565 Identities=37% Similarity=0.633 Sum_probs=423.6
Q ss_pred HHHhhHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 741 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRH 820 (1374)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1374)
++..+++.+.|.+.+++.+.+...+...+..++++..++.+.+..+..+...+...|...+...++..++.+++.....+
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677778877665555655556666667777666666666666555555556665555555556666777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcceeeecCCCCCCCCccchHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhh
Q 000647 821 LTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALT 900 (1374)
Q Consensus 821 ~~~~~~~~~~~~l~~~l~~~~lr~~~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~~~~~~~~~~~~~~~~w~l~~~~ 900 (1374)
+..++...||.+++.++.+.|+++..+|+....+....|+++|+++|++.+...+...+..++.++++++++.+.+....
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~ 237 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTAL 237 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999888888654443557899999999999999988888888888877777666665533
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHH
Q 000647 901 GQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLL 980 (1374)
Q Consensus 901 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~~g~~~e~~~~~~~~~~ll~~~~~ 980 (1374)
++....++++++.+.....+...+++.+...+.++.++.++..+.....+.|+|++|+++..|.+.+.+.+.++.+....
T Consensus 238 ~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~ 317 (659)
T TIGR00954 238 GSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNL 317 (659)
T ss_pred chHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555556666777788899999999999999999999999999999999999999999999999988887766
Q ss_pred HHHHHHHhhhHHHHHHhhhhhHHHH-HHHHHHHhhhcc-cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 981 LLKKKWLFGILDDFVTKQLPHNVTW-GLSLLYAMEHKG-DRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVE 1058 (1374)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~l~~~~~~~~-~~~~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~ 1058 (1374)
..+...++..+..++.......+.+ +.+..+. ...+ ..+ ..+.+.+...+......+.+.+.+++.+.....++.+
T Consensus 318 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~-~~~~~~~g-~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 318 IIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIF-DKTHPAFL-EMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccccc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444443332211111111 1111111 0110 000 0122332222222223344566788888899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC----CCccCC--------CCCCCC---CCCCCCCEEEeeeEEeCCCcccccccceEEE
Q 000647 1059 LSGGINRIFELEELLDAAQPGD----DEISGS--------SQHKWN---STDYQDSISFSKLDIITPSQKLLARQLTFEI 1123 (1374)
Q Consensus 1059 ~~~~~~Ri~~l~~~~~~~~~~~----~~~~~~--------~~~~w~---~~~~~g~I~f~~V~~~yp~~~~vL~~ls~~I 1123 (1374)
+.++++||+++.+.+++.+... ...... ++..++ .....+.|+|+||+++||+++++|+|+||+|
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~isl~i 475 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEV 475 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCCeeeecceEEE
Confidence 9999999999998765432110 000000 000010 0112467999999999987778999999999
Q ss_pred eCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecCCCCCCCcchHHHhccCCChhHHHH
Q 000647 1124 VPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAEL 1203 (1374)
Q Consensus 1124 ~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~ 1203 (1374)
++||+++|+||||||||||+++|.|+|+|.+|+|.+|+ |+++++|||+|++|++|+||||.||....+.
T Consensus 476 ~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~---------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~-- 544 (659)
T TIGR00954 476 PSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA---------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDM-- 544 (659)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC---------CCcEEEECCCCCCCCcCHHHHHhcCCChhhh--
Confidence 99999999999999999999999999999999998875 3679999999999999999999988542110
Q ss_pred HHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCChhhhhhhccccchhhHHhhhcccccc
Q 000647 1204 RALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISE 1283 (1374)
Q Consensus 1204 ~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~ 1283 (1374)
......+++++++++.+++.+++++ |.||||..+|+..||||||||++|
T Consensus 545 -------------~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~i----------------- 593 (659)
T TIGR00954 545 -------------KRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAM----------------- 593 (659)
T ss_pred -------------hccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHH-----------------
Confidence 0012346678899999999999887 899999988999999999999999
Q ss_pred hhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHhcCceEEEecCCCCchhhccceEEEEcC
Q 000647 1284 LDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1284 ~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
|||++++|+++|||||||+||+++++.+++.+++.|+|+|+|+||++++++||+++.| +|
T Consensus 594 -------------------ARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~d~il~l-~~ 653 (659)
T TIGR00954 594 -------------------ARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHEYLLYM-DG 653 (659)
T ss_pred -------------------HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhCCEEEEE-eC
Confidence 9999999999999999999999999999998877899999999999999999999999 79
Q ss_pred CCCeEE
Q 000647 1364 EGNWEL 1369 (1374)
Q Consensus 1364 ~g~~~~ 1369 (1374)
+|+|++
T Consensus 654 ~g~~~~ 659 (659)
T TIGR00954 654 RGGYQF 659 (659)
T ss_pred CCCccC
Confidence 999985
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=578.31 Aligned_cols=526 Identities=19% Similarity=0.239 Sum_probs=400.1
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAF-LRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1374)
Q Consensus 88 l~~Ll~i~~p~~~~~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~-~~~~~~f~~~l~~~~~~~~~~~~~~~~~~y 166 (1374)
+.++++.++++++ .+.-+++.+++-+.+++..|....-++|... +.+.+..+- ..+..++..++..+..+
T Consensus 142 ~~~f~~~~~~~~~-----~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~v----l~ig~~~~~l~~~~l~~ 212 (709)
T COG2274 142 LSWFIPLLFKYRR-----LLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTV----LAIGLLLAALFEALLRL 212 (709)
T ss_pred hHhHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHH----HHHHHHHHHHHHHHHHH
Confidence 4455566655544 2455666677788888888888888888655 333333221 12222233445677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccCCC-CCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000647 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1374)
Q Consensus 167 l~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~~-~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~ 245 (1374)
++..+.....+++...+..+++++..+.|++|+.++ .++...|+. |++.+.+.+..-+...+.-++..++|. .++.+
T Consensus 213 lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l-~vm~~ 290 (709)
T COG2274 213 LRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFL-AVMFL 290 (709)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 888888888888999999999999999999999865 567777765 667655555444433333222233333 23456
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 000647 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMR 325 (1374)
Q Consensus 246 ~~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~ 325 (1374)
++|.+++++++.+++..++..++.|++.+.+.++.+..++-...+.+...++|+||..+.|.+...+|++.|.+..+...
T Consensus 291 ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~ 370 (709)
T COG2274 291 YSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGF 370 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 78888888777777777777778899999888888877877777888888999999999999999999999998887655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 326 VVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLN 404 (1374)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 404 (1374)
+..+...+.+.+..++....... ++ |++..+ ..+..|+|....+. .+...+.+++.+++....+++
T Consensus 371 ~~~~~~~~~~~~~~~l~~l~~v~---iL----~~G~~lVl~~~lTlG~LiAf~------~l~~~f~~pi~~L~~~~~~~q 437 (709)
T COG2274 371 KTEKLALILNTIKSLLQQLSSVL---IL----WFGAILVLEGELTLGQLVAFN------MLAGYFISPITRLSQLWTDFQ 437 (709)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHhcCCcchHHHHHHH------HHHHHHHhHHHHHHHHHHHHH
Confidence 54444444444333332221111 11 122211 12334666533222 222344467778888888999
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCc
Q 000647 405 RLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSG 483 (1374)
Q Consensus 405 ~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsG 483 (1374)
+...+.+|+.++++.++|.+.+... ...+...+.|+|+||+|.|+.+ .++|+|+||+|++||+++|+|+||||
T Consensus 438 ~~~~~~~rL~dil~~~~E~~~~~~~------~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsG 511 (709)
T COG2274 438 QAKVALERLGDILDTPPEQEGDKTL------IHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSG 511 (709)
T ss_pred HHHHHHHHHHHHhcCCccccccccc------ccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCC
Confidence 9999999999999988765422110 0112235789999999999765 56999999999999999999999999
Q ss_pred hhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHH
Q 000647 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1374)
Q Consensus 484 KSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~ 557 (1374)
||||+|+|.|+|+|++|+|.+||.+ ..+|++|+||+|++.+|+||++|||.++.+. .+++++.++++.
T Consensus 512 KSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~------~~~e~i~~A~~~ 585 (709)
T COG2274 512 KSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE------ATDEEIIEAAQL 585 (709)
T ss_pred HHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCC------CCHHHHHHHHHH
Confidence 9999999999999999999999986 3578999999999999999999999998654 567899999999
Q ss_pred cCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhc--CCEEEEEc
Q 000647 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITIS 632 (1374)
Q Consensus 558 ~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~~--~~TiI~vt 632 (1374)
.++++++.++|.++++ +.|.+||||||||++|||||+++|+|+||||||||||+++|+.+++.+.+. |+|+|+||
T Consensus 586 ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~Ia 665 (709)
T COG2274 586 AGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIA 665 (709)
T ss_pred hCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEE
Confidence 9999999999998876 568899999999999999999999999999999999999999999999874 69999999
Q ss_pred cChhhHhhccEEEEecC
Q 000647 633 HRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 633 H~~~~~~~~d~il~l~~ 649 (1374)
||+++++.||+|++|++
T Consensus 666 HRl~ti~~adrIiVl~~ 682 (709)
T COG2274 666 HRLSTIRSADRIIVLDQ 682 (709)
T ss_pred ccchHhhhccEEEEccC
Confidence 99999999999999986
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-59 Score=583.83 Aligned_cols=529 Identities=19% Similarity=0.201 Sum_probs=380.8
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHH----HHH
Q 000647 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLST----MHS 162 (1374)
Q Consensus 87 ~l~~Ll~i~~p~~~~~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~----~~~ 162 (1374)
.++++++...|.|. ++++.++..+++-.....++.+.+.++++....+.+...+....|.++.++..+ ++.
T Consensus 651 s~~~i~k~~~pe~~-----~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~ 725 (1228)
T KOG0055|consen 651 SFWRIFKLNKPEWP-----YLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNF 725 (1228)
T ss_pred cHHHHHHhccchhH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888544 466677778888888889999999999999877765544332223333333333 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCC--CCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 163 TSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR--ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240 (1374)
Q Consensus 163 ~~~yl~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~~--~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~ 240 (1374)
+..|+-...+. +||.|+|.+-|+++.++++.|||+. .+....|++.|...+...+.+-+..++..+... +...
T Consensus 726 ~q~~~f~~~ge----~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~-~~~i 800 (1228)
T KOG0055|consen 726 LQHYFFGIAGE----KLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAV-IIGI 800 (1228)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 45555555555 6999999999999999999999852 256678999999888777666655555544322 2233
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHH
Q 000647 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKAL 320 (1374)
Q Consensus 241 ~l~~~~~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~ 320 (1374)
.++++++|.+++++++.+++..+......+.+.+...+..+...+.........+|+.+|+.|+.|++..+.+.+..+..
T Consensus 801 iiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p 880 (1228)
T KOG0055|consen 801 IIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKP 880 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34446677777777666665544433334444444444444444455555666677888999999998775444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 321 TRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSIS 399 (1374)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 399 (1374)
. +...++.++.++...+-..++....++.+ |+++.+. .+..++... + ..+..+.....+++.....
T Consensus 881 ~---~~~~~~~~i~gl~f~~sqs~~~~~~A~~f----~~G~~Li~~g~~~~~~~--~----~vf~~l~~ta~~~~~~~s~ 947 (1228)
T KOG0055|consen 881 R---KSSFKRGLISGLGFGFSQSLLFFVYALSF----WYGARLISNGEMTFEDV--F----RVFMALSFTAMALGQASSY 947 (1228)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHhcCCcCHHHH--H----HHHHHHHHHHHHHHHHHhh
Confidence 2 22334444444433221111111111111 2222221 122233221 1 1112222233456666677
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCC--CeeeeeeeEEEeCCCEEEEE
Q 000647 400 SRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLIT 477 (1374)
Q Consensus 400 ~~~l~~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~--~~~l~~isl~i~~Ge~~~Iv 477 (1374)
...+.+...++.++++++++++.++.+++ .......-.+.|+++||+|.||.. .++++|+||+|++|+.+|||
T Consensus 948 ~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~-----~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALV 1022 (1228)
T KOG0055|consen 948 APDISKAKIAAGSIFEILDRKPTIDPDST-----SGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALV 1022 (1228)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCCCC-----CCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEE
Confidence 77888999999999999998876543210 111111225779999999999964 57999999999999999999
Q ss_pred cCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHH
Q 000647 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551 (1374)
Q Consensus 478 G~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~ 551 (1374)
|||||||||.+.+|.++|+|++|.|.+||.+ +.+|++|+.|.|+|.||++||||||+||.. ..+.+++
T Consensus 1023 G~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~------~vs~~eI 1096 (1228)
T KOG0055|consen 1023 GPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE------EVSEEEI 1096 (1228)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC------CCCHHHH
Confidence 9999999999999999999999999999976 357899999999999999999999999922 2678899
Q ss_pred HHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCC
Q 000647 552 VELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGT 626 (1374)
Q Consensus 552 ~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~ 626 (1374)
.++++.++.++++..+|.+++| +.|.+||||||||||||||+++||+||||||+|||||.++|+.+.++|.+ .|+
T Consensus 1097 i~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gR 1176 (1228)
T KOG0055|consen 1097 IEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGR 1176 (1228)
T ss_pred HHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCC
Confidence 9999999999999999998887 45789999999999999999999999999999999999999999999986 599
Q ss_pred EEEEEccChhhHhhccEEEEecC
Q 000647 627 SCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 627 TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
|+|+|+||++++++||.|.++++
T Consensus 1177 T~IvIAHRLSTIqnaD~I~Vi~~ 1199 (1228)
T KOG0055|consen 1177 TTIVIAHRLSTIQNADVIAVLKN 1199 (1228)
T ss_pred cEEEEecchhhhhcCCEEEEEEC
Confidence 99999999999999999999986
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-58 Score=582.00 Aligned_cols=533 Identities=15% Similarity=0.172 Sum_probs=382.1
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFL--RRVPLFFQLISENILLCFLLSTMHSTSK 165 (1374)
Q Consensus 88 l~~Ll~i~~p~~~~~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~--~~~~~f~~~l~~~~~~~~~~~~~~~~~~ 165 (1374)
+++|++.+.|+++ . ++..+++.++...+.+..|.+.+.++|.+.. .+...++. ++++.++..++..+..
T Consensus 10 ~~~l~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 80 (588)
T PRK11174 10 TRWLKQQSKPAKR----W-LNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLP----PFILLILLFVLRALLA 80 (588)
T ss_pred hHHHHHHhHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH----HHHHHHHHHHHHHHHH
Confidence 4556667766544 2 5556666778888888999999999998763 22222222 2222223334455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCC-CCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1374)
Q Consensus 166 yl~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~~-~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 244 (1374)
|+...+..+....+..+++.+.+++....+..++++. .++..+|+++|++.+.+.+...+..++..++..+... .++.
T Consensus 81 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~ 159 (588)
T PRK11174 81 WLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLIL-IAVF 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 7777777777777888999999999998888887654 5689999999999988887766666555544333322 2334
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 000647 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1374)
Q Consensus 245 ~~~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~ 324 (1374)
+++|.+++++++.+++..++..++++...+...+.++..+++........++.+.||.|++|+.+.+++.+..++..+..
T Consensus 160 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK11174 160 PINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRT 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 56787776666555555555556677776666666666677766677777789999999999999988877777666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTS--TLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1374)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 402 (1374)
.+..+.......+..++. .+... .++++...++.|.+..+.. +++....+ ....+...++.++..+......
T Consensus 240 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~g~~t~G~l~~~~~~~~~~----~~~~l~~~~~~pl~~l~~~~~~ 313 (588)
T PRK11174 240 MEVLRMAFLSSAVLEFFA-SISIA-LVAVYFGFSYLGELNFGHYGTGVTLFAGF----FVLILAPEFYQPLRDLGTFYHA 313 (588)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHhcccccccccccchHHHHH----HHHHHhHHHHHHHHHHHHHHHH
Confidence 443333222222211111 11110 1101111111233322210 11100101 1112223455677777788888
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCC
Q 000647 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGS 482 (1374)
Q Consensus 403 l~~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGs 482 (1374)
+.+...+.+|+.++++.+++... +.. .. ......+.|+|+||+|.|++++++|+|+||+|++||+++|+|||||
T Consensus 314 ~~~~~~~~~ri~~~l~~~~~~~~-~~~----~~-~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGs 387 (588)
T PRK11174 314 KAQAVGAAESLVTFLETPLAHPQ-QGE----KE-LASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGA 387 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCcccC-CCc----cc-cCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCC
Confidence 99999999999999876542210 000 00 0001134699999998776678899999999999999999999999
Q ss_pred chhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHH
Q 000647 483 GKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556 (1374)
Q Consensus 483 GKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~ 556 (1374)
|||||+++|+|++ |++|+|.+||.+ .+++++|+||||+|++|++||+|||.++.+ ..+++++.++++
T Consensus 388 GKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~------~~~~eei~~al~ 460 (588)
T PRK11174 388 GKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP------DASDEQLQQALE 460 (588)
T ss_pred CHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC------CCCHHHHHHHHH
Confidence 9999999999999 899999999965 346789999999999999999999999853 257889999999
Q ss_pred HcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEE
Q 000647 557 NVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITI 631 (1374)
Q Consensus 557 ~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~v 631 (1374)
.++++++++++|.+.++ +.|.+|||||||||+||||++++|+++|||||||+||+++++.+.+.+++ .++|+|+|
T Consensus 461 ~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiI 540 (588)
T PRK11174 461 NAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMV 540 (588)
T ss_pred HhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999999987766 46789999999999999999999999999999999999999999998876 48999999
Q ss_pred ccChhhHhhccEEEEecC
Q 000647 632 SHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 632 tH~~~~~~~~d~il~l~~ 649 (1374)
|||++.++.+|+|+++++
T Consensus 541 tHrl~~i~~aD~Iivl~~ 558 (588)
T PRK11174 541 THQLEDLAQWDQIWVMQD 558 (588)
T ss_pred ecChHHHHhCCEEEEEeC
Confidence 999999999999999986
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=566.42 Aligned_cols=198 Identities=32% Similarity=0.403 Sum_probs=164.8
Q ss_pred cEEEeeeEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCC----ccEEEeCCCC------c-
Q 000647 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV----SGHIAKPGVG------S- 509 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~---~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~----~G~I~~~g~~------~- 509 (1374)
.++++|+++.|... ..+++|+||+|.+||+++|+|.|||||||+.++|.|+.++. +|+|.++|.+ .
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 68999999877542 36999999999999999999999999999999999999987 8999999964 1
Q ss_pred --c-ccccEEEEecCCCC---CcCCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCChhHHhc--CCCCccccCCCCCC
Q 000647 510 --D-LNKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDR--YPPEKEINWGDELS 580 (1374)
Q Consensus 510 --~-~~~~i~~v~Q~p~l---~~~Tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~--~~~~~~~~~g~~LS 580 (1374)
. ..++|+|+||+|.- +..||.++|.-....... ......+++.++|+.++|.+-..+ +| ++||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP--------heLS 156 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP--------HQLS 156 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC--------cccC
Confidence 1 23689999999952 335888888642211110 012234567889999999876554 77 6899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 581 LGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 581 gGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||||||+.||+||+.+|++||+||||++||+.++.+|.+.+++ .|+++|+||||+..+. .||++++|.+
T Consensus 157 GG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~ 230 (539)
T COG1123 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYK 230 (539)
T ss_pred chHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEEC
Confidence 9999999999999999999999999999999999999988764 5999999999999986 6999999985
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-57 Score=586.17 Aligned_cols=534 Identities=19% Similarity=0.225 Sum_probs=391.7
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYI 167 (1374)
Q Consensus 88 l~~Ll~i~~p~~~~~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl 167 (1374)
++.+++.+.+.++ .++.++++.++...+++..|.+.+.++|.+........ +...++..++..++..+..|+
T Consensus 142 ~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~ 213 (710)
T TIGR03796 142 LRALWRRLRGSRG-----ALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDW---LRPLLLGMGLTALLQGVLTWL 213 (710)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544432 24455666777778888999999999998774433221 111222222333445667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccCCC-CCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000647 168 TGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA 246 (1374)
Q Consensus 168 ~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~~-~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~ 246 (1374)
+..+..+...++..+++.+++++....++++++++ .++..+|+++| +.+.+.+...+...+..++..+.+.+. +.++
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~ 291 (710)
T TIGR03796 214 QLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALL-MLLY 291 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 88888888888999999999999999999887654 56888999988 566666665555544444444433333 3356
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 000647 247 SPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1374)
Q Consensus 247 ~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~ 326 (1374)
+|.+++++++..++..++..++.++..+...+.++..+++.........+++.||.+++|+.+.+++++.+.+..+...+
T Consensus 292 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 371 (710)
T TIGR03796 292 DPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQE 371 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666655555566677777777777777777777777777788999999999999999999888877776555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRL 406 (1374)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 406 (1374)
..+...+...+..++.. +...+.+++....+..| ..+.|.. ++. ..++..++.++..+.....++...
T Consensus 372 ~~~~~~~~~~~~~~i~~-~~~~~il~~g~~~v~~g-----~lt~G~l--va~----~~l~~~~~~p~~~l~~~~~~~~~~ 439 (710)
T TIGR03796 372 LGVLTQILGVLPTLLTS-LNSALILVVGGLRVMEG-----QLTIGML--VAF----QSLMSSFLEPVNNLVGFGGTLQEL 439 (710)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-----CCCHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333333333221 11111111111111223 2355543 221 223344556777788888899999
Q ss_pred HHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCchh
Q 000647 407 SGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKS 485 (1374)
Q Consensus 407 ~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~isl~i~~Ge~~~IvG~sGsGKS 485 (1374)
..+.+|+.++++.+++....................+.|+++||+|.|++ ++++|+|+||+|++||+++|+||||||||
T Consensus 440 ~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKS 519 (710)
T TIGR03796 440 EGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKS 519 (710)
T ss_pred HHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHH
Confidence 99999999998765443211000000000000112357999999999986 46899999999999999999999999999
Q ss_pred HHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcC
Q 000647 486 SLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD 559 (1374)
Q Consensus 486 TLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~ 559 (1374)
||+++|+|+|+|++|+|.+||.+ .+++++|+||||+|++|++|++|||.++.+ ..+++++.++++.++
T Consensus 520 TLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~------~~~~~~i~~al~~~~ 593 (710)
T TIGR03796 520 TIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP------TIPDADLVRACKDAA 593 (710)
T ss_pred HHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCC------CCCHHHHHHHHHHhC
Confidence 99999999999999999999976 347889999999999999999999998643 257889999999999
Q ss_pred ChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEccChh
Q 000647 560 LEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPA 636 (1374)
Q Consensus 560 L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~~~~TiI~vtH~~~ 636 (1374)
++++++++|.+.++ +.|.+|||||||||+|||||+++|+++|||||||+||+++|+++++.+++.++|+|+||||++
T Consensus 594 l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~ 673 (710)
T TIGR03796 594 IHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLS 673 (710)
T ss_pred CHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 99999999987665 568899999999999999999999999999999999999999999999888999999999999
Q ss_pred hHhhccEEEEecC
Q 000647 637 LVAFHDVVLSLDG 649 (1374)
Q Consensus 637 ~~~~~d~il~l~~ 649 (1374)
.++.+|+|++|++
T Consensus 674 ~i~~~D~Iivl~~ 686 (710)
T TIGR03796 674 TIRDCDEIIVLER 686 (710)
T ss_pred HHHhCCEEEEEeC
Confidence 9999999999986
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-57 Score=583.49 Aligned_cols=529 Identities=17% Similarity=0.180 Sum_probs=390.9
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYI 167 (1374)
Q Consensus 88 l~~Ll~i~~p~~~~~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl 167 (1374)
++++++.+.+.++ .++.++++.++.+.+++..|.+.+.++|.+....... .+....+..++..++..+..|+
T Consensus 144 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~ 215 (708)
T TIGR01193 144 LLKFIPLITRQKK-----LIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMG---TLGIISIGLIIAYIIQQILSYI 215 (708)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554333 2455566677788888999999999999876443221 1111222222233445667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccCCC-CCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000647 168 TGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA 246 (1374)
Q Consensus 168 ~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~~-~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~ 246 (1374)
...+..++..++..+++.+++++....++.+++++ .++..+|++ |++.+.+.+...+...+..++..+++... +.++
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~ 293 (708)
T TIGR01193 216 QIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLF-LVRQ 293 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 88888888888999999999999999999988764 568889998 88887776665554444333333333222 3356
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 000647 247 SPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1374)
Q Consensus 247 ~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~ 326 (1374)
+|.+++++++.+++..++..++.++..+...+.++..+++...+....+++++||.+++|+.+.+++++.+.+..+...+
T Consensus 294 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 373 (708)
T TIGR01193 294 NMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFK 373 (708)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666665555666778888888877778888887777777789999999999999999999888877765554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRL 406 (1374)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 406 (1374)
..+.......+..++. .+..++.+++....++.| ..+.|.. ++. ..+...++.++..+.....+++..
T Consensus 374 ~~~~~~~~~~~~~~~~-~~~~i~il~~g~~lv~~g-----~ls~G~l--va~----~~l~~~~~~pl~~l~~~~~~~~~~ 441 (708)
T TIGR01193 374 YQKADQGQQAIKAVTK-LILNVVILWTGAYLVMRG-----KLTLGQL--ITF----NALLSYFLTPLENIINLQPKLQAA 441 (708)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC-----CCCHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333322222222221 111111111111111223 3355543 222 223344556777888888899999
Q ss_pred HHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhH
Q 000647 407 SGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 486 (1374)
Q Consensus 407 ~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKST 486 (1374)
..+.+|+.++++.+++...... . .......+.|+++||+|.|++++++|+|+||+|++||+++|+|||||||||
T Consensus 442 ~~~~~ri~~~l~~~~e~~~~~~-~-----~~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKST 515 (708)
T TIGR01193 442 RVANNRLNEVYLVDSEFINKKK-R-----TELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKST 515 (708)
T ss_pred HHHHHHHHHHHcCCCccccccc-c-----cCCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHH
Confidence 9999999999876554321100 0 001112457999999999987778999999999999999999999999999
Q ss_pred HHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCC
Q 000647 487 LFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL 560 (1374)
Q Consensus 487 Ll~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L 560 (1374)
|+++|+|+|+|++|+|.+||.+ .+++++|+||||+|++|++||+|||.++... ..+++++.++++.+++
T Consensus 516 LlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~-----~~~~~~i~~a~~~a~l 590 (708)
T TIGR01193 516 LAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE-----NVSQDEIWAACEIAEI 590 (708)
T ss_pred HHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCC-----CCCHHHHHHHHHHhCC
Confidence 9999999999999999999975 3578899999999999999999999997321 2578899999999999
Q ss_pred hhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-cCCEEEEEccChh
Q 000647 561 EYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA-MGTSCITISHRPA 636 (1374)
Q Consensus 561 ~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~-~~~TiI~vtH~~~ 636 (1374)
+++++++|.+.++ +.|.+||||||||++||||++++|+++|||||||+||+++++++++.+++ .++|+|+||||++
T Consensus 591 ~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~ 670 (708)
T TIGR01193 591 KDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLS 670 (708)
T ss_pred HHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchH
Confidence 9999999987665 56889999999999999999999999999999999999999999998876 4799999999999
Q ss_pred hHhhccEEEEecC
Q 000647 637 LVAFHDVVLSLDG 649 (1374)
Q Consensus 637 ~~~~~d~il~l~~ 649 (1374)
.++.+|+|+++++
T Consensus 671 ~~~~~D~i~~l~~ 683 (708)
T TIGR01193 671 VAKQSDKIIVLDH 683 (708)
T ss_pred HHHcCCEEEEEEC
Confidence 9999999999986
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-57 Score=562.86 Aligned_cols=503 Identities=19% Similarity=0.184 Sum_probs=354.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTR 186 (1374)
Q Consensus 107 l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l~~~ 186 (1374)
++..+++.++.+.+.+..|.+.+.++|.+...+. .+. . ...++..++..++..+..|+...+..+...++..+++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 91 (529)
T TIGR02868 15 LVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLY-L-SVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVR 91 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677778888899999999988764432 111 1 111111112233455667777777777777888899999
Q ss_pred HhhccccccccccCC-CCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 000647 187 YFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMM 265 (1374)
Q Consensus 187 yl~~~~~y~~~~~d~-~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~i~ 265 (1374)
.+++....+..++++ ..++..+|+++|++.+.+.+...+..++..++..+.+.. ++.+++|.+++++++.+++...+.
T Consensus 92 ~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~l~l~~l~~~~~~~~~~ 170 (529)
T TIGR02868 92 VYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVA-AIALLSVPAALVLAAGLLLAGFVA 170 (529)
T ss_pred HHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999988887765 457999999999999888877766665555544333322 233567777766555444444444
Q ss_pred HHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 266 RNFSPAF-GKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKY 344 (1374)
Q Consensus 266 ~~~~~~l-~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1374)
.++.++. .+...+.++..+++........++.+.|+.|+.|+.+.+++++..++..+...+..+.......+..++. .
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 249 (529)
T TIGR02868 171 PLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAA-G 249 (529)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3444443 3334445556666777777777789999999999999988777766655544333222221111111111 0
Q ss_pred HHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 000647 345 LGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELS 424 (1374)
Q Consensus 345 ~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~~ 424 (1374)
+...+.+++....+..| ..+.|.. ++.+ .+...++.++..+......+.....+.+|+.++++.+++..
T Consensus 250 ~~~~~~~~~g~~~~~~g-----~~t~g~l--~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (529)
T TIGR02868 250 LAVLGALWAGGPAVADG-----TLAPATL--AVLV----LLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRP 318 (529)
T ss_pred HHHHHHHHHHHHHHhCC-----CCChhHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcC
Confidence 11111111111111222 2344432 2211 12233445566666667788888999999999987654322
Q ss_pred ccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEe
Q 000647 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504 (1374)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~ 504 (1374)
..+.. ......+..+.|+++||+|.|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 319 ~~~~~----~~~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 394 (529)
T TIGR02868 319 EGVVP----AAGALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTL 394 (529)
T ss_pred CCCCC----CCcccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 11100 00001112346999999999987678999999999999999999999999999999999999999999999
Q ss_pred CCCC-----ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCC
Q 000647 505 PGVG-----SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWG 576 (1374)
Q Consensus 505 ~g~~-----~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g 576 (1374)
||.+ .+++++|+||||+|++|++||+|||.++.+ +.+++++.++++.++++++++++|.+.++ ++|
T Consensus 395 ~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~------~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 468 (529)
T TIGR02868 395 DGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRP------DATDEELWAALERVGLADWLRSLPDGLDTVLGEGG 468 (529)
T ss_pred CCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCC------CCCHHHHHHHHHHcCCHHHHHhCcccccchhcccc
Confidence 9975 246679999999999999999999999853 25788999999999999999999987766 568
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccCh
Q 000647 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRP 635 (1374)
Q Consensus 577 ~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~ 635 (1374)
.+||||||||++||||++++|+++|||||||+||+++|+.+++.+++ .++|+|+||||+
T Consensus 469 ~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 469 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 89999999999999999999999999999999999999999999876 489999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-59 Score=583.50 Aligned_cols=198 Identities=24% Similarity=0.313 Sum_probs=166.7
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC--CccEEEeCCCCc-------cccc
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--VSGHIAKPGVGS-------DLNK 513 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~--~~G~I~~~g~~~-------~~~~ 513 (1374)
..|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+. ..++
T Consensus 4 ~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 4 YLLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred ceEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 3689999999985 56899999999999999999999999999999999999996 899999998541 1246
Q ss_pred cEEEEecCCCCCc-CCHHHHhcCCCCCC--cc-cCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHH
Q 000647 514 EIFYVPQRPYTAV-GTLRDQLIYPLTSD--QE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1374)
Q Consensus 514 ~i~~v~Q~p~l~~-~Tv~eni~~~~~~~--~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1374)
.++||||+|.++. .|++||+.++.... .. ......+++.++++.+++.+..++.+ .+||||||||++|
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGqkqrv~l 154 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV--------GNLGLGQQQLVEI 154 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch--------hhCCHHHHHHHHH
Confidence 7999999998765 59999998874321 00 00112345778899999987666654 5899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 590 ARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||||+.+|+++||||||++||+.....+.+.+++ .|+|+|+|||+++.+. .||+++++++
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~ 218 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRD 218 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999887754 4899999999999875 6999999975
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=576.11 Aligned_cols=510 Identities=20% Similarity=0.197 Sum_probs=381.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFL-RRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHT 185 (1374)
Q Consensus 107 l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~-~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l~~ 185 (1374)
++.++++.++...+++..|...+.++|.+.. ++...++. .++..++..++..+..|++..+..+....+..+++.
T Consensus 138 ~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 213 (686)
T TIGR03797 138 LLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQ----IALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQA 213 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667788888999999999999998763 33333222 222222233445566777777777777788899999
Q ss_pred HHhhccccccccccCCC-CCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 000647 186 RYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTM 264 (1374)
Q Consensus 186 ~yl~~~~~y~~~~~d~~-~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~i 264 (1374)
+++++....++.+++++ .++..+|++ |++.+.+.+...+...+..++..+++.+ ++.+++|.+++++++..++..++
T Consensus 214 ~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~l~li~l~~~~~~~~~ 291 (686)
T TIGR03797 214 AVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLG-LMFYYSWKLALVAVALALVAIAV 291 (686)
T ss_pred HHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887664 468889997 7887777666554444333333333222 23356777776665555555555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 265 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKY 344 (1374)
Q Consensus 265 ~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1374)
..++.+++.+...+.++.+++..........++++||.++.|+.+..++++.+.+..+...+..+...+...+..++. .
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~ 370 (686)
T TIGR03797 292 TLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLP-V 370 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 566777777777777777777777778888899999999999999999998888877766655444433333333221 1
Q ss_pred HHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 000647 345 LGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELS 424 (1374)
Q Consensus 345 ~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~~ 424 (1374)
+... .+++...++ ...+..+.|... +. ..++..++.++..+.....+++....+.+|+.++++.+++..
T Consensus 371 ~~~~--~il~~g~~l---v~~g~ltiG~lv--a~----~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 439 (686)
T TIGR03797 371 LTSA--ALFAAAISL---LGGAGLSLGSFL--AF----NTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD 439 (686)
T ss_pred HHHH--HHHHHHHHH---HHcCCCCHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 1111 111111111 012233565432 21 123344556777888888899999999999999987654322
Q ss_pred ccCCCCCCCCCCCccCCCCcEEEeeeEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEE
Q 000647 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503 (1374)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~ 503 (1374)
. +. . ......+.|+++||+|.|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+|+|++|+|.
T Consensus 440 ~-~~-~------~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 511 (686)
T TIGR03797 440 E-AK-T------DPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511 (686)
T ss_pred c-Cc-C------CCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence 1 00 0 00112356999999999964 56899999999999999999999999999999999999999999999
Q ss_pred eCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---c
Q 000647 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---N 574 (1374)
Q Consensus 504 ~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~ 574 (1374)
+||.+ .+++++|+||||+|++|+||++|||.++.+ .+++++.++++.++++++++++|.+.++ +
T Consensus 512 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-------~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige 584 (686)
T TIGR03797 512 YDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-------LTLDEAWEAARMAGLAEDIRAMPMGMHTVISE 584 (686)
T ss_pred ECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-------CCHHHHHHHHHHcCcHHHHHhccccccccccC
Confidence 99975 346789999999999999999999999743 4678899999999999999999987766 5
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEccChhhHhhccEEEEecC
Q 000647 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 575 ~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
.|.+||||||||++||||++++|+++|||||||+||+++|+++++.+++.++|+|+||||++.++.+|+|++|++
T Consensus 585 ~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~ 659 (686)
T TIGR03797 585 GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDA 659 (686)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEEC
Confidence 688999999999999999999999999999999999999999999999888999999999999999999999986
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-56 Score=575.64 Aligned_cols=527 Identities=19% Similarity=0.212 Sum_probs=388.1
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFL-RRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1374)
Q Consensus 88 l~~Ll~i~~p~~~~~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~-~~~~~f~~~l~~~~~~~~~~~~~~~~~~y 166 (1374)
+.++++.+.+.++ .+...+++.++.+.+++..|...+.++|.+.. ++...++. ..+..++..++..+..|
T Consensus 135 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~ 205 (694)
T TIGR03375 135 KHWFWSTLKESWP-----LYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWV----LAIGVALAIVFDFVLKT 205 (694)
T ss_pred chHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHH----HHHHHHHHHHHHHHHHH
Confidence 3444555544433 24455666777778888999999999997663 33332222 22222223344566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000647 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA 246 (1374)
Q Consensus 167 l~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~ 246 (1374)
++..+..+....+..+++.+++++....++++.....++..+|+ +|++.+.+.+...+...+..++..+++... +.++
T Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~ 283 (694)
T TIGR03375 206 LRSYFLDVAGKKADLILSAKLFERVLGLRMEARPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLV-IAII 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHH
Confidence 77777777777888999999999999988887444567888998 799988877766554444443333333332 3456
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 000647 247 SPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1374)
Q Consensus 247 ~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~ 326 (1374)
+|.+++++++..++..++..++.+++.+...+..+.+++..........++++|+.|+.|+.+.+++++.+.+..+...+
T Consensus 284 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR03375 284 GGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLK 363 (694)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666665555666677888888777778888888777778889999999999999999998888877666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRL 406 (1374)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 406 (1374)
..+.......+..++.. +..+..+++....++.| ..+.|.. ++. ..++..++.++..+.....++...
T Consensus 364 ~~~~~~~~~~~~~~~~~-~~~~~il~~g~~~v~~g-----~ls~G~l--~a~----~~~~~~~~~p~~~l~~~~~~~~~~ 431 (694)
T TIGR03375 364 SRFLSNLATNFAQFIQQ-LVSVAIVVVGVYLISDG-----ELTMGGL--IAC----VMLSGRALAPLGQLAGLLTRYQQA 431 (694)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-----CCCHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333332222222211 11111111111111223 3355543 222 223344556777777788889999
Q ss_pred HHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchh
Q 000647 407 SGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKS 485 (1374)
Q Consensus 407 ~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKS 485 (1374)
..+.+|+.++++.+++....... .......+.|+++||+|.||++ +++|+|+||+|++||+++|+||||||||
T Consensus 432 ~~~~~ri~~il~~~~e~~~~~~~------~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKS 505 (694)
T TIGR03375 432 KTALQSLDELMQLPVERPEGTRF------LHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKS 505 (694)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCC------CCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHH
Confidence 99999999998765432211000 0001123579999999999854 6799999999999999999999999999
Q ss_pred HHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcC
Q 000647 486 SLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD 559 (1374)
Q Consensus 486 TLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~ 559 (1374)
||+++|+|+|+|++|+|.+||.+ .+++++|+||||+|++|++|++|||.++.+. .+++++.++++.++
T Consensus 506 TLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~------~~~~~i~~a~~~~~ 579 (694)
T TIGR03375 506 TLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPY------ADDEEILRAAELAG 579 (694)
T ss_pred HHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCC------CCHHHHHHHHHHcC
Confidence 99999999999999999999975 3567899999999999999999999997532 57889999999999
Q ss_pred ChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccC
Q 000647 560 LEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHR 634 (1374)
Q Consensus 560 L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~ 634 (1374)
++++++++|.+.++ ++|.+||||||||++||||++++|+++|||||||+||+++++.+++.+++ .++|+|+||||
T Consensus 580 l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHr 659 (694)
T TIGR03375 580 VTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHR 659 (694)
T ss_pred hHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 99999999987665 56889999999999999999999999999999999999999999999876 47999999999
Q ss_pred hhhHhhccEEEEecC
Q 000647 635 PALVAFHDVVLSLDG 649 (1374)
Q Consensus 635 ~~~~~~~d~il~l~~ 649 (1374)
++.++.||+|++|++
T Consensus 660 l~~~~~~D~iivl~~ 674 (694)
T TIGR03375 660 TSLLDLVDRIIVMDN 674 (694)
T ss_pred HHHHHhCCEEEEEeC
Confidence 999999999999986
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-56 Score=563.48 Aligned_cols=530 Identities=17% Similarity=0.206 Sum_probs=383.6
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSK 165 (1374)
Q Consensus 86 ~~l~~Ll~i~~p~~~~~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~ 165 (1374)
+.++++++.+.+.++ . ++..+++.++.....+..+.+.+.++|.+...+...+...+ .+..++..++..+..
T Consensus 11 ~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~ 82 (582)
T PRK11176 11 QTFRRLWPTIAPFKA----G-LIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWM---PLVVIGLMILRGITS 82 (582)
T ss_pred HHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHH---HHHHHHHHHHHHHHH
Confidence 334455555554322 2 33444555666667777888999999987754433332211 111222233344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC-CCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1374)
Q Consensus 166 yl~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~-~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 244 (1374)
|+...+..+....+...++.+++++....+..++++ ..++..+|+++|++.+.+.+...+..++..++..+.+... +.
T Consensus 83 ~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~ 161 (582)
T PRK11176 83 FISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIM-MF 161 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 666666666666677788888888888878776654 4568999999999998887777666666655544443322 33
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 000647 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1374)
Q Consensus 245 ~~~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~ 324 (1374)
+.+|.+++++++.+++..++..++.+++.+...+.++..+++.........+.++|+.|+.|+.+.+++++..++..+..
T Consensus 162 ~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~ 241 (582)
T PRK11176 162 YYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQG 241 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 45777766666555554555556777777777777777777777777777899999999999999998888888877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLN 404 (1374)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 404 (1374)
.+..+...+...+..++.. +.....+++.....+.| ..+.|...++ ..++..++.++..+......++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~~g~~~~~~g-----~is~g~~~~~------~~~~~~~~~pl~~l~~~~~~~~ 309 (582)
T PRK11176 242 MKMVSASSISDPIIQLIAS-LALAFVLYAASFPSVMD-----TLTAGTITVV------FSSMIALMRPLKSLTNVNAQFQ 309 (582)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-----CCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444333333332211 11111111111111223 2355543221 2233445567777778888899
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCc
Q 000647 405 RLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSG 483 (1374)
Q Consensus 405 ~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsG 483 (1374)
....+.+|+.++++.+++...... ...+..+.++++||+|.||++ +++|+|+||+|++||+++|+||||||
T Consensus 310 ~~~~~~~ri~~~~~~~~~~~~~~~--------~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsG 381 (582)
T PRK11176 310 RGMAACQTLFAILDLEQEKDEGKR--------VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSG 381 (582)
T ss_pred HHHHHHHHHHHHhcCCCcCCCCCc--------CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCC
Confidence 999999999998765433211000 001123469999999999864 68999999999999999999999999
Q ss_pred hhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHH
Q 000647 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1374)
Q Consensus 484 KSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~ 557 (1374)
||||+++|+|+++|++|+|.++|.+ .++++.|+||||+|++|++|++|||.++.+. ..++++++++++.
T Consensus 382 KSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~-----~~~~~~i~~al~~ 456 (582)
T PRK11176 382 KSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE-----QYSREQIEEAARM 456 (582)
T ss_pred HHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCC-----CCCHHHHHHHHHH
Confidence 9999999999999999999999975 2467889999999999999999999997532 2578899999999
Q ss_pred cCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEc
Q 000647 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITIS 632 (1374)
Q Consensus 558 ~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vt 632 (1374)
++++++++++|.+.++ +.|.+||||||||++||||++++|+++|||||||+||++++..+++.+++ .++|+|+||
T Consensus 457 ~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~Vt 536 (582)
T PRK11176 457 AYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIA 536 (582)
T ss_pred hCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 9999999999987665 56889999999999999999999999999999999999999999998876 479999999
Q ss_pred cChhhHhhccEEEEecC
Q 000647 633 HRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 633 H~~~~~~~~d~il~l~~ 649 (1374)
||++.++.+|+|+++++
T Consensus 537 Hr~~~~~~~D~Ii~l~~ 553 (582)
T PRK11176 537 HRLSTIEKADEILVVED 553 (582)
T ss_pred cchHHHHhCCEEEEEEC
Confidence 99999999999999986
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-59 Score=587.43 Aligned_cols=200 Identities=23% Similarity=0.295 Sum_probs=164.3
Q ss_pred CCcEEEeeeEEEcCC---CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC----------
Q 000647 442 ANYIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------- 508 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~---~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~---------- 508 (1374)
.+.|+++|+++.|++ +.++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 347999999999863 2479999999999999999999999999999999999999999999987631
Q ss_pred ------c---cc-cccEEEEecCC--CCCc-CCHHHHhcCCCCCC-cccCCCCHHHHHHHHHHcCCh---hHHhcCCCCc
Q 000647 509 ------S---DL-NKEIFYVPQRP--YTAV-GTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE---YLLDRYPPEK 571 (1374)
Q Consensus 509 ------~---~~-~~~i~~v~Q~p--~l~~-~Tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~L~---~~~~~~~~~~ 571 (1374)
. .+ +++|+||+|+| .++. .|+.||+.++.... ........+++.++++.++|. +..++.|
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~--- 166 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP--- 166 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC---
Confidence 0 11 24799999998 4544 69999998763211 100111235678899999995 3456665
Q ss_pred cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEE
Q 000647 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLS 646 (1374)
Q Consensus 572 ~~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~ 646 (1374)
.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.+++ .|+|+|+||||++.+ ..||+|++
T Consensus 167 -----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 167 -----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred -----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 68999999999999999999999999999999999999998887653 389999999999987 57999999
Q ss_pred ecC
Q 000647 647 LDG 649 (1374)
Q Consensus 647 l~~ 649 (1374)
|++
T Consensus 242 l~~ 244 (623)
T PRK10261 242 MYQ 244 (623)
T ss_pred eeC
Confidence 985
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-58 Score=577.11 Aligned_cols=197 Identities=24% Similarity=0.248 Sum_probs=166.1
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-c------ccccEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-D------LNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~-~------~~~~i~ 516 (1374)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+- . .++.++
T Consensus 5 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 5 YISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred eEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 689999999985 46799999999999999999999999999999999999999999999998541 1 235699
Q ss_pred EEecCCCCCc-CCHHHHhcCCCCCC----cc---cCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHH
Q 000647 517 YVPQRPYTAV-GTLRDQLIYPLTSD----QE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1374)
Q Consensus 517 ~v~Q~p~l~~-~Tv~eni~~~~~~~----~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1374)
||||++.++. .|++||+.++.... .. ......+++.++++.+++.+..++.+ .+||||||||++
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgG~~qrv~ 155 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV--------ANLSISHKQMLE 155 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch--------hhCCHHHHHHHH
Confidence 9999998766 59999998764211 00 00012345778899999987766655 689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 589 lARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||||+.+|+++||||||++||+.+...+++.+++ .|+|+|+|||+++.+. .||+++++++
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKD 220 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999887754 4899999999999875 7999999975
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=574.49 Aligned_cols=197 Identities=25% Similarity=0.352 Sum_probs=166.3
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc------c-ccccEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~------~-~~~~i~ 516 (1374)
.|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+. . .++.++
T Consensus 4 ~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 4 LLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred eEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 589999999985 46799999999999999999999999999999999999999999999998541 1 245799
Q ss_pred EEecCCCCCc-CCHHHHhcCCCCCCcc---c-CCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHH
Q 000647 517 YVPQRPYTAV-GTLRDQLIYPLTSDQE---V-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1374)
Q Consensus 517 ~v~Q~p~l~~-~Tv~eni~~~~~~~~~---~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalAR 591 (1374)
|+||+|.++. .|++||+.++...... . .....+++.++++.+++.+..++.+ .+||||||||++|||
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~ 154 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV--------GELSIGEQQMVEIAK 154 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch--------hhCCHHHHHHHHHHH
Confidence 9999987765 5999999986432100 0 0011245778899999987766655 589999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 592 al~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||+++|+++||||||++||+.+...+++.+++ .|+|+|+|||+++.+. .||++++|++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999877654 5889999999999875 7999999975
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-56 Score=559.44 Aligned_cols=514 Identities=19% Similarity=0.235 Sum_probs=387.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTR 186 (1374)
Q Consensus 107 l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l~~~ 186 (1374)
++..+++.++...+.+..+.+.+.+++......... .+....++.++..++..+..|+...+..+...++...++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~ 92 (571)
T TIGR02203 16 LVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRS---VLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVR 92 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566677778888888999999888766543222 12222222333344456677777777777777888889999
Q ss_pred HhhccccccccccCCC-CCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 000647 187 YFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMM 265 (1374)
Q Consensus 187 yl~~~~~y~~~~~d~~-~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~i~ 265 (1374)
++++....+.+++++. .++..+|+++|++.+.+.+...+..++..++..+.+.. ++.+.+|.+++++++..++..++.
T Consensus 93 l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~l~~i~l~~~~l~~~~~ 171 (571)
T TIGR02203 93 MFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFI-VLLYYSWQLTLIVVVMLPVLSILM 171 (571)
T ss_pred HHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9998888887777654 56889999999999988887776666655554444332 233567777777666666655566
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 266 RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYL 345 (1374)
Q Consensus 266 ~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1374)
.++.++..+...+.++.++++.........+.++|+.+++|+.+.+++++.+++..+...+..+.......+..++.. +
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 250 (571)
T TIGR02203 172 RRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIAS-L 250 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 677788877877888888888888888889999999999999999888888887776655544443333333332211 1
Q ss_pred HHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 000647 346 GATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSI 425 (1374)
Q Consensus 346 ~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~~~ 425 (1374)
...+.+++....+..|. .+.|....+ ..++..++.++..+......+.....+.+|+.++++.+++.+.
T Consensus 251 ~~~~~~~~g~~~~~~g~-----lt~g~l~a~------~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 319 (571)
T TIGR02203 251 ALAVVLFIALFQAQAGS-----LTAGDFTAF------ITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT 319 (571)
T ss_pred HHHHHHHHHHHHHHcCC-----CCHhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 11111111111122232 355543222 2234455677778888888999999999999998865443211
Q ss_pred cCCCCCCCCCCCccCCCCcEEEeeeEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEe
Q 000647 426 EDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504 (1374)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~ 504 (1374)
.. .. .....+.++++||+|+|++ ++++|+|+||++++||+++|+|+||||||||+++|+|+|+|++|+|.+
T Consensus 320 ~~------~~--~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i 391 (571)
T TIGR02203 320 GT------RA--IERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILL 391 (571)
T ss_pred CC------CC--CCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEE
Confidence 00 00 0112346999999999975 467999999999999999999999999999999999999999999999
Q ss_pred CCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cC
Q 000647 505 PGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NW 575 (1374)
Q Consensus 505 ~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~ 575 (1374)
+|.+ .+++++++||||+|++|++|++|||.++.+. +.+++++.++++.++++++++++|.+.++ ++
T Consensus 392 ~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~-----~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~ 466 (571)
T TIGR02203 392 DGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE-----QADRAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466 (571)
T ss_pred CCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCC-----CCCHHHHHHHHHHcChHHHHHhCcCcccceecCC
Confidence 9965 3467889999999999999999999998531 25788999999999999999999877655 57
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 576 g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
|.+||||||||++||||++++|++++||||||+||+++++.+++.+++ .++|+|+||||++.++.||+|+++++
T Consensus 467 g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~ 542 (571)
T TIGR02203 467 GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDD 542 (571)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeC
Confidence 889999999999999999999999999999999999999999998876 47999999999999999999999975
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-55 Score=558.06 Aligned_cols=532 Identities=17% Similarity=0.165 Sum_probs=375.9
Q ss_pred cccchHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cChhHHHHHHHHHHHHHHHHHH
Q 000647 81 KKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFL-RRVPLFFQLISENILLCFLLST 159 (1374)
Q Consensus 81 ~~~~~~~l~~Ll~i~~p~~~~~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~-~~~~~f~~~l~~~~~~~~~~~~ 159 (1374)
|++-||.++++++...++++ . ++..+++.++.+.+.+..|.+.+.++|.+.. .+.+. ..++.++++.++..+
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~--~~~~~~~~~~~~~~~ 76 (592)
T PRK10790 4 FSQLWPTLKRLLAYGSPWRK----P-LGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL--GLVAGLAAAYVGLQL 76 (592)
T ss_pred chhhHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch--hHHHHHHHHHHHHHH
Confidence 44445655666655544332 2 4455666778888888999999999998754 33222 111212222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCC-CCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 160 MHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLY 238 (1374)
Q Consensus 160 ~~~~~~yl~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~~-~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~ 238 (1374)
+..+..|+...+..+....+..+++.+++++....+.+++++. .++..+|+++|++.+.+.+...+..++..++..+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 156 (592)
T PRK10790 77 LAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAM 156 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777778888999999998888888777654 568889999999998887777666655554433332
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHH
Q 000647 239 TWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFK 318 (1374)
Q Consensus 239 ~~~l~~~~~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~ 318 (1374)
. .++.+++|.+++++++..++..++..+..+...+...+.++..+++........++.+.|+.|+.|+.+.+++.+..+
T Consensus 157 ~-~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~ 235 (592)
T PRK10790 157 L-VAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASR 235 (592)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHH
Confidence 2 223345666665554444333333333444444444444555556666667777789999999999998887777666
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 319 ALTRHMRVVLHDHW-WFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLS 397 (1374)
Q Consensus 319 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~ 397 (1374)
+..+...+..+... ....+..++...+ .++++++ .|....+..+.|.. ++. ..+...+..++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~g~is~g~l--~a~----~~~~~~~~~pl~~l~ 302 (592)
T PRK10790 236 SHYMARMQTLRLDGFLLRPLLSLFSALI--LCGLLML-----FGFSASGTIEVGVL--YAF----ISYLGRLNEPLIELT 302 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-----HHHHHCCCcCHHHH--HHH----HHHHHHHHHHHHHHH
Confidence 55443332222111 1111111111111 0111111 11111223345432 221 223344556777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEE
Q 000647 398 ISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 477 (1374)
Q Consensus 398 ~~~~~l~~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~Iv 477 (1374)
.....+.....+++|+.++++.+++.. ... ......+.++++||+|.||+++++|+|+||++++||+++|+
T Consensus 303 ~~~~~~~~~~~s~~ri~~~l~~~~~~~-~~~--------~~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIv 373 (592)
T PRK10790 303 TQQSMLQQAVVAGERVFELMDGPRQQY-GND--------DRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALV 373 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccC-CCC--------ccCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEE
Confidence 788899999999999999886543211 000 00112356999999999987678999999999999999999
Q ss_pred cCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHH
Q 000647 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551 (1374)
Q Consensus 478 G~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~ 551 (1374)
|+||||||||+++|+|+|+|++|+|.+||.+ ..++++|+||||+|++|++|++|||.++.. .+++++
T Consensus 374 G~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~-------~~d~~i 446 (592)
T PRK10790 374 GHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD-------ISEEQV 446 (592)
T ss_pred CCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCC-------CCHHHH
Confidence 9999999999999999999999999999975 356789999999999999999999999741 467899
Q ss_pred HHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCC
Q 000647 552 VELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGT 626 (1374)
Q Consensus 552 ~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~ 626 (1374)
.++++.++++++++++|.+.++ +.|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .++
T Consensus 447 ~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~ 526 (592)
T PRK10790 447 WQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHT 526 (592)
T ss_pred HHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999987665 45789999999999999999999999999999999999999999998876 479
Q ss_pred EEEEEccChhhHhhccEEEEecC
Q 000647 627 SCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 627 TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
|+|+||||++.++.+|+|++|++
T Consensus 527 tvIivtHr~~~l~~~D~ii~l~~ 549 (592)
T PRK10790 527 TLVVIAHRLSTIVEADTILVLHR 549 (592)
T ss_pred EEEEEecchHHHHhCCEEEEEEC
Confidence 99999999999999999999986
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=576.82 Aligned_cols=198 Identities=26% Similarity=0.378 Sum_probs=162.7
Q ss_pred cEEEeeeEEEcCC---CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCCc------
Q 000647 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS------ 509 (1374)
Q Consensus 444 ~i~~~~v~~~~~~---~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~~------ 509 (1374)
.++++|+++.|++ ++++++|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+-
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 6899999999964 25799999999999999999999999999999999999987 799999998641
Q ss_pred c---cc-ccEEEEecCCC--CC-cCCHHHHhcCCCCC-CcccCCCCHHHHHHHHHHcCChh---HHhcCCCCccccCCCC
Q 000647 510 D---LN-KEIFYVPQRPY--TA-VGTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDE 578 (1374)
Q Consensus 510 ~---~~-~~i~~v~Q~p~--l~-~~Tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~~~~~~g~~ 578 (1374)
+ .+ ++++|+||+|. ++ ..|+++|+.++... .........+++.++++.++|.+ ..++.+ .+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~--------~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP--------HQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC--------cc
Confidence 1 12 47999999985 33 35899998643210 00011112356788999999975 346655 68
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 579 LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .||+|++|++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~ 232 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQN 232 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999999999999888764 3899999999999875 7999999985
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=575.19 Aligned_cols=196 Identities=26% Similarity=0.320 Sum_probs=162.1
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCC--cCCccEEEeCC----------------
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPG---------------- 506 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~--~~~~G~I~~~g---------------- 506 (1374)
|+++|+++.|+ ++++++|+||++++||+++|+||||||||||+|+|+|+. +|++|+|.+++
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 46899999985 568999999999999999999999999999999999997 79999999862
Q ss_pred -------CC----------------ccccccEEEEecC-CCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCh
Q 000647 507 -------VG----------------SDLNKEIFYVPQR-PYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561 (1374)
Q Consensus 507 -------~~----------------~~~~~~i~~v~Q~-p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 561 (1374)
.+ ..+++.++|+||+ +.++. .|++||+.++...........++++.++++.++++
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 10 0124579999998 45554 59999998753211111111235678899999999
Q ss_pred hHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhh
Q 000647 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPAL 637 (1374)
Q Consensus 562 ~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~ 637 (1374)
+..++.+ .+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|+||||++.
T Consensus 160 ~~~~~~~--------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 231 (520)
T TIGR03269 160 HRITHIA--------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231 (520)
T ss_pred hhhhcCc--------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 8888766 68999999999999999999999999999999999999998776643 48999999999998
Q ss_pred Hh-hccEEEEecC
Q 000647 638 VA-FHDVVLSLDG 649 (1374)
Q Consensus 638 ~~-~~d~il~l~~ 649 (1374)
+. .||+++.|++
T Consensus 232 ~~~~~d~i~~l~~ 244 (520)
T TIGR03269 232 IEDLSDKAIWLEN 244 (520)
T ss_pred HHHhcCEEEEEeC
Confidence 85 7999999975
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-58 Score=571.15 Aligned_cols=197 Identities=21% Similarity=0.313 Sum_probs=166.3
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-------cccccEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~-------~~~~~i~ 516 (1374)
.++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .++++++
T Consensus 4 ~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 4 YLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 689999999985 46799999999999999999999999999999999999999999999988541 1356799
Q ss_pred EEecCCCCCc-CCHHHHhcCCCCCC--c-ccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000647 517 YVPQRPYTAV-GTLRDQLIYPLTSD--Q-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1374)
Q Consensus 517 ~v~Q~p~l~~-~Tv~eni~~~~~~~--~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1374)
|+||+|.++. .|++||+.++.... . .......+++.++++.+++.+..++.+ .+||||||||++||||
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~lara 154 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL--------KYLSIGQRQMVEIAKA 154 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch--------hhCCHHHHHHHHHHHH
Confidence 9999998776 49999999864211 0 000112346778899999876555544 5899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 593 l~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .||++++|++
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKD 215 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999887764 5899999999999874 6999999975
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-55 Score=556.89 Aligned_cols=528 Identities=17% Similarity=0.159 Sum_probs=367.5
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSK 165 (1374)
Q Consensus 86 ~~l~~Ll~i~~p~~~~~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~ 165 (1374)
+.++++++.+.+.+ ..+...+++.++...+++..|.+.+.++|.+.... .+...++.++++ .++..+..
T Consensus 5 ~~~~~l~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~--~~~~~~~~~~~~----~~~~~~~~ 73 (588)
T PRK13657 5 RLYARVLQYLGAEK-----RLGILLAVANVLLAAATFAEPILFGRIIDAISGKG--DIFPLLAAWAGF----GLFNIIAG 73 (588)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cHHHHHHHHHHH----HHHHHHHH
Confidence 34555655543322 23555666778888899999999999999877542 222222222221 12222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC-CCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1374)
Q Consensus 166 yl~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~-~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 244 (1374)
|+...+..+....+..+++.+++++....+..++++ ..++..+|+++|++.+.+.....+...+..++..++.. .++.
T Consensus 74 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (588)
T PRK13657 74 VLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLL-PLAL 152 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 333333333333344444556677777777766654 45689999999999987776666666555544333222 2233
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 000647 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1374)
Q Consensus 245 ~~~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~ 324 (1374)
+.+|.+++++++.+++...+..++.+...+...+.++..+++........++.+.|+.|+.++.+.+++.+..+++.+..
T Consensus 153 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
T PRK13657 153 FMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQ 232 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 56776666655555444445555666666666666666677777777777789999999999999988888888777665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLN 404 (1374)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 404 (1374)
.+..+..........+.. .+.....+++....++.|. .+.|....+ ..++..++.++..+......+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~v~~g~-----lt~g~~~a~------~~l~~~~~~~l~~l~~~~~~~~ 300 (588)
T PRK13657 233 MPVLSWWALASVLNRAAS-TITMLAILVLGAALVQKGQ-----LRVGEVVAF------VGFATLLIGRLDQVVAFINQVF 300 (588)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCC-----cCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 544333333222222211 1111111111111122333 355543221 2233345556667777777788
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCch
Q 000647 405 RLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGK 484 (1374)
Q Consensus 405 ~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGK 484 (1374)
......+|+.++++.+++.+.... ........+.|+++||+|.||+++++|+|+||++++||+++|+|+|||||
T Consensus 301 ~~~~~~~~i~~l~~~~~~~~~~~~------~~~~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGK 374 (588)
T PRK13657 301 MAAPKLEEFFEVEDAVPDVRDPPG------AIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGK 374 (588)
T ss_pred HHHHHHHHHHHHhCCCcccCCCCC------CCCcCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCH
Confidence 888888888888765432210000 00001113469999999999866779999999999999999999999999
Q ss_pred hHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHc
Q 000647 485 SSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558 (1374)
Q Consensus 485 STLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~ 558 (1374)
|||+++|+|+|+|++|+|.+||.+ .+++++|+||||+|++|++|++|||.++.+ ..+++++.++++.+
T Consensus 375 STLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~------~~~d~~i~~al~~~ 448 (588)
T PRK13657 375 STLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP------DATDEEMRAAAERA 448 (588)
T ss_pred HHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC------CCCHHHHHHHHHHh
Confidence 999999999999999999999965 346789999999999999999999999743 24678899999999
Q ss_pred CChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEcc
Q 000647 559 DLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISH 633 (1374)
Q Consensus 559 ~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH 633 (1374)
+++++++++|.+.++ ++|.+||||||||++|||||+++|+++|||||||+||+++++.+++.+++ .++|+|+|||
T Consensus 449 ~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitH 528 (588)
T PRK13657 449 QAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAH 528 (588)
T ss_pred CHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEe
Confidence 999999999876655 46789999999999999999999999999999999999999999998875 4799999999
Q ss_pred ChhhHhhccEEEEecC
Q 000647 634 RPALVAFHDVVLSLDG 649 (1374)
Q Consensus 634 ~~~~~~~~d~il~l~~ 649 (1374)
|++.++.+|+|+++++
T Consensus 529 r~~~~~~~D~ii~l~~ 544 (588)
T PRK13657 529 RLSTVRNADRILVFDN 544 (588)
T ss_pred cHHHHHhCCEEEEEEC
Confidence 9999999999999976
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-55 Score=549.58 Aligned_cols=510 Identities=18% Similarity=0.202 Sum_probs=369.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAF-LR-RVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIH 184 (1374)
Q Consensus 107 l~~~~~l~~~~t~ls~~~~~~~~~~~~al~-~~-~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l~ 184 (1374)
++..+++.++...+++..|.+.+.++|.+. .. +...+.. ++++.++..++..+..|+...+..+....+..+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLP----ALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666678888899999999999999874 32 2222222 22223333344556677777777777777888999
Q ss_pred HHHhhccccccccccCC-CCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 000647 185 TRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGT 263 (1374)
Q Consensus 185 ~~yl~~~~~y~~~~~d~-~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~ 263 (1374)
.+.+++....+..++++ ..++..+|+++|++.+.+.+...+..++..++..+.+.. ++.+.+|.+++++++.+++...
T Consensus 81 ~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILA-AVFPADWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHH
Confidence 99999988888877765 456899999999999887776655555544443333222 2234566666555544444444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 264 MMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLK 343 (1374)
Q Consensus 264 i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1374)
+..++.++..+...+.++.++++........++.+.|+.|+.|+.+.+++++..++..+...+..+.....+....++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 238 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA- 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4455666666666666667777777777777889999999999999988887777666654443333333333222221
Q ss_pred HHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 000647 344 YLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL 423 (1374)
Q Consensus 344 ~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~ 423 (1374)
.+...+.+++.....+.| ..+.|.. +.. ..+...++.++..+......+.+...+.+|+.++++.+++.
T Consensus 239 ~~~~~~~~~~~~~~~~~g-----~~t~g~~--~~~----~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~ 307 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAG-----DLDLATG--LFV----LLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPL 307 (529)
T ss_pred HHHHHHHHHHHHHHHHcC-----CCCHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 111111111111111222 2355532 221 22333455666777777888999999999999998643221
Q ss_pred cccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEE
Q 000647 424 SIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502 (1374)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I 502 (1374)
. +.. . ......+.|+++||+|.||++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 308 ~--~~~-----~-~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I 379 (529)
T TIGR02857 308 A--GKA-----P-VTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379 (529)
T ss_pred C--CCc-----C-CCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 1 000 0 001112469999999999875 479999999999999999999999999999999999999999999
Q ss_pred EeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---
Q 000647 503 AKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI--- 573 (1374)
Q Consensus 503 ~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~--- 573 (1374)
.+||.+ .+++++++||||+|++|++|++|||.++.+. .+++++.++++.++++++++++|.+.++
T Consensus 380 ~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~------~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~ 453 (529)
T TIGR02857 380 AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPD------ASDAEIRRALERAGLDEFVAALPQGLDTLIG 453 (529)
T ss_pred EECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCC------CCHHHHHHHHHHcCcHHHHHhCcccccchhc
Confidence 999975 3467899999999999999999999997532 4678899999999999999999977665
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEe
Q 000647 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSL 647 (1374)
Q Consensus 574 ~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l 647 (1374)
++|.+||||||||++||||++++|+++|||||||+||+++++.+++.+++ .++|+|+||||++.++.+|+|++|
T Consensus 454 e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 454 EGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 46889999999999999999999999999999999999999999998876 589999999999999999999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-55 Score=550.74 Aligned_cols=528 Identities=19% Similarity=0.212 Sum_probs=376.7
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCh--hHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAF-LRRV--PLFFQLISENILLCFLLSTMHSTS 164 (1374)
Q Consensus 88 l~~Ll~i~~p~~~~~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~-~~~~--~~f~~~l~~~~~~~~~~~~~~~~~ 164 (1374)
++++++.+.|.++ .++..+++.++....++..+.+.+.++|... .... ..+.. ++ ..+.+++..++..+.
T Consensus 4 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~ 76 (574)
T PRK11160 4 LLPFLKLYKRHWF-----MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNY-ML-PAAGVRGAAIGRTAG 76 (574)
T ss_pred hHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH-Hh-HHHHHHHHHHHHHHH
Confidence 3445555555433 2455566677777888899999999999754 2221 11111 11 111222223345566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC-CCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1374)
Q Consensus 165 ~yl~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~-~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 243 (1374)
.|+...+..+.-..+..+++.+.+++....+..++++ ..++..+|+++|++.+.+.+...+..++..++..+... .++
T Consensus 77 ~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~-~~l 155 (574)
T PRK11160 77 RYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLT-IGL 155 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 7777777777777788899999999999888887765 45689999999999998888777776666555443332 233
Q ss_pred HhhhhhHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHH
Q 000647 244 SYASPKYVFWILAYVLGAGTMM-RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1374)
Q Consensus 244 ~~~~~~l~~~~l~~~~~~~~i~-~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~ 322 (1374)
.+++|.+++++++.+++...++ .++.+...+...+.++..+++.........+.+.|+.|+.|+.+.+++++..++..+
T Consensus 156 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~ 235 (574)
T PRK11160 156 SFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLA 235 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 4678877776654444333332 334455555666667777788777777777999999999999999888887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1374)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 402 (1374)
...+..+.......+..++. ...+..+++ +++....+..+.|.. ++.+.+. ....+..+..+......
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~----~g~~~~~g~~t~g~l--~a~~~~~---~~~~~~~~~~l~~~~~~ 303 (574)
T PRK11160 236 AQRRQANLTGLSQALMILAN---GLTVVLMLW----LAAGGVGGNAQPGAL--IALFVFA---ALAAFEALMPVAGAFQH 303 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHhccccchhHH--HHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 55544333322222222111 111111111 111111122344432 2211111 11223344555566778
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCC
Q 000647 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNG 481 (1374)
Q Consensus 403 l~~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sG 481 (1374)
+.+...+.+|+.++++.+++....... ......+.|+++||+|.||++ +++|+|+||++++||+++|+||||
T Consensus 304 ~~~~~~s~~ri~~ll~~~~~~~~~~~~-------~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sG 376 (574)
T PRK11160 304 LGQVIASARRINEITEQKPEVTFPTTS-------TAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTG 376 (574)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCccc-------CCCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCC
Confidence 888899999999998765432111000 001123569999999999864 679999999999999999999999
Q ss_pred CchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHH
Q 000647 482 SGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 555 (1374)
Q Consensus 482 sGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l 555 (1374)
||||||+++|+|+++|++|+|.+||.+ .+++++|+||||+|++|++|++|||.++.+ ..+++++.+++
T Consensus 377 sGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~------~~~~~~i~~al 450 (574)
T PRK11160 377 CGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP------NASDEALIEVL 450 (574)
T ss_pred CCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC------ccCHHHHHHHH
Confidence 999999999999999999999999975 246788999999999999999999999753 25778999999
Q ss_pred HHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEE
Q 000647 556 KNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCIT 630 (1374)
Q Consensus 556 ~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~ 630 (1374)
+.+++++++++ |.+.++ +.|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++ .++|+|+
T Consensus 451 ~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tvii 529 (574)
T PRK11160 451 QQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLM 529 (574)
T ss_pred HHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999 988776 46789999999999999999999999999999999999999999999875 4899999
Q ss_pred EccChhhHhhccEEEEecC
Q 000647 631 ISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 631 vtH~~~~~~~~d~il~l~~ 649 (1374)
||||++.++.+|+|+++++
T Consensus 530 itHr~~~~~~~d~i~~l~~ 548 (574)
T PRK11160 530 ITHRLTGLEQFDRICVMDN 548 (574)
T ss_pred EecChhHHHhCCEEEEEeC
Confidence 9999999999999999986
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-57 Score=562.95 Aligned_cols=191 Identities=21% Similarity=0.264 Sum_probs=162.1
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCccccccEEEEecCCCC
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 524 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~~~~~~i~~v~Q~p~l 524 (1374)
|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|. ..++|+||++.+
T Consensus 2 l~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----~~i~~~~q~~~~ 75 (530)
T PRK15064 2 LSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----ERLGKLRQDQFA 75 (530)
T ss_pred EEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----CEEEEEeccCCc
Confidence 78999999985 568999999999999999999999999999999999999999999999873 469999999877
Q ss_pred Cc-CCHHHHhcCCCCC-------------Cccc-------------------CCCCHHHHHHHHHHcCChhHHh-cCCCC
Q 000647 525 AV-GTLRDQLIYPLTS-------------DQEV-------------------EPLTHGGMVELLKNVDLEYLLD-RYPPE 570 (1374)
Q Consensus 525 ~~-~Tv~eni~~~~~~-------------~~~~-------------------~~~~~~~~~~~l~~~~L~~~~~-~~~~~ 570 (1374)
+. .|++||+.++... .... ....+.++.++++.+++.+... +.+
T Consensus 76 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-- 153 (530)
T PRK15064 76 FEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLM-- 153 (530)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCch--
Confidence 65 5999999875310 0000 0011345678888999876443 333
Q ss_pred ccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEccChhhHh-hccEEEEecC
Q 000647 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 571 ~~~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++.|.|||+|||+++.+. .||++++|++
T Consensus 154 ------~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~ 227 (530)
T PRK15064 154 ------SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDY 227 (530)
T ss_pred ------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeC
Confidence 589999999999999999999999999999999999999999999888999999999999875 6899999985
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-58 Score=568.94 Aligned_cols=196 Identities=23% Similarity=0.328 Sum_probs=162.5
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC--CccEEEeCCCCc-------cccccE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--VSGHIAKPGVGS-------DLNKEI 515 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~--~~G~I~~~g~~~-------~~~~~i 515 (1374)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+. ..++.+
T Consensus 2 l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 78999999985 46799999999999999999999999999999999999987 799999998541 123579
Q ss_pred EEEecCCCCCc-CCHHHHhcCCCCCCc----ccCCCCHHHHHHHHHHcCChhHH-hcCCCCccccCCCCCChhHHHHHHH
Q 000647 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDELSLGEQQRLGM 589 (1374)
Q Consensus 516 ~~v~Q~p~l~~-~Tv~eni~~~~~~~~----~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~~~~~~g~~LSgGqkQRlal 589 (1374)
+||||+|.++. .|++||+.++..... .......+++.++++.+++.+.. ++.+ .+||||||||++|
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv~i 152 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV--------GDYGGGQQQLVEI 152 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch--------hhCCHHHHHHHHH
Confidence 99999997765 599999988643110 00011234567889999987543 2323 5899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 590 ARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||||+++|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .||++++|++
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~ 216 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRD 216 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999887654 5899999999999875 6999999975
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-55 Score=550.00 Aligned_cols=509 Identities=23% Similarity=0.297 Sum_probs=372.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTR 186 (1374)
Q Consensus 107 l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l~~~ 186 (1374)
+...+++.++...+++..+.+.+.+++.+. .+...+.......+++.++..++.....|+...+. ..+...++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~lr~~ 90 (567)
T COG1132 16 LLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLG----QKIVADLRRD 90 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 445566667778889999999999999888 44444444444333333333334444445555554 5688889999
Q ss_pred HhhccccccccccCCCC-CChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 000647 187 YFENMAYYKISHVDGRI-THPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMM 265 (1374)
Q Consensus 187 yl~~~~~y~~~~~d~~~-~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~i~ 265 (1374)
.+++....+..++++.. ++..+|+++|++.+...+......+..+++..+. ...++...+|.+++++++..++..++.
T Consensus 91 ~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~l~~~~~~~~~~~~~ 169 (567)
T COG1132 91 LFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIG-SLVLLFSLSWRLALILLLILPLLALVL 169 (567)
T ss_pred HHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999988887654 7999999999999887777663333333332222 223334567777777666555556666
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 266 RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYL 345 (1374)
Q Consensus 266 ~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1374)
.++++...+...+.++..++.........++.+.|+.|+.|+.+.+++.+..++..+...+..+..........++ .
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 246 (567)
T COG1132 170 SLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL---S 246 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 6666655666666666667777667777778899999999999977666665555444332222222222111111 1
Q ss_pred HHHHHHHHhhhh--hhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 000647 346 GATVAVILIIEP--FFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL 423 (1374)
Q Consensus 346 ~~~~~~il~~~~--~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~ 423 (1374)
......++.... +..+. .+.|. ++. +..++...+.++..+......+.+...+++|+.++++.+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~-----~~~g~--~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 315 (567)
T COG1132 247 SLGTVLVLALGGFLVLSGS-----LTVGA--LAA----FILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEV 315 (567)
T ss_pred HHHHHHHHHHHHHHHHcCC-----CCHhH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 111111111111 11222 23443 222 233445566677788888888889999999999999875543
Q ss_pred cccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEE
Q 000647 424 SIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503 (1374)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~ 503 (1374)
...... .....+.|+|+||+|.|++++++++|+||++++||+++|+||||||||||+++|+|+|+|++|+|.
T Consensus 316 ~~~~~~--------~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~ 387 (567)
T COG1132 316 EDPPDP--------LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387 (567)
T ss_pred cCCCCC--------CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE
Confidence 211100 112245699999999998778999999999999999999999999999999999999999999999
Q ss_pred eCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---c
Q 000647 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---N 574 (1374)
Q Consensus 504 ~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~ 574 (1374)
+||.+ .++|++|+||||+|++|++||+|||.|+.+. .+++++.++++.+++++++.++|.+.++ +
T Consensus 388 idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~------at~eei~~a~k~a~~~d~I~~lp~g~dt~vge 461 (567)
T COG1132 388 IDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD------ATDEEIEEALKLANAHEFIANLPDGYDTIVGE 461 (567)
T ss_pred ECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC------CCHHHHHHHHHHhChHHHHHhCcccccceecC
Confidence 99875 3578999999999999999999999998653 5789999999999999999999977665 3
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 575 ~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
.|.+||||||||++||||++++|+++|||||||+||+++|+.+.+.+++ .++|+|+|+||++.++.+|+|+++++
T Consensus 462 ~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~ 538 (567)
T COG1132 462 RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDN 538 (567)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEEC
Confidence 5789999999999999999999999999999999999999999998864 57899999999999999999999986
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-56 Score=561.50 Aligned_cols=193 Identities=21% Similarity=0.331 Sum_probs=161.8
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCccccccEEEEecCC
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~~~~~~i~~v~Q~p 522 (1374)
..|+++|+++.|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ ..+++||||+|
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----~~~i~~v~Q~~ 79 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----GIKVGYLPQEP 79 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----CCEEEEEecCC
Confidence 3699999999996357899999999999999999999999999999999999999999999875 24799999999
Q ss_pred CCCc-CCHHHHhcCCCCCC--------------cccC----------------------CCCHHHHHHHHHHcCChhHHh
Q 000647 523 YTAV-GTLRDQLIYPLTSD--------------QEVE----------------------PLTHGGMVELLKNVDLEYLLD 565 (1374)
Q Consensus 523 ~l~~-~Tv~eni~~~~~~~--------------~~~~----------------------~~~~~~~~~~l~~~~L~~~~~ 565 (1374)
.++. .|+.||+.++.... .... ...+.++.++++.+++.. .+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~ 158 (556)
T PRK11819 80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WD 158 (556)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-cc
Confidence 8876 49999998753100 0000 001234566777777743 33
Q ss_pred cCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEccChhhHh-hccEE
Q 000647 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVV 644 (1374)
Q Consensus 566 ~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~~~~TiI~vtH~~~~~~-~~d~i 644 (1374)
+.+ .+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++.+.|+|+|||+++.+. .+|+|
T Consensus 159 ~~~--------~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 159 AKV--------TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred Cch--------hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeE
Confidence 333 589999999999999999999999999999999999999999999887789999999999885 68999
Q ss_pred EEecC
Q 000647 645 LSLDG 649 (1374)
Q Consensus 645 l~l~~ 649 (1374)
++|++
T Consensus 231 ~~l~~ 235 (556)
T PRK11819 231 LELDR 235 (556)
T ss_pred EEEeC
Confidence 99985
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-56 Score=556.09 Aligned_cols=258 Identities=22% Similarity=0.313 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCC-ccccccc
Q 000647 1040 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQ 1118 (1374)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~ 1118 (1374)
++....+..+.+...++.++..+.+|+.++.+.+++.+.+ ..+... +..+|+|+|+||+|+|+. ++++|+|
T Consensus 420 ~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~-----~~~~~~---~~~~g~I~~~nvsf~y~~~~~~vL~~ 491 (709)
T COG2274 420 GYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD-----KTLIHL---PKLQGEIEFENVSFRYGPDDPPVLED 491 (709)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-----cccccc---cccCceEEEEEEEEEeCCCCcchhhc
Confidence 3444566677788888899999999999998765432221 111122 224899999999998866 4789999
Q ss_pred ceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhccCC
Q 000647 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPL 1196 (1374)
Q Consensus 1119 ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~ 1196 (1374)
+||+|+|||+|||||+||||||||+++|.|+|+|.+|+|.+||.|+.++ +.+|++|++|||||+||+|||||||..+.
T Consensus 492 isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~ 571 (709)
T COG2274 492 LSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGN 571 (709)
T ss_pred eeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999998 57899999999999999999999998654
Q ss_pred ChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhHHh
Q 000647 1197 SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQL 1275 (1374)
Q Consensus 1197 ~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~~ 1275 (1374)
+ +..|+++.++++..+.++++.++|.||||.+ +.|.+|||||||||+|
T Consensus 572 p----------------------~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal--------- 620 (709)
T COG2274 572 P----------------------EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL--------- 620 (709)
T ss_pred C----------------------CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH---------
Confidence 3 2346677777778888889999999999998 5789999999999999
Q ss_pred hhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhh
Q 000647 1276 CSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPF 1353 (1374)
Q Consensus 1276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~~i~~ 1353 (1374)
||||++|||||||||||||||.++|+.+++.+.+ .|+|+|.||||+++++.
T Consensus 621 ---------------------------ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~ 673 (709)
T COG2274 621 ---------------------------ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS 673 (709)
T ss_pred ---------------------------HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh
Confidence 9999999999999999999999999998876554 47999999999999999
Q ss_pred ccceEEEEcC
Q 000647 1354 HSLELRLIDG 1363 (1374)
Q Consensus 1354 ~~~~l~l~~g 1363 (1374)
.|+++.+..|
T Consensus 674 adrIiVl~~G 683 (709)
T COG2274 674 ADRIIVLDQG 683 (709)
T ss_pred ccEEEEccCC
Confidence 9999999554
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-56 Score=571.11 Aligned_cols=463 Identities=21% Similarity=0.234 Sum_probs=310.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHHHHHHHH----Hhh
Q 000647 809 AASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVT----GMV 883 (1374)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~~~----~~~ 883 (1374)
++..++.....++..+...+...+++..++++.++.+ .||+..+ ..+..+|+++|++.+...+...+. .++
T Consensus 212 ~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~----~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~ 287 (711)
T TIGR00958 212 IASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENK----TGELTSRLSSDTQTMSRSLSLNVNVLLRNLV 287 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555666667777777777764 6776432 245789999999988765443222 222
Q ss_pred H---hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhcCCc
Q 000647 884 K---PSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGG 960 (1374)
Q Consensus 884 ~---~~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~~g~ 960 (1374)
. .++.+++++|+++++.. ..+.++.++. +...+...+...+.++..+.+.......-.+.+++..|+.+
T Consensus 288 ~~i~~~~~l~~~s~~l~l~~l----~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e 359 (711)
T TIGR00958 288 MLLGLLGFMLWLSPRLTMVTL----INLPLVFLAE----KVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAE 359 (711)
T ss_pred HHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhccc
Confidence 2 22334556777665531 1111111111 11112222333333333333333333344467889999877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhh--hcccchhhhhhhHHHHHHHHHHHH
Q 000647 961 AREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME--HKGDRALVSTQGELAHALRFLASV 1038 (1374)
Q Consensus 961 ~~e~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~--~~~~~~~~~~~~~~~~a~~~~a~~ 1038 (1374)
..|.+.+++..++..+................. +...+...+.++++.. ..+.. +.|.+...+ .+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~il~~g~~lv~~g~i----t~G~lva~~----~~ 426 (711)
T TIGR00958 360 EGEASRFKEALEETLQLNKRKALAYAGYLWTTS-----VLGMLIQVLVLYYGGQLVLTGKV----SSGNLVSFL----LY 426 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCC----CHHHHHHHH----HH
Confidence 766665555544444332211111111111111 1111111112222221 11211 223332222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCC--ccccc
Q 000647 1039 VSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS--QKLLA 1116 (1374)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~--~~~vL 1116 (1374)
..+....+..+.....++.+...+.+|++++.+..++.++ ... ...++ .+|.|+|+||+|.||+ ++++|
T Consensus 427 ~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~-----~~~-~~~~~---~~~~I~~~nVsf~Y~~~~~~~vL 497 (711)
T TIGR00958 427 QEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPL-----TGT-LAPLN---LEGLIEFQDVSFSYPNRPDVPVL 497 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-----CCC-CCCCC---CCCeEEEEEEEEECCCCCCCccc
Confidence 3345556667777788888888999999999765322111 010 01111 2578999999999997 36899
Q ss_pred ccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhcc
Q 000647 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIY 1194 (1374)
Q Consensus 1117 ~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~y 1194 (1374)
+|+||+|+|||+++||||||||||||+++|.|+|+|.+|+|.+||+|++++ +.+|++|++|||||++|+|||||||.|
T Consensus 498 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~ 577 (711)
T TIGR00958 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAY 577 (711)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhc
Confidence 999999999999999999999999999999999999999999999999988 467889999999999999999999998
Q ss_pred CCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhH
Q 000647 1195 PLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLI 1273 (1374)
Q Consensus 1195 p~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~ 1273 (1374)
+.+ +..|++++++++.++++++++++|+|+||.+ ++|.+|||||||||||
T Consensus 578 g~~----------------------~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlal------- 628 (711)
T TIGR00958 578 GLT----------------------DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAI------- 628 (711)
T ss_pred CCC----------------------CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHH-------
Confidence 853 1346778899999999999999999999997 4789999999999999
Q ss_pred HhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHhcCceEEEecCCCCchhh
Q 000647 1274 QLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPF 1353 (1374)
Q Consensus 1274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~~~~TvI~IaHRl~~i~~ 1353 (1374)
|||++|+|+|+||||||||||.++|+.+++.....++|+|+||||+++++.
T Consensus 629 -----------------------------ARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~ 679 (711)
T TIGR00958 629 -----------------------------ARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVER 679 (711)
T ss_pred -----------------------------HHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHh
Confidence 999999999999999999999999999988333468999999999999999
Q ss_pred ccceEEEEcC
Q 000647 1354 HSLELRLIDG 1363 (1374)
Q Consensus 1354 ~~~~l~l~~g 1363 (1374)
+|+++.|.+|
T Consensus 680 aD~IivL~~G 689 (711)
T TIGR00958 680 ADQILVLKKG 689 (711)
T ss_pred CCEEEEEECC
Confidence 9999999654
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-54 Score=547.75 Aligned_cols=515 Identities=20% Similarity=0.243 Sum_probs=374.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAF-LRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHT 185 (1374)
Q Consensus 107 l~~~~~l~~~~t~ls~~~~~~~~~~~~al~-~~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l~~ 185 (1374)
+...+++.++...+++..|...+.++|.+. +.+...+...+. +.++..++..+..|+...+..+....+..+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 95 (576)
T TIGR02204 20 VLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFA----FLLVVALVLALGTAARFYLVTWLGERVVADIRR 95 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677888888999999999999844 444333332222 122222233444555566666666667778888
Q ss_pred HHhhccccccccccCC-CCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 000647 186 RYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTM 264 (1374)
Q Consensus 186 ~yl~~~~~y~~~~~d~-~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~i 264 (1374)
..+++....+..++++ ..++..+|+++|++.+.+.+...+..++..++..+.+.. ++.+++|.+++++++..++..++
T Consensus 96 ~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~l~~~~ 174 (576)
T TIGR02204 96 AVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLI-MMFITSPKLTSLVLLAVPLVLLP 174 (576)
T ss_pred HHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHH
Confidence 8888877777776654 456888999999999877776666555444443333222 22345676666665555555555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 265 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKY 344 (1374)
Q Consensus 265 ~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1374)
..++.++..+...+.++.++++...+....++++.|+.++.|+.+..++++.+++..+...+..+...+......++. +
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 253 (576)
T TIGR02204 175 ILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLV-F 253 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 566777887888888888888888889999999999999999999988888888776665544333332222222111 1
Q ss_pred HHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 000647 345 LGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELS 424 (1374)
Q Consensus 345 ~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~~ 424 (1374)
+.....+++....++.|. .+.|....+ ..+...++.++..+.....++.....+.+|+.++++.+++..
T Consensus 254 ~~~~~~~~~g~~~v~~g~-----lt~g~~~~~------~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 322 (576)
T TIGR02204 254 GAIVGVLWVGAHDVIAGK-----MSAGTLGQF------VFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIK 322 (576)
T ss_pred HHHHHHHHHHHHHHHcCC-----CCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC
Confidence 111111111111122333 345532221 123334556777888888999999999999999987544321
Q ss_pred ccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCC--CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEE
Q 000647 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502 (1374)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~--~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I 502 (1374)
..... . ....+..+.|+++||+|.||++ +++|+|+||++++||+++|+||||||||||+++|+|+|+|++|+|
T Consensus 323 ~~~~~-~----~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I 397 (576)
T TIGR02204 323 APAHP-K----TLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397 (576)
T ss_pred CCCCC-c----cCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 11000 0 0001113469999999999853 679999999999999999999999999999999999999999999
Q ss_pred EeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---
Q 000647 503 AKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI--- 573 (1374)
Q Consensus 503 ~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~--- 573 (1374)
.+||.+ .+++++|+|+||+|++|++|++|||.++.+. .+++++.++++.+++.++++++|.+.++
T Consensus 398 ~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~------~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~ 471 (576)
T TIGR02204 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPD------ATDEEVEAAARAAHAHEFISALPEGYDTYLG 471 (576)
T ss_pred EECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCC------CCHHHHHHHHHHcCcHHHHHhCCCCCCceeC
Confidence 999964 3466789999999999999999999997532 3578899999999999999999876554
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 574 ~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
++|.+||||||||++||||++++|+++|||||||+||+++++.+++.+++ .++|+|+||||++.++.+|+++++++
T Consensus 472 ~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~ 549 (576)
T TIGR02204 472 ERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQ 549 (576)
T ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEEC
Confidence 56889999999999999999999999999999999999999999998876 48999999999999999999999986
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-57 Score=560.03 Aligned_cols=194 Identities=22% Similarity=0.373 Sum_probs=167.5
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc------c-ccccE
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEI 515 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~------~-~~~~i 515 (1374)
..++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. + .+..+
T Consensus 10 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 10 PLLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred ceEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 3699999999995 46799999999999999999999999999999999999999999999998531 1 12469
Q ss_pred EEEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 516 ~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
+|+||++.++. .|++||+.++.... ....+++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKR----QASMQKMKQLLAALGCQLDLDSSA--------GSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccc----hHHHHHHHHHHHHcCCCccccCCh--------hhCCHHHHHHHHHHHHHH
Confidence 99999998776 49999999864321 122456788999999987776655 589999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRD 215 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999888764 4899999999999874 7999999975
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-54 Score=541.25 Aligned_cols=526 Identities=15% Similarity=0.126 Sum_probs=376.8
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYI 167 (1374)
Q Consensus 88 l~~Ll~i~~p~~~~~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl 167 (1374)
++++++.+.|+++ .++..+++.++.+.+.+..|...+.++|.+..++. .... +++.++..++..+..|+
T Consensus 7 ~~~l~~~l~~~k~-----~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~ 75 (585)
T TIGR01192 7 YVRALSYLNVHKN-----RVLLIVIANITLAAITIAEPILFGRIIDAISSKSD--VLPT----LALWAGFGVFNTIAYVL 75 (585)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHH----HHHHHHHHHHHHHHHHH
Confidence 4556666655433 25556677788888999999999999998775432 1111 11111223344556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccCCC-CCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000647 168 TGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA 246 (1374)
Q Consensus 168 ~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~~-~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~ 246 (1374)
..++..+....+..+++.+.+++....++++++++ .++..+|+++|++.+.+.+...+...+..++..+++.+ .+.++
T Consensus 76 ~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~~ 154 (585)
T TIGR01192 76 VAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIP-TAFAM 154 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 66666666666777777888999998898887654 57899999999999887777776666555554433322 23356
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 000647 247 SPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1374)
Q Consensus 247 ~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~ 326 (1374)
+|.+++++++.+++...+..++.++..+...+.++..+++........+++++|+.|+.|+.+.+++++..++..+...+
T Consensus 155 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (585)
T TIGR01192 155 DWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYP 234 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 88777776665555555556666766666655566666666666667778999999999999998888887776655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRL 406 (1374)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 406 (1374)
..+.......+..++. .+...+.+++....+..| ..+.|.. ++. ..++..++.++..+......+...
T Consensus 235 ~~~~~~~~~~~~~~~~-~~~~~~v~~~g~~~v~~g-----~it~g~l--~a~----~~~~~~l~~~~~~l~~~~~~~~~~ 302 (585)
T TIGR01192 235 VLDWWALASGLNRMAS-TISMMCILVIGTVLVIKG-----ELSVGEV--IAF----IGFANLLIGRLDQMSGFITQIFEA 302 (585)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC-----CCCHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222222211111 111111111111111223 2345532 221 122334445666677777788888
Q ss_pred HHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhH
Q 000647 407 SGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 486 (1374)
Q Consensus 407 ~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKST 486 (1374)
....+|+.++++.+++....... .......+.++++||+|.|++++++++|+||++++||+++|+|||||||||
T Consensus 303 ~~~~~ri~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKST 376 (585)
T TIGR01192 303 RAKLEDFFDLEDSVFQREEPADA------PELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTT 376 (585)
T ss_pred HHHHHHHHHHHcCCccccCCccC------CCCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHH
Confidence 89999999987654332110000 000111346999999999987677999999999999999999999999999
Q ss_pred HHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCC
Q 000647 487 LFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL 560 (1374)
Q Consensus 487 Ll~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L 560 (1374)
|+++|+|+++|++|+|.++|.+ .++++.++||||+|++|++|++|||.++.+. .+++++.++++.+++
T Consensus 377 L~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~------~~~~~~~~a~~~~~~ 450 (585)
T TIGR01192 377 LINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG------ATDEEVYEAAKAAAA 450 (585)
T ss_pred HHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCC------CCHHHHHHHHHHhCc
Confidence 9999999999999999999864 2467889999999999999999999997432 467789999999999
Q ss_pred hhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccCh
Q 000647 561 EYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRP 635 (1374)
Q Consensus 561 ~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~ 635 (1374)
++++.++|.+.++ +.|.+||||||||++|||||+++|+++|||||||+||+++++.+++.+++ .++|+|+||||+
T Consensus 451 ~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~ 530 (585)
T TIGR01192 451 HDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRL 530 (585)
T ss_pred HHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCh
Confidence 9999988876554 56789999999999999999999999999999999999999999998875 489999999999
Q ss_pred hhHhhccEEEEecC
Q 000647 636 ALVAFHDVVLSLDG 649 (1374)
Q Consensus 636 ~~~~~~d~il~l~~ 649 (1374)
+.++.+|+|+++++
T Consensus 531 ~~~~~~d~i~~l~~ 544 (585)
T TIGR01192 531 STVRNADLVLFLDQ 544 (585)
T ss_pred HHHHcCCEEEEEEC
Confidence 99999999999986
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-57 Score=560.50 Aligned_cols=194 Identities=24% Similarity=0.301 Sum_probs=161.6
Q ss_pred EeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-------cccccEEEEe
Q 000647 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIFYVP 519 (1374)
Q Consensus 447 ~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~-------~~~~~i~~v~ 519 (1374)
++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ..++.++|+|
T Consensus 1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 368888885 46799999999999999999999999999999999999999999999998641 1246799999
Q ss_pred cCCCCCc-CCHHHHhcCCCCCC-cc--cCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000647 520 QRPYTAV-GTLRDQLIYPLTSD-QE--VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1374)
Q Consensus 520 Q~p~l~~-~Tv~eni~~~~~~~-~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1374)
|++.++. .|++||+.++.... .. ......+++.++++.+++.+..++.+ .+||||||||++|||||++
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV--------ATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch--------hhCCHHHHHHHHHHHHHHh
Confidence 9997665 59999998764211 10 00111245678889999876666544 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 596 ~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .||++++|++
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~ 209 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRD 209 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999887754 5899999999999875 7999999975
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-54 Score=500.74 Aligned_cols=526 Identities=20% Similarity=0.238 Sum_probs=372.0
Q ss_pred HHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 000647 92 AAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCF--LLSTMHSTSKYITG 169 (1374)
Q Consensus 92 l~i~~p~~~~~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~--~~~~~~~~~~yl~~ 169 (1374)
++.+.|+++ ++ +.+.+.+++.++....+..+=.+.|.|+.+-.-......+.. ++-.+. ...+...+.+|...
T Consensus 5 ~p~i~l~~~-~~-~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~---~~p~a~VR~~aI~Rt~~RY~ER 79 (573)
T COG4987 5 LPYLRLYKR-HK-FGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNV---MLPSAGVRGLAILRTAARYVER 79 (573)
T ss_pred hHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 366677666 22 334445555566666677888889999876543332211111 111111 12234577899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccC-CCCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000647 170 TLSLQFRKIVTKLIHTRYFENMAYYKISHVD-GRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASP 248 (1374)
Q Consensus 170 ~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d-~~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~ 248 (1374)
..+-.+--++..++|-+.|++..--...... -+.++.-.|+++||+.+.+.+...+.+.+.+++.+....+.+. ++++
T Consensus 80 lvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~-f~~~ 158 (573)
T COG4987 80 LVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLS-FFSI 158 (573)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHH-HhhH
Confidence 9999988889999999999887655443332 3567899999999999999999999887777665544444443 4677
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Q 000647 249 KYVFWILAYVLGAGTMMRNFSPAFGK-LMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVV 327 (1374)
Q Consensus 249 ~l~~~~l~~~~~~~~i~~~~~~~l~~-l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~ 327 (1374)
.+.+.+.++..+..+++.++....++ .+.+..+..+.+|...........+..+||.++..++.+++.-....+..++.
T Consensus 159 ~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~ 238 (573)
T COG4987 159 PLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQ 238 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666555555555555555544444 34455566667776554444455556899999998876665555544444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000647 328 LHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLS-ISSRRLNRL 406 (1374)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~l~~~ 406 (1374)
.+...+.+ ++..++...+... ...|+++....+..+. -...+. .-+++..+.++..+. .....+.+.
T Consensus 239 ~~~~~~~~----a~~~l~~g~~v~~--~l~w~a~~~~~G~~~~-~~aa~~-----ll~~f~~~eaf~~L~~~A~~~lgq~ 306 (573)
T COG4987 239 ARFTGLSD----AILLLIAGLLVIG--LLLWMAAQVGAGALAQ-PGAALA-----LLVIFAALEAFEPLAPGAFQHLGQV 306 (573)
T ss_pred HHHHHHHH----HHHHHHHHHHHHH--HHHHHHhcCcCCCcch-hHHHHH-----HHHHHHHHHHHhhhcchhHHHhhHH
Confidence 33332222 2222222111110 1112333332222111 011111 112234455555555 556788888
Q ss_pred HHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCCC-eeeeeeeEEEeCCCEEEEEcCCCCchh
Q 000647 407 SGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGN-VLVENLTLKVEPGSNLLITGPNGSGKS 485 (1374)
Q Consensus 407 ~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~-~~l~~isl~i~~Ge~~~IvG~sGsGKS 485 (1374)
..++.|+.++.+.+++...+++. .......++++||+|.||+.+ ++|+|+||++++||+++|+|+||||||
T Consensus 307 ~~Sa~Rl~~i~~q~~e~~~~~~~--------~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKS 378 (573)
T COG4987 307 IASARRLNDILDQKPEVTFPDEQ--------TATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKS 378 (573)
T ss_pred HHHHHHHhhhccCCcccCCCccc--------cCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHH
Confidence 89999999888766654322110 001112799999999999865 799999999999999999999999999
Q ss_pred HHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcC
Q 000647 486 SLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD 559 (1374)
Q Consensus 486 TLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~ 559 (1374)
||+++|.|.|+|++|+|..+|.+ +++++.|++++|++++|.+|+|||+....++ .+|+++.++++++|
T Consensus 379 TllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~------AsDEel~~aL~qvg 452 (573)
T COG4987 379 TLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPD------ASDEELWAALQQVG 452 (573)
T ss_pred HHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCC------CCHHHHHHHHHHcC
Confidence 99999999999999999999965 3467799999999999999999999997653 68999999999999
Q ss_pred ChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccC
Q 000647 560 LEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHR 634 (1374)
Q Consensus 560 L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~ 634 (1374)
|+++++..|.+.++ +-|..||||||||+||||+|+++.+++||||||.|||+.+|+++++.+.+ .|+|+|+||||
T Consensus 453 L~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHr 532 (573)
T COG4987 453 LEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHR 532 (573)
T ss_pred HHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecc
Confidence 99999999876554 56889999999999999999999999999999999999999999998876 59999999999
Q ss_pred hhhHhhccEEEEecC
Q 000647 635 PALVAFHDVVLSLDG 649 (1374)
Q Consensus 635 ~~~~~~~d~il~l~~ 649 (1374)
+..++.+|+|+++++
T Consensus 533 L~~le~~drIivl~~ 547 (573)
T COG4987 533 LRGLERMDRIIVLDN 547 (573)
T ss_pred cccHhhcCEEEEEEC
Confidence 999999999999986
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-56 Score=554.76 Aligned_cols=201 Identities=21% Similarity=0.331 Sum_probs=158.1
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCccccccEEEEecCCC
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~~~~~~i~~v~Q~p~ 523 (1374)
.++++|+++.|++++++++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ +..|+||||+|.
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----~~~i~~v~Q~~~ 78 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----GIKVGYLPQEPQ 78 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----CCEEEEEeccCC
Confidence 689999999996457899999999999999999999999999999999999999999999875 247999999998
Q ss_pred CCc-CCHHHHhcCCCCCC--------------cccCCC------CHHHHHHHHHHcCChh-------HHhcCCCCccccC
Q 000647 524 TAV-GTLRDQLIYPLTSD--------------QEVEPL------THGGMVELLKNVDLEY-------LLDRYPPEKEINW 575 (1374)
Q Consensus 524 l~~-~Tv~eni~~~~~~~--------------~~~~~~------~~~~~~~~l~~~~L~~-------~~~~~~~~~~~~~ 575 (1374)
++. .|++||+.++.... ...... ...++.++++.++..+ .++....+.....
T Consensus 79 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 158 (552)
T TIGR03719 79 LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDAD 158 (552)
T ss_pred CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCc
Confidence 875 59999998753210 000000 0122344444444322 1111111100112
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEccChhhHh-hccEEEEecC
Q 000647 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 576 g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
..+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++.+.|+|+|||+++.+. .||+++++++
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~ 233 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDR 233 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEEC
Confidence 3689999999999999999999999999999999999999999999887789999999999886 6899999975
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-54 Score=553.68 Aligned_cols=512 Identities=16% Similarity=0.178 Sum_probs=381.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAF-LRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHT 185 (1374)
Q Consensus 107 l~~~~~l~~~~t~ls~~~~~~~~~~~~al~-~~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l~~ 185 (1374)
+..++++.++.+.+++..|...+.++|.+. .++...++.. .+..++..++..+..|++..+..+...++..+++.
T Consensus 141 ~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 216 (694)
T TIGR01846 141 FREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVL----ALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGA 216 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677788888899999999999876 3343333221 22222233445566777877777778889999999
Q ss_pred HHhhccccccccccCCC-CCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 000647 186 RYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTM 264 (1374)
Q Consensus 186 ~yl~~~~~y~~~~~d~~-~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~i 264 (1374)
+++++....++.+++++ .++..+|+ +|++.+.+.+...+...+..++..+++.. ++.+++|.+++++++.+++..++
T Consensus 217 ~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~l~li~l~~~~~~~~i 294 (694)
T TIGR01846 217 RLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLA-VMFFYSPTLTGVVIGSLVCYALL 294 (694)
T ss_pred HHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888764 56888998 69999887776655554443333333332 33456887777666655555555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 265 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKY 344 (1374)
Q Consensus 265 ~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1374)
..++.+++.+...+.++..+++.........++++||.++.|+.+.+++.+.+.+..+...+..+..........++. .
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~ 373 (694)
T TIGR01846 295 SVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQ-K 373 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 666777777777666677777777777777899999999999999999988888776655554333333332222221 1
Q ss_pred HHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 000647 345 LGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELS 424 (1374)
Q Consensus 345 ~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~~ 424 (1374)
+..+..+++....+..| ..++|....+ ..+...++.++..+.....+++....+.+|+.++++.+++..
T Consensus 374 ~~~~~il~~g~~lv~~g-----~it~G~lia~------~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 442 (694)
T TIGR01846 374 LTFAILLWFGAHLVIGG-----ALSPGQLVAF------NMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPR 442 (694)
T ss_pred HHHHHhHHHHHHHHHcC-----CCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 11111111111111223 3356643221 223345566777888888899999999999999987654322
Q ss_pred ccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEE
Q 000647 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503 (1374)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~ 503 (1374)
... . .......+.|+++||+|.|+++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 443 ~~~-~------~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~ 515 (694)
T TIGR01846 443 SAG-L------AALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL 515 (694)
T ss_pred CCC-C------CCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 100 0 0001123579999999999754 6799999999999999999999999999999999999999999999
Q ss_pred eCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---c
Q 000647 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---N 574 (1374)
Q Consensus 504 ~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~ 574 (1374)
+||.+ .+++++|+||||+|++|++|++|||.++.+ ..+++++.++++.++++++++++|.+.++ +
T Consensus 516 idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~------~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 516 VDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP------GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred ECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC------CCCHHHHHHHHHHcChHHHHHhCcCccCcEecC
Confidence 99975 246789999999999999999999998643 24678999999999999999999987665 4
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 575 ~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
.|.+||||||||++||||++++|+++|||||||+||+++++.+++.+++ .++|+|+||||++.++.+|+|+++++
T Consensus 590 ~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~ 666 (694)
T TIGR01846 590 KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEK 666 (694)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeC
Confidence 5789999999999999999999999999999999999999999999876 47999999999999999999999986
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-56 Score=556.84 Aligned_cols=189 Identities=22% Similarity=0.252 Sum_probs=162.1
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~ 517 (1374)
.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ .+.++.++|
T Consensus 3 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLS-DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcC-CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 489999999996 4569999999999999999999999999999999999999999999988753 122356999
Q ss_pred EecCCCCC---------cCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHH
Q 000647 518 VPQRPYTA---------VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1374)
Q Consensus 518 v~Q~p~l~---------~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1374)
+||+|... ..|+++|+.++. ..++++.++++.+++.+..++.+ .+||||||||++
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~ 145 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV--------KDPARCEQLAQQFGITALLDRRF--------KYLSTGETRKTL 145 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch--------hHHHHHHHHHHHcCCHhhhhCCc--------ccCCHHHHHHHH
Confidence 99987531 347888876431 12456788999999998887766 689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 589 lARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||||+++|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .||++++|++
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~ 210 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLAD 210 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 99999999999999999999999999999888764 4889999999998875 6899999975
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-53 Score=498.86 Aligned_cols=510 Identities=17% Similarity=0.221 Sum_probs=376.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000647 111 VGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFEN 190 (1374)
Q Consensus 111 ~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l~~~yl~~ 190 (1374)
.++.++...+.+..+.+.....+.++.... +..+ +..++..++..++..+..|..++++-+.-..+...+|...|++
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~~--~~~l-~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQL--FQSL-LPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666677777777776654 2222 2233333334455677888888888888888888999999988
Q ss_pred cccccccccCCC-CCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 000647 191 MAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFS 269 (1374)
Q Consensus 191 ~~~y~~~~~d~~-~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~i~~~~~ 269 (1374)
.......+..+. .+...+.++|-|+.+...+..++...+.+.+.-++.. ...++.+|.-++++++.++++-+.+..++
T Consensus 83 l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~-i~v~~~~w~aalIllit~PlIPlfMilvg 161 (559)
T COG4988 83 LAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLIL-IAIFFFNWAAALILLITAPLIPLFMILVG 161 (559)
T ss_pred HHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776666554 4688899999999998888877766555443322211 11224566666666665555444444555
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 270 PAFGKLMSKEQQLEGEYR-QLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGAT 348 (1374)
Q Consensus 270 ~~l~~l~~~~q~~e~~~r-~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1374)
..-.+...++-+..+++. ..+.+++ +.+++++|+..+.+.+++.+.-.+..+...+..+..+..+.+.+++. +++.+
T Consensus 162 ~~a~~~s~~~~~~~~~ls~~FLD~Lr-GL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa-~lsiA 239 (559)
T COG4988 162 LAAKDASEKQFSALARLSGHFLDRLR-GLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFA-YLSIA 239 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 554444444444444444 3567777 68999999999999988887777777777777777777666666653 44444
Q ss_pred HHHHHhhhhhhc-ccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 000647 349 VAVILIIEPFFA-GNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIED 427 (1374)
Q Consensus 349 ~~~il~~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~~~~~ 427 (1374)
+..+.+...+.+ |. .++..+. .+.-.--..|.++-++...+|.-....++.+.+..+++.+.+.....
T Consensus 240 lvAv~~g~~ll~~G~-----ltl~~~l------~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~ 308 (559)
T COG4988 240 LVAVYIGFRLLGEGD-----LTLFAGL------FVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSG 308 (559)
T ss_pred HHHHHHHHHHHccCC-----ccHHHHH------HHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCc
Confidence 333333333333 32 2332211 11112235778999999999998888999999999887655432111
Q ss_pred CCCCCCCCCCccCCCCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCC
Q 000647 428 KSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV 507 (1374)
Q Consensus 428 ~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~ 507 (1374)
... .....+...++.+|+++.||+++++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.
T Consensus 309 ~~~-----~~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~ 383 (559)
T COG4988 309 EKA-----EVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGI 383 (559)
T ss_pred ccc-----ccccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCc
Confidence 000 000111234556699999999989999999999999999999999999999999999999999999999997
Q ss_pred C------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCC
Q 000647 508 G------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDE 578 (1374)
Q Consensus 508 ~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~ 578 (1374)
+ ..++++++||||+||+|.||+||||.++... .+++++.++++.+++.++++. |.+.++ +.|..
T Consensus 384 ~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~------~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~ 456 (559)
T COG4988 384 DLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPD------ASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAG 456 (559)
T ss_pred cccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCc------CCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCC
Confidence 5 3578999999999999999999999998653 578899999999999999998 776654 46789
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 579 LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
|||||+|||++||||+++++++|+||||++||.++|+.|.+.+.+ +++|+|+||||+..+..+|+|++||+
T Consensus 457 LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~ 529 (559)
T COG4988 457 LSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDN 529 (559)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecC
Confidence 999999999999999999999999999999999999999998875 58999999999999999999999986
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=544.16 Aligned_cols=450 Identities=19% Similarity=0.159 Sum_probs=290.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHHHHHHHH----HhhH-
Q 000647 811 SSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVT----GMVK- 884 (1374)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~~~----~~~~- 884 (1374)
..+..+...++..+...++..++..++++++++.+ .||+..+ ..+..+|++.|++.+...+...+. .++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~----~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 66 RAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQ----TGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCC----hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666777778888888888764 6765432 245689999999988765543222 2221
Q ss_pred --hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhcCCcHH
Q 000647 885 --PSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAR 962 (1374)
Q Consensus 885 --~~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~~g~~~ 962 (1374)
.++.+++..|.++++.. ..+.+++++...+.+...+ ....+.++..+.+.......-...+++..|+.+..
T Consensus 142 ~~~~~~l~~~~~~l~l~~l----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~ 214 (529)
T TIGR02868 142 SAAVAAIALLSVPAALVLA----AGLLLAGFVAPLVSLRAAR---AAEVALARLRSQLYQQLTDALDGAADLVAYGALDP 214 (529)
T ss_pred HHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHH
Confidence 22334556777766542 1111111111111111111 11111122222222222223335678888886655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhh--hcccchhhhhhhHHHHHHHHHHHHHH
Q 000647 963 EKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME--HKGDRALVSTQGELAHALRFLASVVS 1040 (1374)
Q Consensus 963 e~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~--~~~~~~~~~~~~~~~~a~~~~a~~~~ 1040 (1374)
+.+.+++..++..+... +..++.+....+ . .+...+...+.++++.. ..+.. +.|.+...+ ....
T Consensus 215 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~~g~~----t~g~l~~~~----~~~~ 281 (529)
T TIGR02868 215 ALAQVEAADRELLAAER---RAARATGLGAAA-Q-LLAAGLAVLGALWAGGPAVADGTL----APATLAVLV----LLPL 281 (529)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHhCCCC----ChhHHHHHH----HHHH
Confidence 55444443333322221 111111111110 0 11111111122222221 11111 122222211 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCCcccccccce
Q 000647 1041 QSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLT 1120 (1374)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~~ls 1120 (1374)
.....+..+......+.+...+.+|+.++.+..++.+.. ....+...++ ..+.|+|+||+|.||+++++|+|+|
T Consensus 282 ~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~~---~~~~I~~~~vsf~Y~~~~~vL~~is 355 (529)
T TIGR02868 282 AAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG---VVPAAGALGL---GKPTLELRDLSFGYPGSPPVLDGVS 355 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC---CCCCCcccCC---CCceEEEEEEEEecCCCCceeecce
Confidence 333445555566667778888999999987653221110 0000001112 2467999999999998778999999
Q ss_pred EEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc-cCCcccEEEecCCCCCCCcchHHHhccCCChh
Q 000647 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSRE 1199 (1374)
Q Consensus 1121 ~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~-~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~ 1199 (1374)
|+|+|||++|||||||||||||+++|.|+|+|++|+|.+||+|++++ +.+|++|+||||||+||+|||||||.|+.+
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~-- 433 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRP-- 433 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCC--
Confidence 99999999999999999999999999999999999999999999988 567889999999999999999999998743
Q ss_pred HHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhHHhhhc
Q 000647 1200 EAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQLCSI 1278 (1374)
Q Consensus 1200 e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~~~~~ 1278 (1374)
+.+|++++++++.++++++++++|+||||.+ ++|.+|||||||||||
T Consensus 434 --------------------~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiai------------ 481 (529)
T TIGR02868 434 --------------------DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLAL------------ 481 (529)
T ss_pred --------------------CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHH------------
Confidence 2357778999999999999999999999997 5789999999999999
Q ss_pred ccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCC
Q 000647 1279 NKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRP 1348 (1374)
Q Consensus 1279 ~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl 1348 (1374)
|||++++|+|+||||||||||.++|+.+++.++. .++|+|+||||+
T Consensus 482 ------------------------ARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 482 ------------------------ARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred ------------------------HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999887654 589999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=577.50 Aligned_cols=531 Identities=17% Similarity=0.176 Sum_probs=353.2
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1374)
Q Consensus 87 ~l~~Ll~i~~p~~~~~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~y 166 (1374)
++.++++.+.|+++. +++.++++++...+...+|.+.+.+++.+.... ........+.++.++.+++..+..|
T Consensus 812 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~l~~~~~~i~~~~~~~ 884 (1466)
T PTZ00265 812 NLRIVYREIFSYKKD-----VTIIALSILVAGGLYPVFALLYAKYVSTLFDFA--NLEANSNKYSLYILVIAIAMFISET 884 (1466)
T ss_pred hHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665442 444455566777788889999999988776421 1111111122222222222333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccCC---CCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG---RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1374)
Q Consensus 167 l~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~---~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 243 (1374)
+...+..+.-+.+..+++.+.|+++...++.|+|+ ..++..+|+++|++.+.+.+...+..++..++..+ +...++
T Consensus 885 l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i-~~~~~~ 963 (1466)
T PTZ00265 885 LKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFL-VSMVMS 963 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 44444444444578889999999999999999974 35688899999999988777665555444443322 222333
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHH-----------------HHHHHHHHHHHHHHHhHHHHHHhCC
Q 000647 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMS-KEQ-----------------QLEGEYRQLHSRLRTHAESIAFYGG 305 (1374)
Q Consensus 244 ~~~~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~-~~q-----------------~~e~~~r~~~~~ir~~~E~Ia~~~g 305 (1374)
++.+|.++++++..++ ++...+.+....... +.+ +..++..........++++|+.|+.
T Consensus 964 ~~~~~~l~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~ 1040 (1466)
T PTZ00265 964 FYFCPIVAAVLTGTYF---IFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGL 1040 (1466)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcc
Confidence 4556655444332221 122222222221111 111 1122333445555668889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHH
Q 000647 306 ENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTS 384 (1374)
Q Consensus 306 e~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~-~~~~~~g~~~~~~~~~~~~~ 384 (1374)
|+.+.+++.+..+...+...+.. ...++...+.........++++ ++++.+. .+..+.|.. +..+.
T Consensus 1041 e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~G~~lv~~g~it~g~l--~~~~~---- 1107 (1466)
T PTZ00265 1041 EDYFCNLIEKAIDYSNKGQKRKT---LVNSMLWGFSQSAQLFINSFAY----WFGSFLIRRGTILVDDF--MKSLF---- 1107 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCCCHHHH--HHHHH----
Confidence 99998777766655544333222 2222221111100001111111 1222211 223345532 22111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCC--CCeeee
Q 000647 385 VIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVE 462 (1374)
Q Consensus 385 ~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~--~~~~l~ 462 (1374)
.++.....++.+......+.....+++|+.++++.+++.+..+.... .........+.|+|+||+|.||+ ++++|+
T Consensus 1108 ~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~--~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~ 1185 (1466)
T PTZ00265 1108 TFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGI--RIKNKNDIKGKIEIMDVNFRYISRPNVPIYK 1185 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCccc--ccccCCCCCceEEEEEEEEECCCCCCCcccc
Confidence 11112233456666777888999999999999976543321110000 00000112356999999999985 357999
Q ss_pred eeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC---------------------------------------------
Q 000647 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--------------------------------------------- 497 (1374)
Q Consensus 463 ~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~--------------------------------------------- 497 (1374)
|+||+|++|++++||||||||||||+++|+|+|+|
T Consensus 1186 ~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 (1466)
T PTZ00265 1186 DLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGG 1265 (1466)
T ss_pred CeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999998
Q ss_pred ---------CccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChh
Q 000647 498 ---------VSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 562 (1374)
Q Consensus 498 ---------~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 562 (1374)
++|+|.+||.+ .++|++|+||||+|++|++||+|||.|+.+ ..++++++++++.+++++
T Consensus 1266 ~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~------~at~eeI~~A~k~A~l~~ 1339 (1466)
T PTZ00265 1266 SGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE------DATREDVKRACKFAAIDE 1339 (1466)
T ss_pred cccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC------CCCHHHHHHHHHHcCCHH
Confidence 69999999976 357899999999999999999999999853 257889999999999999
Q ss_pred HHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccCh
Q 000647 563 LLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRP 635 (1374)
Q Consensus 563 ~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~ 635 (1374)
++.++|.+.++ +.|.+|||||||||||||||+++|+|||||||||+||+++|+.+.+.+.+ .++|+|+||||+
T Consensus 1340 fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265 1340 FIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred HHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH
Confidence 99999988776 35789999999999999999999999999999999999999999998875 389999999999
Q ss_pred hhHhhccEEEEecC
Q 000647 636 ALVAFHDVVLSLDG 649 (1374)
Q Consensus 636 ~~~~~~d~il~l~~ 649 (1374)
+.++.+|+|++|++
T Consensus 1420 sti~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1420 ASIKRSDKIVVFNN 1433 (1466)
T ss_pred HHHHhCCEEEEEeC
Confidence 99999999999986
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=551.11 Aligned_cols=469 Identities=17% Similarity=0.203 Sum_probs=304.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHHHHH----HHHHh
Q 000647 808 SAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSG----LVTGM 882 (1374)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~----~~~~~ 882 (1374)
.++..++.+...++..+.+.++..++..++++++++.+ .||+..+ ..+..+|++.|++.+...+.. ++.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~----~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~ 148 (588)
T PRK11174 73 FVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKP----AGSWATLVLEQVEDMHDFYARYLPQMALAV 148 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCC----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444455555566667777777788888888888764 6665322 235689999999887654432 33333
Q ss_pred hH---hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhcCC
Q 000647 883 VK---PSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGG 959 (1374)
Q Consensus 883 ~~---~~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~~g 959 (1374)
+. .++.+++++|+++++.. ..++..+++...+.+.. .+...+..+..+.........-.+.+++..|+.
T Consensus 149 ~~~~~~~~~l~~~~~~l~l~~l----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~ 220 (588)
T PRK11174 149 LVPLLILIAVFPINWAAGLILL----GTAPLIPLFMALVGMGA----ADANRRNFLALARLSGHFLDRLRGLETLRLFNR 220 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcc
Confidence 22 23344567888776532 11111111111111111 111111111112221111222234678888887
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhhhcccchhhhhhhHH----HHHHHHH
Q 000647 960 GAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGEL----AHALRFL 1035 (1374)
Q Consensus 960 ~~~e~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~----~~a~~~~ 1035 (1374)
+..+.+.+++..++..+......+.......+..++. .+.. ..+.++++....+.. +.|.+ .....++
T Consensus 221 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~g~~----t~G~l~~~~~~~~~~~ 292 (588)
T PRK11174 221 GEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFA-SISI---ALVAVYFGFSYLGEL----NFGHYGTGVTLFAGFF 292 (588)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHhccc----ccccccccchHHHHHH
Confidence 6666555544444443332222211111111111111 0110 011111111111110 11211 1011111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCCccc
Q 000647 1036 -ASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKL 1114 (1374)
Q Consensus 1036 -a~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~ 1114 (1374)
.......+..+..+......+.+...+.+|+.++.+.+++.++ ....+ . +. ...++|+|+||+|+|+++++
T Consensus 293 ~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~-----~~~~~-~-~~-~~~~~i~~~~vsf~~~~~~~ 364 (588)
T PRK11174 293 VLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQ-----QGEKE-L-AS-NDPVTIEAEDLEILSPDGKT 364 (588)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC-----CCccc-c-CC-CCCceEEEEeeEEeccCCCe
Confidence 1222334455666666677778888899999998754321100 00000 0 10 11457999999987666678
Q ss_pred ccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHh
Q 000647 1115 LARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQI 1192 (1374)
Q Consensus 1115 vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl 1192 (1374)
||+|+||+|+|||++|||||||||||||+++|.|+| |.+|+|.+||+|++++ +.+|++|+||||||+||+|||||||
T Consensus 365 vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI 443 (588)
T PRK11174 365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNV 443 (588)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHh
Confidence 999999999999999999999999999999999999 8999999999999998 4778899999999999999999999
Q ss_pred ccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchh
Q 000647 1193 IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLV 1271 (1374)
Q Consensus 1193 ~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~ 1271 (1374)
.|+.+ +.+|++++++++.++++++++++|+||||.+ ++|.+|||||||||||
T Consensus 444 ~~g~~----------------------~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRial----- 496 (588)
T PRK11174 444 LLGNP----------------------DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLAL----- 496 (588)
T ss_pred hcCCC----------------------CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHH-----
Confidence 98742 2457788899999999999999999999997 4789999999999999
Q ss_pred hHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCC
Q 000647 1272 LIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPA 1349 (1374)
Q Consensus 1272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~ 1349 (1374)
||||+++|+||||||||||||.++|+.+++.+++ .++|+|+||||++
T Consensus 497 -------------------------------ARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~ 545 (588)
T PRK11174 497 -------------------------------ARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE 545 (588)
T ss_pred -------------------------------HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChH
Confidence 9999999999999999999999999998876654 5899999999999
Q ss_pred chhhccceEEEEcC
Q 000647 1350 LIPFHSLELRLIDG 1363 (1374)
Q Consensus 1350 ~i~~~~~~l~l~~g 1363 (1374)
+++..|+++.+.+|
T Consensus 546 ~i~~aD~Iivl~~G 559 (588)
T PRK11174 546 DLAQWDQIWVMQDG 559 (588)
T ss_pred HHHhCCEEEEEeCC
Confidence 99999999999665
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-55 Score=555.80 Aligned_cols=191 Identities=23% Similarity=0.288 Sum_probs=156.0
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCccccccEEEEecCCCC
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 524 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~~~~~~i~~v~Q~p~l 524 (1374)
|+++||++.|. ++++|+|+||+|++|++++|+||||||||||+|+|+|+.+|++|+|.++|. ..++|++|++..
T Consensus 2 i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~-----~~i~~~~q~~~~ 75 (638)
T PRK10636 2 IVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN-----WQLAWVNQETPA 75 (638)
T ss_pred EEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----CEEEEEecCCCC
Confidence 78999999994 578999999999999999999999999999999999999999999999873 258999997644
Q ss_pred CcCCHHHHhcCCCC---------------C------------CcccCCCCHHHHHHHHHHcCCh-hHHhcCCCCccccCC
Q 000647 525 AVGTLRDQLIYPLT---------------S------------DQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWG 576 (1374)
Q Consensus 525 ~~~Tv~eni~~~~~---------------~------------~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~~~~~g 576 (1374)
+..|+.+.+.-... . ........+.++.++++.+|+. +..++.+
T Consensus 76 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~-------- 147 (638)
T PRK10636 76 LPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV-------- 147 (638)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch--------
Confidence 44455544321100 0 0000011234677788888886 4555543
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEccChhhHh-hccEEEEecC
Q 000647 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 577 ~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
.+||||||||++|||||+.+|++|||||||++||+++...+.+.+++.+.|+|+||||..++. .||++++|++
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~ 221 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQ 221 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeC
Confidence 589999999999999999999999999999999999999999999888889999999999875 6899999985
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-53 Score=533.92 Aligned_cols=507 Identities=16% Similarity=0.168 Sum_probs=360.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 000647 115 VLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYY 194 (1374)
Q Consensus 115 ~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l~~~yl~~~~~y 194 (1374)
++...+.+..|.+.+.++|.+....... .. +..++++.++..++..+..|+...+..+...++..+++.+++++....
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 82 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTT-GQ-ILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQ 82 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcch-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4445566677888888888776442211 11 122222222333344556677777777777788889999999999998
Q ss_pred cccccCC-CCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 000647 195 KISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFG 273 (1374)
Q Consensus 195 ~~~~~d~-~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~i~~~~~~~l~ 273 (1374)
+.+++++ ..++..+|+++|++.+...+...+..++..++..+++.+.++.+++|.+++++++..++..++..++.++..
T Consensus 83 ~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 162 (569)
T PRK10789 83 HPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLH 162 (569)
T ss_pred CHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887754 457899999999999876655555555544333333323332356777766665555555555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 274 KLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVIL 353 (1374)
Q Consensus 274 ~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 353 (1374)
+...+.++..+++.........+++.||.|+.|+.+.+++.+..++..+...+..+............ .......++
T Consensus 163 ~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l 239 (569)
T PRK10789 163 ERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIA---IGMANLLAI 239 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 66666666666676666667778999999999999998887777665554443322222111111111 111111111
Q ss_pred hhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCC
Q 000647 354 IIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRN 433 (1374)
Q Consensus 354 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~ 433 (1374)
+...++ ...+..+.|.. ++.+ .+...++.++..+......+.....+.+|+.++++.+++.....
T Consensus 240 ~~g~~l---v~~g~lt~g~l--~a~~----~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~------ 304 (569)
T PRK10789 240 GGGSWM---VVNGSLTLGQL--TSFV----MYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS------ 304 (569)
T ss_pred HHHHHH---HHcCCcCHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC------
Confidence 111111 01122355542 2221 22233445666677777888999999999999987543321100
Q ss_pred CCCCccCCCCcEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC----
Q 000647 434 GSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---- 508 (1374)
Q Consensus 434 ~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~---- 508 (1374)
.......+.|+++|++|.|+++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 305 --~~~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~ 382 (569)
T PRK10789 305 --EPVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKL 382 (569)
T ss_pred --CCCCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhC
Confidence 0001123469999999999864 679999999999999999999999999999999999999999999999865
Q ss_pred --ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhH
Q 000647 509 --SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGE 583 (1374)
Q Consensus 509 --~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGq 583 (1374)
.+++++++|+||+|++|++|++|||.++.+. .+++++.++++.+++++++.++|.+.++ +.|.+|||||
T Consensus 383 ~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq 456 (569)
T PRK10789 383 QLDSWRSRLAVVSQTPFLFSDTVANNIALGRPD------ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQ 456 (569)
T ss_pred CHHHHHhheEEEccCCeeccccHHHHHhcCCCC------CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHH
Confidence 2457889999999999999999999987432 4678899999999999999999877654 4678999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 584 kQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
|||++||||++++|+++|||||||+||+++++.+.+.+++ .++|+|+||||++.++.+|+|+++++
T Consensus 457 ~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~ 524 (569)
T PRK10789 457 KQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQH 524 (569)
T ss_pred HHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeC
Confidence 9999999999999999999999999999999999998876 58999999999999999999999985
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=492.07 Aligned_cols=530 Identities=19% Similarity=0.208 Sum_probs=341.2
Q ss_pred hHHHHHHHHHHhccccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cChhHHH----HHHHHHHHHHHHHH
Q 000647 85 LKSLQVLAAILLSEMGKMGA-RDLLALVGIVVLRTALSNRLAKVQGFLFRAAFL-RRVPLFF----QLISENILLCFLLS 158 (1374)
Q Consensus 85 ~~~l~~Ll~i~~p~~~~~~~-~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~-~~~~~f~----~~l~~~~~~~~~~~ 158 (1374)
++-++.+.....|.-. ++. ..++.++++++..-++.+.+|..-+...|.+-+ ...+.-+ ..+..|.+.-+.+.
T Consensus 10 ~~~~~~l~~~~~~k~~-p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~ 88 (591)
T KOG0057|consen 10 LKILRSLVSYKWPKSR-PVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSS 88 (591)
T ss_pred hHHHHHHHhhheecCC-ceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHH
Confidence 5556666666666422 222 334556666777788999999999999998852 2233211 22233333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCC-CCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 159 TMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLL 237 (1374)
Q Consensus 159 ~~~~~~~yl~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~-~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~ 237 (1374)
+++-+..++-.+... ...++...+.|.+....+.+++.+ ..++....|..-...+...+...+..++..++.+.+
T Consensus 89 ~F~el~~~vfa~v~q----~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~ 164 (591)
T KOG0057|consen 89 VFNELRNFVFAKVAQ----RVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIAL 164 (591)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333 344444455555555555555533 355777777766666666666555555544443322
Q ss_pred HHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHH
Q 000647 238 YTWRLCSYASPKYVFWIL----AYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHI 313 (1374)
Q Consensus 238 ~~~~l~~~~~~~l~~~~l----~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l 313 (1374)
.+..+..-.++.+.++++ .|......+++|=.+.-.++ .+.+.+.....-....|-|.||.||-|+.|.+++
T Consensus 165 v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~----N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y 240 (591)
T KOG0057|consen 165 VSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAM----NNADNSASRRAYDSLINYEIVKSFNNEEYEASRY 240 (591)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHH----HhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHH
Confidence 222222223555554433 23222222233322222222 2333333332333344889999999999999766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 000647 314 QQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSL 393 (1374)
Q Consensus 314 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l 393 (1374)
.....+..+...+......+.++.|..++... .+...++. ..| +..+..+.|...++.. .+..+..++
T Consensus 241 ~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~-~~~im~l~----~~g-i~~~~mtvgdlv~~n~------l~~qL~~~l 308 (591)
T KOG0057|consen 241 DGSLKTYERAGLKYSSSLAFLNFGQKAIFSVA-LTFIMVLG----SNG-IAAGKMTVGDLVMVNS------LLFQLSLPL 308 (591)
T ss_pred HHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHH-HHHHHHHH----hhh-hhhccccccchhhHHH------HHHHHHhHH
Confidence 66655554433332222333344444332111 11111111 122 2222345555443322 233333455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCE
Q 000647 394 GTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSN 473 (1374)
Q Consensus 394 ~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~ 473 (1374)
..+...+.++.+...-...+....+...++. .. ........+.|+|+||+|+|++++++|+++||+|++||.
T Consensus 309 ~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~--~~------~~~i~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGek 380 (591)
T KOG0057|consen 309 NFLGSVYRELRQALTDMRTLFILLEVDEDIQ--EA------ALPIELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEK 380 (591)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhhhhhhh--hc------cCCcccCCCcEEEEeeEEEeCCCCceecceeEEecCCCE
Confidence 5666666666554433333322222111111 10 001112345799999999998888899999999999999
Q ss_pred EEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCC
Q 000647 474 LLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLT 547 (1374)
Q Consensus 474 ~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~ 547 (1374)
+||+|+|||||||++|+|.++++ ++|+|.+||++ ..+|+.||||||+..||++||..||.||... .+
T Consensus 381 VaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~s------as 453 (591)
T KOG0057|consen 381 VAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPS------AS 453 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCC------cC
Confidence 99999999999999999999999 99999999986 3578899999999999999999999999764 67
Q ss_pred HHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 000647 548 HGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA- 623 (1374)
Q Consensus 548 ~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~- 623 (1374)
++++.++++.+++++.+.++|.++.+ +.|..|||||||||+||||++++|+|+++|||||+||.++|..+.+.+.+
T Consensus 454 ~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~ 533 (591)
T KOG0057|consen 454 DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV 533 (591)
T ss_pred HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh
Confidence 89999999999999999999988776 56889999999999999999999999999999999999999999999876
Q ss_pred -cCCEEEEEccChhhHhhccEEEEecCC
Q 000647 624 -MGTSCITISHRPALVAFHDVVLSLDGE 650 (1374)
Q Consensus 624 -~~~TiI~vtH~~~~~~~~d~il~l~~~ 650 (1374)
.++|+|+|.||+++++.+|+|++++++
T Consensus 534 ~~~rTvI~IvH~l~ll~~~DkI~~l~nG 561 (591)
T KOG0057|consen 534 MSGRTVIMIVHRLDLLKDFDKIIVLDNG 561 (591)
T ss_pred cCCCeEEEEEecchhHhcCCEEEEEECC
Confidence 489999999999999999999999873
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-54 Score=542.54 Aligned_cols=256 Identities=25% Similarity=0.325 Sum_probs=220.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCCcccccccce
Q 000647 1041 QSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLT 1120 (1374)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~~ls 1120 (1374)
+.+..+..+......+.....+.+|++++.+.++...+. . .. .....|+|+|+||+|+||+++++|+|+|
T Consensus 280 ~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~------~-~~---~~~~~~~I~f~~vsf~y~~~~~vl~~is 349 (567)
T COG1132 280 RLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDP------P-DP---LKDTIGSIEFENVSFSYPGKKPVLKDIS 349 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC------C-CC---CCCCCCeEEEEEEEEEcCCCCccccCce
Confidence 444455566666666777788999999988653221110 0 00 1123688999999999998889999999
Q ss_pred EEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhccCCCh
Q 000647 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSR 1198 (1374)
Q Consensus 1121 ~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~ 1198 (1374)
|+|+|||++||||||||||||++++|.|||||.+|+|.+||+||+++ +.+|++|++|||||+||+|||||||.|+.+
T Consensus 350 ~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~- 428 (567)
T COG1132 350 FSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP- 428 (567)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCC-
Confidence 99999999999999999999999999999999999999999999999 578999999999999999999999998854
Q ss_pred hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccc-cccCCChhhhhhhccccchhhHHhhh
Q 000647 1199 EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WEDILSLGEQQRLGMVSHLVLIQLCS 1277 (1374)
Q Consensus 1199 ~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~-~g~~LSgGQrQrlai~~~~~~~~~~~ 1277 (1374)
+.+|++++++++.++++++++++|+||||.++ .|..|||||||||||
T Consensus 429 ---------------------~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlai----------- 476 (567)
T COG1132 429 ---------------------DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAI----------- 476 (567)
T ss_pred ---------------------CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHH-----------
Confidence 23567788888888999999999999999985 789999999999999
Q ss_pred cccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhcc
Q 000647 1278 INKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHS 1355 (1374)
Q Consensus 1278 ~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~~i~~~~ 1355 (1374)
|||++|+|+||||||||||||.++|+.+++.++. .|+|+|+||||+++++..|
T Consensus 477 -------------------------ARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD 531 (567)
T COG1132 477 -------------------------ARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNAD 531 (567)
T ss_pred -------------------------HHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCC
Confidence 9999999999999999999999999999887642 5789999999999999999
Q ss_pred ceEEEEcCC
Q 000647 1356 LELRLIDGE 1364 (1374)
Q Consensus 1356 ~~l~l~~g~ 1364 (1374)
+++.+.+|+
T Consensus 532 ~IiVl~~G~ 540 (567)
T COG1132 532 RIIVLDNGR 540 (567)
T ss_pred EEEEEECCE
Confidence 999996654
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-54 Score=581.59 Aligned_cols=189 Identities=15% Similarity=0.195 Sum_probs=150.9
Q ss_pred CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCC----cCCccEEEeCCCCc-----cccccEEEEecCCCCCc-C
Q 000647 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW----PLVSGHIAKPGVGS-----DLNKEIFYVPQRPYTAV-G 527 (1374)
Q Consensus 458 ~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~----~~~~G~I~~~g~~~-----~~~~~i~~v~Q~p~l~~-~ 527 (1374)
+++|+|+|+++++||+++|+||||||||||+|+|+|+. +|.+|+|.++|.+. ..++.++||+|++.++. .
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 56999999999999999999999999999999999986 57899999999651 24567999999987665 6
Q ss_pred CHHHHhcCCCCCCc---ccCCCCH----HH-HHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000647 528 TLRDQLIYPLTSDQ---EVEPLTH----GG-MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1374)
Q Consensus 528 Tv~eni~~~~~~~~---~~~~~~~----~~-~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1374)
||+||+.|+..... .....+. ++ .+++++.++|.+..+....+ +....||||||||++|||+|+.+|++
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~---~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGN---DFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCC---CcCCCCCcccchHHHHHHHHHhCCCE
Confidence 99999988532110 0001111 12 24578999998776654311 11257999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChh--hHhhccEEEEecC
Q 000647 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPA--LVAFHDVVLSLDG 649 (1374)
Q Consensus 600 llLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~--~~~~~d~il~l~~ 649 (1374)
++|||||+|||+.+...+.+.+++ .|+|+|+++|++. ....+|++++|++
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~ 286 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE 286 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC
Confidence 999999999999999999888764 3899999999963 4467999999975
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-56 Score=491.62 Aligned_cols=199 Identities=27% Similarity=0.382 Sum_probs=163.0
Q ss_pred CcEEEeeeEEEcC--C-CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCC------
Q 000647 443 NYIEFSGVKVVTP--T-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG------ 508 (1374)
Q Consensus 443 ~~i~~~~v~~~~~--~-~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~------ 508 (1374)
..++++|+++.+. + ...+++++||+|++||.++|||.||||||--.+.++|++|. .+|+|.++|.+
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 4688999887653 2 35799999999999999999999999999999999999985 47999999975
Q ss_pred cc---cc-ccEEEEecCCCCC---cCCHHHHhcCCCCCCc-ccCCCCHHHHHHHHHHcCChh---HHhcCCCCccccCCC
Q 000647 509 SD---LN-KEIFYVPQRPYTA---VGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGD 577 (1374)
Q Consensus 509 ~~---~~-~~i~~v~Q~p~l~---~~Tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~~~~~~g~ 577 (1374)
.+ +| .+|+.++|+|..- .-||..+|.-+..... .......+++.+.|+.+|+.+ .++.+| +
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP--------H 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP--------H 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC--------c
Confidence 11 22 5799999999642 2488777764332111 112234567889999999965 355566 6
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 578 ~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+||||||||+.||.||+.+|++||.||||.|||.....+|.+.+++ .|..+++||||+..++ ++|+|++|..
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~ 233 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQH 233 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEec
Confidence 8999999999999999999999999999999999999999988864 5999999999999986 7999999975
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-53 Score=566.76 Aligned_cols=199 Identities=20% Similarity=0.237 Sum_probs=171.7
Q ss_pred CcEEEeeeEEEcC-CCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----ccccccEE
Q 000647 443 NYIEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIF 516 (1374)
Q Consensus 443 ~~i~~~~v~~~~~-~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~~~~~~i~ 516 (1374)
..|+++|+++.|+ +++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ .+.++.+|
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence 4699999999996 35789999999999999999999999999999999999999999999999864 13467899
Q ss_pred EEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000647 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1374)
Q Consensus 517 ~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1374)
|+||++.++. .|++||+.++...........++++.++++.++|.+..++.+ .+||||||||++|||||+.
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~--------~~LSGGqKQRLsLArALi~ 1078 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEA--------QDLSGGMQRKLSVAIAFVG 1078 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHHHHc
Confidence 9999998876 599999987532211111112356788999999998887765 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 596 KPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 596 ~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+|+++||||||||||+.+++.+.+.+++ .|+|||++||+++.+. .+|+|++|++
T Consensus 1079 ~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~ 1135 (2272)
T TIGR01257 1079 DAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQ 1135 (2272)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999998865 4899999999999885 7999999975
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-54 Score=550.59 Aligned_cols=461 Identities=16% Similarity=0.165 Sum_probs=308.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHHHHHH----HHHh
Q 000647 808 SAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGL----VTGM 882 (1374)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~----~~~~ 882 (1374)
.++..++.....++..+++.+...++...++++.++.+ .||+..+. .+..+|++ |++.+...+... +..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~----g~~~~r~~-~~~~i~~~~~~~~~~~~~~~ 260 (686)
T TIGR03797 186 AVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYST----GDLASRAM-GISQIRRILSGSTLTTLLSG 260 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCh----hHHHHHHh-HHHHHHHHHHHHHHHHHHHH
Confidence 33344455555566677777777788888888888765 66653222 34577886 666554443322 2111
Q ss_pred h---HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhcCC
Q 000647 883 V---KPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGG 959 (1374)
Q Consensus 883 ~---~~~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~~g 959 (1374)
+ ..++.+++++|.++++.. .++.+++++...+.+ ...+...+..+..+.............+++..++.
T Consensus 261 ~~~~~~~~~l~~~~~~l~li~l----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 332 (686)
T TIGR03797 261 IFALLNLGLMFYYSWKLALVAV----ALALVAIAVTLVLGL----LQVRKERRLLELSGKISGLTVQLINGISKLRVAGA 332 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcc
Confidence 1 123334556777766542 111111111111111 11222222222222322222233335678888887
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhh--hcccchhhhhhhHHHHHHHHHHH
Q 000647 960 GAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME--HKGDRALVSTQGELAHALRFLAS 1037 (1374)
Q Consensus 960 ~~~e~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~--~~~~~~~~~~~~~~~~a~~~~a~ 1037 (1374)
+..+...+++.+.+..+......+...+...+..++. .+...+.++++.. ..+.. +.|.+.. +..
T Consensus 333 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~il~~g~~lv~~g~l----tiG~lva----~~~ 399 (686)
T TIGR03797 333 ENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLP-----VLTSAALFAAAISLLGGAGL----SLGSFLA----FNT 399 (686)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCC----CHHHHHH----HHH
Confidence 6666555555555554433322222212111111111 1111222222221 11211 2233222 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCC-ccccc
Q 000647 1038 VVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLA 1116 (1374)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL 1116 (1374)
..++....+..+......+.+...+.+|+.++.+.+++.++ ... +.....|.|+|+||+|+||. ++++|
T Consensus 400 l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-----~~~-----~~~~~~~~I~~~nvsf~Y~~~~~~vL 469 (686)
T TIGR03797 400 AFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE-----AKT-----DPGKLSGAIEVDRVTFRYRPDGPLIL 469 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-----CcC-----CCCCCCceEEEEEEEEEcCCCCccce
Confidence 33344556667777777888888999999998754221110 000 01113578999999999964 67899
Q ss_pred ccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhcc
Q 000647 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIY 1194 (1374)
Q Consensus 1117 ~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~y 1194 (1374)
+|+||+|+|||++|||||||||||||+++|.|+|+|.+|+|.+||+|++++ +.+|++|++|||||++|+|||||||.+
T Consensus 470 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~ 549 (686)
T TIGR03797 470 DDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAG 549 (686)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhc
Confidence 999999999999999999999999999999999999999999999999988 578999999999999999999999987
Q ss_pred CCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhH
Q 000647 1195 PLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLI 1273 (1374)
Q Consensus 1195 p~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~ 1273 (1374)
+.+ .+|++++++++.++++++++++|+|+||.+ ++|.+|||||||||+|
T Consensus 550 ~~~-----------------------~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRial------- 599 (686)
T TIGR03797 550 GAP-----------------------LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLI------- 599 (686)
T ss_pred CCC-----------------------CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHH-------
Confidence 632 346778899999999999999999999997 5789999999999999
Q ss_pred HhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHhcCceEEEecCCCCchhh
Q 000647 1274 QLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPF 1353 (1374)
Q Consensus 1274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~~~~TvI~IaHRl~~i~~ 1353 (1374)
||||+++|+|||||||||+||.++|+.+.+.++..++|+|+||||+++++.
T Consensus 600 -----------------------------ARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~ 650 (686)
T TIGR03797 600 -----------------------------ARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN 650 (686)
T ss_pred -----------------------------HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc
Confidence 999999999999999999999999999988777678999999999999999
Q ss_pred ccceEEEEcC
Q 000647 1354 HSLELRLIDG 1363 (1374)
Q Consensus 1354 ~~~~l~l~~g 1363 (1374)
.|+++.|.+|
T Consensus 651 ~D~Iivl~~G 660 (686)
T TIGR03797 651 ADRIYVLDAG 660 (686)
T ss_pred CCEEEEEECC
Confidence 9999999654
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-52 Score=521.00 Aligned_cols=506 Identities=17% Similarity=0.201 Sum_probs=356.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAF-LRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHT 185 (1374)
Q Consensus 107 l~~~~~l~~~~t~ls~~~~~~~~~~~~al~-~~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l~~ 185 (1374)
++..+++.++...+.+..|...+.++|.+. ..+...++. ++++.++..++..+..|+...+..+.-..+..+++.
T Consensus 8 ~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 83 (544)
T TIGR01842 8 FIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLM----LTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQ 83 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777888899999999999766 333333322 222222223334455666666666666667778888
Q ss_pred HHhhccccccccccCCCCCChhHHHHccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 000647 186 RYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSE-LVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTM 264 (1374)
Q Consensus 186 ~yl~~~~~y~~~~~d~~~~npdqRit~Di~~~~~~~~~-l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~i 264 (1374)
+.+++....+.. ..++...++++|++.+.+.+.. ....++..++.. ++.. ++.+++|.+++++++..++...+
T Consensus 84 ~~~~~ll~~~~~----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~-~~~~-~l~~~~~~l~li~l~~~~l~~~i 157 (544)
T TIGR01842 84 PIFAASFSATLR----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMP-IYLL-VCFLLHPWIGILALGGAVVLVGL 157 (544)
T ss_pred HHHHHHhcCccc----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHH-HHHHHhhHHHHHHHHHHHHHHHH
Confidence 888887776653 2345578999999998876655 333333333222 2222 23356777665554444333333
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 265 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKY 344 (1374)
Q Consensus 265 ~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1374)
..++.+...+...+.++..++.........+++++|+.|+.|+.+.+++++.+++..+...+..+..........++. .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 236 (544)
T TIGR01842 158 ALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR-I 236 (544)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 334445555555556666666666667777789999999999999988888888776655543333222222221111 1
Q ss_pred HHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 000647 345 LGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELS 424 (1374)
Q Consensus 345 ~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~~ 424 (1374)
+.....+.+....+..| ..+.|.. ++. ..++..++.++..+......+.....+.+|+.++++.+++..
T Consensus 237 ~~~~~~~~~g~~l~~~g-----~it~g~l--~a~----~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 305 (544)
T TIGR01842 237 VLQSLVLGLGAYLAIDG-----EITPGMM--IAG----SILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRD 305 (544)
T ss_pred HHHHHHHHHHHHHHHcC-----CCCHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 11111111111001222 3355543 222 223344556777888888899999999999999987544321
Q ss_pred ccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEE
Q 000647 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503 (1374)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~ 503 (1374)
. .. ......+.++++||+|.||++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 306 ~-~~--------~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 376 (544)
T TIGR01842 306 P-AM--------PLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376 (544)
T ss_pred C-CC--------CCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 0 00 001113469999999999864 6899999999999999999999999999999999999999999999
Q ss_pred eCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---c
Q 000647 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---N 574 (1374)
Q Consensus 504 ~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~ 574 (1374)
++|.+ ..+++.++||||+|++|++|++|||.++.+ ..+++++.++++.++++++++++|.+.++ +
T Consensus 377 ~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~ 450 (544)
T TIGR01842 377 LDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE------NADPEKIIEAAKLAGVHELILRLPDGYDTVIGP 450 (544)
T ss_pred ECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCC------CCCHHHHHHHHHHhChHHHHHhCccccccccCC
Confidence 99865 235778999999999999999999986532 24678899999999999999999876554 4
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHhhccEEEEecC
Q 000647 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 575 ~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
.|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++ .++|+|+||||++.++.+|+++++++
T Consensus 451 ~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~ 528 (544)
T TIGR01842 451 GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQD 528 (544)
T ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 6889999999999999999999999999999999999999999998865 47999999999999999999999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-54 Score=545.94 Aligned_cols=190 Identities=23% Similarity=0.302 Sum_probs=153.3
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCccccccEEEEecCCC
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~~~~~~i~~v~Q~p~ 523 (1374)
.|+++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+.+|++|+|.+++. ..++|++|.+.
T Consensus 3 ~l~i~~ls~~~~-~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-----~~~~~l~q~~~ 76 (635)
T PRK11147 3 LISIHGAWLSFS-DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-----LIVARLQQDPP 76 (635)
T ss_pred EEEEeeEEEEeC-CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-----CEEEEeccCCC
Confidence 589999999995 468999999999999999999999999999999999999999999999862 24789999764
Q ss_pred C-CcCCHHHHhcCCCC-------------------C-Cc--------------ccCCCCHHHHHHHHHHcCChhHHhcCC
Q 000647 524 T-AVGTLRDQLIYPLT-------------------S-DQ--------------EVEPLTHGGMVELLKNVDLEYLLDRYP 568 (1374)
Q Consensus 524 l-~~~Tv~eni~~~~~-------------------~-~~--------------~~~~~~~~~~~~~l~~~~L~~~~~~~~ 568 (1374)
. ..+++.+++..+.. . .. ......+.++.++++.+++.. ++.+
T Consensus 77 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~ 154 (635)
T PRK11147 77 RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP--DAAL 154 (635)
T ss_pred CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC--CCch
Confidence 3 23566665421100 0 00 000012345667777777752 3322
Q ss_pred CCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEccChhhHh-hccEEEEe
Q 000647 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSL 647 (1374)
Q Consensus 569 ~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~~~~TiI~vtH~~~~~~-~~d~il~l 647 (1374)
.+|||||||||+|||||+.+|++|||||||++||+++.+.+.+.+++.+.|+|+||||..++. .||+|++|
T Consensus 155 --------~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L 226 (635)
T PRK11147 155 --------SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDL 226 (635)
T ss_pred --------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 589999999999999999999999999999999999999999999887789999999999885 68999999
Q ss_pred cC
Q 000647 648 DG 649 (1374)
Q Consensus 648 ~~ 649 (1374)
++
T Consensus 227 ~~ 228 (635)
T PRK11147 227 DR 228 (635)
T ss_pred EC
Confidence 85
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-53 Score=549.02 Aligned_cols=469 Identities=20% Similarity=0.200 Sum_probs=309.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHHHHH----HHHHhh
Q 000647 809 AASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSG----LVTGMV 883 (1374)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~----~~~~~~ 883 (1374)
++..++.....++..++..+...++..+++++.++.+ .||+..+ ..+..+|++.| +.+...+.. ++..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~----~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~ 279 (710)
T TIGR03796 205 LLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRH----AGDIASRVQLN-DQVAEFLSGQLATTALDAV 279 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCc----ccHHHHHhhhH-HHHHHHHHHHHHHHHHHHH
Confidence 3344455555566667777777777778888777764 5665322 23467888877 444433322 222221
Q ss_pred ---HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhcCCc
Q 000647 884 ---KPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGG 960 (1374)
Q Consensus 884 ---~~~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~~g~ 960 (1374)
..++.+++++|.++++.. ..+++++++...+.+ ...+...+..+..+.+.......-...+++..++.+
T Consensus 280 ~~~~~~~~l~~~~~~l~li~l----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e 351 (710)
T TIGR03796 280 MLVFYALLMLLYDPVLTLIGI----AFAAINVLALQLVSR----RRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLE 351 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCC
Confidence 122334566777666531 111122222111111 112222222222222222222223356788888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhh--hcccchhhhhhhHHHHHHHHHHHH
Q 000647 961 AREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME--HKGDRALVSTQGELAHALRFLASV 1038 (1374)
Q Consensus 961 ~~e~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~--~~~~~~~~~~~~~~~~a~~~~a~~ 1038 (1374)
..+.+.+++.+.+..+......+...+......++. .+...+.++++.. ..+.. +.|.+.. +...
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~il~~g~~~v~~g~l----t~G~lva----~~~l 418 (710)
T TIGR03796 352 SDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLT-----SLNSALILVVGGLRVMEGQL----TIGMLVA----FQSL 418 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCC----CHHHHHH----HHHH
Confidence 666666655555555433322221111111111111 1111112222211 11111 2233322 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCC-cccccc
Q 000647 1039 VSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLAR 1117 (1374)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~ 1117 (1374)
.+..+..+..+......+.+...+++|+.++.+.+++.+......... +.. +.....|.|+|+||+|.||+ .+++|+
T Consensus 419 ~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~-~~~-~~~~~~~~I~~~~vsf~y~~~~~~vL~ 496 (710)
T TIGR03796 419 MSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAA-GSE-PSPRLSGYVELRNITFGYSPLEPPLIE 496 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccc-ccc-cCCCCCCeEEEEEEEEecCCCCCCccc
Confidence 344455666777777888888899999999876532211100000000 000 10123578999999999986 578999
Q ss_pred cceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhccC
Q 000647 1118 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYP 1195 (1374)
Q Consensus 1118 ~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp 1195 (1374)
|+||+|+|||++|||||||||||||+++|.|+|+|.+|+|.+||.|++++ +.+|++|++|||||++|+|||||||.++
T Consensus 497 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~ 576 (710)
T TIGR03796 497 NFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLW 576 (710)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999988 4789999999999999999999999865
Q ss_pred CChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhHH
Q 000647 1196 LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQ 1274 (1374)
Q Consensus 1196 ~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~ 1274 (1374)
.+ +..|++++++++.+++.++++++|+||||.+ ++|.+|||||||||||
T Consensus 577 ~~----------------------~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaL-------- 626 (710)
T TIGR03796 577 DP----------------------TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEI-------- 626 (710)
T ss_pred CC----------------------CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHH--------
Confidence 32 2457778999999999999999999999997 5789999999999999
Q ss_pred hhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHhcCceEEEecCCCCchhhc
Q 000647 1275 LCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFH 1354 (1374)
Q Consensus 1275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~~~~TvI~IaHRl~~i~~~ 1354 (1374)
||||+++|+|+||||||||||.++|+.+.+.++..++|+|+||||+++++..
T Consensus 627 ----------------------------ARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~ 678 (710)
T TIGR03796 627 ----------------------------ARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDC 678 (710)
T ss_pred ----------------------------HHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhC
Confidence 9999999999999999999999999999887777899999999999999999
Q ss_pred cceEEEEcC
Q 000647 1355 SLELRLIDG 1363 (1374)
Q Consensus 1355 ~~~l~l~~g 1363 (1374)
|+++.|.+|
T Consensus 679 D~Iivl~~G 687 (710)
T TIGR03796 679 DEIIVLERG 687 (710)
T ss_pred CEEEEEeCC
Confidence 999999554
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-53 Score=547.82 Aligned_cols=463 Identities=17% Similarity=0.186 Sum_probs=310.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHHHHHHH----HHhh--
Q 000647 811 SSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLV----TGMV-- 883 (1374)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~~----~~~~-- 883 (1374)
..++.....++..+++.+...++...+++++++.+ .||+..+ ..+..+|++ |.+.+...+.... ..++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~----~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~ 283 (708)
T TIGR01193 209 QQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRR----TGEIVSRFT-DASSIIDALASTILSLFLDMWIL 283 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCc----hhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666666677777777777777765 6665322 234678887 7766554433221 1111
Q ss_pred -HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhcCCcHH
Q 000647 884 -KPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAR 962 (1374)
Q Consensus 884 -~~~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~~g~~~ 962 (1374)
..++.+++++|.++.+.. ..+.+++++...+.+ ...+...+..+..+.+.......-.+.+++..++.+..
T Consensus 284 ~~~~~~l~~~~~~l~li~l----~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 355 (708)
T TIGR01193 284 VIVGLFLVRQNMLLFLLSL----LSIPVYAVIIILFKR----TFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAE 355 (708)
T ss_pred HHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHH
Confidence 122334566777766532 111222222222212 22222333333333333222223335788999987776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhh--hcccchhhhhhhHHHHHHHHHHHHHH
Q 000647 963 EKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME--HKGDRALVSTQGELAHALRFLASVVS 1040 (1374)
Q Consensus 963 e~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~--~~~~~~~~~~~~~~~~a~~~~a~~~~ 1040 (1374)
+.+.+++.+.+..+......+.......+..++. .+...+.++++.. ..+.. +.|.+.. +.....
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~il~~g~~lv~~g~l----s~G~lva----~~~l~~ 422 (708)
T TIGR01193 356 RYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTK-----LILNVVILWTGAYLVMRGKL----TLGQLIT----FNALLS 422 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCC----CHHHHHH----HHHHHH
Confidence 6666666665555433222111111111111111 1111112222221 11111 2233222 222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCCcccccccce
Q 000647 1041 QSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLT 1120 (1374)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~~ls 1120 (1374)
+.+..+..+......+.+...+++|+.++.+.+++.++ .......+ ...|.|+|+||+|.||+++++|+|+|
T Consensus 423 ~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-----~~~~~~~~---~~~~~I~~~~vsf~y~~~~~iL~~is 494 (708)
T TIGR01193 423 YFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFIN-----KKKRTELN---NLNGDIVINDVSYSYGYGSNILSDIS 494 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc-----cccccCCC---CCCCcEEEEEEEEEcCCCCcceecee
Confidence 45566677777788888888999999998764322111 00001111 23678999999999987788999999
Q ss_pred EEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhccCCCh
Q 000647 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSR 1198 (1374)
Q Consensus 1121 ~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~ 1198 (1374)
|+|+|||++|||||||||||||+++|.|+|+|++|+|++||+|++++ +.+|++|+||||||+||+|||||||.++..
T Consensus 495 l~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~- 573 (708)
T TIGR01193 495 LTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK- 573 (708)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCC-
Confidence 99999999999999999999999999999999999999999999998 478899999999999999999999987631
Q ss_pred hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhHHhhh
Q 000647 1199 EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQLCS 1277 (1374)
Q Consensus 1199 ~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~~~~ 1277 (1374)
.+.+|++++++++.+++.++++++|.||||.+ ++|.+|||||||||+|
T Consensus 574 --------------------~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRial----------- 622 (708)
T TIGR01193 574 --------------------ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIAL----------- 622 (708)
T ss_pred --------------------CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHH-----------
Confidence 12356778889999999999999999999997 4789999999999999
Q ss_pred cccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh-cCceEEEecCCCCchhhccc
Q 000647 1278 INKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD-MGITFVTSSQRPALIPFHSL 1356 (1374)
Q Consensus 1278 ~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~-~~~TvI~IaHRl~~i~~~~~ 1356 (1374)
|||++++|+|||||||||+||.++|+.+++.++. .++|+|+||||+++++..|+
T Consensus 623 -------------------------ARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~ 677 (708)
T TIGR01193 623 -------------------------ARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDK 677 (708)
T ss_pred -------------------------HHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCE
Confidence 9999999999999999999999999998876654 58999999999999999999
Q ss_pred eEEEEcCC
Q 000647 1357 ELRLIDGE 1364 (1374)
Q Consensus 1357 ~l~l~~g~ 1364 (1374)
++.+.+|.
T Consensus 678 i~~l~~G~ 685 (708)
T TIGR01193 678 IIVLDHGK 685 (708)
T ss_pred EEEEECCE
Confidence 99997653
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-52 Score=522.86 Aligned_cols=461 Identities=22% Similarity=0.252 Sum_probs=301.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHHHHHHHH----HhhH---
Q 000647 813 FIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVT----GMVK--- 884 (1374)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~~~----~~~~--- 884 (1374)
++.+...++..+.+.+...++..++++++++.+ .||+..+. .+..+|++.|++.+...+...+. .++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~----g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~ 150 (574)
T PRK11160 75 AGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQ----GDLLNRLVADVDTLDHLYLRLISPLVAALVVILV 150 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555666666667777777766653 56654322 35679999999988765443222 2222
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhcCCcHHHH
Q 000647 885 PSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREK 964 (1374)
Q Consensus 885 ~~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~~g~~~e~ 964 (1374)
.++.++++.|+++++... .+...+++....+.+.. .....+.++..+.+.......-.+.+++..|+.+..+.
T Consensus 151 ~~~~l~~~~~~l~l~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~ 223 (574)
T PRK11160 151 LTIGLSFFDLTLALTLGG---ILLLLLLLLPLLFYRLG----KKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYR 223 (574)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHH
Confidence 233445678888776421 11111111111111111 11122222222233322223333567788888776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhhh-cccchhhhhhhHHHHHHHHHHHHHHHHH
Q 000647 965 AMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEH-KGDRALVSTQGELAHALRFLASVVSQSF 1043 (1374)
Q Consensus 965 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~~~~~~a~~~~a~~~~~~~ 1043 (1374)
+.+++..++..+......+...+......++ ..+..++.++++... .+. .+.|.+...+.+... ..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~g~~~~~g~----~t~g~l~a~~~~~~~---~~~ 291 (574)
T PRK11160 224 QQLEQTEQQWLAAQRRQANLTGLSQALMILA-----NGLTVVLMLWLAAGGVGGN----AQPGALIALFVFAAL---AAF 291 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhccc----cchhHHHHHHHHHHH---HHH
Confidence 5555544444433222221111111111111 111122223333221 111 122332222211111 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCCc-ccccccceEE
Q 000647 1044 LAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ-KLLARQLTFE 1122 (1374)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~-~~vL~~ls~~ 1122 (1374)
..+..+......+.+...+.+|+.++.+..++.+. .... .. ....+.|+|+||+|.||++ +++|+|+||+
T Consensus 292 ~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~----~~~~--~~---~~~~~~i~~~~v~f~y~~~~~~il~~i~~~ 362 (574)
T PRK11160 292 EALMPVAGAFQHLGQVIASARRINEITEQKPEVTF----PTTS--TA---AADQVSLTLNNVSFTYPDQPQPVLKGLSLQ 362 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC----Cccc--CC---CCCCCeEEEEEEEEECCCCCCcceecceEE
Confidence 23344455566677778899999998764322110 0000 00 1125789999999999874 6899999999
Q ss_pred EeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhccCCChhH
Q 000647 1123 IVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREE 1200 (1374)
Q Consensus 1123 I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e 1200 (1374)
|+|||+++||||||||||||+++|.|+|+|.+|+|.+||+|++++ ..+|++|++|||||++|+|||||||.++.+
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~--- 439 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP--- 439 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC---
Confidence 999999999999999999999999999999999999999999988 467889999999999999999999987642
Q ss_pred HHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhHHhhhcc
Q 000647 1201 AELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQLCSIN 1279 (1374)
Q Consensus 1201 ~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~~~~~~ 1279 (1374)
+..|++++++++.+++++++++ |+||||.+ ++|.+|||||||||||
T Consensus 440 -------------------~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRial------------- 486 (574)
T PRK11160 440 -------------------NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGI------------- 486 (574)
T ss_pred -------------------ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHH-------------
Confidence 2356778899999999999999 99999997 4789999999999999
Q ss_pred cccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccce
Q 000647 1280 KISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLE 1357 (1374)
Q Consensus 1280 ~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~~i~~~~~~ 1357 (1374)
|||++++|+|+|||||||+||.++|+.+++.+++ .++|+|+||||+++++..|++
T Consensus 487 -----------------------ARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i 543 (574)
T PRK11160 487 -----------------------ARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRI 543 (574)
T ss_pred -----------------------HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEE
Confidence 9999999999999999999999999998886654 489999999999999999999
Q ss_pred EEEEcCC
Q 000647 1358 LRLIDGE 1364 (1374)
Q Consensus 1358 l~l~~g~ 1364 (1374)
+.+.+|+
T Consensus 544 ~~l~~G~ 550 (574)
T PRK11160 544 CVMDNGQ 550 (574)
T ss_pred EEEeCCe
Confidence 9996654
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-52 Score=527.05 Aligned_cols=462 Identities=17% Similarity=0.233 Sum_probs=303.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHHHHH----HHHHhh-
Q 000647 810 ASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSG----LVTGMV- 883 (1374)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~----~~~~~~- 883 (1374)
+..++.....++..++..+....+...+++++++.+ .+|+..+ ..+..+|++.|++.+...+.. ++..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~----~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~ 152 (582)
T PRK11176 77 LRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQS----TGTLLSRITYDSEQVASSSSGALITVVREGAS 152 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555556666667777777777654 4554322 234678999999877655433 222222
Q ss_pred --HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhcCCcH
Q 000647 884 --KPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGA 961 (1374)
Q Consensus 884 --~~~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~~g~~ 961 (1374)
..++.++++.|.++++.. ..++.+.++. ....+...+...+.++..+.........-.+.+++..++.+.
T Consensus 153 ~~~~~~~l~~~~~~l~l~~l----~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~ 224 (582)
T PRK11176 153 IIGLFIMMFYYSWQLSLILI----VIAPIVSIAI----RVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQE 224 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCH
Confidence 223344566777665532 1111111111 111112222222222222222222222233567788888766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhh--hcccchhhhhhhHHHHHHHHHHHHH
Q 000647 962 REKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME--HKGDRALVSTQGELAHALRFLASVV 1039 (1374)
Q Consensus 962 ~e~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~--~~~~~~~~~~~~~~~~a~~~~a~~~ 1039 (1374)
.+.+.+++..++..+......+...+......++. .+...+.++++.. ..+.. +.|.+.... ...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~g~~~~~~g~i----s~g~~~~~~----~~~ 291 (582)
T PRK11176 225 VETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIA-----SLALAFVLYAASFPSVMDTL----TAGTITVVF----SSM 291 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCC----CHHHHHHHH----HHH
Confidence 66555555554444433322222222122111111 0111111111111 11111 223322221 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCC-ccccccc
Q 000647 1040 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQ 1118 (1374)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~ 1118 (1374)
.+.+..+..+......+.....+.+|+.++.+..++.+ .+ +...+ ...+.|+|+||+|.||+ .+++|+|
T Consensus 292 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~------~~--~~~~~--~~~~~i~~~~vsf~y~~~~~~il~~ 361 (582)
T PRK11176 292 IALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKD------EG--KRVIE--RAKGDIEFRNVTFTYPGKEVPALRN 361 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC------CC--CcCCC--CCCCeEEEEEEEEecCCCCCccccC
Confidence 33445566666667777777888999988865321110 00 01111 12467999999999986 4789999
Q ss_pred ceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhccCC
Q 000647 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPL 1196 (1374)
Q Consensus 1119 ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~ 1196 (1374)
+||+|+|||++||||+||||||||+++|.|+|+|.+|+|.+||+|++++ +.+|++|+||||||++|+|||||||.++.
T Consensus 362 i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~ 441 (582)
T PRK11176 362 INFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYAR 441 (582)
T ss_pred ceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999988 46788899999999999999999998863
Q ss_pred ChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhHHh
Q 000647 1197 SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQL 1275 (1374)
Q Consensus 1197 ~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~~ 1275 (1374)
+. +..|++++++++.+++.++++++|+|+||.+ ++|.+|||||||||+|
T Consensus 442 ~~---------------------~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~L--------- 491 (582)
T PRK11176 442 TE---------------------QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAI--------- 491 (582)
T ss_pred CC---------------------CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHH---------
Confidence 21 2457789999999999999999999999997 4789999999999999
Q ss_pred hhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhh
Q 000647 1276 CSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPF 1353 (1374)
Q Consensus 1276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~~i~~ 1353 (1374)
||||+|+|+|+||||||||||.++|+.+.+.++. .++|+|+||||+++++.
T Consensus 492 ---------------------------ARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~ 544 (582)
T PRK11176 492 ---------------------------ARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK 544 (582)
T ss_pred ---------------------------HHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh
Confidence 9999999999999999999999999988876654 58999999999999999
Q ss_pred ccceEEEEcC
Q 000647 1354 HSLELRLIDG 1363 (1374)
Q Consensus 1354 ~~~~l~l~~g 1363 (1374)
.|+++.+.+|
T Consensus 545 ~D~Ii~l~~g 554 (582)
T PRK11176 545 ADEILVVEDG 554 (582)
T ss_pred CCEEEEEECC
Confidence 9999999654
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-52 Score=527.31 Aligned_cols=466 Identities=16% Similarity=0.225 Sum_probs=314.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHHHHHHHHHhh-
Q 000647 806 LQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMV- 883 (1374)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~~~~~~- 883 (1374)
+..++..++.+...++..+...+...++...+++++++.+ .+++.. ...+..+|++.|++.+...+...+..++
T Consensus 62 ~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~----~~g~~~~~l~~di~~i~~~~~~~~~~~i~ 137 (571)
T TIGR02203 62 GLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQ----PTGTLLSRITFDSEQVASAATDAFIVLVR 137 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC----CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555566666766777777777777777754 555432 2245689999999988765544333222
Q ss_pred ------HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhc
Q 000647 884 ------KPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFF 957 (1374)
Q Consensus 884 ------~~~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~ 957 (1374)
..++.+++++|.++.+.. +.++.+.++. ....+...+...+..+.++...........+.+++..+
T Consensus 138 ~~~~~~~~~~~l~~~~~~l~~i~l----~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~ 209 (571)
T TIGR02203 138 ETLTVIGLFIVLLYYSWQLTLIVV----VMLPVLSILM----RRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLF 209 (571)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHh
Confidence 223334556776655531 1111111111 11112222333333444444444444444567888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhh--hcccchhhhhhhHHHHHHHHH
Q 000647 958 GGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME--HKGDRALVSTQGELAHALRFL 1035 (1374)
Q Consensus 958 ~g~~~e~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~--~~~~~~~~~~~~~~~~a~~~~ 1035 (1374)
+.+..+...+++.+++..+......+...+...+...+ ..+...+.++++.. ..+. .+.|.+....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~g~----lt~g~l~a~~--- 277 (571)
T TIGR02203 210 GGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLI-----ASLALAVVLFIALFQAQAGS----LTAGDFTAFI--- 277 (571)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCC----CCHhHHHHHH---
Confidence 86665555554444444333222222222222111111 11111222222211 1111 1233332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCC-ccc
Q 000647 1036 ASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKL 1114 (1374)
Q Consensus 1036 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~ 1114 (1374)
.++.+.+..+..+......+.+...+.+|+.++.+.+++.+. .. ...+ ...+.|+|+||+|+||+ .++
T Consensus 278 -~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~------~~--~~~~--~~~~~i~~~~v~f~y~~~~~~ 346 (571)
T TIGR02203 278 -TAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT------GT--RAIE--RARGDVEFRNVTFRYPGRDRP 346 (571)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC------CC--CCCC--CCCCeEEEEEEEEEcCCCCCc
Confidence 233445566667777777888888999999988753221110 00 0111 12568999999999986 578
Q ss_pred ccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHh
Q 000647 1115 LARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQI 1192 (1374)
Q Consensus 1115 vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl 1192 (1374)
+|+|+||+|+|||+++|||+||||||||+++|.|+|+|.+|+|.+||+|++++ +.+|++++||||+|++|+|||||||
T Consensus 347 il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni 426 (571)
T TIGR02203 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNI 426 (571)
T ss_pred cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999988 4678899999999999999999999
Q ss_pred ccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchh
Q 000647 1193 IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLV 1271 (1374)
Q Consensus 1193 ~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~ 1271 (1374)
.++.+. +..|++++++++.++++++++++|+|+||.+ ++|.+|||||||||||
T Consensus 427 ~~~~~~---------------------~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaL----- 480 (571)
T TIGR02203 427 AYGRTE---------------------QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAI----- 480 (571)
T ss_pred hcCCCC---------------------CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHH-----
Confidence 876420 2457789999999999999999999999997 5789999999999999
Q ss_pred hHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCC
Q 000647 1272 LIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPA 1349 (1374)
Q Consensus 1272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~ 1349 (1374)
|||++++|+|+|||||||+||.++++.+.+.++. .++|+|+||||++
T Consensus 481 -------------------------------ARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~ 529 (571)
T TIGR02203 481 -------------------------------ARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLS 529 (571)
T ss_pred -------------------------------HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhH
Confidence 9999999999999999999999999998876654 5899999999999
Q ss_pred chhhccceEEEEcC
Q 000647 1350 LIPFHSLELRLIDG 1363 (1374)
Q Consensus 1350 ~i~~~~~~l~l~~g 1363 (1374)
.++.+|+++.+.+|
T Consensus 530 ~~~~~D~ii~l~~g 543 (571)
T TIGR02203 530 TIEKADRIVVMDDG 543 (571)
T ss_pred HHHhCCEEEEEeCC
Confidence 99999999999654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-52 Score=536.36 Aligned_cols=462 Identities=18% Similarity=0.199 Sum_probs=306.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeecCCCCCCCCccchHHHHHHHHHHHHHHH----HHh---
Q 000647 810 ASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLV----TGM--- 882 (1374)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~~----~~~--- 882 (1374)
+..++.....++..+++.+...++...++++.++.+.-|+ +. ...+..+|+ .|++.+...+...+ ..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~--~~--~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~ 273 (694)
T TIGR03375 199 FDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEAR--PA--SVGSFANQL-REFESVRDFFTSATLTALIDLPFA 273 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC--CC--ChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444555555666666677777777777777777653232 22 223456888 68887765543322 111
Q ss_pred hHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhcCCcHH
Q 000647 883 VKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAR 962 (1374)
Q Consensus 883 ~~~~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~~g~~~ 962 (1374)
+..++.+++++|.++++.. ..+.+++++...+.+ ...+...+..+..+.........-...+++..++.+..
T Consensus 274 ~~~~~~l~~~~~~l~li~l----~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 345 (694)
T TIGR03375 274 LLFLLVIAIIGGPLVWVPL----VAIPLILLPGLLLQR----PLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGR 345 (694)
T ss_pred HHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHH
Confidence 1223344556777766531 111122222111111 12222222222222232222223335678888887666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhhh--cccchhhhhhhHHHHHHHHHHHHHH
Q 000647 963 EKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEH--KGDRALVSTQGELAHALRFLASVVS 1040 (1374)
Q Consensus 963 e~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~--~~~~~~~~~~~~~~~a~~~~a~~~~ 1040 (1374)
+.+.+++.+.+..+......+...+...+..++ ..+...+.++++... .+. .+.|.+.. +.....
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~il~~g~~~v~~g~----ls~G~l~a----~~~~~~ 412 (694)
T TIGR03375 346 FQRRWEQTVAALARSGLKSRFLSNLATNFAQFI-----QQLVSVAIVVVGVYLISDGE----LTMGGLIA----CVMLSG 412 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCC----CCHHHHHH----HHHHHH
Confidence 655555555544433222211111111111111 111111122222211 111 12233322 222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCC-cccccccc
Q 000647 1041 QSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQL 1119 (1374)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~l 1119 (1374)
+.+..+..+.....++.+...+.+|+.++.+.+++.++ ... .. +.....|.|+|+||+|+||+ .+++|+|+
T Consensus 413 ~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~-----~~~-~~--~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i 484 (694)
T TIGR03375 413 RALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE-----GTR-FL--HRPRLQGEIEFRNVSFAYPGQETPALDNV 484 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-----CCC-CC--CCCCccceEEEEEEEEEeCCCCccceeee
Confidence 44556666677777888888999999998765322111 000 00 01113578999999999986 57899999
Q ss_pred eEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhccCCC
Q 000647 1120 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLS 1197 (1374)
Q Consensus 1120 s~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~ 1197 (1374)
||+|+|||++||||+||||||||+++|.|+|+|.+|+|.+||+|++++ +.+|++|++|||||++|+|||||||.++.+
T Consensus 485 ~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~ 564 (694)
T TIGR03375 485 SLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP 564 (694)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999988 578999999999999999999999987632
Q ss_pred hhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhHHhh
Q 000647 1198 REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQLC 1276 (1374)
Q Consensus 1198 ~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~~~ 1276 (1374)
+.+|++++++++.+++.++++.+|+||||.+ ++|.+|||||||||||
T Consensus 565 ----------------------~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlal---------- 612 (694)
T TIGR03375 565 ----------------------YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVAL---------- 612 (694)
T ss_pred ----------------------CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHH----------
Confidence 2457778899999999999999999999997 5789999999999999
Q ss_pred hcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhc
Q 000647 1277 SINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFH 1354 (1374)
Q Consensus 1277 ~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~~i~~~ 1354 (1374)
||||+++|+|+|||||||+||.++|+.+++.+++ .++|+|+||||+++++.+
T Consensus 613 --------------------------ARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~ 666 (694)
T TIGR03375 613 --------------------------ARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLV 666 (694)
T ss_pred --------------------------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhC
Confidence 9999999999999999999999999999886654 489999999999999999
Q ss_pred cceEEEEcC
Q 000647 1355 SLELRLIDG 1363 (1374)
Q Consensus 1355 ~~~l~l~~g 1363 (1374)
|+++.+.+|
T Consensus 667 D~iivl~~G 675 (694)
T TIGR03375 667 DRIIVMDNG 675 (694)
T ss_pred CEEEEEeCC
Confidence 999999655
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-52 Score=521.20 Aligned_cols=464 Identities=17% Similarity=0.186 Sum_probs=303.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHHHHHH----H
Q 000647 805 VLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGL----V 879 (1374)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~----~ 879 (1374)
++..++..++.+...++..++..+...++...+++++++.+ .||+..+ ..+..+|+++|++.+...+... +
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~----~g~~~~~l~~di~~i~~~~~~~~~~~~ 126 (529)
T TIGR02857 51 ALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRP----SGELATLALEGVEALDGYFARYLPQLV 126 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCC----hHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344444555555666667777777777788888877764 6665322 2456899999998876544332 2
Q ss_pred HHhhH---hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhh
Q 000647 880 TGMVK---PSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAF 956 (1374)
Q Consensus 880 ~~~~~---~~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~ 956 (1374)
..++. .++.++++.|.++.+... .++..+++...+.+ .......+.....+.........-.+.+++..
T Consensus 127 ~~~~~~~~~~~~l~~~~~~l~~~~l~----~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~ 198 (529)
T TIGR02857 127 LAVIIPLAILAAVFPADWISGLILLL----TAPLIPIFMILIGW----AAQAAARKQWAALSRLSGHFLDRLRGLPTLKL 198 (529)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 22222 223345567766554311 11111111111111 11111222222222222222222235688888
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhh-hcccchhhhhhhHHHHHHHHH
Q 000647 957 FGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME-HKGDRALVSTQGELAHALRFL 1035 (1374)
Q Consensus 957 ~~g~~~e~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-~~~~~~~~~~~~~~~~a~~~~ 1035 (1374)
|+.+..+...+++..++..+......+...+......++.. + ...++.++.+.. ..+. .+.+.+.. +
T Consensus 199 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~g~----~t~g~~~~----~ 266 (529)
T TIGR02857 199 FGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT-L---SVALVAVYIGFRLLAGD----LDLATGLF----V 266 (529)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHcCC----CCHHHHHH----H
Confidence 88766665555444444333322222211111111111110 1 011111111111 1121 12222221 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCCc-cc
Q 000647 1036 ASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ-KL 1114 (1374)
Q Consensus 1036 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~-~~ 1114 (1374)
..+..+.+..+..+......+.....+.+|+.++.+.. ++. ... .+...+. .+.|+|+||+|.||+. ++
T Consensus 267 ~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~---~~~--~~~--~~~~~~~---~~~i~~~~v~f~y~~~~~~ 336 (529)
T TIGR02857 267 LLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAP---RPL--AGK--APVTAAP---APSLEFSGLSVAYPGRRAP 336 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---ccc--CCC--cCCCCCC---CCeEEEEEEEEECCCCCcc
Confidence 22233444556666667777788888999999987521 110 000 0111111 3679999999999874 58
Q ss_pred ccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHh
Q 000647 1115 LARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQI 1192 (1374)
Q Consensus 1115 vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl 1192 (1374)
+|+|+||+|+|||+++||||||||||||+++|.|+|+|.+|+|.+||.|++++ +.+|+++++|||||++|+|||||||
T Consensus 337 il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni 416 (529)
T TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENI 416 (529)
T ss_pred cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999988 4678899999999999999999999
Q ss_pred ccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchh
Q 000647 1193 IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLV 1271 (1374)
Q Consensus 1193 ~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~ 1271 (1374)
.++.+ +..|++++++++.++++++++++|+||||.+ ++|.+||||||||+++
T Consensus 417 ~~~~~----------------------~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~l----- 469 (529)
T TIGR02857 417 RLARP----------------------DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLAL----- 469 (529)
T ss_pred hccCC----------------------CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHH-----
Confidence 87642 1346778899999999999999999999997 4789999999999999
Q ss_pred hHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCC
Q 000647 1272 LIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPA 1349 (1374)
Q Consensus 1272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~ 1349 (1374)
|||++++|+|+|||||||+||.++|+.+++.+++ .++|+|+||||++
T Consensus 470 -------------------------------aRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 518 (529)
T TIGR02857 470 -------------------------------ARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLA 518 (529)
T ss_pred -------------------------------HHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 9999999999999999999999999999886654 5899999999999
Q ss_pred chhhccceEEE
Q 000647 1350 LIPFHSLELRL 1360 (1374)
Q Consensus 1350 ~i~~~~~~l~l 1360 (1374)
+++.+|+++.+
T Consensus 519 ~~~~~d~i~~l 529 (529)
T TIGR02857 519 LAERADRIVVL 529 (529)
T ss_pred HHHhCCEEEeC
Confidence 99999988764
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=540.41 Aligned_cols=192 Identities=23% Similarity=0.277 Sum_probs=151.0
Q ss_pred CCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEe
Q 000647 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 1177 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~V 1177 (1374)
..|+++||++.|++.+.+|+|+||+|++|++++|+||||||||||+++|.|+.+|.+|+|.+++. .+|+|+
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~---------~~igyv 577 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK---------VRMAVF 577 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc---------eeEEEE
Confidence 35999999999976667999999999999999999999999999999999999999999987653 469999
Q ss_pred cCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCch-hhhhhccCCccccccccCC
Q 000647 1178 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY-LLEREEVGWDANLNWEDIL 1256 (1374)
Q Consensus 1178 pQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~-~v~~~~~Gldt~~~~g~~L 1256 (1374)
||+|+. .-++.+|..... ... .....++++.++|+.+++.. ...+ ....|
T Consensus 578 ~Q~~~~-~l~~~~~~~~~~---------~~~---------~~~~~~~~i~~~L~~~gl~~~~~~~----------~~~~L 628 (718)
T PLN03073 578 SQHHVD-GLDLSSNPLLYM---------MRC---------FPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTL 628 (718)
T ss_pred eccccc-cCCcchhHHHHH---------HHh---------cCCCCHHHHHHHHHHCCCChHHhcC----------Ccccc
Confidence 999742 224444432110 000 00123456777888887742 2211 24679
Q ss_pred ChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh
Q 000647 1257 SLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD 1336 (1374)
Q Consensus 1257 SgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~ 1336 (1374)
|||||||++| |||++++|++|||||||++||.++.+.+.+.++.
T Consensus 629 SgGqkqRvaL------------------------------------AraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~ 672 (718)
T PLN03073 629 SGGQKSRVAF------------------------------------AKITFKKPHILLLDEPSNHLDLDAVEALIQGLVL 672 (718)
T ss_pred CHHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999998888776665
Q ss_pred cCceEEEecCCCCchh-hccceEEEEcC
Q 000647 1337 MGITFVTSSQRPALIP-FHSLELRLIDG 1363 (1374)
Q Consensus 1337 ~~~TvI~IaHRl~~i~-~~~~~l~l~~g 1363 (1374)
.+.|+|+|+|++..+. +.++++.+.+|
T Consensus 673 ~~gtvIivSHd~~~i~~~~drv~~l~~G 700 (718)
T PLN03073 673 FQGGVLMVSHDEHLISGSVDELWVVSEG 700 (718)
T ss_pred cCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 4459999999997765 57888888654
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-54 Score=486.52 Aligned_cols=259 Identities=23% Similarity=0.278 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCCccccc
Q 000647 1037 SVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLA 1116 (1374)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL 1116 (1374)
.++.|.......+-.+++.+.+.---+++++++.+..++..+ .|+..|-...+|.|+|+||+|.|..+++||
T Consensus 483 TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd--------~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl 554 (790)
T KOG0056|consen 483 TYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVD--------LPGAPPLKVTQGKIEFSNVTFAYDPGKPVL 554 (790)
T ss_pred HHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhc--------CCCCCCccccCCeEEEEEeEEecCCCCcee
Confidence 445566555555556677776666677899998765433211 112223334579999999999999999999
Q ss_pred ccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhcc
Q 000647 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIY 1194 (1374)
Q Consensus 1117 ~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~y 1194 (1374)
+|+||++.||++||+|||||+||||++++|+||||..+|+|+|||+||+.+ +.+|++|++||||.+||+.||-+||.|
T Consensus 555 ~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIry 634 (790)
T KOG0056|consen 555 SDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRY 634 (790)
T ss_pred ecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheee
Confidence 999999999999999999999999999999999999999999999999998 689999999999999999999999999
Q ss_pred CCC--hhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchh
Q 000647 1195 PLS--REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLV 1271 (1374)
Q Consensus 1195 p~~--~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~ 1271 (1374)
+.+ .+|+..+|+++ +++++.+-..|+||+|.+ ++|-.||||||||+||
T Consensus 635 ak~~AsneevyaAAkA------------------------A~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAi----- 685 (790)
T KOG0056|consen 635 AKPSASNEEVYAAAKA------------------------AQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAI----- 685 (790)
T ss_pred cCCCCChHHHHHHHHH------------------------hhHHHHHhcCchhhhhhhhhcccccCCcchhhHHH-----
Confidence 764 23333444443 333444556799999998 5899999999999999
Q ss_pred hHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCC
Q 000647 1272 LIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPA 1349 (1374)
Q Consensus 1272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~ 1349 (1374)
||+++++|.|++|||||||||..+|+++|..+.. .++|.|+||||++
T Consensus 686 -------------------------------ARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLS 734 (790)
T KOG0056|consen 686 -------------------------------ARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLS 734 (790)
T ss_pred -------------------------------HHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeeh
Confidence 9999999999999999999999999999985543 6999999999999
Q ss_pred chhhccceEEEEcC
Q 000647 1350 LIPFHSLELRLIDG 1363 (1374)
Q Consensus 1350 ~i~~~~~~l~l~~g 1363 (1374)
|+-..|.+|.+.+|
T Consensus 735 TivnAD~ILvi~~G 748 (790)
T KOG0056|consen 735 TIVNADLILVISNG 748 (790)
T ss_pred heecccEEEEEeCC
Confidence 99999999999654
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-52 Score=480.42 Aligned_cols=208 Identities=26% Similarity=0.343 Sum_probs=192.0
Q ss_pred CCCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccE
Q 000647 1097 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGI 1174 (1374)
Q Consensus 1097 ~g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i 1174 (1374)
.|.|+|+||+|+|+..++||+|+||+|++||||||||+|||||||++++|+||+| .+|+|.|||+||+++ +.+|+-|
T Consensus 349 ~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred CCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhe
Confidence 6789999999999988899999999999999999999999999999999999999 999999999999998 5789999
Q ss_pred EEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccc
Q 000647 1175 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWE 1253 (1374)
Q Consensus 1175 ~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g 1253 (1374)
++||||..||++||-+||.||... ..|+++.++.+..++++.+.++|+||+|.+ ++|
T Consensus 428 g~VPQd~~LFndTIl~NI~YGn~s----------------------as~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG 485 (591)
T KOG0057|consen 428 GVVPQDSVLFNDTILYNIKYGNPS----------------------ASDEEVVEACKRAGLHDVISRLPDGYQTLVGERG 485 (591)
T ss_pred eEeCCcccccchhHHHHhhcCCCC----------------------cCHHHHHHHHHHcCcHHHHHhccccchhhHhhcc
Confidence 999999999999999999998652 345566667777788888999999999998 589
Q ss_pred cCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHH
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL 1333 (1374)
Q Consensus 1254 ~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~ 1333 (1374)
..||||||||++| |||++++|.|+++|||||+||.++|+.+.++
T Consensus 486 ~~LSGGekQrvsl------------------------------------aRa~lKda~Il~~DEaTS~LD~~TE~~i~~~ 529 (591)
T KOG0057|consen 486 LMLSGGEKQRVSL------------------------------------ARAFLKDAPILLLDEATSALDSETEREILDM 529 (591)
T ss_pred cccccchHHHHHH------------------------------------HHHHhcCCCeEEecCcccccchhhHHHHHHH
Confidence 9999999999999 9999999999999999999999999998887
Q ss_pred HHh--cCceEEEecCCCCchhhccceEEEEcC
Q 000647 1334 AKD--MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1334 ~~~--~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
+.+ .|+|+|.|+||+++++..|.++.+..|
T Consensus 530 i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG 561 (591)
T KOG0057|consen 530 IMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNG 561 (591)
T ss_pred HHHhcCCCeEEEEEecchhHhcCCEEEEEECC
Confidence 654 599999999999999999999999443
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=521.86 Aligned_cols=255 Identities=20% Similarity=0.240 Sum_probs=218.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCCcccccccc
Q 000647 1040 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQL 1119 (1374)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~~l 1119 (1374)
......+..+......+.+...+.+|+.++.+..++ + ... ...++ ..++|+|+||+|.||+++++|+|+
T Consensus 292 ~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~--~----~~~--~~~~~---~~~~i~~~~v~f~y~~~~~il~~i 360 (592)
T PRK10790 292 GRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQ--Q----YGN--DDRPL---QSGRIDIDNVSFAYRDDNLVLQNI 360 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--c----CCC--CccCC---CCCeEEEEEEEEEeCCCCceeece
Confidence 344455566666677777888899999998754211 0 000 01111 247899999999998777899999
Q ss_pred eEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhccCCC
Q 000647 1120 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLS 1197 (1374)
Q Consensus 1120 s~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~ 1197 (1374)
||+|+|||++||||+||||||||+++|.|+|+|.+|+|.+||.|++++ +.+|++|+||||||++|+|||||||.++.+
T Consensus 361 ~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~ 440 (592)
T PRK10790 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD 440 (592)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999988 478899999999999999999999987632
Q ss_pred hhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhHHhh
Q 000647 1198 REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQLC 1276 (1374)
Q Consensus 1198 ~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~~~ 1276 (1374)
..|++++++++.++++++++++|+||||.+ +.|.+|||||||||||
T Consensus 441 -----------------------~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRial---------- 487 (592)
T PRK10790 441 -----------------------ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLAL---------- 487 (592)
T ss_pred -----------------------CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHH----------
Confidence 346778899999999999999999999997 4689999999999999
Q ss_pred hcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhc
Q 000647 1277 SINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFH 1354 (1374)
Q Consensus 1277 ~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~~i~~~ 1354 (1374)
||||+++|+|+|||||||+||.++|+.+.+.++. .++|+|+||||+++++..
T Consensus 488 --------------------------ARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~ 541 (592)
T PRK10790 488 --------------------------ARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEA 541 (592)
T ss_pred --------------------------HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhC
Confidence 9999999999999999999999999999886654 489999999999999999
Q ss_pred cceEEEEcCC
Q 000647 1355 SLELRLIDGE 1364 (1374)
Q Consensus 1355 ~~~l~l~~g~ 1364 (1374)
|+++.+.+|+
T Consensus 542 D~ii~l~~G~ 551 (592)
T PRK10790 542 DTILVLHRGQ 551 (592)
T ss_pred CEEEEEECCE
Confidence 9999996654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=551.29 Aligned_cols=457 Identities=18% Similarity=0.218 Sum_probs=303.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCC-CCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1374)
Q Consensus 165 ~yl~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~~-~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 243 (1374)
.++...+....-.+..+++|++.+++..+.+++|++++ .++..+|+++|++.+.+.+...+..++..++..+.... ++
T Consensus 970 ~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i-~i 1048 (1622)
T PLN03130 970 TLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFV-LI 1048 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34444444444446788899999999999999999865 56999999999999888776666555555443332211 12
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHH
Q 000647 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLE----GEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKA 319 (1374)
Q Consensus 244 ~~~~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~q~~e----~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~ 319 (1374)
.+++| +.+++++.+++....+. ..+.+...+..+.+ +..-.......++.++|+.|+.+++..+...+..+.
T Consensus 1049 ~~~~~-~~~~~~~pl~~~~~~~~---~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~ 1124 (1622)
T PLN03130 1049 GIVST-ISLWAIMPLLVLFYGAY---LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDN 1124 (1622)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHH
Confidence 22333 22222211111111111 11112222222222 222233444555788899999987655433333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-cccCC---ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 320 LTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAG-NLKPD---TSTLGRAKMLSNLRYHTSVIISLFQSLGT 395 (1374)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g-~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 395 (1374)
..+..........|.+....++ +..+.++......+.+ ..... ..+.|. ++ ++...+...+..
T Consensus 1125 ~~~~~~~~~~~~~wl~~~l~~~----~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~--~l-------s~~~~~~~~l~~ 1191 (1622)
T PLN03130 1125 NIRFTLVNMSSNRWLAIRLETL----GGLMIWLTASFAVMQNGRAENQAAFASTMGL--LL-------SYALNITSLLTA 1191 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccccccchhhhHHHHH--HH-------HHHHHHHHHHHH
Confidence 2221111111222333222221 1111111100001111 11000 011221 11 122333344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEE
Q 000647 396 LSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNL 474 (1374)
Q Consensus 396 ~~~~~~~l~~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~ 474 (1374)
+......++....+++|+.++++.+++.+...+. ......++..+.|+|+||+|.|+++ +++|+|+||+|++||++
T Consensus 1192 l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~---~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekV 1268 (1622)
T PLN03130 1192 VLRLASLAENSLNAVERVGTYIDLPSEAPLVIEN---NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKV 1268 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcccccccC---CCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEE
Confidence 5555566788889999999998765543210000 0011122345689999999999654 57999999999999999
Q ss_pred EEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCH
Q 000647 475 LITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH 548 (1374)
Q Consensus 475 ~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~ 548 (1374)
+||||||||||||+++|.|+++|++|+|.+||.+ .++|++|++|||+|.+|+|||||||.++. +.+|
T Consensus 1269 aIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-------~~td 1341 (1622)
T PLN03130 1269 GIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-------EHND 1341 (1622)
T ss_pred EEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-------CCCH
Confidence 9999999999999999999999999999999976 35789999999999999999999998753 2478
Q ss_pred HHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--
Q 000647 549 GGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA-- 623 (1374)
Q Consensus 549 ~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~-- 623 (1374)
++++++++.++++++++++|.+.++ +.|.+||||||||++|||||+++|+|+|||||||+||.++++.|.+.+++
T Consensus 1342 eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~ 1421 (1622)
T PLN03130 1342 ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 1421 (1622)
T ss_pred HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
Confidence 8999999999999999999977665 45779999999999999999999999999999999999999999999986
Q ss_pred cCCEEEEEccChhhHhhccEEEEecC
Q 000647 624 MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 624 ~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
.++|+|+|+||++++..+|+|++|++
T Consensus 1422 ~~~TvI~IAHRL~tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1422 KSCTMLIIAHRLNTIIDCDRILVLDA 1447 (1622)
T ss_pred CCCEEEEEeCChHHHHhCCEEEEEEC
Confidence 48999999999999999999999986
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=520.06 Aligned_cols=457 Identities=18% Similarity=0.220 Sum_probs=296.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHHHHHHH----HHhhHh---HHH
Q 000647 817 SIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLV----TGMVKP---SVD 888 (1374)
Q Consensus 817 ~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~~----~~~~~~---~~~ 888 (1374)
....+..++..+++.++...+++++++.+ .+|+.. ...+..+|++.|++.+...+...+ ..++.. ++.
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~----~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (588)
T PRK13657 75 LVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQR----GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPL 150 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666667766777777777754 555432 224568999999988764433322 222222 222
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhcCCcHHHHHHHH
Q 000647 889 ILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIE 968 (1374)
Q Consensus 889 ~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~~g~~~e~~~~~ 968 (1374)
+++..|.++++.. ..++++.++...+. +...+...+..+..+.+.........+.+.+..|+.+..+...+.
T Consensus 151 ~~~~~~~l~l~~l----~~~~l~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~ 222 (588)
T PRK13657 151 ALFMNWRLSLVLV----VLGIVYTLITTLVM----RKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALR 222 (588)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHH
Confidence 3455666555431 11111111111111 111111222222222222222222235577888887666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhh--hcccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000647 969 SRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME--HKGDRALVSTQGELAHALRFLASVVSQSFLAF 1046 (1374)
Q Consensus 969 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~--~~~~~~~~~~~~~~~~a~~~~a~~~~~~~~~~ 1046 (1374)
+.+.+..+......+...+...+..++. .+...+.++++.. ..+. .+.|.+...+ .++.+.+..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~v~~g~----lt~g~~~a~~----~l~~~~~~~l 289 (588)
T PRK13657 223 DIADNLLAAQMPVLSWWALASVLNRAAS-----TITMLAILVLGAALVQKGQ----LRVGEVVAFV----GFATLLIGRL 289 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCC----cCHHHHHHHH----HHHHHHHHHH
Confidence 5555444432222211111111111111 1111111222211 1121 1233333222 2223344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCCcccccccceEEEeCC
Q 000647 1047 GDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPG 1126 (1374)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~~ls~~I~~G 1126 (1374)
.++......+.....+++|+.++.+..++.+. ... ...++ ...+.|+|+||+|.||+.+++|+|+||+|+||
T Consensus 290 ~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~----~~~--~~~~~--~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G 361 (588)
T PRK13657 290 DQVVAFINQVFMAAPKLEEFFEVEDAVPDVRD----PPG--AIDLG--RVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPG 361 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC----CCC--CCCcC--CCCCeEEEEEEEEEeCCCCceecceeEEECCC
Confidence 56666666666666777777776543211100 000 00111 12467999999999987678999999999999
Q ss_pred CeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhccCCChhHHHHH
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELR 1204 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~ 1204 (1374)
|+++|||+||||||||+++|.|+|+|.+|+|.+||.|++++ ..+|+.|+||||||++|+|||||||.++.+
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~------- 434 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP------- 434 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC-------
Confidence 99999999999999999999999999999999999999998 467889999999999999999999987632
Q ss_pred HHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhHHhhhcccccc
Q 000647 1205 ALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQLCSINKISE 1283 (1374)
Q Consensus 1205 ~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~ 1283 (1374)
+..|++++++++.+++.++++++|+|+||.+ ++|.+|||||||||||
T Consensus 435 ---------------~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRial----------------- 482 (588)
T PRK13657 435 ---------------DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAI----------------- 482 (588)
T ss_pred ---------------CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHH-----------------
Confidence 2357778999999999999999999999987 4788999999999999
Q ss_pred hhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEE
Q 000647 1284 LDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLI 1361 (1374)
Q Consensus 1284 ~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~l~ 1361 (1374)
||||+++|+|+|||||||+||.++|+.+++.++. .++|+|+||||+++++.+|+++.+.
T Consensus 483 -------------------ARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~ 543 (588)
T PRK13657 483 -------------------ARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFD 543 (588)
T ss_pred -------------------HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEE
Confidence 9999999999999999999999999999886654 4899999999999999999999996
Q ss_pred cCC
Q 000647 1362 DGE 1364 (1374)
Q Consensus 1362 ~g~ 1364 (1374)
+|+
T Consensus 544 ~G~ 546 (588)
T PRK13657 544 NGR 546 (588)
T ss_pred CCE
Confidence 653
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=551.49 Aligned_cols=447 Identities=17% Similarity=0.176 Sum_probs=311.9
Q ss_pred HHHHHHHHHHHhhccccccccccCCC-CCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 000647 177 KIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWIL 255 (1374)
Q Consensus 177 ~~lt~~l~~~yl~~~~~y~~~~~d~~-~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l 255 (1374)
....+++|++.+++....+++|++.. .+...+|+++|++.+.+.+...+..++..++..+.. ..++.+.+|.+++.++
T Consensus 1034 ~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~-li~~~~~~~~~~~~~~ 1112 (1522)
T TIGR00957 1034 IQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGA-LIVILLATPIAAVIIP 1112 (1522)
T ss_pred HHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 35777888888999999999999764 468889999999999888776666555554433322 1222234443332222
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 256 AYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFG 335 (1374)
Q Consensus 256 ~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~ 335 (1374)
...++...+.++..+....+....++..+..-........+.++|+.|+.|+...++..+..+...+..........|++
T Consensus 1113 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 1192 (1522)
T TIGR00957 1113 PLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLA 1192 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111222222222222221222223333344555567889999999998776555555444433333233334444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh-cccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 336 MIQDFLLKYLGATVAVILIIEPFF-AGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIH 414 (1374)
Q Consensus 336 ~~~~~~~~~~~~~~~~il~~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~ 414 (1374)
....++. ..+.+++....++ .|. .+.|... . +..+...+..++..+......++....+++|+.
T Consensus 1193 ~~~~~~~----~~~~~~~~~~~v~~~~~-----~~~g~l~--~----~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~ 1257 (1522)
T TIGR00957 1193 VRLECVG----NCIVLFAALFAVISRHS-----LSAGLVG--L----SVSYSLQVTFYLNWLVRMSSEMETNIVAVERLK 1257 (1522)
T ss_pred HHHHHHH----HHHHHHHHHHHHHhcCC-----CCHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322221 1111111110111 122 2333221 1 122334455667777788888999999999999
Q ss_pred HHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCC
Q 000647 415 ELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~G 493 (1374)
++++.+++...... .......++..+.|+|+||++.|+++ +++|+|+||+|++||+++|||+||||||||+++|.|
T Consensus 1258 ~~~~~~~e~~~~~~---~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r 1334 (1522)
T TIGR00957 1258 EYSETEKEAPWQIQ---ETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR 1334 (1522)
T ss_pred HHhcCCCCcccccc---CCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 99866544221000 00111123345789999999999764 579999999999999999999999999999999999
Q ss_pred CCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcC
Q 000647 494 LWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRY 567 (1374)
Q Consensus 494 l~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~ 567 (1374)
+++|++|+|.+||.+ .++|++|++|||+|++|+|||||||.... ..++++++++++.++++++++++
T Consensus 1335 l~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-------~~sdeei~~al~~a~l~~~I~~l 1407 (1522)
T TIGR00957 1335 INESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-------QYSDEEVWWALELAHLKTFVSAL 1407 (1522)
T ss_pred CccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-------CCCHHHHHHHHHHcCcHHHHhhC
Confidence 999999999999976 35789999999999999999999997321 25788999999999999999999
Q ss_pred CCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhcc
Q 000647 568 PPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHD 642 (1374)
Q Consensus 568 ~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d 642 (1374)
|.+.++ +.|.+||||||||++|||||+++|+|+|||||||+||.++++.|.+.+++ .++|+|+|+||++.+..+|
T Consensus 1408 p~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~D 1487 (1522)
T TIGR00957 1408 PDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYT 1487 (1522)
T ss_pred ccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCC
Confidence 877655 45789999999999999999999999999999999999999999999986 4899999999999999999
Q ss_pred EEEEecC
Q 000647 643 VVLSLDG 649 (1374)
Q Consensus 643 ~il~l~~ 649 (1374)
+|++|++
T Consensus 1488 rIlVld~ 1494 (1522)
T TIGR00957 1488 RVIVLDK 1494 (1522)
T ss_pred EEEEEEC
Confidence 9999985
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-50 Score=503.33 Aligned_cols=507 Identities=12% Similarity=0.072 Sum_probs=338.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTR 186 (1374)
Q Consensus 107 l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l~~~ 186 (1374)
++..+++.++.....+..+.+.+.+++.....+ . ..+..++++ .++..+..|+...+..+...++..+++.+
T Consensus 20 ~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lR~~ 91 (555)
T TIGR01194 20 TAFSIALGLAGGLAIIALLASINNAIHEENFLG-Q---GSLFSFGGL----CLLALLFRIGADIFPAYAGMHIIANLRIA 91 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-c---hHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666677777777777665321000 0 111111122 22233445555556666666788899999
Q ss_pred HhhccccccccccCC-CCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 000647 187 YFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMM 265 (1374)
Q Consensus 187 yl~~~~~y~~~~~d~-~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~i~ 265 (1374)
.+++....++.++++ ..++..+|+++|++.+.+.+.. +..++..++..+ ....++.+++|.+++++++.+++..++.
T Consensus 92 l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~-~~~~~l~~~~~~L~li~l~~~~~~~~~~ 169 (555)
T TIGR01194 92 LCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFF-FCIAYLAYLSVPMFAITISAIIIGTAAQ 169 (555)
T ss_pred HHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999888765 4679999999999998877654 334444433322 2223344668877776655555444444
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 266 RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN--KEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLK 343 (1374)
Q Consensus 266 ~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~--~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1374)
.+..+...+...+.++..+++.........+.+.|+.|+.++ .+.+++++..++..+...+ ..............
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 246 (555)
T TIGR01194 170 LLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII---EILIFIAAENFGQL 246 (555)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 445555555555566666666666666667889999999854 3343333333333222211 11111111111110
Q ss_pred HHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 000647 344 YLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL 423 (1374)
Q Consensus 344 ~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~ 423 (1374)
.....++.+++ +++.. +..+.|. +++. ..+...++.++..+......++....+.+|+.++++.+++.
T Consensus 247 ~~~~~~~~~~~----~~~~~--~~~t~g~--l~a~----~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~ 314 (555)
T TIGR01194 247 LFFLLIGCALF----AAAMF--ASIDAAA--ISAF----VLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEP 314 (555)
T ss_pred HHHHHHHHHHH----HHHHh--cCCCHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 01111111111 11111 2234443 2222 22334455677778888889999999999999997642211
Q ss_pred cccCCCCCCCCCC--CccCCCCcEEEeeeEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC
Q 000647 424 SIEDKSPQRNGSR--NYFSEANYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL 497 (1374)
Q Consensus 424 ~~~~~~~~~~~~~--~~~~~~~~i~~~~v~~~~~~~----~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~ 497 (1374)
............. ......+.|+++||+|.|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p 394 (555)
T TIGR01194 315 EPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP 394 (555)
T ss_pred cccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 0000000000000 000123569999999999753 3699999999999999999999999999999999999999
Q ss_pred CccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCc
Q 000647 498 VSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEK 571 (1374)
Q Consensus 498 ~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 571 (1374)
++|+|.++|.+ .+++++++||+|+|++|++|+++|+ .+ ..+++++.++++.++++++++++|.+.
T Consensus 395 ~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~-~~--------~~~~~~~~~~~~~~~l~~~~~~lp~g~ 465 (555)
T TIGR01194 395 QEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE-GE--------HASLDNAQQYLQRLEIADKVKIEDGGF 465 (555)
T ss_pred CCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc-cc--------chhHHHHHHHHHHcCCchhhccccccc
Confidence 99999999865 2456889999999999999999995 11 246678899999999999999998776
Q ss_pred cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH----hcCCEEEEEccChhhHhhccEEEEe
Q 000647 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVAFHDVVLSL 647 (1374)
Q Consensus 572 ~~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~----~~~~TiI~vtH~~~~~~~~d~il~l 647 (1374)
++. .+||||||||++||||++++|+++|||||||+||+++++.+++.+. ..++|+|+||||++.++.+|+|+++
T Consensus 466 ~t~--~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l 543 (555)
T TIGR01194 466 STT--TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKL 543 (555)
T ss_pred CCc--ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEE
Confidence 553 6899999999999999999999999999999999999999987542 3589999999999999999999999
Q ss_pred cC
Q 000647 648 DG 649 (1374)
Q Consensus 648 ~~ 649 (1374)
++
T Consensus 544 ~~ 545 (555)
T TIGR01194 544 AA 545 (555)
T ss_pred EC
Confidence 85
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-52 Score=520.13 Aligned_cols=182 Identities=25% Similarity=0.290 Sum_probs=151.7
Q ss_pred eEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEE-----------eCCCC-c----c---
Q 000647 450 VKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA-----------KPGVG-S----D--- 510 (1374)
Q Consensus 450 v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~-----------~~g~~-~----~--- 510 (1374)
+++.|..+..+|++++ .+++||+++|+||||||||||+|+|+|+++|++|+|. ++|.+ . .
T Consensus 79 ~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~ 157 (590)
T PRK13409 79 PVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYN 157 (590)
T ss_pred ceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhc
Confidence 5667754456999999 9999999999999999999999999999999999997 67754 1 1
Q ss_pred ccccEEEEe----cCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHH
Q 000647 511 LNKEIFYVP----QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1374)
Q Consensus 511 ~~~~i~~v~----Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQR 586 (1374)
.+.++++.+ |.|.++.+|++|++.+. ...+++.++++.++|.+..++.+ .+||||||||
T Consensus 158 ~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~--------~~LSgGe~qr 220 (590)
T PRK13409 158 GEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDI--------SELSGGELQR 220 (590)
T ss_pred cCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHH
Confidence 112345444 45666778999999642 12346788999999988777765 5899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhc--CCEEEEEccChhhHh-hccEEEEecC
Q 000647 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 587 lalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~~--~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++|||||+++|+++||||||++||+.....+.+.+++. |+|+|+||||++.+. .+|+++++.+
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999998887654 899999999999885 6899999864
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=512.01 Aligned_cols=462 Identities=16% Similarity=0.184 Sum_probs=308.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHHHHHHHHH----hhH---
Q 000647 813 FIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTG----MVK--- 884 (1374)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~~~~----~~~--- 884 (1374)
+......++..++..++...+...+++++++.+ .+|+..+ ..+..+|++.|++.+.......+.. ++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~----~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~ 148 (576)
T TIGR02204 73 LGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNR----SGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIG 148 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566666666777777777777754 5554322 2456789999999886544332222 211
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhcCCcHHHH
Q 000647 885 PSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREK 964 (1374)
Q Consensus 885 ~~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~~g~~~e~ 964 (1374)
.++.++++.|.++.+... .+.++++.. ....+...+...+..+..+.+.........+.+++..++.+..+.
T Consensus 149 ~~~~~~~~~~~l~~~~l~----~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~ 220 (576)
T TIGR02204 149 GLIMMFITSPKLTSLVLL----AVPLVLLPI----LLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAER 220 (576)
T ss_pred HHHHHHHHhHHHHHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHH
Confidence 223344556666554321 111111111 111112223334444444444444445555678899988776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhh--hcccchhhhhhhHHHHHHHHHHHHHHHH
Q 000647 965 AMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME--HKGDRALVSTQGELAHALRFLASVVSQS 1042 (1374)
Q Consensus 965 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~--~~~~~~~~~~~~~~~~a~~~~a~~~~~~ 1042 (1374)
..+++.+++..+......+...++..+..++ ..+...+.++++.. ..+.. +.|.+.. +.....+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~v~~g~l----t~g~~~~----~~~~~~~~ 287 (576)
T TIGR02204 221 SRFGGAVEKAYEAARQRIRTRALLTAIVIVL-----VFGAIVGVLWVGAHDVIAGKM----SAGTLGQ----FVFYAVMV 287 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCC----CHHHHHH----HHHHHHHH
Confidence 6665555555443322222111111111111 01111111222111 11111 1222221 12223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCCc--ccccccce
Q 000647 1043 FLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ--KLLARQLT 1120 (1374)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~--~~vL~~ls 1120 (1374)
+..+..+......+.+...+.+|+.++.+..++.+. .....+..++ ..+.|+|+||+|.||+. +++|+|+|
T Consensus 288 ~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~----~~~~~~~~~~---~~~~i~~~~v~f~y~~~~~~~iL~~in 360 (576)
T TIGR02204 288 AGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA----PAHPKTLPVP---LRGEIEFEQVNFAYPARPDQPALDGLN 360 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC----CCCCccCCcC---CCceEEEEEEEEECCCCCCCcccccee
Confidence 556667777777888888999999998754221111 0000011111 24679999999999863 68999999
Q ss_pred EEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhccCCCh
Q 000647 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSR 1198 (1374)
Q Consensus 1121 ~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~ 1198 (1374)
|+|+|||+++|+|+||||||||+++|.|+|+|.+|+|.+||.|++++ ..+|++|+||||||++|+|||||||.++.+
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~- 439 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP- 439 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCC-
Confidence 99999999999999999999999999999999999999999999987 467788999999999999999999988643
Q ss_pred hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhHHhhh
Q 000647 1199 EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQLCS 1277 (1374)
Q Consensus 1199 ~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~~~~ 1277 (1374)
+..|++++++++.+++.++++++|+|+||.+ ++|.+||||||||||+
T Consensus 440 ---------------------~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~l----------- 487 (576)
T TIGR02204 440 ---------------------DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAI----------- 487 (576)
T ss_pred ---------------------CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHH-----------
Confidence 1246778999999999999999999999997 4789999999999999
Q ss_pred cccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhcc
Q 000647 1278 INKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHS 1355 (1374)
Q Consensus 1278 ~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~~i~~~~ 1355 (1374)
|||++++|+|+|||||||+||.++++.+++.++. .++|+|+||||++.++.+|
T Consensus 488 -------------------------aRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d 542 (576)
T TIGR02204 488 -------------------------ARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKAD 542 (576)
T ss_pred -------------------------HHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCC
Confidence 9999999999999999999999999988876654 5899999999999999999
Q ss_pred ceEEEEcCC
Q 000647 1356 LELRLIDGE 1364 (1374)
Q Consensus 1356 ~~l~l~~g~ 1364 (1374)
+++.+.+|+
T Consensus 543 ~vi~l~~g~ 551 (576)
T TIGR02204 543 RIVVMDQGR 551 (576)
T ss_pred EEEEEECCE
Confidence 999997654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=541.06 Aligned_cols=449 Identities=17% Similarity=0.213 Sum_probs=312.7
Q ss_pred HHHHHHHHHhhccccccccccCCC-CCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 000647 179 VTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAY 257 (1374)
Q Consensus 179 lt~~l~~~yl~~~~~y~~~~~d~~-~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~ 257 (1374)
..+++|++.+++..+.++.|+|.. .++..+|+++|++.+.+.+...+..++..++..+... .++.+.+|...+.++.+
T Consensus 1029 ~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~l-i~~~~~~p~~~~~~i~~ 1107 (1560)
T PTZ00243 1029 GSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSI-LVTSASQPFVLVALVPC 1107 (1560)
T ss_pred HHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 456888999999999999999864 5689999999999998887766655555444333222 22233444222211111
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 258 VLGAGTMMRNFSPAFGKLMSKEQQ----LEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWW 333 (1374)
Q Consensus 258 ~~~~~~i~~~~~~~l~~l~~~~q~----~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~ 333 (1374)
+ ++...+...+.+...+.++ ..+..-........+.++|+.|+.|+.+.+++.+..+...+..........|
T Consensus 1108 ~----~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w 1183 (1560)
T PTZ00243 1108 G----YLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRW 1183 (1560)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111222223333222222 2233334555556688999999999999887777777666555444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 334 FGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRI 413 (1374)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri 413 (1374)
.+....++...+...++++.+. ..+.+. +..+.|... .+..+...+...+..+......++....+++|+
T Consensus 1184 ~~~~~~~l~~~~~~~~~~~~~~-~~~~~~---~~~~~g~l~------~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi 1253 (1560)
T PTZ00243 1184 LGVRVEFLSNIVVTVIALIGVI-GTMLRA---TSQEIGLVS------LSLTMAMQTTATLNWLVRQVATVEADMNSVERL 1253 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhcc---CCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554443321111111111111 011111 112333211 112233445566677777778888889999999
Q ss_pred HHHHhhcccccccC--C-------------C------CCCCCCC---CccCCCCcEEEeeeEEEcCCC-CeeeeeeeEEE
Q 000647 414 HELMVISRELSIED--K-------------S------PQRNGSR---NYFSEANYIEFSGVKVVTPTG-NVLVENLTLKV 468 (1374)
Q Consensus 414 ~~~~~~~~~~~~~~--~-------------~------~~~~~~~---~~~~~~~~i~~~~v~~~~~~~-~~~l~~isl~i 468 (1374)
.++++..++.+... . . ....... ...+..+.|+|+||+|.|+++ +++|+|+||+|
T Consensus 1254 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I 1333 (1560)
T PTZ00243 1254 LYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRI 1333 (1560)
T ss_pred HHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEE
Confidence 99986432211000 0 0 0000000 011124579999999999765 45999999999
Q ss_pred eCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcc
Q 000647 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE 542 (1374)
Q Consensus 469 ~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~ 542 (1374)
++||+++|||+||||||||+++|+|+++|++|+|.+||.+ .++|++|+||||+|++|+|||||||....
T Consensus 1334 ~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~----- 1408 (1560)
T PTZ00243 1334 APREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL----- 1408 (1560)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-----
Confidence 9999999999999999999999999999999999999976 35789999999999999999999996431
Q ss_pred cCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccC-CCEEEEecCCCCCCHHHHHHHH
Q 000647 543 VEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHK-PKFAILDECTSAVTTDMEERFC 618 (1374)
Q Consensus 543 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~-p~illLDEptsaLD~~~~~~i~ 618 (1374)
..++++++++++.+++++++.++|.+.++ +.|.+|||||||||+|||||+++ |+|||||||||+||+++++.+.
T Consensus 1409 --~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq 1486 (1560)
T PTZ00243 1409 --EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ 1486 (1560)
T ss_pred --CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHH
Confidence 35788999999999999999999887665 45789999999999999999996 8999999999999999999999
Q ss_pred HHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 619 AKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 619 ~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+.+++ .++|+|+|+||++++..+|+|++|++
T Consensus 1487 ~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~ 1519 (1560)
T PTZ00243 1487 ATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDH 1519 (1560)
T ss_pred HHHHHHCCCCEEEEEeccHHHHHhCCEEEEEEC
Confidence 99876 48999999999999999999999986
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=469.46 Aligned_cols=245 Identities=23% Similarity=0.290 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCCc-ccccccceEEEeCCCeE
Q 000647 1051 ELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ-KLLARQLTFEIVPGKSL 1129 (1374)
Q Consensus 1051 ~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~-~~vL~~ls~~I~~Ge~v 1129 (1374)
.++.+..+.-.++.|+-++.+..++...+ . ...+.. +..++++||+|.||++ ++||+|+||++++||||
T Consensus 298 ~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~-----~---~~~~~~--~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkv 367 (573)
T COG4987 298 GAFQHLGQVIASARRLNDILDQKPEVTFP-----D---EQTATT--GQALELRNVSFTYPGQQTKALKNFNLTLAQGEKV 367 (573)
T ss_pred hhHHHhhHHHHHHHHHhhhccCCcccCCC-----c---cccCCc--cceeeeccceeecCCCccchhhccceeecCCCeE
Confidence 34444555566778877765433222111 0 111111 1279999999999985 59999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc--CCcccEEEecCCCCCCCcchHHHhccCCChhHHHHHHHh
Q 000647 1130 LVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALK 1207 (1374)
Q Consensus 1130 ~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~--~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~ 1207 (1374)
||+|||||||||++++|.|-|+|++|+|+..|.++..++ .+|..|++++|+|+||+||||+||....
T Consensus 368 AIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~----------- 436 (573)
T COG4987 368 AILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLAN----------- 436 (573)
T ss_pred EEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcC-----------
Confidence 999999999999999999999999999999999999995 4788999999999999999999996432
Q ss_pred hccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhHHhhhcccccchhh
Q 000647 1208 LHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDW 1286 (1374)
Q Consensus 1208 ~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~ 1286 (1374)
++.+||++|++++.|+|.++++..|+||+|.+ +.|..|||||||||||
T Consensus 437 -----------~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAl-------------------- 485 (573)
T COG4987 437 -----------PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLAL-------------------- 485 (573)
T ss_pred -----------CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHH--------------------
Confidence 24679999999999999999999999999998 4789999999999999
Q ss_pred hHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcC
Q 000647 1287 LIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1287 ~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
||+||++..+++|||||.+||..||+++.+++.+ .|.|+|.|+||+.-++..|+++.+.+|
T Consensus 486 ----------------AR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~G 548 (573)
T COG4987 486 ----------------ARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNG 548 (573)
T ss_pred ----------------HHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECC
Confidence 9999999999999999999999999998876644 599999999999999999999999766
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=542.58 Aligned_cols=463 Identities=16% Similarity=0.208 Sum_probs=306.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCC-CCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1374)
Q Consensus 165 ~yl~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~~-~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 243 (1374)
.+++..+......+..+++|++.+++....++.|++++ .++..+|+++|++.+.+.+...+..++..++..+.... ++
T Consensus 967 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i-~~ 1045 (1495)
T PLN03232 967 TFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFA-LI 1045 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 33444344444446888889999999999999998764 56999999999999888777766555544433222111 11
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHH
Q 000647 244 SYASPKYVFWILAYVLGAGTMMRNFSPAF-GKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1374)
Q Consensus 244 ~~~~~~l~~~~l~~~~~~~~i~~~~~~~l-~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~ 322 (1374)
.+.++ +.+++++.+++...+...+..+. ..+........+.+-........+.++|+.|+.+++..+...+..+...+
T Consensus 1046 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~ 1124 (1495)
T PLN03232 1046 GTVST-ISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIR 1124 (1495)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 12222 11111111111111111111111 11111112222222233444555788899999988665433333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-cccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF-AGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSR 401 (1374)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 401 (1374)
..........|.+..... ++..+.++......+ .+... ....++ ..+. .+..+...+...+..+.....
T Consensus 1125 ~~~~~~~~~~wl~~~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~~~--~~~g---~~~~~~~~~~~~l~~l~~~~~ 1194 (1495)
T PLN03232 1125 FTLANTSSNRWLTIRLET----LGGVMIWLTATFAVLRNGNAE-NQAGFA--STMG---LLLSYTLNITTLLSGVLRQAS 1194 (1495)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcccccc-ccccch--HHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 111111112222221111 111111111100011 12110 000111 1111 122334445566777777888
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCC
Q 000647 402 RLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPN 480 (1374)
Q Consensus 402 ~l~~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~s 480 (1374)
.++....+.+|+.++++.+++....... ......++..+.|+|+||+|.|+++ +++|+|+||+|++||+++|||||
T Consensus 1195 ~~~~~~~s~eRi~e~~~~~~e~~~~~~~---~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~S 1271 (1495)
T PLN03232 1195 KAENSLNSVERVGNYIDLPSEATAIIEN---NRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRT 1271 (1495)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccccC---CCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCC
Confidence 8888999999999998765543210000 0011112334679999999999644 67999999999999999999999
Q ss_pred CCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHH
Q 000647 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1374)
Q Consensus 481 GsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~ 554 (1374)
|||||||+++|.|+++|++|+|.+||.+ .++|++|+||||+|++|+|||||||.++. ..+|++++++
T Consensus 1272 GSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-------~~sdeei~~a 1344 (1495)
T PLN03232 1272 GAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-------EHNDADLWEA 1344 (1495)
T ss_pred CCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-------CCCHHHHHHH
Confidence 9999999999999999999999999976 35789999999999999999999998753 2578899999
Q ss_pred HHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEE
Q 000647 555 LKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1374)
Q Consensus 555 l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI 629 (1374)
++.++++++++++|.+.++ +.|.+||||||||++|||||+++|+|+|||||||+||.++++.|.+.+++ .++|+|
T Consensus 1345 l~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI 1424 (1495)
T PLN03232 1345 LERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTML 1424 (1495)
T ss_pred HHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999877665 45789999999999999999999999999999999999999999999986 489999
Q ss_pred EEccChhhHhhccEEEEecC
Q 000647 630 TISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 630 ~vtH~~~~~~~~d~il~l~~ 649 (1374)
+||||++++..+|+|++|++
T Consensus 1425 ~IAHRl~ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1425 VIAHRLNTIIDCDKILVLSS 1444 (1495)
T ss_pred EEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999986
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=497.64 Aligned_cols=191 Identities=25% Similarity=0.355 Sum_probs=156.0
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCccccccEEEEecCCC
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~~~~~~i~~v~Q~p~ 523 (1374)
.|+++|+++.| +++++++|+||++.+|++++|||+||||||||||+|+|...|++|+|..++. -+++|++|+|.
T Consensus 3 ~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----~~v~~l~Q~~~ 76 (530)
T COG0488 3 MITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----LRVGYLSQEPP 76 (530)
T ss_pred eEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----ceEEEeCCCCC
Confidence 58999999999 5789999999999999999999999999999999999999999999998752 37999999999
Q ss_pred CCcC-CHHHHhcCCCCCCccc------------C------------------CCCHHHHHHHHHHcCChhHHhcCCCCcc
Q 000647 524 TAVG-TLRDQLIYPLTSDQEV------------E------------------PLTHGGMVELLKNVDLEYLLDRYPPEKE 572 (1374)
Q Consensus 524 l~~~-Tv~eni~~~~~~~~~~------------~------------------~~~~~~~~~~l~~~~L~~~~~~~~~~~~ 572 (1374)
.... |+.+.+.-+....... + ...+.++..+|..+++.+. ++
T Consensus 77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~------ 149 (530)
T COG0488 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DR------ 149 (530)
T ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cC------
Confidence 8865 9999887654211000 0 0011233344444444333 11
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEccChhhHh-hccEEEEecC
Q 000647 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 573 ~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
--.+||||||.|++|||||+.+||+|+|||||++||.++...+-+.|++...|+|+||||..++. -|++|+.++.
T Consensus 150 --~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~ 225 (530)
T COG0488 150 --PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDR 225 (530)
T ss_pred --chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecC
Confidence 12589999999999999999999999999999999999999999999875449999999999986 6899999985
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-52 Score=467.36 Aligned_cols=332 Identities=22% Similarity=0.335 Sum_probs=263.2
Q ss_pred HHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHH
Q 000647 294 RTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRA 373 (1374)
Q Consensus 294 r~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~ 373 (1374)
.-|-|+||-|++|+.|.++..+...++.+..++....-.+++..++.++ -++...+.++++ |+ +.....+.|.-
T Consensus 405 llNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii-~lgll~gsll~a--Y~---Vt~q~ltVGDf 478 (790)
T KOG0056|consen 405 LLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGII-GLGLLAGSLLCA--YR---VTEQTLTVGDF 478 (790)
T ss_pred hhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHhhhhheee--ee---eeeccccccce
Confidence 3478999999999999865555444444433333322233444444432 122222222222 11 11122344432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEE
Q 000647 374 KMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVV 453 (1374)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 453 (1374)
. .+..+++.++.++..+...++.++.-.--+++++++++++++...... ........+.|+|+||+|.
T Consensus 479 V------lf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~------a~pl~~~~G~i~fsnvtF~ 546 (790)
T KOG0056|consen 479 V------LFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPG------APPLKVTQGKIEFSNVTFA 546 (790)
T ss_pred e------hHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCC------CCCccccCCeEEEEEeEEe
Confidence 2 234577888889988988999999888888999999887665431110 0111123678999999999
Q ss_pred cCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcC
Q 000647 454 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVG 527 (1374)
Q Consensus 454 ~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~ 527 (1374)
|..++++|+|+||++.||+.+++|||||+||||++|+|.++++.++|.|.+||+| ..+|++||.||||..+|+.
T Consensus 547 Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd 626 (790)
T KOG0056|consen 547 YDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND 626 (790)
T ss_pred cCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc
Confidence 9889999999999999999999999999999999999999999999999999987 3578999999999999999
Q ss_pred CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000647 528 TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1374)
Q Consensus 528 Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDE 604 (1374)
|+..||.|+.+. .+++++.++.+.+++++-+-.+|.++++ +.|-.||||||||+||||+++++|.|++|||
T Consensus 627 TI~yNIryak~~------AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDE 700 (790)
T KOG0056|consen 627 TILYNIRYAKPS------ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDE 700 (790)
T ss_pred eeeeheeecCCC------CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcc
Confidence 999999998654 5788999999999999999999998776 5677999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 605 CTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 605 ptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+|||||..+|+.|...+.+ .++|.|+|+||++++-++|.|+++++
T Consensus 701 ATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~ 747 (790)
T KOG0056|consen 701 ATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISN 747 (790)
T ss_pred hhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeC
Confidence 9999999999999999876 58999999999999999999999986
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-50 Score=517.29 Aligned_cols=461 Identities=15% Similarity=0.193 Sum_probs=306.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHHHHHHHHH----hh-
Q 000647 810 ASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTG----MV- 883 (1374)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~~~~----~~- 883 (1374)
+..++.....++..+++.+...++...+++++++.+ .||+..+. .+..+|+ +|++.+...+...+.. ++
T Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~----g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~ 265 (694)
T TIGR01846 191 FEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRV----GDTVARV-RELEQIRNFLTGSALTVVLDLLF 265 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCH----HHHHHHh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666667777777777777777764 67664322 3457888 5888776544322211 11
Q ss_pred --HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhcCCcH
Q 000647 884 --KPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGA 961 (1374)
Q Consensus 884 --~~~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~~g~~ 961 (1374)
..++.++++.|.++++.. ..++++.++...+.+. ..+...+..+..+.........-...+++..++.+.
T Consensus 266 ~~~~~~~l~~~~~~l~li~l----~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~ 337 (694)
T TIGR01846 266 VVVFLAVMFFYSPTLTGVVI----GSLVCYALLSVFVGPI----LRKRVEDKFERSAAATSFLVESVTGIETIKATATEP 337 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCH
Confidence 122334566777766532 1111122111111111 111111211122222222222233568888888766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhh--hcccchhhhhhhHHHHHHHHHHHHH
Q 000647 962 REKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME--HKGDRALVSTQGELAHALRFLASVV 1039 (1374)
Q Consensus 962 ~e~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~--~~~~~~~~~~~~~~~~a~~~~a~~~ 1039 (1374)
.+.+.+++.+.+..+......+...+......++. .+...+.++++.. ..+. .+.|.+.. +....
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~il~~g~~lv~~g~----it~G~lia----~~~l~ 404 (694)
T TIGR01846 338 QFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQ-----KLTFAILLWFGAHLVIGGA----LSPGQLVA----FNMLA 404 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHcCC----CCHHHHHH----HHHHH
Confidence 66665555555544433222211111111111111 1111122222221 1121 12233321 22333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCC-ccccccc
Q 000647 1040 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQ 1118 (1374)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~ 1118 (1374)
...+..+..+......+.+...+.+|+.++.+.+++... .. ....+ ...|.|+|+||+|.||+ .+++|+|
T Consensus 405 ~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-----~~--~~~~~--~~~~~i~~~~vsf~y~~~~~~il~~ 475 (694)
T TIGR01846 405 GRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS-----AG--LAALP--ELRGAITFENIRFRYAPDSPEVLSN 475 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC-----CC--CCCCC--CCCCeEEEEEEEEEcCCCCcccccc
Confidence 445566667777778888889999999998754321110 00 00111 13578999999999975 5789999
Q ss_pred ceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhccCC
Q 000647 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPL 1196 (1374)
Q Consensus 1119 ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~ 1196 (1374)
+||+|+|||+++|||+||||||||+++|.|+|+|.+|+|.+||+|++++ +.+|++|++|||||++|+|||||||.++.
T Consensus 476 i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~ 555 (694)
T TIGR01846 476 LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCN 555 (694)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999988 46788999999999999999999998753
Q ss_pred ChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhHHh
Q 000647 1197 SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQL 1275 (1374)
Q Consensus 1197 ~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~~ 1275 (1374)
+ +..+++++++++.+++.++++++|+||||.+ +.|.+||||||||+|+
T Consensus 556 ~----------------------~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~l--------- 604 (694)
T TIGR01846 556 P----------------------GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAI--------- 604 (694)
T ss_pred C----------------------CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHH---------
Confidence 2 2356778899999999999999999999997 4689999999999999
Q ss_pred hhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhh
Q 000647 1276 CSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPF 1353 (1374)
Q Consensus 1276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~~i~~ 1353 (1374)
|||++++|+|+|||||||+||.++|+.+.+.+++ .++|+|+||||+++++.
T Consensus 605 ---------------------------ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ 657 (694)
T TIGR01846 605 ---------------------------ARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA 657 (694)
T ss_pred ---------------------------HHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh
Confidence 9999999999999999999999999988876654 58999999999999999
Q ss_pred ccceEEEEcC
Q 000647 1354 HSLELRLIDG 1363 (1374)
Q Consensus 1354 ~~~~l~l~~g 1363 (1374)
.|+++.+.+|
T Consensus 658 ~d~ii~l~~G 667 (694)
T TIGR01846 658 CDRIIVLEKG 667 (694)
T ss_pred CCEEEEEeCC
Confidence 9999999554
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=543.28 Aligned_cols=190 Identities=18% Similarity=0.227 Sum_probs=150.0
Q ss_pred CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCC---ccEEEeCCCCc---cccccEEEEecCCCCCc-CCH
Q 000647 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVGS---DLNKEIFYVPQRPYTAV-GTL 529 (1374)
Q Consensus 457 ~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~---~G~I~~~g~~~---~~~~~i~~v~Q~p~l~~-~Tv 529 (1374)
++.+|+|+|+.+++||.++|+||||||||||+|+|+|+.+|+ +|+|.++|.+. ..++.++||+|++.++. .||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 356999999999999999999999999999999999999998 99999999651 23578999999986654 699
Q ss_pred HHHhcCCCCCCc---------c---cCC----CCHH------------------HHHHHHHHcCChhHHhcCCCCccccC
Q 000647 530 RDQLIYPLTSDQ---------E---VEP----LTHG------------------GMVELLKNVDLEYLLDRYPPEKEINW 575 (1374)
Q Consensus 530 ~eni~~~~~~~~---------~---~~~----~~~~------------------~~~~~l~~~~L~~~~~~~~~~~~~~~ 575 (1374)
+||+.|+..... + .+. ..+. ..+++++.+||++..+....+ ..
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~---~~ 333 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGD---EM 333 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCC---cc
Confidence 999987532110 0 000 0001 134577888887654432111 11
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccCh--hhHhhccEEEEecC
Q 000647 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRP--ALVAFHDVVLSLDG 649 (1374)
Q Consensus 576 g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~--~~~~~~d~il~l~~ 649 (1374)
...||||||||++|||+++.+|++++|||||+|||+.+...+.+.+++ .|+|+|+++|++ +....+|+|++|++
T Consensus 334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~ 413 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE 413 (1470)
T ss_pred ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC
Confidence 257999999999999999999999999999999999999999988764 488999999986 45578999999975
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=467.64 Aligned_cols=471 Identities=20% Similarity=0.256 Sum_probs=301.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHH----H
Q 000647 801 IGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTD----L 875 (1374)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~----l 875 (1374)
++..++..+.-.++......+..+++...+..|++.++++..+.. .|-+-. ......+.+++-++.+..- +
T Consensus 43 ~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~----~~g~~atl~~egve~l~~Y~~ryL 118 (559)
T COG4988 43 LILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQK----PAGSAATLALEGIEQLEPYYARYL 118 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCC----CcchHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455556666667777777788888888888776643 332211 1122345566666665433 4
Q ss_pred HHHHHHhhHhH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHH
Q 000647 876 SGLVTGMVKPS---VDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAE 952 (1374)
Q Consensus 876 ~~~~~~~~~~~---~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~ae 952 (1374)
+.++.+++.|+ +.++|+.|.-+++... ..++++.++++.....+.. ..+--+...++.+ ..+++++ ..+
T Consensus 119 Pq~~~~~ivp~~i~i~v~~~~w~aalIlli-t~PlIPlfMilvg~~a~~~---s~~~~~~~~~ls~---~FLD~Lr-GL~ 190 (559)
T COG4988 119 PQMFLSAIVPLLILIAIFFFNWAAALILLI-TAPLIPLFMILVGLAAKDA---SEKQFSALARLSG---HFLDRLR-GLE 190 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHH---HHHHHhc-ChH
Confidence 55555555554 4457889987776421 1222333332211111110 0000111122222 2345554 358
Q ss_pred HhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHH-Hhhhcc--cchhhhhhhHHH
Q 000647 953 SVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLY-AMEHKG--DRALVSTQGELA 1029 (1374)
Q Consensus 953 sIa~~~g~~~e~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~-~~~~~~--~~~~~~~~~~~~ 1029 (1374)
++.+|+....+.+.+.+.-.+.-+.....++-.++.....+|++. ...++..+| +..+.+ +.. ++
T Consensus 191 TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~-----lsiAlvAv~~g~~ll~~G~lt-------l~ 258 (559)
T COG4988 191 TLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAY-----LSIALVAVYIGFRLLGEGDLT-------LF 258 (559)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHccCCcc-------HH
Confidence 888888654443333221111111111222333333333333321 112222222 222222 111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCC-CCCCCCCCCCCCCEEEeeeEEe
Q 000647 1030 HALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGS-SQHKWNSTDYQDSISFSKLDII 1108 (1374)
Q Consensus 1030 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~-~~~~w~~~~~~g~I~f~~V~~~ 1108 (1374)
.++. +....-..|...-++-..+..-..-.++.+.++.+.+.+....+ .+. ....|.. +.+|.++|++|.
T Consensus 259 ~~l~-~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~-----~~~~~~~~~~~---~~ei~~~~l~~~ 329 (559)
T COG4988 259 AGLF-VLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPG-----SGEKAEVANEP---PIEISLENLSFR 329 (559)
T ss_pred HHHH-HHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCC-----CccccccccCC---CceeeecceEEe
Confidence 1111 11111223344444444444444446778888888754322111 111 0112211 345666699999
Q ss_pred CCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCc
Q 000647 1109 TPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLG 1186 (1374)
Q Consensus 1109 yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~G 1186 (1374)
||+++++++|+||+++|||+++|||+||||||||+++|.||.+|.+|+|.++|+|++++ ..+|+++++|||+||+|.|
T Consensus 330 y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g 409 (559)
T COG4988 330 YPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG 409 (559)
T ss_pred cCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999 4788999999999999999
Q ss_pred chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhc
Q 000647 1187 TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLG 1265 (1374)
Q Consensus 1187 TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrla 1265 (1374)
||||||.++.+ +.+|++++++++.++|.++++. |+|+||.+ +.|..|||||+||++
T Consensus 410 TireNi~l~~~----------------------~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRla 466 (559)
T COG4988 410 TIRENILLARP----------------------DASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLA 466 (559)
T ss_pred cHHHHhhccCC----------------------cCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHH
Confidence 99999986543 2467889999999999999999 99999997 578999999999999
Q ss_pred cccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEE
Q 000647 1266 MVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVT 1343 (1374)
Q Consensus 1266 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~ 1343 (1374)
+ ||||++++.++|||||||+||.++|+.+.+.+.+ .++|||+
T Consensus 467 L------------------------------------ARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~ 510 (559)
T COG4988 467 L------------------------------------ARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLV 510 (559)
T ss_pred H------------------------------------HHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEE
Confidence 9 9999999999999999999999999887765543 5899999
Q ss_pred ecCCCCchhhccceEEEEcC
Q 000647 1344 SSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1344 IaHRl~~i~~~~~~l~l~~g 1363 (1374)
||||+..+.-.|+++++.+|
T Consensus 511 itHrl~~~~~~D~I~vld~G 530 (559)
T COG4988 511 ITHRLEDAADADRIVVLDNG 530 (559)
T ss_pred EEcChHHHhcCCEEEEecCC
Confidence 99999999999999999443
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=501.99 Aligned_cols=460 Identities=16% Similarity=0.192 Sum_probs=295.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHHHH----HHHHHhhHh
Q 000647 811 SSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLS----GLVTGMVKP 885 (1374)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~----~~~~~~~~~ 885 (1374)
..++.+..+++..+.+.+...+++..+++++++.+ .||+..+ ..+..+|++.|++.+..... .++..++..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~----~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~ 124 (569)
T PRK10789 49 VYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHR----TGDLMARATNDVDRVVFAAGEGVLTLVDSLVMG 124 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCC----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555556666677777777888777764 5665322 24568999999998763322 222222221
Q ss_pred ---HHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhcCCcH
Q 000647 886 ---SVDI-LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGA 961 (1374)
Q Consensus 886 ---~~~~-~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~~g~~ 961 (1374)
++.+ +++.|.++++.. ..+++++++...+.+. ..+...+.++..+.+.......-.+.+++..|+.+.
T Consensus 125 ~~~~~~~~~~~~~~l~li~l----~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~ 196 (569)
T PRK10789 125 CAVLIVMSTQISWQLTLLAL----LPMPVMAIMIKRYGDQ----LHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLED 196 (569)
T ss_pred HHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccH
Confidence 1122 246777665531 1111111111111111 111111111111112111112223457777887655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhhh--cccchhhhhhhHHHHHHHHHHHHH
Q 000647 962 REKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEH--KGDRALVSTQGELAHALRFLASVV 1039 (1374)
Q Consensus 962 ~e~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~--~~~~~~~~~~~~~~~a~~~~a~~~ 1039 (1374)
.+.+.+++...+..+..... .+..+....+.. ....+...+.++++... .+. .+.|.+.... .+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~l~~g~~lv~~g~----lt~g~l~a~~----~~~ 263 (569)
T PRK10789 197 RQSALFAADAEDTGKKNMRV---ARIDARFDPTIY--IAIGMANLLAIGGGSWMVVNGS----LTLGQLTSFV----MYL 263 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCC----cCHHHHHHHH----HHH
Confidence 55544444333333222111 111111111100 00111111122222111 111 1223322221 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCC-ccccccc
Q 000647 1040 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQ 1118 (1374)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~ 1118 (1374)
.+....+..+......+.....+.+|+.++.+..++.++ .. ...+ ...+.|+|+||+|.||. .+++|+|
T Consensus 264 ~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~------~~--~~~~--~~~~~I~~~~v~~~y~~~~~~~l~~ 333 (569)
T PRK10789 264 GLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD------GS--EPVP--EGRGELDVNIRQFTYPQTDHPALEN 333 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC------CC--CCCC--CCCCcEEEEEEEEECCCCCCccccC
Confidence 233344455566667777888899999998754211110 00 0011 12568999999999986 4689999
Q ss_pred ceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhccCC
Q 000647 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPL 1196 (1374)
Q Consensus 1119 ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~ 1196 (1374)
+||+|+|||+++||||||||||||+++|.|+|+|.+|+|.+||.|++++ ..+|+++++|||+|++|+||+||||.++.
T Consensus 334 i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~ 413 (569)
T PRK10789 334 VNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGR 413 (569)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999887 46788999999999999999999998763
Q ss_pred ChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhHHh
Q 000647 1197 SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQL 1275 (1374)
Q Consensus 1197 ~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~~ 1275 (1374)
+ +..|++++++++.+++++++.++|+|+||.+ ++|.+||||||||+||
T Consensus 414 ~----------------------~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~l--------- 462 (569)
T PRK10789 414 P----------------------DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISI--------- 462 (569)
T ss_pred C----------------------CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHH---------
Confidence 2 1346678888999999999999999999997 4788999999999999
Q ss_pred hhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhh
Q 000647 1276 CSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPF 1353 (1374)
Q Consensus 1276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~~i~~ 1353 (1374)
|||++++|+|+|||||||+||.++++.+.+.+++ .++|+|+||||+++++.
T Consensus 463 ---------------------------ARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~ 515 (569)
T PRK10789 463 ---------------------------ARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTE 515 (569)
T ss_pred ---------------------------HHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHc
Confidence 9999999999999999999999999988876654 58999999999999999
Q ss_pred ccceEEEEcC
Q 000647 1354 HSLELRLIDG 1363 (1374)
Q Consensus 1354 ~~~~l~l~~g 1363 (1374)
.|+++.+.+|
T Consensus 516 ~d~i~~l~~G 525 (569)
T PRK10789 516 ASEILVMQHG 525 (569)
T ss_pred CCEEEEEeCC
Confidence 9999999654
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-49 Score=495.41 Aligned_cols=457 Identities=16% Similarity=0.193 Sum_probs=298.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cceeeecCCCCCCCCccchHHHHHHHHHHHHHHHHHh----hH---hHH
Q 000647 816 PSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGM----VK---PSV 887 (1374)
Q Consensus 816 ~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~-~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~~~~~~----~~---~~~ 887 (1374)
+....+..++..+.+.++...+++++++.+ .||+..+ ..+..+|++.|++.+...+...+..+ +. .++
T Consensus 74 ~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~----~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~ 149 (585)
T TIGR01192 74 VLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRG----TSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIP 149 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556666677777778888888764 6776432 24568899999988765443333222 21 123
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhh-hHHHHHHHHhHHHhhhcCCcHHHHHH
Q 000647 888 DILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTF-RFMHERLRAHAESVAFFGGGAREKAM 966 (1374)
Q Consensus 888 ~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~-r~~~~~l~~~aesIa~~~g~~~e~~~ 966 (1374)
.+++..|.++++.. .+++++.++...+.+ ...+......+..+.+ ....|.+ .+.+++..|+.+..+.+.
T Consensus 150 ~l~~~~~~l~li~l----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~e~l-~gi~~ik~~~~~~~~~~~ 220 (585)
T TIGR01192 150 TAFAMDWRLSIVLM----VLGILYILIAKLVMQ----RTKNGQAAVEHHYHNVFKHVSDSI-SNVSVVHSYNRIEAETSA 220 (585)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHhcccHHHHHH
Confidence 34456777766542 111122221111111 1111111111111111 1222222 356788888876666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhh--hcccchhhhhhhHHHHHHHHHHHHHHHHHH
Q 000647 967 IESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME--HKGDRALVSTQGELAHALRFLASVVSQSFL 1044 (1374)
Q Consensus 967 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~--~~~~~~~~~~~~~~~~a~~~~a~~~~~~~~ 1044 (1374)
+++..++..+......+...+...+..++ ..+...+.++++.. ..+.. +.|.+.... ......+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~g~~~v~~g~i----t~g~l~a~~----~~~~~l~~ 287 (585)
T TIGR01192 221 LKQFTNNLLSAQYPVLDWWALASGLNRMA-----STISMMCILVIGTVLVIKGEL----SVGEVIAFI----GFANLLIG 287 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCC----CHHHHHHHH----HHHHHHHH
Confidence 55555444433222222111111111111 11111111222211 11111 223322211 22233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCCcccccccceEEEe
Q 000647 1045 AFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIV 1124 (1374)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~~ls~~I~ 1124 (1374)
.+..+......+.+...+++|+.++.+..++.++ .. .+..++ ...+.|+|+||+|.||+.+++|+|+||+|+
T Consensus 288 ~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~-----~~-~~~~~~--~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~ 359 (585)
T TIGR01192 288 RLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE-----PA-DAPELP--NVKGAVEFRHITFEFANSSQGVFDVSFEAK 359 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC-----Cc-cCCCCC--CCCCeEEEEEEEEECCCCCccccceeEEEc
Confidence 5555556666667777888898887653211100 00 011111 125679999999999876789999999999
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhccCCChhHHH
Q 000647 1125 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAE 1202 (1374)
Q Consensus 1125 ~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~ 1202 (1374)
+||+++||||||||||||+++|.|+|+|.+|+|.+||.|++++ +.+|+.+++|||||++|+||+||||.++.+
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~----- 434 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE----- 434 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC-----
Confidence 9999999999999999999999999999999999999999887 357888999999999999999999987632
Q ss_pred HHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhHHhhhcccc
Q 000647 1203 LRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQLCSINKI 1281 (1374)
Q Consensus 1203 ~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~ 1281 (1374)
+..|++++++++.+++.+++.++|+|+||.+ +++..|||||||||+|
T Consensus 435 -----------------~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~l--------------- 482 (585)
T TIGR01192 435 -----------------GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAI--------------- 482 (585)
T ss_pred -----------------CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHH---------------
Confidence 1246667888888999999999999999987 4788999999999999
Q ss_pred cchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEE
Q 000647 1282 SELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELR 1359 (1374)
Q Consensus 1282 ~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~ 1359 (1374)
||||+++|+++|||||||+||.++++.+++.+++ .++|+|+||||+++++.+|+++.
T Consensus 483 ---------------------ARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~ 541 (585)
T TIGR01192 483 ---------------------ARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLF 541 (585)
T ss_pred ---------------------HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEE
Confidence 9999999999999999999999999998876654 58999999999999999999999
Q ss_pred EEcCC
Q 000647 1360 LIDGE 1364 (1374)
Q Consensus 1360 l~~g~ 1364 (1374)
|.+|+
T Consensus 542 l~~G~ 546 (585)
T TIGR01192 542 LDQGR 546 (585)
T ss_pred EECCE
Confidence 96653
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=490.08 Aligned_cols=460 Identities=19% Similarity=0.210 Sum_probs=298.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeecCCCCCCCCccchHHHHHHHHHHHHH-HHHHhh--
Q 000647 807 QSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSG-LVTGMV-- 883 (1374)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~lr~~~f~~~~~~~~~~~d~~~ri~~D~~~l~~~l~~-~~~~~~-- 883 (1374)
..++..++.....++..+++.++..++..+++++.++.+. . .. .+...+++.|++.+...+.. ....++
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~--~---~~---~~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 126 (544)
T TIGR01842 55 LYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATL--R---RG---KIDGLQALRDLDQLRQFLTGPGLFAFFDA 126 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--c---Cc---cchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3334445555555666667777777777777777776542 1 11 12367888999887654433 111111
Q ss_pred ----HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCccccccHHHHhhhhhhhHHHHHHHHhHHHhhhcCC
Q 000647 884 ----KPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGG 959 (1374)
Q Consensus 884 ----~~~~~~~~~~w~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~r~~~~~l~~~aesIa~~~g 959 (1374)
..++.++++.|.++.+.. ..+++++++...+.+. ..+...+..+..+.........-.+.+++..|+.
T Consensus 127 ~~~~~~~~~l~~~~~~l~li~l----~~~~l~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~ 198 (544)
T TIGR01842 127 PWMPIYLLVCFLLHPWIGILAL----GGAVVLVGLALLNNRA----TKKPLKEATEASIRANNLADSALRNAEVIEAMGM 198 (544)
T ss_pred HHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCc
Confidence 112334556777665531 1111111111111111 1111111122222222222222345678888886
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHHHHHHHhh--hcccchhhhhhhHHHHHHHHHHH
Q 000647 960 GAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME--HKGDRALVSTQGELAHALRFLAS 1037 (1374)
Q Consensus 960 ~~~e~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~--~~~~~~~~~~~~~~~~a~~~~a~ 1037 (1374)
+..+.+.+++.+++..+......+..-.......++. .+...+.++++.. ..+. .+.|.+...+ .
T Consensus 199 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~l~~~g~----it~g~l~a~~----~ 265 (544)
T TIGR01842 199 MGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR-----IVLQSLVLGLGAYLAIDGE----ITPGMMIAGS----I 265 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCC----CCHHHHHHHH----H
Confidence 6665555555555444333222111111111110110 0111111222211 1111 1233332222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCC-ccccc
Q 000647 1038 VVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLA 1116 (1374)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL 1116 (1374)
+..+.+..+..+......+.+...+.+|+.++.+..++..+ . ...+ ...+.|+|+||+|.||+ .+++|
T Consensus 266 ~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~-----~----~~~~--~~~~~i~~~~v~~~y~~~~~~~l 334 (544)
T TIGR01842 266 LVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP-----A----MPLP--EPEGHLSVENVTIVPPGGKKPTL 334 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC-----C----CCCC--CCCCeEEEEEEEEEcCCCCcccc
Confidence 33345556667777777888888999999998754321110 0 0111 12468999999999986 46899
Q ss_pred ccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhcc
Q 000647 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIY 1194 (1374)
Q Consensus 1117 ~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~y 1194 (1374)
+|+||+|+|||+++||||||||||||+++|.|+|+|.+|+|.+||.|++++ +.+|+++++|||||++|+||+||||.+
T Consensus 335 ~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~ 414 (544)
T TIGR01842 335 RGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIAR 414 (544)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhc
Confidence 999999999999999999999999999999999999999999999999887 467889999999999999999999975
Q ss_pred CCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhH
Q 000647 1195 PLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLI 1273 (1374)
Q Consensus 1195 p~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~ 1273 (1374)
+.+ +..+++++++++.++++++++++|+|+||.+ ++|.+||||||||+|+
T Consensus 415 ~~~----------------------~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~l------- 465 (544)
T TIGR01842 415 FGE----------------------NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIAL------- 465 (544)
T ss_pred cCC----------------------CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHH-------
Confidence 421 1346678888999999999999999999997 4689999999999999
Q ss_pred HhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCc
Q 000647 1274 QLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPAL 1350 (1374)
Q Consensus 1274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~---~~~TvI~IaHRl~~ 1350 (1374)
|||++++|+++|||||||+||.++++.+.+.+++ .++|+|+||||+++
T Consensus 466 -----------------------------ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~ 516 (544)
T TIGR01842 466 -----------------------------ARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSL 516 (544)
T ss_pred -----------------------------HHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH
Confidence 9999999999999999999999999988876653 47999999999999
Q ss_pred hhhccceEEEEcCC
Q 000647 1351 IPFHSLELRLIDGE 1364 (1374)
Q Consensus 1351 i~~~~~~l~l~~g~ 1364 (1374)
++..|+++.|.+|+
T Consensus 517 ~~~~d~i~~l~~G~ 530 (544)
T TIGR01842 517 LGCVDKILVLQDGR 530 (544)
T ss_pred HHhCCEEEEEECCE
Confidence 99999999996543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=481.23 Aligned_cols=497 Identities=15% Similarity=0.158 Sum_probs=322.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 107 LLALVGIVVLRTALSNRL-AKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHT 185 (1374)
Q Consensus 107 l~~~~~l~~~~t~ls~~~-~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l~~ 185 (1374)
++..+++.++...+.+.+ +.+.+.++|.+.. +...+ ..+.+++++..++. |+...+.......+..+++.
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~lR~ 85 (547)
T PRK10522 15 FISVMALSLASAALGIGLIAFINQRLIETADT-SLLVL----PEFLGLLLLLMAVT----LGSQLALTTLGHHFVYRLRS 85 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cchHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666664 5666777776532 21111 11222222222223 33444444444457778888
Q ss_pred HHhhccccccccccCC-CCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 000647 186 RYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTM 264 (1374)
Q Consensus 186 ~yl~~~~~y~~~~~d~-~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~i 264 (1374)
+++++....+..++++ ..++..+|+++|++.+...+.. +..++..++..+.+.+ ++.+++|.+++++++..++..++
T Consensus 86 ~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~~~~-~l~~~~~~l~li~l~~~~~~~~i 163 (547)
T PRK10522 86 EFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTLGSAA-YLAWLSPKMLLVTAIWMAVTIWG 163 (547)
T ss_pred HHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHH
Confidence 8889888888877765 4679999999999988765443 3334444443333333 23456887777766655555555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000647 265 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVV-LHDHWWFGMIQDFLLK 343 (1374)
Q Consensus 265 ~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~ 343 (1374)
..++.++..+...+.++..+++........++.++++ ++++..+ +.+.++|++..+..++. .+..........+...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (547)
T PRK10522 164 GFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAE-YVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNI 241 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHH-HHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 5566777766666666666776666666666777775 4444322 12233444433332221 1111111111111000
Q ss_pred HHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 000647 344 YLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL 423 (1374)
Q Consensus 344 ~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~ 423 (1374)
.....++.++ ++.+... ..+.+...++. ..+.....++..+......+.....+.+|+.++++.+++.
T Consensus 242 ~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~------~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~ 309 (547)
T PRK10522 242 MMLGAIGLVF----YMANSLG--WADTNVAATYS------LTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKA 309 (547)
T ss_pred HHHHHHHHHH----HHHHHhh--cCChHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 0000111111 1222211 11122111111 1122234567777777888899999999999986533221
Q ss_pred cccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEE
Q 000647 424 SIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503 (1374)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~ 503 (1374)
+... . ...+..+.++++||+|.||+++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 310 ~~~~------~--~~~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~ 381 (547)
T PRK10522 310 EFPR------P--QAFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 (547)
T ss_pred cccc------c--cccCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 1000 0 0011124699999999998767899999999999999999999999999999999999999999999
Q ss_pred eCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCC
Q 000647 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGD 577 (1374)
Q Consensus 504 ~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~ 577 (1374)
++|.+ .+++++++||||+|++|++|+++| +. ..+++++.++++.+++++..+. +.+. ..|.
T Consensus 382 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~-------~~~~~~~~~~~~~~~l~~~~~~-~~~~--~~G~ 448 (547)
T PRK10522 382 LDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GK-------PANPALVEKWLERLKMAHKLEL-EDGR--ISNL 448 (547)
T ss_pred ECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cC-------chHHHHHHHHHHHcCCchhhhc-cccC--CCCC
Confidence 99975 246789999999999999999998 11 2456778889999999876653 2211 1267
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHhhccEEEEecC
Q 000647 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 578 ~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+||||||||++||||++++|+++|||||||+||+++++.+++.+.+ .++|+|+||||++.++.+|+|+++++
T Consensus 449 ~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 524 (547)
T PRK10522 449 KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRN 524 (547)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999887642 48999999999999999999999986
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=520.91 Aligned_cols=461 Identities=17% Similarity=0.214 Sum_probs=314.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCC-CCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1374)
Q Consensus 165 ~yl~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~~-~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 243 (1374)
.++...+..+.-.+..+++|.+.+++...-+++|++.. .+...+|+++|++.+.+.+...+..++..++..+.+.+. +
T Consensus 942 ~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~-i 1020 (1490)
T TIGR01271 942 GFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFV-V 1020 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 33444444444456888899999999999999988764 568899999999999888877766666555544433322 2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 000647 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 323 (1374)
Q Consensus 244 ~~~~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~ 323 (1374)
.+.+|.+++.++..+++...+..+..+....+........+...........+.++|+.|+.|+.+.+++.+..+...+.
T Consensus 1021 ~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~ 1100 (1490)
T TIGR01271 1021 SVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTAN 1100 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 34455433322221111111111122221112111112222233344445557899999999999987777776654443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 324 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1374)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 403 (1374)
+........|++....++...+...+.+ +. +.... .+.+.+|.. + .+...+...+..+......+
T Consensus 1101 ~~~~~~~~~wl~~~~~~i~~~~~~~~~~-l~---~~~~~--~~~g~~g~~--l-------~~~~~l~~~l~~l~~~~~~l 1165 (1490)
T TIGR01271 1101 WFLYLSTLRWFQMRIDIIFVFFFIAVTF-IA---IGTNQ--DGEGEVGII--L-------TLAMNILSTLQWAVNSSIDV 1165 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHhc--CCccHHHHH--H-------HHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444333321111111111 11 11111 111223221 1 12223334455555666778
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCC-----------CCCCCCCccCCCCcEEEeeeEEEcCC-CCeeeeeeeEEEeCC
Q 000647 404 NRLSGYADRIHELMVISRELSIEDKSP-----------QRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPG 471 (1374)
Q Consensus 404 ~~~~~~~~Ri~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~isl~i~~G 471 (1374)
.....+++|+.++.+.+++........ ........++..+.|+|+||++.|++ .+++|+|+||+|++|
T Consensus 1166 e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~G 1245 (1490)
T TIGR01271 1166 DGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGG 1245 (1490)
T ss_pred HHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCC
Confidence 888889999999987654432110000 00000112344568999999999975 478999999999999
Q ss_pred CEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCC
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP 545 (1374)
Q Consensus 472 e~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~ 545 (1374)
|+++|+|+||||||||+++|+|+++ .+|+|.+||.+ .++|++|+||||+|++|+||||+||.... .
T Consensus 1246 ekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-------~ 1317 (1490)
T TIGR01271 1246 QRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-------Q 1317 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-------C
Confidence 9999999999999999999999997 79999999976 35788999999999999999999995421 3
Q ss_pred CCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 000647 546 LTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622 (1374)
Q Consensus 546 ~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~ 622 (1374)
.+|++++++|+.++|.+++.++|.+.++ +.|.+||||||||++|||||+++|+|||||||||+||.++++.|++.++
T Consensus 1318 ~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~ 1397 (1490)
T TIGR01271 1318 WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLK 1397 (1490)
T ss_pred CCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 5789999999999999999999876554 4577899999999999999999999999999999999999999999998
Q ss_pred h--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 623 A--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 623 ~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+ .++|+|+||||++.+..+|+|++|++
T Consensus 1398 ~~~~~~TvI~IaHRl~ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1398 QSFSNCTVILSEHRVEALLECQQFLVIEG 1426 (1490)
T ss_pred HHcCCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 6 48999999999999999999999986
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=445.65 Aligned_cols=247 Identities=22% Similarity=0.318 Sum_probs=211.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCCcccccccceEEEeCCCeEEE
Q 000647 1052 LHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLV 1131 (1374)
Q Consensus 1052 ~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~I 1131 (1374)
.++++-+...-+++.+++.+...+... ....++-|| ...|.|.|+||+|.|...+++|+|+||+|++|++++|
T Consensus 222 ~Yrei~q~ltdme~mfdLl~~~~~v~d-----~pda~~L~~--~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAi 294 (497)
T COG5265 222 SYREIRQALTDMEKMFDLLDVEAEVSD-----APDAPPLWP--VRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAI 294 (497)
T ss_pred HHHHHHHhhhhHHHHHHhhccchhhcc-----CCCCccccc--cccceEEEEEEEeeccccchhhcCccccccCccEEEE
Confidence 344444444556666666554322211 111234454 2368999999999998889999999999999999999
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhccCCChhHHHHHHHhhc
Q 000647 1132 TGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLH 1209 (1374)
Q Consensus 1132 vG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~ 1209 (1374)
||+||+||||+.++|+||||+.+|+|++||+||+++ +.+|+.|++||||.+||+.|+..||.|+.+
T Consensus 295 Vg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~------------ 362 (497)
T COG5265 295 VGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP------------ 362 (497)
T ss_pred EeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc------------
Confidence 999999999999999999999999999999999998 678999999999999999999999999854
Q ss_pred cCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhHHhhhcccccchhhhH
Q 000647 1210 GKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLI 1288 (1374)
Q Consensus 1210 ~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~ 1288 (1374)
...+++++.+.+..+++++++.+|+||||.+ ++|-.||||||||+||
T Consensus 363 ----------~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvai---------------------- 410 (497)
T COG5265 363 ----------DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAI---------------------- 410 (497)
T ss_pred ----------cccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHH----------------------
Confidence 1345567777788888889999999999998 5888999999999999
Q ss_pred hhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcC
Q 000647 1289 YCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1289 ~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
||++|++|+||+|||||||||..+|+++|+.+++ .|+|.++||||++||-..|.+++|.+|
T Consensus 411 --------------ar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g 473 (497)
T COG5265 411 --------------ARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNG 473 (497)
T ss_pred --------------HHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCC
Confidence 9999999999999999999999999999987764 699999999999999999999999765
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=431.46 Aligned_cols=502 Identities=19% Similarity=0.216 Sum_probs=323.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 109 ALVGIVVLRTALSNRLAKVQGFLFRAA-FLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRY 187 (1374)
Q Consensus 109 ~~~~l~~~~t~ls~~~~~~~~~~~~al-~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l~~~y 187 (1374)
.+.+++.+-..+.+..|..-=+.||-. -.++.+....+ .++++...++..+..+++.++-++.-.++...+..+.
T Consensus 27 ~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~L----tvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v 102 (580)
T COG4618 27 GVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVML----TVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPV 102 (580)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 334444445556666677667777754 46677764443 2233333344555666666666666566666665555
Q ss_pred hhccccccccccCCCCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHH
Q 000647 188 FENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYT--WRLCSYASPKYVFWILAYVLGAGTMM 265 (1374)
Q Consensus 188 l~~~~~y~~~~~d~~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~--~~l~~~~~~~l~~~~l~~~~~~~~i~ 265 (1374)
|.....-+.. .+..-..-..-.|.+++...+..- -+.+++|.-++- ..+++.+.|.+.++.++.+++... +
T Consensus 103 ~~a~~~~~l~---~~~~g~~~Q~LrDL~qvR~Fltg~---g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~-l 175 (580)
T COG4618 103 FAASFSAPLL---RRGSGDGLQPLRDLDQVRQFLTGT---GLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVV-L 175 (580)
T ss_pred HHHHHhhHHh---hcCCCccccchhhHHHHHHHHcCC---CcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 5443211111 111111233456887765554431 222333322210 011112344443333322221111 1
Q ss_pred HHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 266 RNFSPAFGKL-MSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKY 344 (1374)
Q Consensus 266 ~~~~~~l~~l-~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1374)
.++.-.+.+. ..+..+......+.....+.|+|.|++.+....-.++|.+..........+.-.....++.....+-..
T Consensus 176 a~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~ 255 (580)
T COG4618 176 ALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMA 255 (580)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 1222111111 111222222233445556669999999999999999998887776665544322222222222222111
Q ss_pred HHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 000647 345 LGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVII-SLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL 423 (1374)
Q Consensus 345 ~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~ 423 (1374)
+.+ .++....|.. ..+..|.|. +++ .+++. -...++-..+..++.+.....+.+|+.+++...+..
T Consensus 256 lQs---~iLg~GA~Lv---i~ge~t~G~--mIA-----~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~ 322 (580)
T COG4618 256 LQS---AVLGLGAWLV---IKGEITPGM--MIA-----GSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAA 322 (580)
T ss_pred HHH---HHHhcceeeE---EcCcCCcch--hhH-----HHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 111 1111111110 112234442 221 11111 233455556677888888888999999998765543
Q ss_pred cccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEE
Q 000647 424 SIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502 (1374)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I 502 (1374)
.. .. ..+..++.+.++++++..|+. +++++++||++++||.++|+||||||||||.|+|.|.|+|.+|.|
T Consensus 323 ~~---~m------~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~V 393 (580)
T COG4618 323 AE---RM------PLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV 393 (580)
T ss_pred cC---CC------CCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcE
Confidence 21 00 011125689999999988764 689999999999999999999999999999999999999999999
Q ss_pred EeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCcccc--
Q 000647 503 AKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN-- 574 (1374)
Q Consensus 503 ~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~-- 574 (1374)
.+||.+ +++.++|||+||+--+|.|||.|||.-... +.+++++.++.+..+.++++-++|.++++.
T Consensus 394 RLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~------~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG 467 (580)
T COG4618 394 RLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGE------EADPEKVIEAARLAGVHELILRLPQGYDTRIG 467 (580)
T ss_pred EecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccc------cCCHHHHHHHHHHcChHHHHHhCcCCccCccC
Confidence 999965 345689999999999999999999975322 356778999999999999999999998885
Q ss_pred -CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH---HhcCCEEEEEccChhhHhhccEEEEecC
Q 000647 575 -WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV---RAMGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 575 -~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l---~~~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
-|..|||||||||++|||||.+|.+++||||-|+||.+.|..+.+.+ |+.|.|+|+||||++.+..+|+|++|++
T Consensus 468 ~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~ 546 (580)
T COG4618 468 EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQD 546 (580)
T ss_pred CCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecC
Confidence 46799999999999999999999999999999999999999998876 4579999999999999999999999986
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=486.70 Aligned_cols=471 Identities=21% Similarity=0.268 Sum_probs=345.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCC-CChhHHHHccHHHHHHHHHHHH
Q 000647 147 ISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRI-THPEQRLASDVPRFCSELSELV 225 (1374)
Q Consensus 147 l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~~~-~npdqRit~Di~~~~~~~~~l~ 225 (1374)
+..+.+++++.+++..+..+.-...+++ -.+++|++.+++..+=+++|||..+ +-..+|.+.|++.+...+...+
T Consensus 861 ~~vY~~l~~~~~~~~~~rs~~~~~~~l~----aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~ 936 (1381)
T KOG0054|consen 861 LGVYALLGVASSLLTLLRSFLFAKGGLK----ASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTL 936 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHH
Confidence 3445555565555555555555556653 6678888888999999999998754 5788899999999988877777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHH
Q 000647 226 QDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQ----LHSRLRTHAESIA 301 (1374)
Q Consensus 226 ~~~l~~~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~----~~~~ir~~~E~Ia 301 (1374)
..++..++..+. ...+..+..|..++.++.. .++..++.+.+.+...+..++|+.-|. ....-..+.-+|+
T Consensus 937 ~~~~~~~~~~l~-~~~vi~~~~P~fli~~~pl----~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIR 1011 (1381)
T KOG0054|consen 937 EFFLQSLLNVLG-ILVVISYVTPWFLIAIIPL----GVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIR 1011 (1381)
T ss_pred HHHHHHHHHHHH-HHHHhhHHhHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceee
Confidence 666665554332 2222234444333332222 222233445555555566677776663 2333334567799
Q ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHH
Q 000647 302 FYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRY 381 (1374)
Q Consensus 302 ~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~ 381 (1374)
+|+.|++..+......+...+.+......+.|+++-.+++...+..+.++++++ ..+.. .+.+..|.
T Consensus 1012 Af~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl---~~~~~-~~~g~vGL--------- 1078 (1381)
T KOG0054|consen 1012 AFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVL---LPSGL-ISPGLVGL--------- 1078 (1381)
T ss_pred eccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCCC-CCcchHHH---------
Confidence 999999998766666666555555556667777776665543332222222221 11111 11122221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCC-CCee
Q 000647 382 HTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVL 460 (1374)
Q Consensus 382 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~ 460 (1374)
..++.+++.+.+.+++-....++.-..+++|+.|..+.++|.+... ....+...+|..+.|+|+|++..|.. ..++
T Consensus 1079 slsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~---~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~V 1155 (1381)
T KOG0054|consen 1079 SLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEI---EESRPPPSWPSKGEIEFEDLSLRYRPNLPLV 1155 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCC---cCCCCCCCCCCCCeEEEEEeEEEeCCCCcch
Confidence 1223344555666677777778888889999999988766511111 11113455788899999999998854 4789
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhc
Q 000647 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLI 534 (1374)
Q Consensus 461 l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~ 534 (1374)
|+|+||+|++||+++|||++|||||||.++|-++.+|.+|+|.+||.| .++|++++.+||+|.+|+||+|.|+-
T Consensus 1156 Lk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLD 1235 (1381)
T KOG0054|consen 1156 LKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLD 1235 (1381)
T ss_pred hcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccC
Confidence 999999999999999999999999999999999999999999999986 47899999999999999999999985
Q ss_pred CCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 000647 535 YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTT 611 (1374)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~ 611 (1374)
-. ++.+|++++++|+.|+|.+.+.+.|.+.+. +.|.++|-||||.++|||||+++++|++|||+|+++|+
T Consensus 1236 Pf-------~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~ 1308 (1381)
T KOG0054|consen 1236 PF-------DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDP 1308 (1381)
T ss_pred cc-------cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCCh
Confidence 21 346899999999999999999998865433 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 612 DMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 612 ~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
++...|++.+++ .++|||.|+||++++-.+|+|++||+
T Consensus 1309 ~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~ 1348 (1381)
T KOG0054|consen 1309 ETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDA 1348 (1381)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeC
Confidence 999999999997 49999999999999999999999986
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=469.70 Aligned_cols=260 Identities=13% Similarity=0.162 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCCc----ccc
Q 000647 1040 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ----KLL 1115 (1374)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~----~~v 1115 (1374)
...+..+..+......+.....+++|+.++.+..+.+++....+.......-+.....+.|+|+||+|.||+. +++
T Consensus 278 ~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~ 357 (555)
T TIGR01194 278 LYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFA 357 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCce
Confidence 3445566667777777888889999999997643221110000000000000001124689999999999863 469
Q ss_pred cccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhc
Q 000647 1116 ARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQII 1193 (1374)
Q Consensus 1116 L~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~ 1193 (1374)
|+|+||+|++||+++||||||||||||+++|.|+|+|++|+|.+||.|++++ +.+|+.+++|||||++|++|+|+|+.
T Consensus 358 l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~ 437 (555)
T TIGR01194 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG 437 (555)
T ss_pred eccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccc
Confidence 9999999999999999999999999999999999999999999999999987 46788899999999999999999962
Q ss_pred cCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCChhhhhhhccccchhhH
Q 000647 1194 YPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLI 1273 (1374)
Q Consensus 1194 yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSgGQrQrlai~~~~~~~ 1273 (1374)
|. ..+++++++++.++++++++.+|+||||. .+|||||||||||
T Consensus 438 -~~------------------------~~~~~~~~~~~~~~l~~~~~~lp~g~~t~----~~LSgGq~qRlal------- 481 (555)
T TIGR01194 438 -EH------------------------ASLDNAQQYLQRLEIADKVKIEDGGFSTT----TALSTGQQKRLAL------- 481 (555)
T ss_pred -cc------------------------hhHHHHHHHHHHcCCchhhcccccccCCc----ccCCHHHHHHHHH-------
Confidence 21 13455778899999999999999999985 5699999999999
Q ss_pred HhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHH-HHH---hcCceEEEecCCCC
Q 000647 1274 QLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYR-LAK---DMGITFVTSSQRPA 1349 (1374)
Q Consensus 1274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~-~~~---~~~~TvI~IaHRl~ 1349 (1374)
|||++++|+|+|||||||+||+++|+.+++ +.+ ..++|+|+||||++
T Consensus 482 -----------------------------aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~ 532 (555)
T TIGR01194 482 -----------------------------ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ 532 (555)
T ss_pred -----------------------------HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 999999999999999999999999998865 322 35899999999999
Q ss_pred chhhccceEEEEcCC
Q 000647 1350 LIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1350 ~i~~~~~~l~l~~g~ 1364 (1374)
+++..|+++.+.+|+
T Consensus 533 ~~~~~d~i~~l~~G~ 547 (555)
T TIGR01194 533 YFELADQIIKLAAGC 547 (555)
T ss_pred HHHhCCEEEEEECCE
Confidence 999999999996553
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=423.51 Aligned_cols=250 Identities=27% Similarity=0.367 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCC-cccccccceE
Q 000647 1043 FLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTF 1121 (1374)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~ls~ 1121 (1374)
...+-.....-+++..+..+-.|+.++.+..+...+ + .|-+..+|.+..+++++.-|. .+++++|+||
T Consensus 289 LaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~---------~--m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF 357 (580)
T COG4618 289 LAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE---------R--MPLPAPQGALSVERLTAAPPGQKKPILKGISF 357 (580)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC---------C--CCCCCCCceeeEeeeeecCCCCCCcceeccee
Confidence 334444455556777777888999998876433221 1 122224799999999998887 5799999999
Q ss_pred EEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhccCC-C-
Q 000647 1122 EIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPL-S- 1197 (1374)
Q Consensus 1122 ~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~-~- 1197 (1374)
++.|||.+||+||||||||||.++|.|.|+|.+|+|.+||-|++++ +.+.++|+|.|||--||+|||+|||+--. .
T Consensus 358 ~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~ 437 (580)
T COG4618 358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEA 437 (580)
T ss_pred EecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccC
Confidence 9999999999999999999999999999999999999999999999 47788999999999999999999997221 1
Q ss_pred hhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccccCCChhhhhhhccccchhhHHhh
Q 000647 1198 REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQLC 1276 (1374)
Q Consensus 1198 ~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~~~ 1276 (1374)
.+|.+++|++ ..+.++++-++|+||||.+ +.|..|||||||||++
T Consensus 438 d~~kIieAA~------------------------lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaL---------- 483 (580)
T COG4618 438 DPEKVIEAAR------------------------LAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIAL---------- 483 (580)
T ss_pred CHHHHHHHHH------------------------HcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHH----------
Confidence 1233344444 4455667888999999998 4689999999999999
Q ss_pred hcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHH---HhcCceEEEecCCCCchhh
Q 000647 1277 SINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA---KDMGITFVTSSQRPALIPF 1353 (1374)
Q Consensus 1277 ~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~---~~~~~TvI~IaHRl~~i~~ 1353 (1374)
||||+.+|++++||||-|+||.+-|.+|.+.+ |..|+|+|+||||++.+..
T Consensus 484 --------------------------ARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~ 537 (580)
T COG4618 484 --------------------------ARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS 537 (580)
T ss_pred --------------------------HHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhh
Confidence 99999999999999999999999999887754 4579999999999999999
Q ss_pred ccceEEEEcC
Q 000647 1354 HSLELRLIDG 1363 (1374)
Q Consensus 1354 ~~~~l~l~~g 1363 (1374)
.|++|.+.||
T Consensus 538 ~Dkilvl~~G 547 (580)
T COG4618 538 VDKILVLQDG 547 (580)
T ss_pred cceeeeecCC
Confidence 9999999776
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=458.63 Aligned_cols=244 Identities=17% Similarity=0.173 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCCCCCCCCCCEEEeeeEEeCCCcccccccceEEE
Q 000647 1044 LAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEI 1123 (1374)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~~ls~~I 1123 (1374)
..+..+......+.....+.+|+.++.+..++. +. ... . +.. ..+.|+|+||+|.||+.+++|+|+||+|
T Consensus 277 ~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~---~~--~~~--~--~~~-~~~~i~~~~v~f~y~~~~~~l~~i~~~i 346 (547)
T PRK10522 277 TPLLSAVGALPTLLSAQVAFNKLNKLALAPYKA---EF--PRP--Q--AFP-DWQTLELRNVTFAYQDNGFSVGPINLTI 346 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---cc--ccc--c--ccC-cCceEEEEEEEEEeCCCCeEEecceEEE
Confidence 455566666677777888999999985321110 00 000 0 011 1357999999999997778999999999
Q ss_pred eCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcchHHHhccCCChhHH
Q 000647 1124 VPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEA 1201 (1374)
Q Consensus 1124 ~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~ 1201 (1374)
+|||+++||||||||||||+++|.|+|+|.+|+|.+||+|+++. +.+|+++++|||||++|+||+++| +..
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~---- 419 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKP---- 419 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCc----
Confidence 99999999999999999999999999999999999999999987 467889999999999999999998 211
Q ss_pred HHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCChhhhhhhccccchhhHHhhhcccc
Q 000647 1202 ELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKI 1281 (1374)
Q Consensus 1202 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~ 1281 (1374)
..+++++++++.+++.+.++. ++|.. .|.+||||||||++|
T Consensus 420 -------------------~~~~~~~~~~~~~~l~~~~~~-~~~~~----~G~~LSgGq~qRl~l--------------- 460 (547)
T PRK10522 420 -------------------ANPALVEKWLERLKMAHKLEL-EDGRI----SNLKLSKGQKKRLAL--------------- 460 (547)
T ss_pred -------------------hHHHHHHHHHHHcCCchhhhc-cccCC----CCCCCCHHHHHHHHH---------------
Confidence 123456677888888766543 33321 267899999999999
Q ss_pred cchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH----hcCceEEEecCCCCchhhccce
Q 000647 1282 SELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPALIPFHSLE 1357 (1374)
Q Consensus 1282 ~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~----~~~~TvI~IaHRl~~i~~~~~~ 1357 (1374)
|||++++|+++|||||||+||.++|+.+.+.+. ..++|+|+||||+++++..|++
T Consensus 461 ---------------------ARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i 519 (547)
T PRK10522 461 ---------------------LLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRL 519 (547)
T ss_pred ---------------------HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEE
Confidence 999999999999999999999999988766443 2489999999999999999999
Q ss_pred EEEEcCC
Q 000647 1358 LRLIDGE 1364 (1374)
Q Consensus 1358 l~l~~g~ 1364 (1374)
+.+.+|+
T Consensus 520 ~~l~~G~ 526 (547)
T PRK10522 520 LEMRNGQ 526 (547)
T ss_pred EEEECCE
Confidence 9996553
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=410.26 Aligned_cols=335 Identities=21% Similarity=0.327 Sum_probs=263.3
Q ss_pred hHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHH
Q 000647 296 HAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKM 375 (1374)
Q Consensus 296 ~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~ 375 (1374)
|-|+||-|+.|+.|..+++...+.+.+...+......++++.+..++ +.....++...+. .+..+..|.|...+
T Consensus 131 nfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~---~~~l~~~m~~s~~---~v~~g~~TvgD~V~ 204 (497)
T COG5265 131 NFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIF---STGLRVMMTMSAL---GVEEGQLTVGDLVN 204 (497)
T ss_pred hhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHhhcHH---HHhhccCCchhHHh
Confidence 78999999999999977776666555544443333445555555442 2222222222221 11123345665433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCcc-CCCCcEEEeeeEEEc
Q 000647 376 LSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYF-SEANYIEFSGVKVVT 454 (1374)
Q Consensus 376 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~~ 454 (1374)
.. .++++...++..+..+++++.+...-.++++++++.+.+.... +.. +..+ ...+.+.|+||+|.|
T Consensus 205 ~N------all~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~--pda----~~L~~~~~g~v~F~~V~F~y 272 (497)
T COG5265 205 VN------ALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDA--PDA----PPLWPVRLGAVAFINVSFAY 272 (497)
T ss_pred HH------HHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccC--CCC----ccccccccceEEEEEEEeec
Confidence 32 2344555666677778899998888888888887766554321 100 0111 234679999999999
Q ss_pred CCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCC
Q 000647 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGT 528 (1374)
Q Consensus 455 ~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~T 528 (1374)
...+++|+++||++++|+.++|+||||+||||++++|.++|++++|.|.+||++ ..+|+.||.|||+..||+.|
T Consensus 273 ~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDt 352 (497)
T COG5265 273 DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDT 352 (497)
T ss_pred cccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhh
Confidence 888999999999999999999999999999999999999999999999999986 35788999999999999999
Q ss_pred HHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCCEEEEecC
Q 000647 529 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605 (1374)
Q Consensus 529 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~illLDEp 605 (1374)
+..||.|+.+. .+++++..+++.+.+++++..+|.+.++ +.|-.||||||||+||||+++++|+|++|||+
T Consensus 353 i~yni~ygr~~------at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~dea 426 (497)
T COG5265 353 IAYNIKYGRPD------ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEA 426 (497)
T ss_pred HHHHHhccCcc------ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehh
Confidence 99999998653 5788999999999999999999988766 45778999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecCCCceEEe
Q 000647 606 TSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVH 656 (1374)
Q Consensus 606 tsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~~g~~~~~ 656 (1374)
|||||.++|+.|+..+++ .|.|.++|+||++++..+|.|+++++ |..++
T Consensus 427 tsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~--g~i~e 477 (497)
T COG5265 427 TSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDN--GRIVE 477 (497)
T ss_pred hhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeC--CEEEe
Confidence 999999999999999986 59999999999999999999999986 34444
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=432.36 Aligned_cols=198 Identities=28% Similarity=0.378 Sum_probs=164.4
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-------cccccE
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEI 515 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~-------~~~~~i 515 (1374)
..++++|+++.|| +.++|+++||++.+||+++++|.||+|||||+|+|+|.++|++|+|.++|... .....|
T Consensus 7 ~ll~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 7 PLLELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred ceeeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 4689999999996 67899999999999999999999999999999999999999999999999641 234679
Q ss_pred EEEecCCCCCc-CCHHHHhcCCCCCCcccCCCC----HHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHH
Q 000647 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLT----HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1374)
Q Consensus 516 ~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~----~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1374)
..|+|++.+++ .||.|||.++........-.+ ..+..++|+.+++....+.. ..+||+||||-|+||
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~--------v~~LsiaqrQ~VeIA 157 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTL--------VGDLSIAQRQMVEIA 157 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhh--------hhhCCHHHHHHHHHH
Confidence 99999998764 699999988765332111122 23456778888775222221 258999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHH---hcCCEEEEEccChhhH-hhccEEEEecC
Q 000647 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 591 Ral~~~p~illLDEptsaLD~~~~~~i~~~l~---~~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
||+..+++++|||||||+|+....+.+++.++ +.|.++|+|||+++.+ +.||+|.+|.+
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRD 220 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRD 220 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeC
Confidence 99999999999999999999998888877654 5799999999999887 57999999975
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=397.80 Aligned_cols=198 Identities=28% Similarity=0.366 Sum_probs=167.0
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-------ccccccE
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-------~~~~~~i 515 (1374)
..++++++++.|| +..+.+|+||+|++||+.+|.|.||+|||||+++|.|+|+|++|+|.++|+. ...+..|
T Consensus 3 ~~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred ceEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 3589999999998 7889999999999999999999999999999999999999999999999964 2356789
Q ss_pred EEEecCCCCCc-CCHHHHhcCCCCCCcc---cCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHH
Q 000647 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1374)
Q Consensus 516 ~~v~Q~p~l~~-~Tv~eni~~~~~~~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalAR 591 (1374)
|+|.|++.+++ -|+.|||..+...... ......+++.++.+..||.=..+.. ...||-|||||+.|-+
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~--------V~dLsVG~qQRVEIlK 153 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAK--------VADLSVGEQQRVEILK 153 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccce--------eecCCcchhHHHHHHH
Confidence 99999998876 5999999998754211 0112234566677777765443333 2579999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHH---hcCCEEEEEccChhhHh-hccEEEEecC
Q 000647 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 592 al~~~p~illLDEptsaLD~~~~~~i~~~l~---~~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||++|++||||||||-|-|...+++++.++ +.|+|||+|||++..+. .||++-+|..
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~ 215 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRR 215 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeC
Confidence 9999999999999999999999999887665 57999999999998875 6999999975
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=375.04 Aligned_cols=197 Identities=28% Similarity=0.389 Sum_probs=173.1
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-------ccccccEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-------~~~~~~i~ 516 (1374)
.|+++|++++| ++..+|+++|++|++||.++|+||||||||||+|+|.||.+|++|+|.++|.+ ..+|+++|
T Consensus 2 mi~i~~l~K~f-g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSF-GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEe-CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 58999999998 46789999999999999999999999999999999999999999999999953 24678999
Q ss_pred EEecCCCCCc-CCHHHHhcCCCCC-CcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 517 YVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 517 ~v~Q~p~l~~-~Tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
+|+|+..||+ .|+.||+.++... .........++..+.|+++||.+..+.+| .+||||||||+||||||+
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP--------~qLSGGQqQRVAIARALa 152 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP--------AQLSGGQQQRVAIARALA 152 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc--------cccCcHHHHHHHHHHHHc
Confidence 9999999987 5999999986422 11112223455678899999999999999 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHH---hcCCEEEEEccChhhHh-hccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~---~~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
.+|+++++|||||||||+...++.+.++ +.|.|.|+|||.+.+++ .+|+|+.||+
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~ 211 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQ 211 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeC
Confidence 9999999999999999999998877554 57999999999999996 6899999986
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=376.58 Aligned_cols=198 Identities=28% Similarity=0.364 Sum_probs=176.0
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-ccccccEEEEecCC
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRP 522 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-~~~~~~i~~v~Q~p 522 (1374)
.+++++|++.|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.. .....+++||+|++
T Consensus 3 ~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred eEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 5889999999864 889999999999999999999999999999999999999999999999865 34457899999999
Q ss_pred CCCcC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000647 523 YTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1374)
Q Consensus 523 ~l~~~-Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ill 601 (1374)
.+++. |++||+.++............+++.++|+.+||.++.+++| .+||||||||+||||||+.+|++|+
T Consensus 82 ~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P--------~qLSGGMrQRVaiARAL~~~P~lLL 153 (248)
T COG1116 82 ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP--------HQLSGGMRQRVAIARALATRPKLLL 153 (248)
T ss_pred cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc--------cccChHHHHHHHHHHHHhcCCCEEE
Confidence 98885 99999999976543223334557889999999999999999 6899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHH----hcCCEEEEEccChhhH-hhccEEEEecCC
Q 000647 602 LDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1374)
Q Consensus 602 LDEptsaLD~~~~~~i~~~l~----~~~~TiI~vtH~~~~~-~~~d~il~l~~~ 650 (1374)
||||++|||..+...+.+.+. +.++|+++||||.+.. ..+|+|++|.++
T Consensus 154 lDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 154 LDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred EcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999998887654 4689999999999876 468999999864
|
|
| >PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=383.83 Aligned_cols=275 Identities=28% Similarity=0.484 Sum_probs=262.8
Q ss_pred hHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTS 164 (1374)
Q Consensus 85 ~~~l~~Ll~i~~p~~~~~~~~~l~~~~~l~~~~t~ls~~~~~~~~~~~~al~~~~~~~f~~~l~~~~~~~~~~~~~~~~~ 164 (1374)
++++++|+++.+|+.+++++.+++++++++++++.++++++.|+|+||++++++|.+.|++.++.+++++++.+++++..
T Consensus 7 lr~f~~L~~~~~~~~~~~~~~ll~~ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~~l~~~~~l~~~~~~l~~~~ 86 (281)
T PF06472_consen 7 LRRFWRLARIYWPSERWKAWLLLLVLLLLLLARVYLSVRINFWNGDFYNALQQKDLQAFWRLLLLFLLLAIASALLNSIL 86 (281)
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1374)
Q Consensus 165 ~yl~~~l~~~~R~~lt~~l~~~yl~~~~~y~~~~~d~~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 244 (1374)
+|+++.++++||+|||++++++|+++.+||+++..++++|||||||++|+++||+.+++++.+++.++++.+.|++.++.
T Consensus 87 ~yl~~~L~l~wR~~Lt~~~~~~yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~ 166 (281)
T PF06472_consen 87 KYLRQRLALRWREWLTRHLHDRYLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWS 166 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999987
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 000647 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1374)
Q Consensus 245 ~~~~~l~~~~l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~ 324 (1374)
..++..++.+++|+++++.++++++|++.+++.++|++||+||+.|.++|+|+|+||+|+||+.|+++++++|+++.+++
T Consensus 167 ~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~ 246 (281)
T PF06472_consen 167 ISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNW 246 (281)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 66666666678888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000647 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF 359 (1374)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 359 (1374)
++.++.+.++++++.++.++++..+++++++||+|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~F 281 (281)
T PF06472_consen 247 RRLIRRRLRLGFFTNFYVKYLSSILPYLVVAPPYF 281 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 99999999999999998889999999999999875
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-43 Score=381.93 Aligned_cols=198 Identities=27% Similarity=0.378 Sum_probs=179.2
Q ss_pred cEEEeeeEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC---------cc
Q 000647 444 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SD 510 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~----~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~---------~~ 510 (1374)
+|++++|++.|+.+ ..+++|+||+|++||+.+|+|+||+|||||+|++.+|-.|++|+|.++|.+ ..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 47899999988752 469999999999999999999999999999999999999999999999964 23
Q ss_pred ccccEEEEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHH
Q 000647 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1374)
Q Consensus 511 ~~~~i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1374)
.|++||++||++.++. .||.+|+.||.......+.....++.++|+.+||.+..+++| .+|||||||||+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP--------~qLSGGQKQRVaI 152 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP--------AQLSGGQKQRVAI 152 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc--------hhcCcchhhHHHH
Confidence 5789999999999987 699999999987655433345667889999999999999999 7999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 590 ARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||||+.+|++|+.|||||||||++.+.|.+.|++ .|.||++|||.++.++ .||++.+|++
T Consensus 153 ARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~ 217 (339)
T COG1135 153 ARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQ 217 (339)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeC
Confidence 9999999999999999999999999999998864 5999999999999996 7999999986
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=367.42 Aligned_cols=198 Identities=30% Similarity=0.422 Sum_probs=170.1
Q ss_pred EEEeeeEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------c---c-c
Q 000647 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------S---D-L 511 (1374)
Q Consensus 445 i~~~~v~~~~~~~---~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~---~-~ 511 (1374)
++++||++.|..+ ..+|+++||+|++||+++|+|||||||||||++|.|+..|++|.|.++|.+ . . .
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 5789999988654 369999999999999999999999999999999999999999999999954 0 1 3
Q ss_pred cccEEEEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHh-cCCCCccccCCCCCChhHHHHHHH
Q 000647 512 NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD-RYPPEKEINWGDELSLGEQQRLGM 589 (1374)
Q Consensus 512 ~~~i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~~~~~~g~~LSgGqkQRlal 589 (1374)
+++||||+|+..|.+ .|++|||.+|.............++.++++.+||.+... +.| .+||||||||+||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p--------~eLSGGqqQRVAI 153 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP--------SELSGGQQQRVAI 153 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc--------hhcCHHHHHHHHH
Confidence 468999999998765 699999997654322211123456778899999997777 667 6899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHhhccEEEEecCC
Q 000647 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1374)
Q Consensus 590 ARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~~~d~il~l~~~ 650 (1374)
||||+++|++++.||||.+||.++.+.+++.+++ .|+|+|+||||+....+||+++.+.++
T Consensus 154 ARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG 218 (226)
T COG1136 154 ARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDG 218 (226)
T ss_pred HHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999988764 489999999999999999999999763
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=346.31 Aligned_cols=198 Identities=26% Similarity=0.353 Sum_probs=177.3
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC---------cccccc
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNKE 514 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~---------~~~~~~ 514 (1374)
+|+|+||++.|+++.++|+|+||+|++||++.|+||||||||||+|+|.+...|++|+|.++|.+ .-+|++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 47999999999999889999999999999999999999999999999999999999999999975 136789
Q ss_pred EEEEecCCCCC-cCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000647 515 IFYVPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 515 i~~v~Q~p~l~-~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1374)
||+|+|+.-+. .-|+.||+.||..........-.+++.++|+.+||.+..+.+| .+||||||||++||||+
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP--------~~LSGGEQQRvaIARAi 152 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP--------SQLSGGEQQRVAIARAI 152 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc--------cccCchHHHHHHHHHHH
Confidence 99999998765 4699999999987654443444567889999999999999998 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHhhc-cEEEEecC
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFH-DVVLSLDG 649 (1374)
Q Consensus 594 ~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~~~-d~il~l~~ 649 (1374)
+++|++||.||||.+||++...+|++.+.+ .|+||++.|||.+++... .+++.+++
T Consensus 153 V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~ 212 (223)
T COG2884 153 VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALED 212 (223)
T ss_pred ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeC
Confidence 999999999999999999999999988765 699999999999999754 57777764
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=358.96 Aligned_cols=197 Identities=27% Similarity=0.373 Sum_probs=173.2
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~ 517 (1374)
+|+|+||++.|. ++.+++|+||+|++||+++++|||||||||++|+|.++++|++|+|.++|.+ .++|++|||
T Consensus 1 MI~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred CceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 478999999985 7889999999999999999999999999999999999999999999999975 357899999
Q ss_pred EecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCh--hHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 518 v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
|-|.--||+ .||.|||.+-..-....++..++++.+.++.++|+ ++.+|+| ++||||||||+.+||||+
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP--------~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP--------HELSGGQQQRVGVARALA 151 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc--------hhcCcchhhHHHHHHHHh
Confidence 999988876 69999998743222222223456788999999996 4899999 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHH----hcCCEEEEEccChhhH-hhccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~----~~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
.+|++++||||++|||+-++..+.+.++ +.|+|+|+||||++.. +.+|+|.+|++
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecC
Confidence 9999999999999999999999988664 3599999999999875 78999999985
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=362.86 Aligned_cols=198 Identities=28% Similarity=0.400 Sum_probs=171.8
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-ccc--cccEEEEe
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDL--NKEIFYVP 519 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-~~~--~~~i~~v~ 519 (1374)
..|+++|+++.|.++ ++|+|+||+|++|++++|+||||||||||+|+|+|+.+|.+|+|.+.|.+ ... +.+|||||
T Consensus 3 ~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 368999999999655 79999999999999999999999999999999999999999999998864 122 36899999
Q ss_pred cCC---CCCcCCHHHHhcCCCCCCcc----cCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000647 520 QRP---YTAVGTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1374)
Q Consensus 520 Q~p---~l~~~Tv~eni~~~~~~~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1374)
|+. +-|+.||+|-+..+...... ....+.+++.++|+.+|+.++.++.. .+|||||+||+.||||
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i--------~~LSGGQ~QRV~lARA 153 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQI--------GELSGGQKQRVLLARA 153 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcc--------cccCcHHHHHHHHHHH
Confidence 975 55778999999887433211 11234578999999999999999854 5899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 593 l~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|+++|++++|||||+|+|+.++..+++.+++ .|+||++||||++.+. ++|+|+.|++
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~ 214 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR 214 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC
Confidence 9999999999999999999999999987753 5999999999999874 7999999986
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=364.80 Aligned_cols=197 Identities=28% Similarity=0.388 Sum_probs=173.2
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~ 517 (1374)
.++++|+++.|+ ++++++|+||++++||+++|+||||||||||+|+|+|+.+|.+|+|.++|.+ +++.++++|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 478999999996 7899999999999999999999999999999999999999999999999975 356789999
Q ss_pred EecCCCCCc-CCHHHHhcCCCCCCcc----cCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000647 518 VPQRPYTAV-GTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1374)
Q Consensus 518 v~Q~p~l~~-~Tv~eni~~~~~~~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1374)
|||.+..+. -||+|-+.+|...... ..+.+.+.+.++|+.+++.++.+|.- .+||||||||+.||||
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~--------~~LSGGerQrv~iArA 152 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV--------DELSGGERQRVLIARA 152 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc--------cccChhHHHHHHHHHH
Confidence 999986654 5999999987543211 12223346788999999999999864 6899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 593 l~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|+++|++++||||||+||.....++++.+++ .|+|+|+|.||+++. .+||+++.|++
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~ 214 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKD 214 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999988764 489999999999986 68999999986
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=370.89 Aligned_cols=183 Identities=22% Similarity=0.238 Sum_probs=140.5
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEec
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~Vp 1178 (1374)
-|.|+||+|.|++.+.+++++||-|.++++|++|||||+|||||++++.+...|..|.|..... ..++.--
T Consensus 389 vi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H---------~~~~~y~ 459 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH---------NKLPRYN 459 (614)
T ss_pred eEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc---------ccchhhh
Confidence 4899999999998889999999999999999999999999999999999999999999854332 2233333
Q ss_pred CCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCCh
Q 000647 1179 QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1374)
Q Consensus 1179 Q~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSg 1258 (1374)
|+ .-+.++|-.+..|-.+.+... +-.-+++..+|...||.... ..-.-.+||+
T Consensus 460 Qh-------~~e~ldl~~s~le~~~~~~~~-----------~~~~e~~r~ilgrfgLtgd~---------q~~p~~~LS~ 512 (614)
T KOG0927|consen 460 QH-------LAEQLDLDKSSLEFMMPKFPD-----------EKELEEMRSILGRFGLTGDA---------QVVPMSQLSD 512 (614)
T ss_pred hh-------hHhhcCcchhHHHHHHHhccc-----------cchHHHHHHHHHHhCCCccc---------cccchhhccc
Confidence 33 234454433322222222110 12345677888877764221 1112468999
Q ss_pred hhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHhcC
Q 000647 1259 GEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMG 1338 (1374)
Q Consensus 1259 GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~~~ 1338 (1374)
|||-|+++ ||+.+..|.+|||||||++||.++.+++.+.+.+..
T Consensus 513 Gqr~rVlF------------------------------------a~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~ 556 (614)
T KOG0927|consen 513 GQRRRVLF------------------------------------ARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP 556 (614)
T ss_pred ccchhHHH------------------------------------HHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC
Confidence 99999999 999999999999999999999999999999888888
Q ss_pred ceEEEecCCCCchhh
Q 000647 1339 ITFVTSSQRPALIPF 1353 (1374)
Q Consensus 1339 ~TvI~IaHRl~~i~~ 1353 (1374)
-+||.|+|..-+|..
T Consensus 557 Ggvv~vSHDfrlI~q 571 (614)
T KOG0927|consen 557 GGVVLVSHDFRLISQ 571 (614)
T ss_pred CceeeeechhhHHHH
Confidence 899999999877754
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=346.04 Aligned_cols=203 Identities=23% Similarity=0.352 Sum_probs=175.6
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC---------cccccc
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNKE 514 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~---------~~~~~~ 514 (1374)
.|+++||+..||+++.+|+||||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|.+ .+++++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999954 246789
Q ss_pred EEEEecCCCCCc-CCHHHHhcCCCCCCcc--------cCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHH
Q 000647 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQE--------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1374)
Q Consensus 515 i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~--------~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQ 585 (1374)
|||++|+|.|.+ .|+.+|++.|.-.... ..+.+.....++|+.+|+.+..-... ++|||||||
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--------~~LSGGQQQ 154 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--------STLSGGQQQ 154 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh--------ccCCcchhH
Confidence 999999998865 5999999876543211 11223445678899999988765533 689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecCCCceEE
Q 000647 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEWRV 655 (1374)
Q Consensus 586 RlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~~g~~~~ 655 (1374)
||+|||||+++|++++.|||+++|||.+.+++++.+++ .|+|+|+.-|+.++++ |||||+-|+. |...+
T Consensus 155 RVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~-G~ivf 228 (258)
T COG3638 155 RVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKA-GRIVF 228 (258)
T ss_pred HHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecC-CcEEE
Confidence 99999999999999999999999999999999998864 5899999999999985 8999999985 44444
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=375.97 Aligned_cols=206 Identities=20% Similarity=0.236 Sum_probs=184.7
Q ss_pred CCEEEeeeEEeCCC-cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccE
Q 000647 1098 DSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGI 1174 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~-~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i 1174 (1374)
|.|+|+||++.||. .+++|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.+||.++... ..+|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 57999999999974 5679999999999999999999999999999999999998 789999999999876 3567889
Q ss_pred EEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc-ccc
Q 000647 1175 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWE 1253 (1374)
Q Consensus 1175 ~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~-~~g 1253 (1374)
+||||+|.+|++|+++|++ +.. ...+++++++++.++|...+...|+|+|+.+ +.|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~-~~~----------------------~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLD-PYG----------------------KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred EEECCCcccchhhHHHHhh-hcc----------------------CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 9999999999999999996 221 1234567888999999999999999999987 478
Q ss_pred cCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHH
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL 1333 (1374)
Q Consensus 1254 ~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~ 1333 (1374)
..||+|||||+|+ |||++++|+|+||||||++||.++.+.+++.
T Consensus 137 ~~LS~G~~qrl~L------------------------------------aRall~~p~illlDEpts~LD~~~~~~l~~~ 180 (275)
T cd03289 137 CVLSHGHKQLMCL------------------------------------ARSVLSKAKILLLDEPSAHLDPITYQVIRKT 180 (275)
T ss_pred CCCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEECccccCCHHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999998887
Q ss_pred HHh--cCceEEEecCCCCchhhccceEEEEcC
Q 000647 1334 AKD--MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1334 ~~~--~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
++. .++|+|+|+||++++...|+++.+.+|
T Consensus 181 l~~~~~~~tii~isH~~~~i~~~dri~vl~~G 212 (275)
T cd03289 181 LKQAFADCTVILSEHRIEAMLECQRFLVIEEN 212 (275)
T ss_pred HHHhcCCCEEEEEECCHHHHHhCCEEEEecCC
Confidence 764 489999999999999889999999544
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=369.97 Aligned_cols=197 Identities=26% Similarity=0.383 Sum_probs=175.3
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-c---cccccEEEEe
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S---DLNKEIFYVP 519 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-~---~~~~~i~~v~ 519 (1374)
.|+++||++.|.+.. +++++||+|++||+++|+||||||||||||+|+||.+|++|+|.++|.+ . ...++|++||
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 589999999996444 9999999999999999999999999999999999999999999999965 2 2357899999
Q ss_pred cCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000647 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 520 Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
|++.|++ .||+|||.||.......+...+.++.++++.++|++++++.| .+||||||||+|||||++++|+
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P--------~~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP--------LQLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc--------ccCChhhHHHHHHHHHHhcCCC
Confidence 9998876 699999999988765444556788999999999999999999 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHH----hcCCEEEEEccChhhH-hhccEEEEecC
Q 000647 599 FAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 599 illLDEptsaLD~~~~~~i~~~l~----~~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+++||||+|+||.+....+...++ +.|.|+|.||||...+ ..+|+|.+|++
T Consensus 154 v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~ 209 (338)
T COG3839 154 VFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMND 209 (338)
T ss_pred EEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeC
Confidence 999999999999998887766554 3589999999997665 58999999983
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=343.31 Aligned_cols=196 Identities=34% Similarity=0.469 Sum_probs=171.0
Q ss_pred cEEEeeeEEEcCCCC---eeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-------ccccc
Q 000647 444 YIEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNK 513 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~---~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-------~~~~~ 513 (1374)
.++++|+++.|+.++ ++++|+||+|.+||+++|+|+||||||||.|+|+|+.+|++|+|.++|.. ....+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 589999999997655 69999999999999999999999999999999999999999999999964 13467
Q ss_pred cEEEEecCCCC---CcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChh-HHhcCCCCccccCCCCCChhHHHHHHH
Q 000647 514 EIFYVPQRPYT---AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGM 589 (1374)
Q Consensus 514 ~i~~v~Q~p~l---~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1374)
.+-+|||+|+- +..||++-|.-|...... .....++.++|+.+||.. +.+++| .+|||||+||+||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~--~~~~~~i~~~L~~VgL~~~~l~R~P--------~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGL--SKSQQRIAELLDQVGLPPSFLDRRP--------HELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCc--cHHHHHHHHHHHHcCCCHHHHhcCc--------hhcChhHHHHHHH
Confidence 89999999983 456999988877654221 123456889999999964 788888 6899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 590 ARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||||..+|++||||||||+||......+.+.+.+ .+.|+|+||||++.+. .||+|++|++
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~ 217 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDN 217 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeC
Confidence 9999999999999999999999999999887653 5889999999999986 6999999986
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=354.42 Aligned_cols=198 Identities=30% Similarity=0.442 Sum_probs=178.0
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-------ccccccEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-------~~~~~~i~ 516 (1374)
.++++|++|.|+++.++++|+||+|++||.++|+|+||||||||+++++|+++|++|+|.++|.+ ..+++++|
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 58899999999877789999999999999999999999999999999999999999999999864 24678999
Q ss_pred EEecCC--CCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 517 YVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 517 ~v~Q~p--~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
||+|+| .++..||.|.+.|+..+.....+..++++.++++.+++.++.++.| .+||||||||+|||.+|+
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p--------~~LSGGqkqRvaIA~vLa 154 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP--------FNLSGGQKQRVAIAGVLA 154 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc--------cccCCcceeeHHhhHHHH
Confidence 999999 5778899999999876654333334567889999999999988887 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh---c-CCEEEEEccChhhHh-hccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~---~-~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
.+|+++|||||||+||+...+.+++.+++ . |+|+|++|||++.+. ++|++++|++
T Consensus 155 ~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~ 214 (235)
T COG1122 155 MGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDD 214 (235)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEEC
Confidence 99999999999999999999999888764 3 689999999999886 5999999986
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=371.01 Aligned_cols=198 Identities=25% Similarity=0.387 Sum_probs=174.9
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-c---cccccEEEE
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S---DLNKEIFYV 518 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-~---~~~~~i~~v 518 (1374)
..++++||++.|. +..+++|+||+|++||++++.||||||||||||+|+|+..|++|+|.++|.+ . .-++.|++|
T Consensus 4 ~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 4 PALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred ceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 4689999999995 7889999999999999999999999999999999999999999999999975 1 235789999
Q ss_pred ecCCCCCc-CCHHHHhcCCCCCCcccC-CCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccC
Q 000647 519 PQRPYTAV-GTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1374)
Q Consensus 519 ~Q~p~l~~-~Tv~eni~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~ 596 (1374)
+|+.-||+ .||+|||.||+....... ....+++.++|+.++|+++.++.| .+||||||||+||||||..+
T Consensus 83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p--------~qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP--------HQLSGGQQQRVALARALVPE 154 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh--------hhhChHHHHHHHHHHHhhcC
Confidence 99998886 699999999987332211 223458899999999999999998 68999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHH----hcCCEEEEEccChhh-HhhccEEEEecC
Q 000647 597 PKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPAL-VAFHDVVLSLDG 649 (1374)
Q Consensus 597 p~illLDEptsaLD~~~~~~i~~~l~----~~~~TiI~vtH~~~~-~~~~d~il~l~~ 649 (1374)
|++|+||||.||||.+.+.++...++ +.|+|.|+||||.+. +..+|+|.+|++
T Consensus 155 P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~ 212 (352)
T COG3842 155 PKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMND 212 (352)
T ss_pred cchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccC
Confidence 99999999999999998888776654 469999999999876 478999999986
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=338.29 Aligned_cols=196 Identities=28% Similarity=0.367 Sum_probs=171.6
Q ss_pred CCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC---------cccc
Q 000647 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLN 512 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~---------~~~~ 512 (1374)
...|++++|++.+ +++.+++|+||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|.+ .+++
T Consensus 6 ~~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 3579999999998 57889999999999999999999999999999999999999999999999975 1367
Q ss_pred ccEEEEecCCCCCcC-CHHHHhcCCCCCCcccCCCCHHHH----HHHHHHcCChhH-HhcCCCCccccCCCCCChhHHHH
Q 000647 513 KEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGM----VELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQR 586 (1374)
Q Consensus 513 ~~i~~v~Q~p~l~~~-Tv~eni~~~~~~~~~~~~~~~~~~----~~~l~~~~L~~~-~~~~~~~~~~~~g~~LSgGqkQR 586 (1374)
+++|+++|.--||.. ||.||+.||...... .++..+ ..-|+.+||... .+.+| .+||||+++|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~---lp~~~i~~lv~~KL~~VGL~~~~~~~~P--------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTK---LPESLIRELVLMKLELVGLRGAAADLYP--------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhcc---CCHHHHHHHHHHHHHhcCCChhhhhhCc--------hhhcchHHHH
Confidence 899999999999975 999999999764322 333333 345889999887 78888 7899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 587 lalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+|||||+..+|+++++|||||||||.+...+-+++++ .|.|+|+||||++.+. .||+++++.+
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~ 221 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLAD 221 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeC
Confidence 9999999999999999999999999998887776653 5999999999998765 6899999975
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=336.05 Aligned_cols=201 Identities=23% Similarity=0.258 Sum_probs=170.1
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCc-----cEEEeCCCC--------c
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS-----GHIAKPGVG--------S 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~-----G~I~~~g~~--------~ 509 (1374)
..++++|++++|. .+.+|+|+|++|+++++++++||||||||||+|++.++.+... |+|.++|.+ .
T Consensus 6 ~~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 6 PAIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred ceeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 4689999999984 6789999999999999999999999999999999999988765 999999975 2
Q ss_pred cccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHH-hcCCCCccccCCCCCChhHHHHHH
Q 000647 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDELSLGEQQRLG 588 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~~~~~~g~~LSgGqkQRla 588 (1374)
++|+++|.|+|+|.-|+.||.||+.||..........-++.+++.|+.+.|++-+ +++. .-+..|||||||||+
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~-----~sa~~LSGGQQQRLc 159 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLH-----KSALGLSGGQQQRLC 159 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhh-----CCccCCChhHHHHHH
Confidence 4789999999999999999999999987654333233455678889999997654 3331 123579999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 589 lARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||||+.-+|++|+||||||||||.+..+|-+.+.+ .+-|||+|||.++... .+|+...+-.
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~ 223 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYL 223 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcc
Confidence 99999999999999999999999999988887765 4789999999998875 5688877753
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=350.16 Aligned_cols=199 Identities=24% Similarity=0.301 Sum_probs=169.9
Q ss_pred EEEeeeEEeCCC----cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc-----cCC
Q 000647 1100 ISFSKLDIITPS----QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-----AGS 1170 (1374)
Q Consensus 1100 I~f~~V~~~yp~----~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~-----~~~ 1170 (1374)
|+|++|+..|+. ...+|+|+||+|++||..||+|+||+|||||+|++-+|-.|++|+|.+||+||..+ ...
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 899999998876 25799999999999999999999999999999999999999999999999999988 256
Q ss_pred cccEEEecCCCCCCC-cchHHHhccCCCh---hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCC
Q 000647 1171 GCGIFYVPQRPYTCL-GTLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGW 1246 (1374)
Q Consensus 1171 r~~i~~VpQ~P~Lf~-GTlR~Nl~yp~~~---~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gl 1246 (1374)
|++|++|+|++-|++ -|+.+|++||+.- +.+++ .+.+.+.|+-|||.+...+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei-------------------~~RV~elLelVgL~dk~~~----- 137 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEI-------------------KQRVAELLELVGLSDKADR----- 137 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHH-------------------HHHHHHHHHHcCChhhhcc-----
Confidence 888999999999997 7999999999741 11111 2346678888888655433
Q ss_pred ccccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHH
Q 000647 1247 DANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDV 1326 (1374)
Q Consensus 1247 dt~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~ 1326 (1374)
.+.+||||||||++| ||||..+|||||.||||||||+++
T Consensus 138 -----yP~qLSGGQKQRVaI------------------------------------ARALa~~P~iLL~DEaTSALDP~T 176 (339)
T COG1135 138 -----YPAQLSGGQKQRVAI------------------------------------ARALANNPKILLCDEATSALDPET 176 (339)
T ss_pred -----CchhcCcchhhHHHH------------------------------------HHHHhcCCCEEEecCccccCChHH
Confidence 368899999999999 999999999999999999999998
Q ss_pred HHHHHHHHH----hcCceEEEecCCCCch-hhccceEEEEcC
Q 000647 1327 EEQLYRLAK----DMGITFVTSSQRPALI-PFHSLELRLIDG 1363 (1374)
Q Consensus 1327 e~~l~~~~~----~~~~TvI~IaHRl~~i-~~~~~~l~l~~g 1363 (1374)
-+.+.++++ +.|.|++.|+|-++.+ +++|++..+..|
T Consensus 177 T~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G 218 (339)
T COG1135 177 TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQG 218 (339)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCC
Confidence 876665544 4699999999999877 568888888544
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=349.37 Aligned_cols=197 Identities=26% Similarity=0.370 Sum_probs=168.8
Q ss_pred EEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc---------ccccc
Q 000647 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKE 514 (1374)
Q Consensus 445 i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~---------~~~~~ 514 (1374)
++++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 7899999999754 5799999999999999999999999999999999999999999999998641 13567
Q ss_pred EEEEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000647 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 515 i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1374)
++|+||+|.++. .|++||+.++...........++++.++++.+++.+..++.+ .+||||||||++|||||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~laral 153 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP--------MQLSGGEQQRVAIARAI 153 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHHHH
Confidence 999999998876 599999987532111101112456788999999998888766 58999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 594 ~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+++|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .+|+++++++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 213 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSR 213 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999888764 4899999999999886 6899999975
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=368.27 Aligned_cols=198 Identities=26% Similarity=0.340 Sum_probs=171.1
Q ss_pred cEEEeeeEEEcCC---CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc---------cc
Q 000647 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DL 511 (1374)
Q Consensus 444 ~i~~~~v~~~~~~---~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~---------~~ 511 (1374)
+|+++||++.|++ ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- ..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 3789999999963 24799999999999999999999999999999999999999999999998641 13
Q ss_pred cccEEEEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHH
Q 000647 512 NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1374)
Q Consensus 512 ~~~i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1374)
+++|+|+||++.++. .|++||+.++............+++.++++.++|.+..++.| .+||||||||++||
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~--------~~LSgGqkQRV~IA 152 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP--------SNLSGGQKQRVAIA 152 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh--------hhCCHHHHHHHHHH
Confidence 568999999998885 799999998753211111122356788999999999988877 68999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 591 Ral~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||+.+|+++|||||||+||+.+...+++.+++ .|+|+|+|||+++.+. .||++++|++
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~ 216 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISN 216 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999887764 3899999999999984 6999999985
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=342.53 Aligned_cols=197 Identities=28% Similarity=0.427 Sum_probs=172.0
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCC---C-cc---ccccEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV---G-SD---LNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~---~-~~---~~~~i~ 516 (1374)
+|+++|+++.++ ...+++|+|++|+.||.+++.||||||||||||+|+|+..|++|.|.++|. | .. -.++||
T Consensus 2 ~i~i~~~~~~~~-~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRFG-AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhcc-cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 467888888774 567889999999999999999999999999999999999999999999997 4 11 237899
Q ss_pred EEecCCCCCc-CCHHHHhcCCCCCCccc--CCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000647 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEV--EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 517 ~v~Q~p~l~~-~Tv~eni~~~~~~~~~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1374)
||+|+.-+|. .||.|||.||....... +.....++.+.|+.|+|+.+.+++| .+||||||||+|+||||
T Consensus 81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP--------~QLSGGQrQRVALARAL 152 (345)
T COG1118 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP--------AQLSGGQRQRVALARAL 152 (345)
T ss_pred EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc--------hhcChHHHHHHHHHHHh
Confidence 9999998876 79999999998543211 2234567889999999999999999 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 594 ~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
..+|++|+||||++|||.+..+.+.+.|++ .|.|+++||||.+.+ +.+|+|++|++
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~ 213 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQ 213 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecC
Confidence 999999999999999999999888776653 499999999999876 68999999986
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=346.34 Aligned_cols=197 Identities=29% Similarity=0.437 Sum_probs=168.0
Q ss_pred EEEeeeEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-c---------c
Q 000647 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-D---------L 511 (1374)
Q Consensus 445 i~~~~v~~~~~~~---~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~-~---------~ 511 (1374)
|+++||++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4689999998653 6799999999999999999999999999999999999999999999998641 1 2
Q ss_pred cccEEEEecCCCCCcC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHH
Q 000647 512 NKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1374)
Q Consensus 512 ~~~i~~v~Q~p~l~~~-Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1374)
++.++|+||+|.++.. |++||+.++...........++++.++++.+++++..++.+ .+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la 152 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP--------SELSGGQQQRVAIA 152 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh--------hhcCHHHHHHHHHH
Confidence 3579999999988875 99999987543211101112346788999999988877765 68999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHhhccEEEEecC
Q 000647 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 591 Ral~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
|||+++|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+..+|++++|++
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~ 215 (218)
T cd03255 153 RALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRD 215 (218)
T ss_pred HHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeC
Confidence 999999999999999999999999999887764 37899999999998889999999975
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=327.94 Aligned_cols=197 Identities=23% Similarity=0.310 Sum_probs=161.3
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccc---cccCCcccEE
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHID---EEAGSGCGIF 1175 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~---~~~~~r~~i~ 1175 (1374)
-|+++||+.+| +...||+|+|++|++||.+.|+|||||||||++|+|.+|-+|++|+|.+||.++. ++..+|++++
T Consensus 2 mi~i~~l~K~f-g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSF-GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEe-CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 48999999988 4678999999999999999999999999999999999999999999999998775 3467789999
Q ss_pred EecCCCCCCCc-chHHHhccCC------ChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcc
Q 000647 1176 YVPQRPYTCLG-TLRDQIIYPL------SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1374)
Q Consensus 1176 ~VpQ~P~Lf~G-TlR~Nl~yp~------~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt 1248 (1374)
+|.|..-||+- |+-||+.++. +.+|++.. -.+.|+.|||.+..+.
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~---------------------A~~lL~~VGL~~ka~~------- 132 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREK---------------------ALELLEKVGLADKADA------- 132 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHH---------------------HHHHHHHcCchhhhhh-------
Confidence 99999999965 9999998653 22222222 2456888888665443
Q ss_pred ccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHH
Q 000647 1249 NLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEE 1328 (1374)
Q Consensus 1249 ~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~ 1328 (1374)
+..+||||||||+|| ||||.-+|+++|+||||||||++.-.
T Consensus 133 ---yP~qLSGGQqQRVAI------------------------------------ARALaM~P~vmLFDEPTSALDPElv~ 173 (240)
T COG1126 133 ---YPAQLSGGQQQRVAI------------------------------------ARALAMDPKVMLFDEPTSALDPELVG 173 (240)
T ss_pred ---CccccCcHHHHHHHH------------------------------------HHHHcCCCCEEeecCCcccCCHHHHH
Confidence 467899999999999 99999999999999999999999765
Q ss_pred HHHHHH---HhcCceEEEecCCCCchh-hccceEEEEcC
Q 000647 1329 QLYRLA---KDMGITFVTSSQRPALIP-FHSLELRLIDG 1363 (1374)
Q Consensus 1329 ~l~~~~---~~~~~TvI~IaHRl~~i~-~~~~~l~l~~g 1363 (1374)
.+.+.+ ++.|.|.|+|||-....+ ..|+++-+.+|
T Consensus 174 EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G 212 (240)
T COG1126 174 EVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQG 212 (240)
T ss_pred HHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCC
Confidence 444332 347999999999886654 45666666433
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=320.83 Aligned_cols=199 Identities=25% Similarity=0.314 Sum_probs=172.8
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc-----cCCcccE
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-----AGSGCGI 1174 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~-----~~~r~~i 1174 (1374)
|+|+||+..||.++++|+|+||+|++||.+-++|||||||||++++|.+.-.|++|+|.++|.|+..+ -.+|++|
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 89999999999998899999999999999999999999999999999999999999999999999988 2579999
Q ss_pred EEecCCCCCC-CcchHHHhccCCCh---hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc
Q 000647 1175 FYVPQRPYTC-LGTLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1374)
Q Consensus 1175 ~~VpQ~P~Lf-~GTlR~Nl~yp~~~---~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~ 1250 (1374)
++|.||--|. +-|+.||++||+.. ++.++ ...+.++|+.|||.+....+|
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i-------------------~~rV~~~L~~VgL~~k~~~lP------- 135 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREI-------------------RRRVSEVLDLVGLKHKARALP------- 135 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhccCCCHHHH-------------------HHHHHHHHHHhccchhhhcCc-------
Confidence 9999999875 55999999999742 12111 234678899999988777764
Q ss_pred ccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHH
Q 000647 1251 NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL 1330 (1374)
Q Consensus 1251 ~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l 1330 (1374)
.+||||||||+|| |||++++|++||-||||.+||+++...+
T Consensus 136 ---~~LSGGEQQRvaI------------------------------------ARAiV~~P~vLlADEPTGNLDp~~s~~i 176 (223)
T COG2884 136 ---SQLSGGEQQRVAI------------------------------------ARAIVNQPAVLLADEPTGNLDPDLSWEI 176 (223)
T ss_pred ---cccCchHHHHHHH------------------------------------HHHHccCCCeEeecCCCCCCChHHHHHH
Confidence 6799999999999 9999999999999999999999998877
Q ss_pred HHHHHh---cCceEEEecCCCCchhh-ccceEEEEcC
Q 000647 1331 YRLAKD---MGITFVTSSQRPALIPF-HSLELRLIDG 1363 (1374)
Q Consensus 1331 ~~~~~~---~~~TvI~IaHRl~~i~~-~~~~l~l~~g 1363 (1374)
.++..+ .|.|||+.||..+++.- ..+++.|.+|
T Consensus 177 m~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~G 213 (223)
T COG2884 177 MRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDG 213 (223)
T ss_pred HHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCC
Confidence 776543 69999999999988754 4566666443
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=344.01 Aligned_cols=200 Identities=27% Similarity=0.353 Sum_probs=169.5
Q ss_pred EEEeeeEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-ccccccEEEEec
Q 000647 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQ 520 (1374)
Q Consensus 445 i~~~~v~~~~~~~---~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-~~~~~~i~~v~Q 520 (1374)
++++|+++.|+++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 4689999999642 679999999999999999999999999999999999999999999999865 234578999999
Q ss_pred CCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000647 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1374)
Q Consensus 521 ~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1374)
+|.++. .|++||+.++............+++.++++.+++.+..++.+ ..||||||||++|||||+++|++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrl~la~al~~~p~l 152 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP--------HQLSGGMRQRVALARALAVDPDV 152 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc--------ccCCHHHHHHHHHHHHHHcCCCE
Confidence 998877 699999987532111111112356788999999998888766 58999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC-CCc
Q 000647 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG-EGE 652 (1374)
Q Consensus 600 llLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~-~g~ 652 (1374)
+||||||++||+.+.+.+++.+++ .|+|+|+|||+++.+ ..+|++++|++ +|.
T Consensus 153 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 999999999999999999988754 378999999999876 57999999985 454
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=365.77 Aligned_cols=198 Identities=25% Similarity=0.388 Sum_probs=171.7
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----cccccEEEEe
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVP 519 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----~~~~~i~~v~ 519 (1374)
.++++|+++.|++++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+. ..+++|+|||
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 489999999996567899999999999999999999999999999999999999999999998641 1246899999
Q ss_pred cCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000647 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 520 Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
|++.+|. .|++|||.|+............+++.++++.++|+++.++.| .+||||||||++|||||+.+|+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LSgGq~QRvalARAL~~~P~ 154 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP--------RELSGGQRQRVAMGRAIVREPA 154 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999886 699999999854221111112356788999999999999987 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 599 illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
++|||||||+||+.+.+.+.+.+++ .|+|+|+|||+++.+ ..+|++++|++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~ 210 (356)
T PRK11650 155 VFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNG 210 (356)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999998887653 489999999999866 57999999975
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=339.98 Aligned_cols=191 Identities=30% Similarity=0.403 Sum_probs=166.2
Q ss_pred EeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC---ccccccEEEEecCC-
Q 000647 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---SDLNKEIFYVPQRP- 522 (1374)
Q Consensus 447 ~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~---~~~~~~i~~v~Q~p- 522 (1374)
++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+||+|
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~ 81 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVD 81 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChh
Confidence 67899988643679999999999999999999999999999999999999999999999864 22456799999998
Q ss_pred -CCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000647 523 -YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1374)
Q Consensus 523 -~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ill 601 (1374)
+++..|++||+.++.... .....++.++++.+++.++.++.| ..||||||||++|||||+++|+++|
T Consensus 82 ~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~lll 149 (205)
T cd03226 82 YQLFTDSVREELLLGLKEL----DAGNEQAETVLKDLDLYALKERHP--------LSLSGGQKQRLAIAAALLSGKDLLI 149 (205)
T ss_pred hhhhhccHHHHHhhhhhhc----CccHHHHHHHHHHcCCchhcCCCc--------hhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 456789999998864321 112356889999999998887766 5899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 602 LDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 602 LDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|+++++++
T Consensus 150 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 201 (205)
T cd03226 150 FDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLAN 201 (205)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999888764 4899999999999885 6999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=349.81 Aligned_cols=198 Identities=22% Similarity=0.336 Sum_probs=176.3
Q ss_pred cEEEeeeEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEE
Q 000647 444 YIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~-~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~ 516 (1374)
.|+++|+++.|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.++|.+ .++++.|+
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 5899999999974 4679999999999999999999999999999999999998 78999999964 24567899
Q ss_pred EEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHH
Q 000647 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 517 ~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal 593 (1374)
|+||+|++|++|+++|+.+.. ..+++++.++++.++|.++.+++|.+.++ +.|..||||||||++||||+
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~-------~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYG-------KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred EECCCcccchhhHHHHhhhcc-------CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999996321 13456788999999999999998865433 45789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 594 ~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+++|+++||||||++||+.+.+.+.+.+++ .++|+|+||||++.+..+|+|++|++
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~ 211 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEE 211 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecC
Confidence 999999999999999999999999998875 47999999999999989999999975
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-38 Score=364.81 Aligned_cols=211 Identities=20% Similarity=0.241 Sum_probs=172.4
Q ss_pred CCCCCCCCCCCEEEeeeEEeCCC-cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCC-----CCCCeEecCCC
Q 000647 1089 HKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLTKPSQ 1162 (1374)
Q Consensus 1089 ~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~-----~~~G~I~idg~ 1162 (1374)
..||. .+.|+|+||++.|++ .+++|+|+||+|++||++||+||||||||||+++|.|+++ |.+|+|.+||+
T Consensus 73 ~~~~~---~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~ 149 (329)
T PRK14257 73 EDFNH---ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGT 149 (329)
T ss_pred CCCCc---CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 35776 688999999998874 5689999999999999999999999999999999999997 46999999999
Q ss_pred ccccc----cCCcccEEEecCCCCCCCcchHHHhccCCCh---hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCC
Q 000647 1163 HIDEE----AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 1235 (1374)
Q Consensus 1163 dI~~~----~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~---~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L 1235 (1374)
+|... ..+|.+++||||+|.+|++|+++||.|+... ++.+ ..++...++++.++|
T Consensus 150 ~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~------------------~~~~~~~~~l~~~~L 211 (329)
T PRK14257 150 NTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRK------------------ILEKIVEKSLKSAAL 211 (329)
T ss_pred EccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHH------------------HHHHHHHHHHHHcCC
Confidence 99742 3567789999999999999999999864210 0100 011224556777776
Q ss_pred chhhhhhccCCcccc-ccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEE
Q 000647 1236 SYLLEREEVGWDANL-NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGI 1314 (1374)
Q Consensus 1236 ~~~v~~~~~Gldt~~-~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~Pkill 1314 (1374)
++. +++.+ ..+.+||||||||+|| |||++++|+|+|
T Consensus 212 ~~~-------l~~~~~~~~~~LSgGqkqRl~L------------------------------------ARAl~~~p~IlL 248 (329)
T PRK14257 212 WDE-------VKDDLDKAGNALSGGQQQRLCI------------------------------------ARAIALEPEVLL 248 (329)
T ss_pred cch-------hhhhhhCCcccCCHHHHHHHHH------------------------------------HHHHHhCCCEEE
Confidence 432 23333 3578899999999999 999999999999
Q ss_pred eeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchh-hccceEEEEcC
Q 000647 1315 LDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIP-FHSLELRLIDG 1363 (1374)
Q Consensus 1315 LDEaTSaLD~~~e~~l~~~~~~--~~~TvI~IaHRl~~i~-~~~~~l~l~~g 1363 (1374)
||||||+||.++.+.+++.++. .++|+|+|||++.++. +.|+++.+.+|
T Consensus 249 LDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G 300 (329)
T PRK14257 249 MDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQG 300 (329)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999888876653 4799999999998865 59999999655
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=311.42 Aligned_cols=194 Identities=25% Similarity=0.346 Sum_probs=169.1
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC----ccccccEEEEec
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~----~~~~~~i~~v~Q 520 (1374)
+.+++|.+.|.. .=-.++++|++||+++|+||||||||||+++|+|+..|.+|+|.++|.+ ....+-++.++|
T Consensus 2 l~L~~V~~~y~~---~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 2 LALDDVRFSYGH---LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred ccccceEEeeCc---ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 567888888843 2236789999999999999999999999999999999999999999976 223567999999
Q ss_pred CCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000647 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1374)
Q Consensus 521 ~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1374)
+..+|. -||.+||-+|....-.......++++.++.++||..+.+|+| .+||||||||+||||+|+++-+|
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP--------~~LSGGqRQRvALARclvR~~Pi 150 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP--------GELSGGQRQRVALARCLVREQPI 150 (231)
T ss_pred ccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc--------cccCchHHHHHHHHHHHhccCCe
Confidence 999997 599999999876543334455678899999999999999999 68999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHH----HhcCCEEEEEccChhhHh-hccEEEEecC
Q 000647 600 AILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 600 llLDEptsaLD~~~~~~i~~~l----~~~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++||||+|+||+..+.++...+ .+.+.|+++|||.++.+. .+|+++++++
T Consensus 151 lLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~ 205 (231)
T COG3840 151 LLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDN 205 (231)
T ss_pred EEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeC
Confidence 9999999999999998887654 457899999999998875 7899999986
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=324.32 Aligned_cols=166 Identities=54% Similarity=0.999 Sum_probs=153.4
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCccccccEEEEecCCCC
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 524 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~~~~~~i~~v~Q~p~l 524 (1374)
++++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++. ++++|++|+|++
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----~~i~~~~q~~~~ 75 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----EDLLFLPQRPYL 75 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----ceEEEECCCCcc
Confidence 468999999976678999999999999999999999999999999999999999999999873 579999999998
Q ss_pred CcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000647 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1374)
Q Consensus 525 ~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDE 604 (1374)
+..|++||+.++ . ..+||||||||++||||++++|+++||||
T Consensus 76 ~~~tv~~nl~~~------------------------------~--------~~~LS~G~~~rv~laral~~~p~~lllDE 117 (166)
T cd03223 76 PLGTLREQLIYP------------------------------W--------DDVLSGGEQQRLAFARLLLHKPKFVFLDE 117 (166)
T ss_pred ccccHHHHhhcc------------------------------C--------CCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 889999999763 1 15799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCEEEEEccChhhHhhccEEEEecCCCce
Q 000647 605 CTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEW 653 (1374)
Q Consensus 605 ptsaLD~~~~~~i~~~l~~~~~TiI~vtH~~~~~~~~d~il~l~~~g~~ 653 (1374)
||++||+++.+.+.+.+++.+.|+|++||+++....+|++++++++|+|
T Consensus 118 Pt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~~~d~i~~l~~~~~~ 166 (166)
T cd03223 118 ATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDRVLDLDGEGGW 166 (166)
T ss_pred CccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHhhCCEEEEEcCCCCC
Confidence 9999999999999999988889999999999988899999999988765
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=328.14 Aligned_cols=192 Identities=24% Similarity=0.288 Sum_probs=162.7
Q ss_pred CCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCC-----CeEecCCCccccc----c
Q 000647 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVS-----GSLTKPSQHIDEE----A 1168 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~-----G~I~idg~dI~~~----~ 1168 (1374)
..++++|++++|- .+.+|+|+|++|++++..|++|||||||||+++.|-|+.|..+ |+|.++|+||.+. .
T Consensus 6 ~~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 6 PAIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred ceeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 4689999999994 6789999999999999999999999999999999999999876 9999999999875 3
Q ss_pred CCcccEEEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcc
Q 000647 1169 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1374)
Q Consensus 1169 ~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt 1248 (1374)
.+|+++++|.|.|--|+.||+||+.||... ++.. + +..|+-+...|+.+.||+.+... |+.
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~----------~g~~----~--~~ldeiVe~sLk~AaLWdEVKDr---L~~ 145 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRL----------HGIK----D--KELDEIVESSLKKAALWDEVKDR---LHK 145 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHh----------hccc----h--HHHHHHHHHHHHHhHhHHHhHHH---hhC
Confidence 689999999999999999999999998531 1110 0 23566678889999999877542 332
Q ss_pred ccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHH
Q 000647 1249 NLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEE 1328 (1374)
Q Consensus 1249 ~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~ 1328 (1374)
.+..||||||||||| ||||--+|+||||||||||||+-+-.
T Consensus 146 ---sa~~LSGGQQQRLcI------------------------------------ARalAv~PeVlLmDEPtSALDPIsT~ 186 (253)
T COG1117 146 ---SALGLSGGQQQRLCI------------------------------------ARALAVKPEVLLMDEPTSALDPISTL 186 (253)
T ss_pred ---CccCCChhHHHHHHH------------------------------------HHHHhcCCcEEEecCcccccCchhHH
Confidence 245699999999999 99999999999999999999998766
Q ss_pred HHHHHHHh--cCceEEEecCCC
Q 000647 1329 QLYRLAKD--MGITFVTSSQRP 1348 (1374)
Q Consensus 1329 ~l~~~~~~--~~~TvI~IaHRl 1348 (1374)
.+.+++.+ .+.|+|+|+|.+
T Consensus 187 kIEeLi~eLk~~yTIviVTHnm 208 (253)
T COG1117 187 KIEELITELKKKYTIVIVTHNM 208 (253)
T ss_pred HHHHHHHHHHhccEEEEEeCCH
Confidence 66555543 589999999987
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=335.65 Aligned_cols=204 Identities=25% Similarity=0.319 Sum_probs=167.4
Q ss_pred EEEeeeEEeCCCc---ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc------CC
Q 000647 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------GS 1170 (1374)
Q Consensus 1100 I~f~~V~~~yp~~---~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~------~~ 1170 (1374)
|+++||+..|..+ ..+|+++||+|++||.|+|+||||||||||+++|.++-.|++|+|.++|.|+..++ ..
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 5789999977653 57999999999999999999999999999999999999999999999999998772 34
Q ss_pred cccEEEecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccc
Q 000647 1171 GCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 1249 (1374)
Q Consensus 1171 r~~i~~VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~ 1249 (1374)
|..|+||+|+..|.+. |++|||..|.... +.. .........+.++.+||.+....
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~----------~~~------~~~~~~~~~~l~~~lgl~~~~~~-------- 137 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIA----------GKS------AGRRKRAAEELLEVLGLEDRLLK-------- 137 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHc----------CCC------hhHHHHHHHHHHHhcCChhhhcc--------
Confidence 5679999999998655 9999998664210 000 00012234566777777644331
Q ss_pred cccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHH
Q 000647 1250 LNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQ 1329 (1374)
Q Consensus 1250 ~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~ 1329 (1374)
....+||||||||+|| ||||+.+|+|++.||||+|||.++.+.
T Consensus 138 -~~p~eLSGGqqQRVAI------------------------------------ARAL~~~P~iilADEPTgnLD~~t~~~ 180 (226)
T COG1136 138 -KKPSELSGGQQQRVAI------------------------------------ARALINNPKIILADEPTGNLDSKTAKE 180 (226)
T ss_pred -CCchhcCHHHHHHHHH------------------------------------HHHHhcCCCeEEeeCccccCChHHHHH
Confidence 1246799999999999 999999999999999999999999987
Q ss_pred HHHHHH----hcCceEEEecCCCCchhhccceEEEEcCC
Q 000647 1330 LYRLAK----DMGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1330 l~~~~~----~~~~TvI~IaHRl~~i~~~~~~l~l~~g~ 1364 (1374)
+.++++ +.|.|+|+|||.+.+-.+.|+++.+.||+
T Consensus 181 V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 181 VLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGK 219 (226)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCe
Confidence 766544 35899999999999999999999998886
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=341.15 Aligned_cols=196 Identities=30% Similarity=0.440 Sum_probs=166.5
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC----ccccccEEEEec
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~----~~~~~~i~~v~Q 520 (1374)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYG-SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeC-CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 46899999986 4679999999999999999999999999999999999999999999999864 123467999999
Q ss_pred CCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000647 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1374)
Q Consensus 521 ~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1374)
+|.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.+|++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP--------HELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 998775 699999987532111001112345778999999998888766 58999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 600 llLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+||||||++||+.+.+.+++.+++ .|+|+|++||+++.+ ..+|+++++++
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~ 206 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNE 206 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEEC
Confidence 999999999999999999988764 389999999999886 57999999975
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=340.36 Aligned_cols=197 Identities=30% Similarity=0.438 Sum_probs=168.3
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc---------cccccE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKEI 515 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~---------~~~~~i 515 (1374)
++++|+++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 78999999986456899999999999999999999999999999999999999999999998541 135679
Q ss_pred EEEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 516 ~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
+|+||+|.++. .|++||+.++...........++++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~ 153 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP--------EQLSGGEQQRVAIARAIV 153 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHHHHh
Confidence 99999998876 699999987532111001112356788999999988777766 589999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 154 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~ 212 (214)
T TIGR02673 154 NSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDD 212 (214)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecC
Confidence 99999999999999999999999888764 4899999999999886 6899999975
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=361.43 Aligned_cols=198 Identities=26% Similarity=0.398 Sum_probs=172.4
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC----ccccccEEEE
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYV 518 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~----~~~~~~i~~v 518 (1374)
..|+++|+++.|+ +..+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ...+++|+||
T Consensus 5 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 5 NFVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred cEEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4799999999995 4679999999999999999999999999999999999999999999999864 1224689999
Q ss_pred ecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000647 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1374)
Q Consensus 519 ~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1374)
||++.+|. .|++|||.|+............+++.++++.+++.++.++.| .+||||||||++|||||+.+|
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~--------~~LSgGq~QRVaLARaL~~~P 155 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV--------DQISGGQQQRVALARALILKP 155 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHHHHcCC
Confidence 99999886 599999999854221111123457788999999999998887 689999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 598 KFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 598 ~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+++|||||||+||+...+.+.+.+++ .|+|+|+|||+.+.+ ..+|+|++|++
T Consensus 156 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~ 212 (351)
T PRK11432 156 KVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNK 212 (351)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999998887753 489999999999886 67999999986
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=340.11 Aligned_cols=197 Identities=25% Similarity=0.337 Sum_probs=167.8
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc---------cccccE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKEI 515 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~---------~~~~~i 515 (1374)
++++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 46899999997556799999999999999999999999999999999999999999999998531 134679
Q ss_pred EEEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 516 ~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
+|+||+|.++. .|++||+.++...........++++.++++.+++++..++.+ .+||||||||++||||++
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~ 152 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP--------AELSGGEQQRVAIARAIV 152 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh--------hhcCHHHHHHHHHHHHHH
Confidence 99999998887 599999987532111111112346778999999998877766 589999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++|+++||||||++||+++.+.+.+.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 211 (214)
T cd03292 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALER 211 (214)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999887764 4899999999999886 5899999975
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=345.16 Aligned_cols=196 Identities=27% Similarity=0.365 Sum_probs=166.3
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc---------cccccE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKEI 515 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~---------~~~~~i 515 (1374)
++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 46899999985 46799999999999999999999999999999999999999999999998541 235679
Q ss_pred EEEecCCCCCcC-CHHHHhcCCCCCCc-ccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000647 516 FYVPQRPYTAVG-TLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 516 ~~v~Q~p~l~~~-Tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1374)
+|+||+|.++.. |++||+.++..... .......+++.++++.+++.+..++.+ .+||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~ia~al 151 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP--------AELSGGMKKRVALARAL 151 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHHH
Confidence 999999988875 99999987532110 001112345678899999988777765 58999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 594 ~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+++|+++||||||++||+.+.+.+++.+++ .|+|+|+|||+++.+. .+|++++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~ 212 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYD 212 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999888764 3899999999999875 6999999975
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=351.63 Aligned_cols=198 Identities=24% Similarity=0.332 Sum_probs=170.7
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~ 517 (1374)
.++++|+++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 58999999999755679999999999999999999999999999999999999999999999854 123567999
Q ss_pred EecCC--CCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000647 518 VPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1374)
Q Consensus 518 v~Q~p--~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1374)
+||+| .++..|++||+.++............+++.++++.++|.+..++.| .+||||||||++|||||+.
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP--------YHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh--------hhCCHHHHHHHHHHHHHHc
Confidence 99998 5677899999998632111111112346788999999998888877 5899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 596 ~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+ +.||++++|++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~ 213 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKE 213 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999888754 489999999999987 57999999975
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=338.28 Aligned_cols=194 Identities=32% Similarity=0.449 Sum_probs=165.3
Q ss_pred EeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-ccccccEEEEecCCCC-
Q 000647 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRPYT- 524 (1374)
Q Consensus 447 ~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-~~~~~~i~~v~Q~p~l- 524 (1374)
++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+||+|.+
T Consensus 2 ~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 2 VEDLTVSYGG-HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred cccceeEECC-EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 6789998864 679999999999999999999999999999999999999999999999865 2345689999999976
Q ss_pred --CcCCHHHHhcCCCCCCc----ccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000647 525 --AVGTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 525 --~~~Tv~eni~~~~~~~~----~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
+..|++||+.++..... .......+++.++++.+++.++.++.+ .+||||||||++|||||+++|+
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~p~ 152 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI--------GELSGGQQQRVLLARALVQDPD 152 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc--------ccCCHHHHHHHHHHHHHHcCCC
Confidence 45799999987643210 001112356788999999998887765 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 599 illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 207 (213)
T cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR 207 (213)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcC
Confidence 9999999999999999999887764 4789999999999875 6899999975
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=339.34 Aligned_cols=197 Identities=25% Similarity=0.361 Sum_probs=166.7
Q ss_pred EEEeeeEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc------c---cc
Q 000647 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D---LN 512 (1374)
Q Consensus 445 i~~~~v~~~~~~~---~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~------~---~~ 512 (1374)
++++||++.|+++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. + ++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 6899999999642 4799999999999999999999999999999999999999999999998541 1 12
Q ss_pred -ccEEEEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHH
Q 000647 513 -KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1374)
Q Consensus 513 -~~i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1374)
+.++|+||+|.++. .|++||+.++............+++.++++.+++++..++.+ ..||||||||++||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la 153 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP--------SELSGGERQRVAIA 153 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHH
Confidence 57999999998875 699999987432111000112345778999999988877765 68999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHhhccEEEEecC
Q 000647 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 591 Ral~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
||++++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+..+|++++|++
T Consensus 154 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~ 216 (221)
T TIGR02211 154 RALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKD 216 (221)
T ss_pred HHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeC
Confidence 999999999999999999999999999887753 37899999999999888999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=341.46 Aligned_cols=199 Identities=24% Similarity=0.353 Sum_probs=168.4
Q ss_pred CcEEEeeeEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-c--------
Q 000647 443 NYIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-D-------- 510 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~---~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~-~-------- 510 (1374)
+.++++||++.|+++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 368999999999753 4799999999999999999999999999999999999999999999998641 1
Q ss_pred c-cccEEEEecCCCCCcC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHH
Q 000647 511 L-NKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1374)
Q Consensus 511 ~-~~~i~~v~Q~p~l~~~-Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1374)
. ++.++|+||+|.++.. |++||+.++............+++.++++.+++.+..++.+ .+||||||||++
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgG~~qrl~ 155 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP--------SELSGGERQRVA 155 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCh--------hhCCHHHHHHHH
Confidence 1 2579999999988764 99999987432111001112346788999999988777765 689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHhhccEEEEecC
Q 000647 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 589 lARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
||||++++|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+..+|++++|++
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~ 220 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRD 220 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEEC
Confidence 99999999999999999999999999999887754 48999999999999988899999975
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=338.26 Aligned_cols=195 Identities=29% Similarity=0.416 Sum_probs=164.0
Q ss_pred EeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEe
Q 000647 447 FSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVP 519 (1374)
Q Consensus 447 ~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~ 519 (1374)
++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+|
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVF 81 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEe
Confidence 67899988642 679999999999999999999999999999999999999999999999853 12356799999
Q ss_pred cCCC--CCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000647 520 QRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1374)
Q Consensus 520 Q~p~--l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1374)
|+|. ++..|++||+.++...........+.++.++++.+++.+..++.+ ..||||||||++|||||+++|
T Consensus 82 q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~laral~~~p 153 (211)
T cd03225 82 QNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP--------FTLSGGQKQRVAIAGVLAMDP 153 (211)
T ss_pred cChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHHHHHHHHHHhcCC
Confidence 9983 567899999987532110000112345678899999988877765 689999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHhh-ccEEEEecC
Q 000647 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDG 649 (1374)
Q Consensus 598 ~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~~-~d~il~l~~ 649 (1374)
+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+.. +|+++++++
T Consensus 154 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 154 DILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999888754 47899999999998864 999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=338.76 Aligned_cols=197 Identities=24% Similarity=0.310 Sum_probs=167.4
Q ss_pred EEEeeeEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----ccccccEE
Q 000647 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIF 516 (1374)
Q Consensus 445 i~~~~v~~~~~~~---~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~~~~~~i~ 516 (1374)
++++|+++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 6899999999753 179999999999999999999999999999999999999999999999864 13456899
Q ss_pred EEecCCCCCcC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000647 517 YVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1374)
Q Consensus 517 ~v~Q~p~l~~~-Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1374)
|+||+|.++.. |++||+.++............+++.++++.+++.+..++.+ .+||||||||++||||++.
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV--------GGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh--------hhcCHHHHHHHHHHHHHhc
Confidence 99999988874 99999976432111001112356788999999998877755 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 596 ~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .+|+++.+++
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~ 211 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHR 211 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999888764 4899999999998764 7999999975
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=353.98 Aligned_cols=200 Identities=22% Similarity=0.273 Sum_probs=168.6
Q ss_pred CCcEEEeeeEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC--c------
Q 000647 442 ANYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--S------ 509 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~----~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~--~------ 509 (1374)
...|+++|+++.|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 4579999999999742 469999999999999999999999999999999999999999999999743 1
Q ss_pred --------------cccccEEEEecCC--CCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCh-hHHhcCCCCcc
Q 000647 510 --------------DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKE 572 (1374)
Q Consensus 510 --------------~~~~~i~~v~Q~p--~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~~ 572 (1374)
.++++++||+|+| +++..|++|||.++.............++.++++.++|. ++.++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---- 174 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP---- 174 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc----
Confidence 2356799999998 688889999998864211110111224567789999996 5666655
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhH-hhccEEEEec
Q 000647 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLD 648 (1374)
Q Consensus 573 ~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~-~~~d~il~l~ 648 (1374)
.+||||||||++|||||+++|+++||||||++||+.+++.+++.+++ .|+|+|+|||+++.+ ..||++++|+
T Consensus 175 ----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~ 250 (320)
T PRK13631 175 ----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMD 250 (320)
T ss_pred ----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 68999999999999999999999999999999999999999988753 489999999999976 5799999998
Q ss_pred C
Q 000647 649 G 649 (1374)
Q Consensus 649 ~ 649 (1374)
+
T Consensus 251 ~ 251 (320)
T PRK13631 251 K 251 (320)
T ss_pred C
Confidence 6
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=342.82 Aligned_cols=199 Identities=25% Similarity=0.325 Sum_probs=168.0
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-ccccccEEEEecCCC
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRPY 523 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-~~~~~~i~~v~Q~p~ 523 (1374)
++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ......++|+||++.
T Consensus 2 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 2 LQISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred EEEEEEEEEeC-CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 78999999986 4679999999999999999999999999999999999999999999999864 123356999999998
Q ss_pred CCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000647 524 TAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602 (1374)
Q Consensus 524 l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illL 602 (1374)
++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+++|+++||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGq~qrl~laral~~~p~lllL 152 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYI--------WQLSGGQRQRVGIARALAANPQLLLL 152 (255)
T ss_pred cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 876 699999987532111101112346788999999988777765 68999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC-CCc
Q 000647 603 DECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG-EGE 652 (1374)
Q Consensus 603 DEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~-~g~ 652 (1374)
||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .||++++|++ +|.
T Consensus 153 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 153 DEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGR 208 (255)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcE
Confidence 999999999999999887754 3899999999999874 6999999985 343
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=304.05 Aligned_cols=198 Identities=30% Similarity=0.393 Sum_probs=171.7
Q ss_pred cEEEeeeEEEcCC---CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----c----c-
Q 000647 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S----D- 510 (1374)
Q Consensus 444 ~i~~~~v~~~~~~---~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~----~- 510 (1374)
.|+++++++.-+. .-.+|++++|.|++||.++||||||||||||+-+++|+-.|++|+|.+.|++ . .
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 5778888875443 2469999999999999999999999999999999999999999999999864 1 1
Q ss_pred ccccEEEEecCCCC-CcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHH
Q 000647 511 LNKEIFYVPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1374)
Q Consensus 511 ~~~~i~~v~Q~p~l-~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1374)
..+++|||+|...+ ++.|-.||+..|..-..+..........+.|+.+||.+-+..+| .+||||||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP--------~qLSGGEQQRVAi 157 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP--------AQLSGGEQQRVAL 157 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc--------cccCchHHHHHHH
Confidence 24789999999864 66899999999976554333333455778999999999998888 6999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHH----HhcCCEEEEEccChhhHhhccEEEEecC
Q 000647 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 590 ARal~~~p~illLDEptsaLD~~~~~~i~~~l----~~~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
||||...|+++|-||||-+||.++.+++.+.+ ++.|.|.|+||||+.+...|+|++.+..
T Consensus 158 ARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~ 221 (228)
T COG4181 158 ARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRS 221 (228)
T ss_pred HHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeec
Confidence 99999999999999999999999999988865 4569999999999999999999999975
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=337.07 Aligned_cols=197 Identities=25% Similarity=0.337 Sum_probs=166.9
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc---------cccccE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKEI 515 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~---------~~~~~i 515 (1374)
++++|+++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 78999999996557899999999999999999999999999999999999999999999998541 135689
Q ss_pred EEEecCCCC-CcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 516 FYVPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 516 ~~v~Q~p~l-~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
+|+||+|.+ +..|++||+.++............+++.++++.+++.+..++.+ .+||||||||++||||++
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~ 153 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP--------IQLSGGEQQRVGIARAVV 153 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc--------hhCCHHHHHHHHHHHHHH
Confidence 999999986 45799999987532111101112235678899999988877765 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+. .+|+++++++
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSD 212 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999998887764 4789999999999886 5899999975
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=340.87 Aligned_cols=197 Identities=27% Similarity=0.390 Sum_probs=167.1
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----cccccEEEEe
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVP 519 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----~~~~~i~~v~ 519 (1374)
.++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 3789999999964 6799999999999999999999999999999999999999999999998541 1245799999
Q ss_pred cCCCCCc-CCHHHHhcCCCCCCcc----cCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 520 QRPYTAV-GTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 520 Q~p~l~~-~Tv~eni~~~~~~~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
|+|.++. .|++||+.++...... ......+++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP--------AQLSGGQRQRVALARALA 152 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh--------hhCCHHHHHHHHHHHHHh
Confidence 9998875 6999999876422110 00112345678899999988877765 589999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
++|+++||||||++||+++.+.+.+.+++ .|+|+|++||+++.+ ..+|++++|++
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~ 212 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNK 212 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999887764 378999999999976 56999999975
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=349.04 Aligned_cols=198 Identities=28% Similarity=0.362 Sum_probs=169.8
Q ss_pred cEEEeeeEEEcCCC--CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccE
Q 000647 444 YIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~--~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i 515 (1374)
.++++||++.|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 58999999999742 469999999999999999999999999999999999999999999999864 1245689
Q ss_pred EEEecCCC--CCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000647 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 516 ~~v~Q~p~--l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1374)
+|+||+|. ++..|++|||.++...........++++.++++.++|+++.++.| .+||||||||++|||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LSgGq~qrv~lAral 155 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP--------ARLSGGQKQRVAIAGAV 155 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 99999983 556799999998643211111112346788999999999888876 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHhhccEEEEecC
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 594 ~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+++|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+..+|+++++++
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~ 215 (279)
T PRK13650 156 AMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKN 215 (279)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 999999999999999999999999887753 38999999999999889999999975
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=335.77 Aligned_cols=196 Identities=24% Similarity=0.375 Sum_probs=166.0
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----cccccEEEEec
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 520 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----~~~~~i~~v~Q 520 (1374)
++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+||
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 468999999864 6799999999999999999999999999999999999999999999998541 12357999999
Q ss_pred CCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000647 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1374)
Q Consensus 521 ~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1374)
++.++. .|++||+.++...........++++.++++.+++.+..++.+ .+||||||||++||||++++|++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP--------KQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 998875 699999987532111111112345678899999998888766 68999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 600 llLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .+|+++++++
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 206 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMND 206 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 999999999999999999888754 3899999999998875 6899999975
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=350.38 Aligned_cols=197 Identities=25% Similarity=0.357 Sum_probs=166.6
Q ss_pred EEEeeeEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc--------ccc
Q 000647 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLN 512 (1374)
Q Consensus 445 i~~~~v~~~~~~~----~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~--------~~~ 512 (1374)
++++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. .++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 7899999999753 4799999999999999999999999999999999999999999999998541 235
Q ss_pred ccEEEEecCC--CCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCh--hHHhcCCCCccccCCCCCChhHHHHHH
Q 000647 513 KEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLG 588 (1374)
Q Consensus 513 ~~i~~v~Q~p--~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1374)
++++||||+| .++..|++||+.++............+++.++++.++|. ++.++.+ ..||||||||++
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~--------~~LSgGq~qrv~ 154 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSP--------FELSGGQKRRVA 154 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCc--------ccCCHHHHHHHH
Confidence 6899999998 567789999998753211111111234577899999997 5566655 689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 589 lARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|||||+.+|+++||||||++||+.+...+.+.+++ .|+|+|+|||+++.+ ..||+++++++
T Consensus 155 iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~ 220 (287)
T PRK13637 155 IAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNK 220 (287)
T ss_pred HHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999887753 389999999999987 57999999975
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=358.89 Aligned_cols=197 Identities=25% Similarity=0.387 Sum_probs=171.8
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC----ccccccEEEEe
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~----~~~~~~i~~v~ 519 (1374)
.++++|+++.|+ +..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ...++.++|||
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 4 YLSIDNIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 589999999996 4679999999999999999999999999999999999999999999999864 11346899999
Q ss_pred cCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000647 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 520 Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
|++.+|. .|++||+.|+.............++.++++.++|+++.++.| .+||||||||++|||||+.+|+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~--------~~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP--------GQLSGGQQQRVALARALATSPG 154 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999886 699999999754221111122456889999999999999887 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 599 illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
++|||||||+||..+.+.+.+.+++ .|+|+|+|||+++.+ ..+|++++|++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~ 210 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNH 210 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999887754 489999999999976 57999999986
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=341.52 Aligned_cols=197 Identities=24% Similarity=0.352 Sum_probs=167.4
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc---------cccccE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKEI 515 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~---------~~~~~i 515 (1374)
++++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 68999999986356799999999999999999999999999999999999999999999998541 135679
Q ss_pred EEEecCCCCCc-CCHHHHhcCCCCCCc--------ccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHH
Q 000647 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQ--------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1374)
Q Consensus 516 ~~v~Q~p~l~~-~Tv~eni~~~~~~~~--------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQR 586 (1374)
+|+||++.++. .|++||+.++..... ......++++.++++.+++.+..++.+ ..||||||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qr 153 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA--------DQLSGGQQQR 153 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHHH
Confidence 99999998776 699999987542110 001122456788899999988777755 6899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 587 lalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
++|||||+++|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+ ..+|+++++++
T Consensus 154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKA 221 (243)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 9999999999999999999999999999999887754 378999999999987 57999999975
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=337.91 Aligned_cols=197 Identities=21% Similarity=0.248 Sum_probs=167.1
Q ss_pred EEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----ccccccEEEE
Q 000647 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1374)
Q Consensus 445 i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~~~~~~i~~v 518 (1374)
|+++||++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..++++++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 4689999999653 689999999999999999999999999999999999999999999999864 1245679999
Q ss_pred ecCCCCC-cCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000647 519 PQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1374)
Q Consensus 519 ~Q~p~l~-~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1374)
||+|.++ ..|++||+.++............+++.++++.+++.+..++.+ .+||||||||++||||++.+|
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p 152 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA--------RTLSGGMKRKLSLAIALIGGP 152 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh--------hhCCHHHHHHHHHHHHHhcCC
Confidence 9999887 5799999987532111101112345778899999988777655 589999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 598 KFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 598 ~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|+++++++
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 207 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSD 207 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999998865 3689999999999885 6999999975
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=340.08 Aligned_cols=192 Identities=21% Similarity=0.309 Sum_probs=169.1
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-ccccccEEEEecC
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQR 521 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-~~~~~~i~~v~Q~ 521 (1374)
..|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+||+
T Consensus 11 ~~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 11 TPLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CcEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence 4699999999985 4679999999999999999999999999999999999999999999998754 3456789999999
Q ss_pred CCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000647 522 PYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1374)
Q Consensus 522 p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~il 600 (1374)
|.++. .|++||+.++... ..++++.++++.+++.+..++.+ .+||||||||++|||||+++|+++
T Consensus 90 ~~l~~~~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGLKG------QWRDAALQALAAVGLADRANEWP--------AALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred ccCCCCCcHHHHHHhcccc------hHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 98876 6999999876321 12456788999999988877765 689999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 601 ILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 601 lLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
||||||++||+.+...+.+.+++ .++|+|+|||+++.+ ..+|+++++++
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~ 209 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEE 209 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999887753 479999999999986 57999999985
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=336.71 Aligned_cols=199 Identities=28% Similarity=0.357 Sum_probs=168.9
Q ss_pred CcEEEeeeEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-c--------
Q 000647 443 NYIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-D-------- 510 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~---~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~-~-------- 510 (1374)
..++++|+++.|+++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 468999999999753 3699999999999999999999999999999999999999999999998541 1
Q ss_pred c-cccEEEEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHH
Q 000647 511 L-NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1374)
Q Consensus 511 ~-~~~i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1374)
. ++.++|+||+|.++. .|+.||+.++............+++.++++.+++.+..++.| ..||||||||++
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Ge~qrl~ 156 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP--------AQLSGGEQQRVA 156 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh--------hhCCHHHHHHHH
Confidence 1 257999999998877 499999987432111111122456788999999998888766 589999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHhhccEEEEecC
Q 000647 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 589 lARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
|||||+++|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+..+|+++++++
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~ 221 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVN 221 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999887753 37899999999999888999999975
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=352.58 Aligned_cols=206 Identities=23% Similarity=0.231 Sum_probs=169.1
Q ss_pred CCCCcEEEeeeEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc-----CCccEEEeCCCCc----
Q 000647 440 SEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS---- 509 (1374)
Q Consensus 440 ~~~~~i~~~~v~~~~~~-~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~-----~~~G~I~~~g~~~---- 509 (1374)
+..+.|+++|+++.|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 76 ~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred CcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 44568999999999964 4579999999999999999999999999999999999996 5799999998751
Q ss_pred ----cccccEEEEecCCCCCcCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHH
Q 000647 510 ----DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQ 584 (1374)
Q Consensus 510 ----~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqk 584 (1374)
.+++.++||||+|+++++|++|||.|+....... +...++.+.++++.++|.+.++.. ..+.+.+||||||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~----~~~~~~~LSgGqk 231 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDD----LDKAGNALSGGQQ 231 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhh----hhCCcccCCHHHH
Confidence 3467899999999999999999999853211100 001112356778888875433211 1123579999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhh-ccEEEEecC
Q 000647 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAF-HDVVLSLDG 649 (1374)
Q Consensus 585 QRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~-~d~il~l~~ 649 (1374)
||++||||++++|+++||||||+|||+++.+.+.+.+++ .++|+|+|||+++.+.. +|+|++|++
T Consensus 232 qRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~ 299 (329)
T PRK14257 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQ 299 (329)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999888764 37999999999999875 999999986
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=350.40 Aligned_cols=197 Identities=19% Similarity=0.266 Sum_probs=167.1
Q ss_pred EEEeeeEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------------
Q 000647 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------------ 508 (1374)
Q Consensus 445 i~~~~v~~~~~~~----~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------------ 508 (1374)
|+++|+++.|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 7899999999753 369999999999999999999999999999999999999999999997642
Q ss_pred ------------------ccccccEEEEecCC--CCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCh-hHHhcC
Q 000647 509 ------------------SDLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRY 567 (1374)
Q Consensus 509 ------------------~~~~~~i~~v~Q~p--~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~ 567 (1374)
..+++.|+||||+| .++..|++|||.|+...........++++.++++.++|. ++.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 162 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRS 162 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC
Confidence 12356799999987 567789999999864321111112235678899999996 677776
Q ss_pred CCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhH-hhccE
Q 000647 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDV 643 (1374)
Q Consensus 568 ~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~-~~~d~ 643 (1374)
| .+||||||||++|||||+.+|+++||||||++||+.....+.+.+++ .|+|+|+|||+++.+ ..+|+
T Consensus 163 ~--------~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adr 234 (305)
T PRK13651 163 P--------FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR 234 (305)
T ss_pred h--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCE
Confidence 6 68999999999999999999999999999999999999998887754 489999999999876 68999
Q ss_pred EEEecC
Q 000647 644 VLSLDG 649 (1374)
Q Consensus 644 il~l~~ 649 (1374)
|++|++
T Consensus 235 v~vl~~ 240 (305)
T PRK13651 235 TIFFKD 240 (305)
T ss_pred EEEEEC
Confidence 999975
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=357.24 Aligned_cols=199 Identities=26% Similarity=0.405 Sum_probs=171.9
Q ss_pred CCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----cccccEEE
Q 000647 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFY 517 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----~~~~~i~~ 517 (1374)
...++++|+++.|+ +.++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ..++.++|
T Consensus 12 ~~~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 12 SPLVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CceEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 34699999999985 46799999999999999999999999999999999999999999999998641 12467999
Q ss_pred EecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccC
Q 000647 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1374)
Q Consensus 518 v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~ 596 (1374)
|||++.+|. .||+|||.|+............+++.++++.++|.++.++.| .+||||||||++|||||+.+
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p--------~~LSgGq~QRVaLARaL~~~ 162 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP--------HQLSGGQQQRVAIARAVVNK 162 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh--------hhCCHHHHHHHHHHHHHhcC
Confidence 999998886 599999999864221111112346788999999999999988 68999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 597 PKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 597 p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|+++|||||||+||....+.+.+.+++ .|+|+|+|||+++.+ ..+|+|++|++
T Consensus 163 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~ 220 (375)
T PRK09452 163 PKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRD 220 (375)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999887753 489999999999875 57999999985
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=339.80 Aligned_cols=197 Identities=23% Similarity=0.354 Sum_probs=167.0
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc---------cccccE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKEI 515 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~---------~~~~~i 515 (1374)
++++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 46899999986446799999999999999999999999999999999999999999999998641 134679
Q ss_pred EEEecCCCCCc-CCHHHHhcCCCCCC--------cccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHH
Q 000647 516 FYVPQRPYTAV-GTLRDQLIYPLTSD--------QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1374)
Q Consensus 516 ~~v~Q~p~l~~-~Tv~eni~~~~~~~--------~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQR 586 (1374)
+|+||++.++. .|++||+.++.... ........+++.++++.+++.+..++.+ .+||||||||
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qr 152 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA--------DQLSGGQQQR 152 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc--------ccCCHHHHHH
Confidence 99999998776 69999998753211 0001122446778899999988777655 6899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 587 lalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++||||++++|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 153 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~ 220 (241)
T cd03256 153 VAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKD 220 (241)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999887764 3899999999999987 7999999975
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=336.40 Aligned_cols=199 Identities=26% Similarity=0.422 Sum_probs=170.6
Q ss_pred EEEeeeEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEE
Q 000647 445 IEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1374)
Q Consensus 445 i~~~~v~~~~~~-~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~ 517 (1374)
++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 468999999864 3679999999999999999999999999999999999999999999999864 124567999
Q ss_pred EecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHc
Q 000647 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 518 v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~ 594 (1374)
+||+++++..|++||+.++... ....++.+.++..++.++++.+|.+... ....+||||||||++||||++
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~------~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 154 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPG------MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI 154 (237)
T ss_pred EcCCchhccchHHHHhhccCCC------CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999999989999999886421 2234556677778888887776543222 235789999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+..+|+++++++
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~ 211 (237)
T cd03252 155 HNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEK 211 (237)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999998865 47899999999999988999999985
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=356.40 Aligned_cols=198 Identities=27% Similarity=0.376 Sum_probs=169.1
Q ss_pred cEEEeeeEEEcCC---CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc---------cc
Q 000647 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DL 511 (1374)
Q Consensus 444 ~i~~~~v~~~~~~---~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~---------~~ 511 (1374)
+|+++|+++.|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ..
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 3789999999972 36799999999999999999999999999999999999999999999998641 12
Q ss_pred cccEEEEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHH
Q 000647 512 NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1374)
Q Consensus 512 ~~~i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1374)
+++|+|+||+|.++. .|++||+.++............+++.++++.++|.+..++.| .+||||||||++||
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LSgGq~qRv~lA 152 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP--------AQLSGGQKQRVAIA 152 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh--------hhCCHHHHHHHHHH
Confidence 568999999998876 699999987632111111112346778999999998888766 68999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 591 Ral~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||+++|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~ 216 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDA 216 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999988764 3899999999999875 6999999975
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=334.83 Aligned_cols=200 Identities=28% Similarity=0.436 Sum_probs=173.6
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~ 517 (1374)
.++++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+.+|.+|+|.++|.+ ..+++.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 48899999999755679999999999999999999999999999999999999999999999854 124567999
Q ss_pred EecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHc
Q 000647 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 518 v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~ 594 (1374)
+||+|+++.+|++||+.++... ....++.++++.+++.++.+++|.+... ....+||||||||++|||||+
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~ 155 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPN------ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML 155 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCC------CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999999889999999886432 2345677788889999888887643322 235789999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
++|+++||||||++||+.+.+.+++.+++ .++|+|++||+++.+..+|++++|++
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~ 212 (229)
T cd03254 156 RDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDD 212 (229)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeC
Confidence 99999999999999999999999888765 47899999999999988999999975
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=357.36 Aligned_cols=198 Identities=22% Similarity=0.311 Sum_probs=171.2
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCc--cEEEeCCCCc----cccccEE
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS--GHIAKPGVGS----DLNKEIF 516 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~--G~I~~~g~~~----~~~~~i~ 516 (1374)
+.++++||++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+. ..++.|+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 4 GGIRIDHLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred eEEEEEEEEEEEC-CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 5699999999996 4679999999999999999999999999999999999999999 9999998641 1246799
Q ss_pred EEecCCCCCcC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000647 517 YVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1374)
Q Consensus 517 ~v~Q~p~l~~~-Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1374)
||+|++.+|.. |++|||.|+...........+.++.++++.++|+++.++.| .+||||||||++|||||++
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~--------~~LSgGq~QRvaLARAL~~ 154 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP--------AQLSGGMQQRIAIARAIAI 154 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh--------hhCCHHHHHHHHHHHHHhc
Confidence 99999988864 99999998754221111122356788999999999999987 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh---c--CCEEEEEccChhhH-hhccEEEEecC
Q 000647 596 KPKFAILDECTSAVTTDMEERFCAKVRA---M--GTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 596 ~p~illLDEptsaLD~~~~~~i~~~l~~---~--~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+|+++|||||||+||+...+.+.+.+++ . |+|+|+|||+++.+ ..+|+|++|++
T Consensus 155 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~ 214 (362)
T TIGR03258 155 EPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKD 214 (362)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999887653 2 78999999999886 57999999985
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=348.84 Aligned_cols=198 Identities=23% Similarity=0.288 Sum_probs=167.4
Q ss_pred cEEEeeeEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----------
Q 000647 444 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------- 509 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~----~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~---------- 509 (1374)
+|+++|+++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 37899999999743 2599999999999999999999999999999999999999999999998541
Q ss_pred cccccEEEEecCC--CCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCh-hHHhcCCCCccccCCCCCChhHHHH
Q 000647 510 DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p--~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~~~~~g~~LSgGqkQR 586 (1374)
.+++.++||+|+| .++..|+.||+.|+...........+.++.++++.++|. ++.++.| ..||||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--------~~LSgGqkqr 152 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSP--------FELSGGQMRR 152 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCc--------ccCCHHHHHH
Confidence 2456899999998 678889999998864321111111234577889999995 4666655 6899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 587 lalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
++|||||+.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+ ..||+|++|++
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~ 219 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEK 219 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999887753 489999999999987 57999999986
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=332.08 Aligned_cols=199 Identities=31% Similarity=0.444 Sum_probs=175.2
Q ss_pred cEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEE
Q 000647 444 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~ 516 (1374)
.++++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 47899999999753 579999999999999999999999999999999999999999999999854 13467899
Q ss_pred EEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHH
Q 000647 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 517 ~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal 593 (1374)
|+||+|.++.+|++||+.+... ...+++.++++.+++.+.++++|.+..+ .+...||||||||++||||+
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~-------~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGE-------YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred EECCCCccccchHHHHhCcCCC-------CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999975421 2356778889999999998877655433 35679999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 594 ~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+++|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+..+|+++++++
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~ 212 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDK 212 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEEC
Confidence 999999999999999999999999998875 37899999999999988999999975
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=339.72 Aligned_cols=193 Identities=22% Similarity=0.258 Sum_probs=149.9
Q ss_pred CCEEEeeeEEeC-CCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEE
Q 000647 1098 DSISFSKLDIIT-PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176 (1374)
Q Consensus 1098 g~I~f~~V~~~y-p~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~ 1176 (1374)
..+.|.+|+|.| |+.++.+++++++++.-+++.+||++|+||||++.++.+=..|..|.+-+.+. .+|++
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r---------~ri~~ 431 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR---------LRIKY 431 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeeccc---------ceecc
Confidence 358999999955 55558999999999999999999999999999999999988889998865543 57888
Q ss_pred ecCCCCCCCcchHHHhccCCChhHHH-HHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccC
Q 000647 1177 VPQRPYTCLGTLRDQIIYPLSREEAE-LRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1374)
Q Consensus 1177 VpQ~P~Lf~GTlR~Nl~yp~~~~e~~-~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~ 1255 (1374)
-.|.-+=+ +.-|.. +-+ ++++ .+...+++++..+..+||..-+... .-..
T Consensus 432 f~Qhhvd~---l~~~v~------~vd~~~~~-----------~pG~~~ee~r~hl~~~Gl~g~la~~---------si~~ 482 (582)
T KOG0062|consen 432 FAQHHVDF---LDKNVN------AVDFMEKS-----------FPGKTEEEIRRHLGSFGLSGELALQ---------SIAS 482 (582)
T ss_pred hhHhhhhH---HHHHhH------HHHHHHHh-----------CCCCCHHHHHHHHHhcCCCchhhhc---------cccc
Confidence 88876532 222211 111 1111 1223677788888776653222111 1256
Q ss_pred CChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH
Q 000647 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1335 (1374)
Q Consensus 1256 LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~ 1335 (1374)
||||||=|+++ |-+...+|.+|||||||+.||.|+-.+|-+.++
T Consensus 483 LSGGQKsrvaf------------------------------------A~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~ 526 (582)
T KOG0062|consen 483 LSGGQKSRVAF------------------------------------AACTWNNPHLLVLDEPTNHLDRDSLGALAKALK 526 (582)
T ss_pred cCCcchhHHHH------------------------------------HHHhcCCCcEEEecCCCccccHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999999998888
Q ss_pred hcCceEEEecCCCCchhhccceEEEEcCCC
Q 000647 1336 DMGITFVTSSQRPALIPFHSLELRLIDGEG 1365 (1374)
Q Consensus 1336 ~~~~TvI~IaHRl~~i~~~~~~l~l~~g~g 1365 (1374)
..+--||.|+|..+.++--.+++-. ..+|
T Consensus 527 ~F~GGVv~VSHd~~fi~~~c~E~Wv-ve~g 555 (582)
T KOG0062|consen 527 NFNGGVVLVSHDEEFISSLCKELWV-VEDG 555 (582)
T ss_pred hcCCcEEEEECcHHHHhhcCceeEE-EcCC
Confidence 7788999999999999988888877 3555
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=332.93 Aligned_cols=196 Identities=26% Similarity=0.328 Sum_probs=166.5
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC--ccccccEEEEecCC
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--SDLNKEIFYVPQRP 522 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~--~~~~~~i~~v~Q~p 522 (1374)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ...++.++|+||++
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 46899999985 4679999999999999999999999999999999999999999999999865 23456899999999
Q ss_pred CCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000647 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1374)
Q Consensus 523 ~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ill 601 (1374)
.++. .|++||+.++...........++++.++++.+++.+..++.+ .+||||||||++||||++.+|+++|
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~~ll 151 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV--------EELSKGNQQKVQFIAAVIHDPELLI 151 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcH--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8876 499999987432111101112356778899999988777655 5899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 602 LDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 602 LDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|+++++++
T Consensus 152 lDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 203 (210)
T cd03269 152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNK 203 (210)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeC
Confidence 9999999999999999888764 4789999999999874 6999999975
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=336.14 Aligned_cols=196 Identities=23% Similarity=0.241 Sum_probs=166.4
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----ccccccEEEEe
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~~~~~~i~~v~ 519 (1374)
|+++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..++++++|+|
T Consensus 1 i~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEEC-CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 46899999985 4679999999999999999999999999999999999999999999999854 12356799999
Q ss_pred cCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000647 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 520 Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
|++.++. .|++||+.++...........++++.++++.+++.+..++.+ .+||||||||++||||++.+|+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qr~~la~al~~~p~ 151 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV--------KTYSGGMRRRLEIARSLVHRPE 151 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9998776 499999987532111001112346788999999998877766 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 599 illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .+|+++++++
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~ 207 (220)
T cd03265 152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDH 207 (220)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999887754 3889999999999875 6999999975
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=331.23 Aligned_cols=192 Identities=22% Similarity=0.272 Sum_probs=167.5
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----cccccEEEEec
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 520 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----~~~~~i~~v~Q 520 (1374)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ..++.++|+||
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 46899999985 46899999999999999999999999999999999999999999999998651 23567999999
Q ss_pred CCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000647 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1374)
Q Consensus 521 ~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1374)
++.++. .|++||+.++.... ..+++++.++++.+++.+..++.+ ..||||||||++||||++++|++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 80 APGFYPNLTARENLRLLARLL----GIRKKRIDEVLDVVGLKDSAKKKV--------KGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred CCccCccCcHHHHHHHHHHhc----CCcHHHHHHHHHHcCCHHHHhhhH--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 998774 79999998753211 123567888999999998887765 68999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 600 AILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 600 llLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .+|+++.+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~ 201 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINK 201 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEEC
Confidence 999999999999999999887764 4899999999999885 6999999975
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=333.30 Aligned_cols=195 Identities=25% Similarity=0.316 Sum_probs=165.9
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-----cccccEEEEe
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DLNKEIFYVP 519 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~-----~~~~~i~~v~ 519 (1374)
|+++|+++.|+ ++++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++|+|
T Consensus 1 i~~~~~~~~~~-~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYG-KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEEC-CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 46899999985 457999999999999 9999999999999999999999999999999998641 2357899999
Q ss_pred cCCCCCcC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000647 520 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 520 Q~p~l~~~-Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
|+|.++.. |++||+.++............+++.++++.+++.+..++.+ .+||||||||++||||++++|+
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p~ 150 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI--------GSLSGGMRRRVGIAQALVGDPS 150 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99998875 99999986422111001112346778999999998877655 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 599 FAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 599 illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++||||||++||+.+.+.+.+.+++ .+.|+|+|||+++.+. .+|+++++++
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 204 (211)
T cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNK 204 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999998875 3689999999999885 6999999985
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=346.27 Aligned_cols=199 Identities=22% Similarity=0.314 Sum_probs=170.0
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc--------ccccc
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKE 514 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~--------~~~~~ 514 (1374)
..|+++|+++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 3699999999997567899999999999999999999999999999999999999999999998641 24568
Q ss_pred EEEEecCC--CCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000647 515 IFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1374)
Q Consensus 515 i~~v~Q~p--~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1374)
++|+||+| .++..|++||+.++............+++.++++.++|.++.++.+ .+||||||||++||||
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LS~G~~qrl~lara 155 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPT--------HCLSFGQKKRVAIAGV 155 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCc--------ccCCHHHHHHHHHHHH
Confidence 99999998 5677899999987532111111112345778899999998877765 6899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 593 l~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|+++|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~ 217 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKE 217 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999998887753 3899999999999986 7999999975
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=325.88 Aligned_cols=191 Identities=28% Similarity=0.448 Sum_probs=166.5
Q ss_pred EEEeeeEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCccccccEEEEec
Q 000647 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520 (1374)
Q Consensus 445 i~~~~v~~~~~~~----~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~~~~~~i~~v~Q 520 (1374)
++++||++.|++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+|+||
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------~i~~~~q 73 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------SIAYVSQ 73 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------EEEEEec
Confidence 4689999999754 3799999999999999999999999999999999999999999999987 6999999
Q ss_pred CCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCC
Q 000647 521 RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKP 597 (1374)
Q Consensus 521 ~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p 597 (1374)
+|.+++.|++||+.++... .+++..++++.+++.+.++..|.+.++ .....||+|||||++||||++.+|
T Consensus 74 ~~~l~~~t~~enl~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 74 EPWIQNGTIRENILFGKPF-------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred CchhccCcHHHHhccCCCc-------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999986431 234566788888998888877654322 345789999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHH-HH---hcCCEEEEEccChhhHhhccEEEEecC
Q 000647 598 KFAILDECTSAVTTDMEERFCAK-VR---AMGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 598 ~illLDEptsaLD~~~~~~i~~~-l~---~~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+++||||||++||++..+.+.+. ++ +.|.|+|++||+++.+..+|++++|++
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~ 202 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDN 202 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeC
Confidence 99999999999999999888774 43 247899999999999888999999975
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=357.48 Aligned_cols=197 Identities=21% Similarity=0.339 Sum_probs=169.2
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----cccccEEEEe
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVP 519 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----~~~~~i~~v~ 519 (1374)
.++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ..+++|+|||
T Consensus 3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 489999999996 46799999999999999999999999999999999999999999999998641 1246799999
Q ss_pred cCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000647 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 520 Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
|++.++. .|++||+.|+............+++.++++.++|.++.++.| .+||||||||++|||||+++|+
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~--------~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP--------KALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9998886 599999998753211111112356788999999998888877 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 599 illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+ ..+|++++|++
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~ 209 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA 209 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999998877653 389999999999876 57999999985
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=353.15 Aligned_cols=197 Identities=26% Similarity=0.402 Sum_probs=170.0
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----cccccEEEEe
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVP 519 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----~~~~~i~~v~ 519 (1374)
.|+++|+++.|+ ++.+++|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+. ..+++++|||
T Consensus 2 ~L~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFG-RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 378999999986 46799999999999999999999999999999999999999999999998641 2246799999
Q ss_pred cCCCCCc-CCHHHHhcCCCCCC----cccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 520 QRPYTAV-GTLRDQLIYPLTSD----QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 520 Q~p~l~~-~Tv~eni~~~~~~~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
|++.++. .|++||+.|+.... .......++++.++++.++|.++.++.| .+||||||||++|||||+
T Consensus 81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP--------AQLSGGQKQRVALARALA 152 (353)
T ss_pred cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh--------hhCCHHHHHHHHHHHHHh
Confidence 9998886 59999999975421 0001112456788999999999888877 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
++|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+ ..+|+|++|++
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~ 212 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQ 212 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999998887754 389999999999986 57999999985
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=330.39 Aligned_cols=200 Identities=31% Similarity=0.509 Sum_probs=173.0
Q ss_pred cEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEE
Q 000647 444 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~ 516 (1374)
.++++|+++.|+++ +++++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.+ ...++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 47899999999653 579999999999999999999999999999999999999999999999854 12346799
Q ss_pred EEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHH
Q 000647 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 517 ~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal 593 (1374)
|+||+|+++..|+.||+.++... ....++.++++.+++.+..++.|.+.++ ....+||||||||++||||+
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al 155 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPL------ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCC------CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence 99999998888999999875321 1345677889999999988887643332 23468999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHhc--CCEEEEEccChhhHhhccEEEEecC
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 594 ~~~p~illLDEptsaLD~~~~~~i~~~l~~~--~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+.+|+++||||||++||+.+.+.+++.+++. ++|+|++||+++.+..+|+++++++
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~ 213 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDS 213 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999988753 4799999999998889999999975
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=344.54 Aligned_cols=198 Identities=27% Similarity=0.373 Sum_probs=170.7
Q ss_pred cEEEeeeEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEE
Q 000647 444 YIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~-~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~ 516 (1374)
.++++||++.|++ .+++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ..+++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 6899999999974 4679999999999999999999999999999999999999999999999964 12456799
Q ss_pred EEecCC--CCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 517 YVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 517 ~v~Q~p--~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
|+||+| .++..|+.|||.++............+++.++++.++|+++.++.| ..||||||||++|||||+
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP--------HRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc--------ccCCHHHHHHHHHHHHHH
Confidence 999998 4566899999988632211111112345788999999999888877 589999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHhhccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
++|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+..+|+++++++
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~ 215 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNK 215 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEEC
Confidence 99999999999999999999999988764 27999999999999888999999975
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=347.72 Aligned_cols=197 Identities=23% Similarity=0.284 Sum_probs=166.1
Q ss_pred EEEeeeEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----------c
Q 000647 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------D 510 (1374)
Q Consensus 445 i~~~~v~~~~~~~----~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----------~ 510 (1374)
++++|+++.|++. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. .
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999742 4699999999999999999999999999999999999999999999998631 2
Q ss_pred ccccEEEEecCC--CCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCh-hHHhcCCCCccccCCCCCChhHHHHH
Q 000647 511 LNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 587 (1374)
Q Consensus 511 ~~~~i~~v~Q~p--~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~~~~~g~~LSgGqkQRl 587 (1374)
.++.++||||+| .++..|++||+.|+............+++.++++.++|. ++.++.| .+||||||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~LSgGq~qrv 154 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSP--------FELSGGQMRRV 154 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCc--------ccCCHHHHHHH
Confidence 346799999998 577789999998863211100111124567889999996 5566655 68999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 588 alARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+|||||+.+|+++||||||++||+.+...+.+.+++ .|.|||+|||+++.+ ..+|++++|++
T Consensus 155 ~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~ 221 (290)
T PRK13634 155 AIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHK 221 (290)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999887753 389999999999987 57999999975
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=343.83 Aligned_cols=197 Identities=25% Similarity=0.330 Sum_probs=168.7
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-------cccccEEE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIFY 517 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~-------~~~~~i~~ 517 (1374)
++++|+++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 78999999997556799999999999999999999999999999999999999999999998641 23467999
Q ss_pred EecCCC--CCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000647 518 VPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1374)
Q Consensus 518 v~Q~p~--l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1374)
+||+|. ++..|+.||+.++...........++++.++++.+++.+..++.+ ..||||||||++|||||++
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP--------KTLSGGQGQCVALAGILTM 153 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc--------ccCCHHHHHHHHHHHHHHc
Confidence 999985 456799999987532111001112345778899999998888765 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHhhccEEEEecC
Q 000647 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 596 ~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+|+++||||||++||+.+...+++.+++ .|.|+|++||+++.+..+|+++++++
T Consensus 154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~ 210 (274)
T PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDR 210 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEEC
Confidence 9999999999999999999999887753 48999999999999989999999975
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=355.65 Aligned_cols=199 Identities=23% Similarity=0.386 Sum_probs=171.1
Q ss_pred CCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC----ccccccEEE
Q 000647 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFY 517 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~----~~~~~~i~~ 517 (1374)
...++++|+++.|+ +..+++|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ...++.++|
T Consensus 17 ~~~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 17 TPLLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CceEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 34699999999985 4679999999999999999999999999999999999999999999999864 123568999
Q ss_pred EecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccC
Q 000647 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1374)
Q Consensus 518 v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~ 596 (1374)
|||++.+|. .|+.||+.|+............+++.++++.++|.++.++.| .+||||||||++|||||+.+
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~--------~~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP--------HQLSGGQRQRVALARSLAKR 167 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHHHhcC
Confidence 999999887 499999999754221111122356788999999999998887 68999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHH----hcCCEEEEEccChhhH-hhccEEEEecC
Q 000647 597 PKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 597 p~illLDEptsaLD~~~~~~i~~~l~----~~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|+++|||||||+||....+.+.+.++ +.|.|+|+|||+++.+ ..+|++++|++
T Consensus 168 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~ 225 (377)
T PRK11607 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNR 225 (377)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999988876543 4589999999999975 67999999975
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=331.61 Aligned_cols=196 Identities=27% Similarity=0.358 Sum_probs=166.8
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc--------cccccEE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEIF 516 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~--------~~~~~i~ 516 (1374)
++++|+++.|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 468999999864 6799999999999999999999999999999999999999999999998531 2356799
Q ss_pred EEecCCCCCc-CCHHHHhcCCCCC-CcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 517 YVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 517 ~v~Q~p~l~~-~Tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
|+||+|.++. .|++||+.++... .........+++.++++.+++.+..++.+ .+||||||||++||||++
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP--------AQLSGGQQQRVAIARALA 151 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc--------cccCHHHHHHHHHHHHHh
Confidence 9999998876 6999999875321 11001112345778899999988888766 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|+++++++
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~ 210 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDD 210 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999888764 4789999999999885 6999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=343.38 Aligned_cols=199 Identities=26% Similarity=0.383 Sum_probs=170.0
Q ss_pred CcEEEeeeEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccE
Q 000647 443 NYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~-~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i 515 (1374)
..++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 47999999999974 5679999999999999999999999999999999999999999999999864 1346789
Q ss_pred EEEecCC--CCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000647 516 FYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 516 ~~v~Q~p--~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1374)
+|+||+| .++..|++||+.++............+++.++++.+++.++.++.+ .+||||||||++|||||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral 157 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP--------QNLSGGQKQRVAIASVL 157 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 9999998 4556799999987532111101112235678899999998888876 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh---c-CCEEEEEccChhhHhhccEEEEecC
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 594 ~~~p~illLDEptsaLD~~~~~~i~~~l~~---~-~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+.+|+++||||||++||+.+.+.+++.+++ . ++|+|++||+++.+..+|++++|++
T Consensus 158 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~ 217 (271)
T PRK13632 158 ALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSE 217 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEEC
Confidence 999999999999999999999999988864 2 4899999999998888999999975
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=328.71 Aligned_cols=202 Identities=22% Similarity=0.314 Sum_probs=166.2
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEec
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~Vp 1178 (1374)
.|+++|++++|.+. +||+|+||+|++|+.++|+||||||||||++++.|+..|.+|+|.+.|.++++... +.+|+|||
T Consensus 4 ~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~-~~~IgYVP 81 (254)
T COG1121 4 MIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK-RLRIGYVP 81 (254)
T ss_pred EEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc-CCeEEEcC
Confidence 58999999999866 69999999999999999999999999999999999999999999999998877632 35699999
Q ss_pred CCCC---CCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccC
Q 000647 1179 QRPY---TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1374)
Q Consensus 1179 Q~P~---Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~ 1255 (1374)
|... -|+-|++|-+..+.... ............+++.++|+.||++++.++. -..
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~------------~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~----------i~~ 139 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGK------------KGWFRRLNKKDKEKVDEALERVGMEDLRDRQ----------IGE 139 (254)
T ss_pred cccccCCCCCcCHHHHHHccCccc------------ccccccccHHHHHHHHHHHHHcCchhhhCCc----------ccc
Confidence 9663 47778888876542110 0000001112246688999999998776553 356
Q ss_pred CChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH
Q 000647 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1335 (1374)
Q Consensus 1256 LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~ 1335 (1374)
|||||+||+.| ||||..+|++|||||||+++|+.++..++++++
T Consensus 140 LSGGQ~QRV~l------------------------------------ARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~ 183 (254)
T COG1121 140 LSGGQKQRVLL------------------------------------ARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLK 183 (254)
T ss_pred cCcHHHHHHHH------------------------------------HHHhccCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999999888765
Q ss_pred h---cCceEEEecCCC-CchhhccceEEE
Q 000647 1336 D---MGITFVTSSQRP-ALIPFHSLELRL 1360 (1374)
Q Consensus 1336 ~---~~~TvI~IaHRl-~~i~~~~~~l~l 1360 (1374)
+ .|+||++|+|++ ...++.|+++.|
T Consensus 184 ~l~~eg~tIl~vtHDL~~v~~~~D~vi~L 212 (254)
T COG1121 184 ELRQEGKTVLMVTHDLGLVMAYFDRVICL 212 (254)
T ss_pred HHHHCCCEEEEEeCCcHHhHhhCCEEEEE
Confidence 3 599999999999 556778888888
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=336.47 Aligned_cols=197 Identities=29% Similarity=0.394 Sum_probs=167.5
Q ss_pred EEEeeeEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc---------ccc
Q 000647 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLN 512 (1374)
Q Consensus 445 i~~~~v~~~~~~~---~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~---------~~~ 512 (1374)
|+++|+++.|++. .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 2899999999999999999999999999999999999999999999998641 125
Q ss_pred ccEEEEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHH
Q 000647 513 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1374)
Q Consensus 513 ~~i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalAR 591 (1374)
+.++|+||+|.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~ 153 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP--------AQLSGGQKQRVGIAR 153 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh--------hhCCHHHHHHHHHHH
Confidence 67999999999886 699999987532111101112346778999999998887765 689999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 592 al~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|++++|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~ 216 (233)
T cd03258 154 ALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEK 216 (233)
T ss_pred HHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999887754 3899999999999875 6999999975
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=348.39 Aligned_cols=198 Identities=24% Similarity=0.294 Sum_probs=168.7
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----ccccccEEE
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFY 517 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~~~~~~i~~ 517 (1374)
..++++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++|+|
T Consensus 6 ~~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 6 APIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred ceEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 4799999999996 4679999999999999999999999999999999999999999999999865 134578999
Q ss_pred EecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccC
Q 000647 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1374)
Q Consensus 518 v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~ 596 (1374)
+||+|.++. .|++||+.|..............++.++++.+++.+..++.+ ..||||||||++|||||+++
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKV--------GELSGGMKRRLTLARALVND 156 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCch--------hhCCHHHHHHHHHHHHHhCC
Confidence 999998875 699999986322111100111245678899999988777654 58999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 597 p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|+++||||||+|||+.+.+.+.+.+++ .|+|+|++||+++.+. .||+|++|++
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~ 213 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEE 213 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999888764 4899999999999885 6999999986
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=346.34 Aligned_cols=197 Identities=20% Similarity=0.305 Sum_probs=166.8
Q ss_pred EEEeeeEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----------c
Q 000647 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------D 510 (1374)
Q Consensus 445 i~~~~v~~~~~~~----~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----------~ 510 (1374)
++++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999642 4699999999999999999999999999999999999999999999998541 2
Q ss_pred ccccEEEEecCC--CCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCh-hHHhcCCCCccccCCCCCChhHHHHH
Q 000647 511 LNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 587 (1374)
Q Consensus 511 ~~~~i~~v~Q~p--~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~~~~~g~~LSgGqkQRl 587 (1374)
++++|+||||+| .++..|+.|||.++...........++++.++++.++|. +..++.+ .+||||||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~LSgGq~qrv 154 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--------FQMSGGQMRKI 154 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCc--------ccCCHHHHHHH
Confidence 456899999998 577789999999863221111111234567889999996 5666655 68999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 588 alARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+|||||+.+|+++||||||++||+.+...+.+.+++ .|+|+|+|||+++.+ ..+|++++|++
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~ 221 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKE 221 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999887763 489999999999987 57999999975
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=336.46 Aligned_cols=196 Identities=26% Similarity=0.362 Sum_probs=165.8
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-----cccccEEEEe
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DLNKEIFYVP 519 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~-----~~~~~i~~v~ 519 (1374)
++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ...+.++|+|
T Consensus 2 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 2 LEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 68999999986 46799999999999999999999999999999999999999999999998541 1235799999
Q ss_pred cCCCC-CcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000647 520 QRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 520 Q~p~l-~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
|++.+ +..|++||+.++............+++.++++.+++.+..++.+ .+||||||||++||||++++|+
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrl~laral~~~p~ 152 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKV--------RELNGGHRRRVEIARALLHRPA 152 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99987 45799999987532111001112345678899999987776654 5899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHhhccEEEEecC
Q 000647 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 599 illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+..+|++++|++
T Consensus 153 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~ 207 (236)
T TIGR03864 153 LLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHR 207 (236)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeC
Confidence 9999999999999999999887753 37999999999999888999999975
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=337.40 Aligned_cols=196 Identities=28% Similarity=0.407 Sum_probs=165.4
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc------c-ccccEEE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIFY 517 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~------~-~~~~i~~ 517 (1374)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .+..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 46889999986 46799999999999999999999999999999999999999999999998641 1 2356999
Q ss_pred EecCCCCCcC-CHHHHhcCCCCCCccc----------CCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHH
Q 000647 518 VPQRPYTAVG-TLRDQLIYPLTSDQEV----------EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1374)
Q Consensus 518 v~Q~p~l~~~-Tv~eni~~~~~~~~~~----------~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQR 586 (1374)
+||+|.++.+ |++||+.++....... .....+++.++++.+++.+..++.+ .+||||||||
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qr 151 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA--------GELSYGQQRR 151 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh--------hhCCHHHHHH
Confidence 9999988875 9999998754221100 0112345678899999987777655 6899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 587 lalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++||||++.+|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .+|+++++++
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999888764 5899999999999885 6999999975
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=332.24 Aligned_cols=199 Identities=24% Similarity=0.377 Sum_probs=169.3
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc------cccccEE
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIF 516 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~------~~~~~i~ 516 (1374)
..|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. .+++.++
T Consensus 6 ~~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 6 PLLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred ceEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4699999999985 46799999999999999999999999999999999999999999999998531 2356899
Q ss_pred EEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCh-hHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000647 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1374)
Q Consensus 517 ~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1374)
|+||+|+++..|++||+.++..... ....+.++.++++.+++. ...++.+ .+||||||||++||||+++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRN--QQPDPAIFLDDLERFALPDTILTKNI--------AELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcC--CChHHHHHHHHHHHcCCChHHhcCCc--------ccCCHHHHHHHHHHHHHhc
Confidence 9999999988899999987432111 111234577899999995 4555544 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHhhccEEEEecCCCc
Q 000647 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGEGE 652 (1374)
Q Consensus 596 ~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~~~d~il~l~~~g~ 652 (1374)
+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+..+|++++++++++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~ 215 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAG 215 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccc
Confidence 9999999999999999999998887754 38899999999999989999999975443
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=333.32 Aligned_cols=199 Identities=30% Similarity=0.463 Sum_probs=172.2
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v 518 (1374)
++++|+++.|++++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 4689999999766779999999999999999999999999999999999999999999999854 1235679999
Q ss_pred ecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHcc
Q 000647 519 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYH 595 (1374)
Q Consensus 519 ~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~ 595 (1374)
||+|+++..|++||+.++... ..+.++.+.++.+++.+..+.+|.+..+ .+...||||||||++|||||++
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~------~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~ 154 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPD------ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK 154 (236)
T ss_pred CCCChhhcchHHHHHhhcCCC------CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999886432 2344566778888998888877644322 3467899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 596 KPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 596 ~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+..||+++++++
T Consensus 155 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~ 210 (236)
T cd03253 155 NPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKD 210 (236)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEEC
Confidence 9999999999999999999999888764 27899999999999988999999975
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=328.82 Aligned_cols=194 Identities=23% Similarity=0.328 Sum_probs=164.5
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC----ccccccEEEEec
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~----~~~~~~i~~v~Q 520 (1374)
|+++|+++.|++ +. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 i~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSYGE-QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEeCC-Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 468999999863 33 39999999999999999999999999999999999999999999854 112457999999
Q ss_pred CCCCCcC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000647 521 RPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1374)
Q Consensus 521 ~p~l~~~-Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1374)
+|.++.+ |++||+.++...........++++.++++.+++.+..++.| .+||||||||++||||++.+|++
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP--------GELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc--------ccCCHHHHHHHHHHHHHhcCCCE
Confidence 9998875 99999987643111111123456788999999998888776 58999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 600 llLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+||||||++||+++.+.+.+.+++ .++|+|++||+++.+. .+|+++++++
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 204 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDN 204 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEEC
Confidence 999999999999999999887763 3899999999999885 6999999985
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=333.97 Aligned_cols=198 Identities=24% Similarity=0.293 Sum_probs=166.1
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCC-----cCCccEEEeCCCC-c-------cc
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW-----PLVSGHIAKPGVG-S-------DL 511 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~-----~~~~G~I~~~g~~-~-------~~ 511 (1374)
|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.+ . .+
T Consensus 1 i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYG-DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 46899999985 467999999999999999999999999999999999999 9999999999864 1 13
Q ss_pred cccEEEEecCCCCCcCCHHHHhcCCCCCCcccC-CCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHH
Q 000647 512 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1374)
Q Consensus 512 ~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1374)
+++++|+||++.++..|++||+.++........ ...++++.++++.+++.+..++.+. ..+||||||||++||
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~~LSgG~~qrv~la 153 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH------ALGLSGGQQQRLCLA 153 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC------cccCCHHHHHHHHHH
Confidence 467999999998887899999987643211100 0123567788999999877665420 258999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhc--CCEEEEEccChhhHh-hccEEEEecC
Q 000647 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 591 Ral~~~p~illLDEptsaLD~~~~~~i~~~l~~~--~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||++++|+++||||||++||+.+.+.+.+.+++. .+|+|++||+++.+. .+|+++++++
T Consensus 154 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 215 (227)
T cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLN 215 (227)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999888652 379999999999865 7999999975
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=353.66 Aligned_cols=186 Identities=28% Similarity=0.330 Sum_probs=161.0
Q ss_pred CCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccc----cccEEEEecCCCCC
Q 000647 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDL----NKEIFYVPQRPYTA 525 (1374)
Q Consensus 456 ~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~----~~~i~~v~Q~p~l~ 525 (1374)
+++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++ +++++||||++.+|
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 45679999999999999999999999999999999999999999999999964 122 56899999999998
Q ss_pred c-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000647 526 V-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1374)
Q Consensus 526 ~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDE 604 (1374)
+ .|++|||.++............+++.++++.++|+++.++.| .+||||||||++|||||+++|+++||||
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p--------~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP--------DELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 7 599999998643211111123456788999999999999887 6899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 605 CTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 605 ptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
||||||+.+.+.+++.+.+ .|+|+|+|||+++.+ +.+|+|++|++
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~ 205 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKA 205 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999887653 389999999999875 67999999975
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=353.48 Aligned_cols=197 Identities=23% Similarity=0.324 Sum_probs=170.8
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~ 517 (1374)
.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .+++++|+|
T Consensus 3 ~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 589999999996 5789999999999999999999999999999999999999999999999854 234678999
Q ss_pred EecCCCC-CcCCHHHHhcCCCCCCc-cc---CCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000647 518 VPQRPYT-AVGTLRDQLIYPLTSDQ-EV---EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1374)
Q Consensus 518 v~Q~p~l-~~~Tv~eni~~~~~~~~-~~---~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1374)
|||++.+ +..|++||+.++..... .. ...+.+++.++++.+++.++.++.+ .+||||||||++||||
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~--------~~LSgGerQRv~IArA 153 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV--------TSLSGGERQRVLLARA 153 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHH
Confidence 9999987 56799999988642110 00 1123456789999999999888765 6899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 593 l~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|+++|+++||||||++||+.+...+++.+++ .|+|+|++||+++.+ +.||++++|++
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~ 214 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLAD 214 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999998887764 488999999999998 57999999986
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=333.37 Aligned_cols=193 Identities=30% Similarity=0.370 Sum_probs=167.6
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~ 517 (1374)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 488999999985 4679999999999999999999999999999999999999999999999854 134568999
Q ss_pred EecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCh-hHHhcCCCCccccCCCCCChhHHHHHHHHHHHccC
Q 000647 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1374)
Q Consensus 518 v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~ 596 (1374)
+||+|.++..|++||+.++..... ....++.++++.+++. ++.++.+ .+||||||||++||||++++
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDV--------KNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCc--------ccCCHHHHHHHHHHHHHhcC
Confidence 999999988999999987543211 1245677889999996 5666654 68999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 597 PKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 597 p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|+++++++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~ 207 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNK 207 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeC
Confidence 999999999999999999999887754 3899999999999875 6999999985
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=334.79 Aligned_cols=196 Identities=22% Similarity=0.287 Sum_probs=164.9
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc------c-ccccEEE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIFY 517 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~------~-~~~~i~~ 517 (1374)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 46899999986 46799999999999999999999999999999999999999999999998641 1 2356999
Q ss_pred EecCCCCCcC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccC
Q 000647 518 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1374)
Q Consensus 518 v~Q~p~l~~~-Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~ 596 (1374)
+||++.++.+ |++||+.++.............++.++++.+++.+..++.+ ..||||||||++||||++++
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKA--------SSLSGGERRRVEIARALATN 151 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHHHHhcC
Confidence 9999988875 99999987532111101112345678899999988777655 68999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 597 p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|+++||||||++||+.+.+.+++.+++ .++|+|++||+++.+ ..+|+++++++
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 208 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYE 208 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999887754 488999999999765 57999999975
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=341.88 Aligned_cols=198 Identities=25% Similarity=0.332 Sum_probs=168.8
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~ 517 (1374)
.++++|+++.|++++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 48899999999755679999999999999999999999999999999999999999999999864 124467999
Q ss_pred EecCCC--CCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000647 518 VPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1374)
Q Consensus 518 v~Q~p~--l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1374)
+||+|. ++..|+.||+.++...........++++.++++.+++.+..++.+ ..||||||||++|||||++
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP--------HHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc--------ccCCHHHHHHHHHHHHHHc
Confidence 999983 667899999987532111111112345778999999998888876 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 596 ~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ +.+|+++++++
T Consensus 155 ~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~ 213 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDK 213 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999887753 389999999999988 58999999975
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=336.50 Aligned_cols=197 Identities=27% Similarity=0.381 Sum_probs=165.6
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v 518 (1374)
++++||++.|++.+++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 4689999998643679999999999999999999999999999999999999999999999864 1235679999
Q ss_pred ecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChh--HHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000647 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY--LLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1374)
Q Consensus 519 ~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1374)
||+|.++. .|++||+.++............+++.++++.+++.+ +.++.+ .+||||||||++||||+++
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--------~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYP--------HELSGGQQQRVGVARALAA 152 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcCh--------hhCCHHHHHHHHHHHHHhc
Confidence 99998886 699999987532111101112346778899999985 666654 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 596 ~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..+|++++|++
T Consensus 153 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~ 211 (242)
T cd03295 153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKN 211 (242)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999887764 389999999999976 57999999985
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=331.84 Aligned_cols=197 Identities=31% Similarity=0.425 Sum_probs=161.8
Q ss_pred EEEeeeEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc---------ccc
Q 000647 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLN 512 (1374)
Q Consensus 445 i~~~~v~~~~~~~---~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~---------~~~ 512 (1374)
++++||++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 6899999999654 2799999999999999999999999999999999999999999999998541 235
Q ss_pred ccEEEEecCC--CCC-cCCHHHHhcCCCCCCcccC-CCCHHH-HHHHHHHcCCh-hHHhcCCCCccccCCCCCChhHHHH
Q 000647 513 KEIFYVPQRP--YTA-VGTLRDQLIYPLTSDQEVE-PLTHGG-MVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1374)
Q Consensus 513 ~~i~~v~Q~p--~l~-~~Tv~eni~~~~~~~~~~~-~~~~~~-~~~~l~~~~L~-~~~~~~~~~~~~~~g~~LSgGqkQR 586 (1374)
+.++|+||+| .++ ..|++||+.++........ .....+ ..++++.+++. +..++.+ .+||||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~qr 153 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYP--------HELSGGQRQR 153 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCc--------hhcCHHHHHH
Confidence 6899999999 344 4799999976422110000 001112 24678888984 5666655 5899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---c-CCEEEEEccChhhHh-hccEEEEecC
Q 000647 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 587 lalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~-~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++||||++++|+++||||||++||+.+.+.+++.+++ . |+|+|++||+++.+. .+|++++|++
T Consensus 154 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 221 (228)
T cd03257 154 VAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYA 221 (228)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeC
Confidence 9999999999999999999999999999999888754 2 899999999999886 7999999985
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=343.50 Aligned_cols=198 Identities=28% Similarity=0.374 Sum_probs=169.4
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----ccccccEEEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~~~~~~i~~v 518 (1374)
.++++|+++.|.+++.+|+|+||+|++|++++++||||||||||+|+|+|+.+|++|+|.++|.+ .+.++++||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 47889999999646889999999999999999999999999999999999999999999999965 2456789999
Q ss_pred ecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000647 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1374)
Q Consensus 519 ~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1374)
||+|.++. .|++||+.|-...........++++.++++.++|.+..++.. ..||+|||||++||+||+++|
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~lS~G~kqrl~ia~aL~~~P 155 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKV--------RTLSGGMKQRLSIALALLHDP 155 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcch--------hhcCHHHHHHHHHHHHHhcCC
Confidence 99998765 599999987433221111123567899999999998443322 589999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHh---cC-CEEEEEccChhhHhh-ccEEEEecC
Q 000647 598 KFAILDECTSAVTTDMEERFCAKVRA---MG-TSCITISHRPALVAF-HDVVLSLDG 649 (1374)
Q Consensus 598 ~illLDEptsaLD~~~~~~i~~~l~~---~~-~TiI~vtH~~~~~~~-~d~il~l~~ 649 (1374)
+++||||||+|||+.+...+.+.+++ .| +||+++||.++.+.. ||+|+++++
T Consensus 156 ~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~ 212 (293)
T COG1131 156 ELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILND 212 (293)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeC
Confidence 99999999999999999999988764 35 899999999998865 999999986
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=346.28 Aligned_cols=197 Identities=25% Similarity=0.282 Sum_probs=166.6
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----ccccccEEEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~~~~~~i~~v 518 (1374)
.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+
T Consensus 4 ~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 4 AIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred EEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 589999999985 4679999999999999999999999999999999999999999999999864 1245789999
Q ss_pred ecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000647 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1374)
Q Consensus 519 ~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1374)
||++.++. .|++||+.+.............+++.++++.+++.+..++.+ ..||||||||++|||||+++|
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~p 154 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRV--------ALLSGGMKRRLTLARALINDP 154 (303)
T ss_pred eccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCch--------hhCCHHHHHHHHHHHHHhcCC
Confidence 99998875 699999975321111000111235667899999988777755 589999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 598 ~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 155 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~ 210 (303)
T TIGR01288 155 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLES 210 (303)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999888764 4899999999999885 7999999975
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=328.93 Aligned_cols=192 Identities=25% Similarity=0.330 Sum_probs=163.0
Q ss_pred EeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----------cccccEE
Q 000647 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKEIF 516 (1374)
Q Consensus 447 ~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----------~~~~~i~ 516 (1374)
++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+- ..++.++
T Consensus 1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 368889886 46799999999999999999999999999999999999999999999998641 1346799
Q ss_pred EEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000647 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1374)
Q Consensus 517 ~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1374)
|++|+|.++. .|++||+.++............+++.++++.+++++..++.+ .+||||||||++|||||++
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI--------YELSGGEQQRVALARAILK 151 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCCh--------hhCCHHHHHHHHHHHHHHc
Confidence 9999998886 699999987432111111112456788999999988777755 5899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHhhccEEEEe
Q 000647 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSL 647 (1374)
Q Consensus 596 ~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~~~d~il~l 647 (1374)
+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++....+|++++|
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999988765 489999999999988889999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=340.75 Aligned_cols=199 Identities=22% Similarity=0.303 Sum_probs=170.4
Q ss_pred CcEEEeeeEEEcCC-----CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-------c
Q 000647 443 NYIEFSGVKVVTPT-----GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------D 510 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~-----~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~-------~ 510 (1374)
+.++++|+++.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 36899999999974 25799999999999999999999999999999999999999999999998541 2
Q ss_pred ccccEEEEecCCC--CCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHH
Q 000647 511 LNKEIFYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1374)
Q Consensus 511 ~~~~i~~v~Q~p~--l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1374)
+++.++|+||+|. ++..|+.+|+.|+...........++++.++++.++|.++.++.+ .+||||||||++
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LS~G~~qrv~ 154 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP--------HLLSGGQKQRVA 154 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc--------ccCCHHHHHHHH
Confidence 3568999999984 555689999988632211111112456788999999999888876 689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHhhccEEEEecC
Q 000647 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 589 lARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
|||||+++|+++||||||++||+.+...+.+.+++ .|.|+|++||+++.+..+|+++++++
T Consensus 155 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~ 219 (280)
T PRK13633 155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDS 219 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEEC
Confidence 99999999999999999999999999999887754 38999999999999888999999975
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=329.64 Aligned_cols=199 Identities=26% Similarity=0.420 Sum_probs=170.6
Q ss_pred EEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEE
Q 000647 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1374)
Q Consensus 445 i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~ 517 (1374)
++++|+++.|++. +++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ..+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999998653 379999999999999999999999999999999999999999999999854 123567999
Q ss_pred EecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHc
Q 000647 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 518 v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~ 594 (1374)
+||+|+++..|++||+.++... ....++.+.++.+++.++++.+|.+... .....||||||||++|||||+
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 154 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPG------ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL 154 (234)
T ss_pred eCCCCeeccccHHHHhhccCCC------CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHh
Confidence 9999999989999999886432 1334566677788888888776533221 245789999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
++|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+..+|+++++++
T Consensus 155 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~ 211 (234)
T cd03251 155 KDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLED 211 (234)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecC
Confidence 99999999999999999999999998865 48899999999999988999999986
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=330.83 Aligned_cols=208 Identities=26% Similarity=0.313 Sum_probs=181.1
Q ss_pred CCEEEeeeEEeCCC-cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccE
Q 000647 1098 DSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGI 1174 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~-~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i 1174 (1374)
|.|+++|+++.|+. .+.+++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ...++++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 56899999999986 46899999999999999999999999999999999999999999999999988764 2456789
Q ss_pred EEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccc-cc
Q 000647 1175 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WE 1253 (1374)
Q Consensus 1175 ~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~-~g 1253 (1374)
+|+||+|.+|++|++||+.+... ...+++.++++.+++.+.+.++|.|+++..+ +.
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~-----------------------~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~ 137 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGE-----------------------YSDEELWQALERVGLKEFVESLPGGLDTVVEEGG 137 (221)
T ss_pred EEECCCCccccchHHHHhCcCCC-----------------------CCHHHHHHHHHHhCcHHHHHhcccccccccccCC
Confidence 99999999999999999964211 1133456677888888888888899998864 67
Q ss_pred cCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHH
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL 1333 (1374)
Q Consensus 1254 ~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~ 1333 (1374)
..||+|||||++| ||||+++|+++||||||++||+++.+.+.+.
T Consensus 138 ~~LS~G~~qr~~l------------------------------------aral~~~p~llllDEP~~~LD~~~~~~l~~~ 181 (221)
T cd03244 138 ENLSVGQRQLLCL------------------------------------ARALLRKSKILVLDEATASVDPETDALIQKT 181 (221)
T ss_pred CcCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 8999999999999 9999999999999999999999999888877
Q ss_pred HHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 000647 1334 AKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1334 ~~~--~~~TvI~IaHRl~~i~~~~~~l~l~~g~ 1364 (1374)
+++ .+.|+|+++|+++.+...++++.+.+|+
T Consensus 182 l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~ 214 (221)
T cd03244 182 IREAFKDCTVLTIAHRLDTIIDSDRILVLDKGR 214 (221)
T ss_pred HHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCe
Confidence 654 4789999999998888889999996553
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=341.64 Aligned_cols=201 Identities=22% Similarity=0.306 Sum_probs=173.3
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEec
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~Vp 1178 (1374)
.|+++||+..|.+.. +++|+||+|+.||.+.++|||||||||++++++||.+|++|+|.|||.|++++.-..+.|++|+
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 589999999997655 9999999999999999999999999999999999999999999999999999865556899999
Q ss_pred CCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCC
Q 000647 1179 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1374)
Q Consensus 1179 Q~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LS 1257 (1374)
|++-||+- |++|||.||+... +. .-+.-+.++.++.+.++|.+++++.| .+||
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~----------~~------~k~ei~~rV~eva~~L~l~~lL~r~P----------~~LS 135 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLR----------GV------PKAEIDKRVKEVAKLLGLEHLLNRKP----------LQLS 135 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhC----------CC------chHHHHHHHHHHHHHcCChhHHhcCc----------ccCC
Confidence 99999876 9999999997521 00 00012456788889999999998875 5689
Q ss_pred hhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHH---
Q 000647 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA--- 1334 (1374)
Q Consensus 1258 gGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~--- 1334 (1374)
||||||+|| ||||+|+|+++|||||.|+||......+...+
T Consensus 136 GGQrQRVAl------------------------------------aRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~l 179 (338)
T COG3839 136 GGQRQRVAL------------------------------------ARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKL 179 (338)
T ss_pred hhhHHHHHH------------------------------------HHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999999876654433
Q ss_pred -HhcCceEEEecCCC-CchhhccceEEEEc
Q 000647 1335 -KDMGITFVTSSQRP-ALIPFHSLELRLID 1362 (1374)
Q Consensus 1335 -~~~~~TvI~IaHRl-~~i~~~~~~l~l~~ 1362 (1374)
++.+.|+|.|||+. +.+-..|++..+.+
T Consensus 180 h~~l~~T~IYVTHDq~EAmtladri~Vm~~ 209 (338)
T COG3839 180 HERLGTTTIYVTHDQVEAMTLADRIVVMND 209 (338)
T ss_pred HHhcCCcEEEEcCCHHHHHhhCCEEEEEeC
Confidence 34699999999997 88889999999953
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=341.92 Aligned_cols=198 Identities=26% Similarity=0.352 Sum_probs=166.0
Q ss_pred cEEEeeeEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----------
Q 000647 444 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------- 509 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~----~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~---------- 509 (1374)
.++++|+++.|+++ +++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 37899999999642 4699999999999999999999999999999999999999999999998641
Q ss_pred cccccEEEEecCC--CCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCh-hHHhcCCCCccccCCCCCChhHHHH
Q 000647 510 DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p--~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~~~~~g~~LSgGqkQR 586 (1374)
..++.++|+||+| .++..|++||+.++............+++.++++.++|. ++.++.+ .+||||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~LSgGq~qr 153 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSP--------FELSGGQMRR 153 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCc--------ccCCHHHHHH
Confidence 1345799999998 466789999998753211110111234567889999997 5667655 6899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 587 lalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+ ..||++++|++
T Consensus 154 l~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~ 220 (287)
T PRK13641 154 VAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEH 220 (287)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999998887764 489999999999987 57999999975
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=329.17 Aligned_cols=194 Identities=22% Similarity=0.342 Sum_probs=162.8
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc------c-ccccEEE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIFY 517 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~------~-~~~~i~~ 517 (1374)
|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. + .++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYG-KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecC-CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 46899999986 46799999999999999999999999999999999999999999999998541 1 2457999
Q ss_pred EecCCCCCcC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHc-CChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000647 518 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNV-DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1374)
Q Consensus 518 v~Q~p~l~~~-Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1374)
+||++.++.. |++||+.++..... .....+++.++++.+ ++.+..++.+ .+||||||||++||||+++
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLA--------GTLSGGEQQMLAIARALMS 149 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCch--------hhCCHHHHHHHHHHHHHhc
Confidence 9999988875 99999987643211 111234456677777 4666666544 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 596 ~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+|+++||||||++||+.+.+.+++.+++ .++|+|++||+++.+ ..+|+++++++
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLER 207 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeC
Confidence 9999999999999999999999988764 478999999999986 56999999975
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=321.53 Aligned_cols=201 Identities=21% Similarity=0.248 Sum_probs=167.2
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEec
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~Vp 1178 (1374)
.+++++|+..|++ ..||+|+||+|++||.|+|+||||||||||++++.||..|++|+|.++|..+... ...++||+
T Consensus 3 ~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p---~~~~~~vF 78 (248)
T COG1116 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP---GPDIGYVF 78 (248)
T ss_pred eEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC---CCCEEEEe
Confidence 4789999999976 7899999999999999999999999999999999999999999999999977433 34689999
Q ss_pred CCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCC
Q 000647 1179 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1374)
Q Consensus 1179 Q~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LS 1257 (1374)
|++.||+= |+++|+.+|+..... ......+...+.|+.|||..+-++ |..+||
T Consensus 79 Q~~~LlPW~Tv~~NV~l~l~~~~~----------------~~~e~~~~a~~~L~~VgL~~~~~~----------~P~qLS 132 (248)
T COG1116 79 QEDALLPWLTVLDNVALGLELRGK----------------SKAEARERAKELLELVGLAGFEDK----------YPHQLS 132 (248)
T ss_pred ccCcccchhhHHhhheehhhcccc----------------chHhHHHHHHHHHHHcCCcchhhc----------CccccC
Confidence 99999875 999999988652100 000012346678999998655433 467899
Q ss_pred hhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHH---
Q 000647 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA--- 1334 (1374)
Q Consensus 1258 gGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~--- 1334 (1374)
||||||+|| ||||..+|++||||||-+|||+-|.+.|++.+
T Consensus 133 GGMrQRVai------------------------------------ARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~l 176 (248)
T COG1116 133 GGMRQRVAI------------------------------------ARALATRPKLLLLDEPFGALDALTREELQDELLRL 176 (248)
T ss_pred hHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999999988776643
Q ss_pred -HhcCceEEEecCCC-CchhhccceEEEEcCCC
Q 000647 1335 -KDMGITFVTSSQRP-ALIPFHSLELRLIDGEG 1365 (1374)
Q Consensus 1335 -~~~~~TvI~IaHRl-~~i~~~~~~l~l~~g~g 1365 (1374)
++.+.|+|.|||.. +.+-..|+++.|.++-|
T Consensus 177 w~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~ 209 (248)
T COG1116 177 WEETRKTVLLVTHDVDEAVYLADRVVVLSNRPG 209 (248)
T ss_pred HHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCc
Confidence 45689999999998 67788889998855433
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=324.14 Aligned_cols=197 Identities=18% Similarity=0.305 Sum_probs=167.3
Q ss_pred EEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----------cccccE
Q 000647 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKEI 515 (1374)
Q Consensus 446 ~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----------~~~~~i 515 (1374)
.+.|+.+.|+++.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 4678899998777899999999999999999999999999999999999999999999998641 124579
Q ss_pred EEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHH
Q 000647 516 FYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARL 592 (1374)
Q Consensus 516 ~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARa 592 (1374)
+|++|+|+++..|++||+.++... .+++..++++.+++.+.++..|.+.++ .....||||||||++||||
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lara 154 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSPF-------NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARA 154 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCcC-------CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHH
Confidence 999999999989999999886421 234556788888988877766544332 2356899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHH--H---HHhcCCEEEEEccChhhHhhccEEEEecC
Q 000647 593 FYHKPKFAILDECTSAVTTDMEERFCA--K---VRAMGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 593 l~~~p~illLDEptsaLD~~~~~~i~~--~---l~~~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
++.+|+++||||||++||+.+.+.+++ . +++.|.|+|++||+.+.+..+|+++++++
T Consensus 155 l~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~ 216 (218)
T cd03290 155 LYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKD 216 (218)
T ss_pred HhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecC
Confidence 999999999999999999999887776 3 33458999999999999999999999975
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=339.37 Aligned_cols=197 Identities=23% Similarity=0.272 Sum_probs=165.6
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc--------cccccE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEI 515 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~--------~~~~~i 515 (1374)
+++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+- .+++.+
T Consensus 1 ml~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 378999999996 46799999999999999999999999999999999999999999999998641 234679
Q ss_pred EEEecCCC--CCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000647 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 516 ~~v~Q~p~--l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1374)
+|+||+|. ++..|+.+|+.++............+++.++++.+++.++.++.+ .+||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrl~laraL 151 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPI--------QCLSHGQKKRVAIAGAL 151 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCc--------hhCCHHHHHHHHHHHHH
Confidence 99999986 456789999987532111001112245677899999988777654 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 594 ~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+.+|+++||||||++||+.+...+.+.+++ .|+|+|+|||+++.+ ..+|++++|++
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~ 211 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQ 211 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999888764 488999999999988 47999999975
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=338.51 Aligned_cols=198 Identities=25% Similarity=0.372 Sum_probs=167.1
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc---------cccc
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNK 513 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~---------~~~~ 513 (1374)
..|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 6 NLVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred ceEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4699999999985 56799999999999999999999999999999999999999999999998531 1246
Q ss_pred cEEEEecCCCCCcC-CHHHHhcCCCCCCc-ccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHH
Q 000647 514 EIFYVPQRPYTAVG-TLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1374)
Q Consensus 514 ~i~~v~Q~p~l~~~-Tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalAR 591 (1374)
.++|+||++.++.. |+.||+.++..... .......+++.++++.+++.+..++.+ .+||||||||++|||
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGq~qrv~lar 156 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP--------SELSGGMARRAALAR 156 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHH
Confidence 79999999988875 99999987532110 001112345677899999988777765 689999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 592 al~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|++++|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .+|++++|++
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~ 219 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVAD 219 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEEC
Confidence 99999999999999999999999998887764 3789999999998775 6999999975
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=325.15 Aligned_cols=194 Identities=22% Similarity=0.321 Sum_probs=164.9
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC----ccccccEEEEec
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~----~~~~~~i~~v~Q 520 (1374)
++++||++.|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 368999999862 4689999999999999999999999999999999999999999999864 134567999999
Q ss_pred CCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000647 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1374)
Q Consensus 521 ~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1374)
+|.++. .|+.||+.++...........+.++.++++.+++.+..++.| .+||||||||++||||++.+|++
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP--------EQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc--------ccCCHHHHHHHHHHHHHhcCCCE
Confidence 999887 599999987532110001123456788999999998888876 58999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 600 llLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+||||||++||+.+.+.+.+.+++ .+.|+|+|||+++.+. .+|++++|++
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~ 204 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQ 204 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEEC
Confidence 999999999999999999887754 3789999999999875 6999999975
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=326.37 Aligned_cols=202 Identities=26% Similarity=0.432 Sum_probs=164.0
Q ss_pred CCcEEEeeeEEEcCCC--CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccc
Q 000647 442 ANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNK 513 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~--~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~ 513 (1374)
.+.++++|+++.|++. .++++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ...++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4679999999999753 479999999999999999999999999999999999999999999999864 12356
Q ss_pred cEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCcc---ccCCCCCChhHHHHHHHH
Q 000647 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMA 590 (1374)
Q Consensus 514 ~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~---~~~g~~LSgGqkQRlalA 590 (1374)
.++|+||+|.++..|++||+.++.... ...++.+..+..++.++++.++.+.. .....+||||||||++||
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~------~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSC------SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCC------CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 799999999998899999998764321 11122222333344444444321111 112478999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 591 Ral~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
||++++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+..+|+++++++
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~ 223 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDG 223 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecC
Confidence 999999999999999999999999999998875 36899999999999988999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=333.84 Aligned_cols=197 Identities=23% Similarity=0.259 Sum_probs=166.1
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCC-----ccEEEeCCCCc--------c
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVGS--------D 510 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~-----~G~I~~~g~~~--------~ 510 (1374)
.++++||++.|+ +.++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+. .
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFYG-EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEEC-CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 378999999986 457999999999999999999999999999999999999998 99999998641 1
Q ss_pred ccccEEEEecCCCCCcCCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCCh----hHHhcCCCCccccCCCCCChhHHH
Q 000647 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQQ 585 (1374)
Q Consensus 511 ~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~L~----~~~~~~~~~~~~~~g~~LSgGqkQ 585 (1374)
.++.++|+||++.++..|++||+.++...... .....++++.++++.+++. +..++.+ .+|||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG~~q 151 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSA--------LGLSGGQQQ 151 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc--------ccCCHHHHH
Confidence 34679999999998889999999875321110 0111234577889999997 5555544 689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 586 RlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|++|||||+++|+++||||||++||+.+...+++.+++ .++|+|+|||+++.+ ..+|++++|++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYD 218 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999988765 358999999999977 57999999986
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=341.04 Aligned_cols=197 Identities=23% Similarity=0.304 Sum_probs=164.1
Q ss_pred EEEeeeEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----------c
Q 000647 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------D 510 (1374)
Q Consensus 445 i~~~~v~~~~~~~----~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----------~ 510 (1374)
++++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 7899999999753 4699999999999999999999999999999999999999999999998531 1
Q ss_pred ccccEEEEecCC--CCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCh-hHHhcCCCCccccCCCCCChhHHHHH
Q 000647 511 LNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 587 (1374)
Q Consensus 511 ~~~~i~~v~Q~p--~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~~~~~g~~LSgGqkQRl 587 (1374)
+++.|+|+||+| .++..|++||+.++............+.+.++++.+++. +..++.+ .+||||||||+
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv 154 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNP--------FELSGGQMRRV 154 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCc--------ccCCHHHHHHH
Confidence 346799999998 577789999998753211100011123456788899996 4555544 68999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 588 alARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..+|+++++++
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 220 (280)
T PRK13649 155 AIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEK 220 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999888764 489999999999987 47999999985
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=339.09 Aligned_cols=197 Identities=25% Similarity=0.364 Sum_probs=167.8
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc--------cccccEE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEIF 516 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~--------~~~~~i~ 516 (1374)
++++|+++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.|+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 78999999997556799999999999999999999999999999999999999999999998541 1356799
Q ss_pred EEecCC--CCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 517 YVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 517 ~v~Q~p--~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
|+||+| .++..|+.||+.++............+++.++++.++|.++.++.+ .+||||||||++||||++
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPP--------HHLSGGQKKRVAIAGILA 153 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCCh--------hhCCHHHHHHHHHHHHHh
Confidence 999998 4677899999987532111001112345778999999988877765 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~ 212 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSD 212 (275)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999888764 4899999999999875 7999999975
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=339.98 Aligned_cols=199 Identities=27% Similarity=0.388 Sum_probs=169.8
Q ss_pred CcEEEeeeEEEcCC-CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCc---cEEEeCCCCc------ccc
Q 000647 443 NYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS---GHIAKPGVGS------DLN 512 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~-~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~---G~I~~~g~~~------~~~ 512 (1374)
..++++|+++.|++ .+++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.+. ..+
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 46999999999975 3579999999999999999999999999999999999999987 8999998641 235
Q ss_pred ccEEEEecCCC--CCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHH
Q 000647 513 KEIFYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1374)
Q Consensus 513 ~~i~~v~Q~p~--l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1374)
++++|+||+|. ++..|+.||+.|+...........++++.++++.++|.++.++.| .+||||||||++||
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~LS~G~~qrv~la 155 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP--------ANLSGGQKQRVAIA 155 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc--------ccCCHHHHHHHHHH
Confidence 68999999984 567899999987632211101111245778899999998888877 68999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHhhccEEEEecC
Q 000647 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 591 Ral~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
|||+++|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+..||++++|++
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~ 218 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDD 218 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999887754 38999999999999989999999975
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=346.43 Aligned_cols=198 Identities=25% Similarity=0.296 Sum_probs=168.1
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----ccccccEEE
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFY 517 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~~~~~~i~~ 517 (1374)
..|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.|+|
T Consensus 40 ~~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 40 VAIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred eeEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEE
Confidence 4699999999995 5679999999999999999999999999999999999999999999999964 134578999
Q ss_pred EecCCCCC-cCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccC
Q 000647 518 VPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1374)
Q Consensus 518 v~Q~p~l~-~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~ 596 (1374)
+||++.++ ..|++||+.+.............+++.++++.++|.+..++.+ .+||||||||++|||||+++
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~--------~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARV--------SDLSGGMKRRLTLARALIND 190 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCCh--------hhCCHHHHHHHHHHHHHhcC
Confidence 99999886 4699999975321111100112234667889999988777654 58999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 597 p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|+++||||||+|||+.+...+.+.+++ .|+|+|++||+++.+. .||+|+++++
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~ 247 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEA 247 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999988765 4899999999999885 7999999985
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=333.19 Aligned_cols=197 Identities=28% Similarity=0.385 Sum_probs=167.0
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~ 517 (1374)
.++++|+++.|+ ++++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLG-GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 478999999996 4679999999999999999999999999999999999999999999999853 123467999
Q ss_pred EecCCCC-CcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc--
Q 000647 518 VPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY-- 594 (1374)
Q Consensus 518 v~Q~p~l-~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~-- 594 (1374)
+||++.+ +..|++||+.++...........+.++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY--------PQLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc--------ccCCHHHHHHHHHHHHHhcc
Confidence 9999987 56799999987542211111112345778899999988777765 689999999999999999
Q ss_pred ----cCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 595 ----HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 595 ----~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 216 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQ 216 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEEC
Confidence 59999999999999999999998887653 4789999999999875 7999999975
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=337.43 Aligned_cols=199 Identities=26% Similarity=0.333 Sum_probs=168.6
Q ss_pred CcEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccE
Q 000647 443 NYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i 515 (1374)
+.++++|+++.|++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.+
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 469999999999754 469999999999999999999999999999999999999999999999864 1245679
Q ss_pred EEEecCCC--CCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000647 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 516 ~~v~Q~p~--l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1374)
+|+||+|. ++..|+++|+.++............+++.++++.+++.++.++.+ .+||||||||++||||+
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral 157 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEP--------NALSGGQKQRVAIAGVL 157 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 99999984 455689999988643211111112345678899999988777765 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHhhccEEEEecC
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 594 ~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+++|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+..+|+++++++
T Consensus 158 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~ 217 (269)
T PRK13648 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNK 217 (269)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEEC
Confidence 999999999999999999999999887754 37899999999998888999999975
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=341.45 Aligned_cols=199 Identities=24% Similarity=0.259 Sum_probs=164.5
Q ss_pred CcEEEeeeEEEcCCC----CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC----------
Q 000647 443 NYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------- 508 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~----~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~---------- 508 (1374)
+.|+++|+++.|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 469999999999653 259999999999999999999999999999999999999999999998853
Q ss_pred -ccccccEEEEecCC--CCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCh-hHHhcCCCCccccCCCCCChhHH
Q 000647 509 -SDLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1374)
Q Consensus 509 -~~~~~~i~~v~Q~p--~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~~~~~g~~LSgGqk 584 (1374)
..+++.++|+||+| .++..|++||+.++............+++.++++.++|. ++.++.+ .+||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~--------~~LS~Gq~ 156 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSP--------FELSGGQK 156 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCCh--------hhCCHHHH
Confidence 12356799999998 356679999998753211100011123456788888984 5666544 68999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 585 QRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
||++|||||+++|+++||||||++||+.+.+.+++.+++ .|+|+|+|||+++.+ +.+|+++++++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~ 226 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHE 226 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999887653 389999999999976 57999999985
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=331.28 Aligned_cols=201 Identities=24% Similarity=0.346 Sum_probs=175.0
Q ss_pred CCcEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------cccccc
Q 000647 442 ANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 514 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~ 514 (1374)
.+.|+++|+++.|++. +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+++.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 5679999999999753 579999999999999999999999999999999999999999999999864 134578
Q ss_pred EEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHH
Q 000647 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMAR 591 (1374)
Q Consensus 515 i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalAR 591 (1374)
++|+||+|.++.+|+++|+..... ....++.++++.+++.+.++.+|.+.++ .++..||||||||++|||
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lar 169 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECK-------CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLAR 169 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCC-------CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHH
Confidence 999999999999999999864311 1344567788888999888887644332 356799999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 592 al~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
|++++|+++||||||++||+++++.+++.+++ .+.|+|++||+++.+..+|++++|++
T Consensus 170 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~ 229 (257)
T cd03288 170 AFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSR 229 (257)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEEC
Confidence 99999999999999999999999999888865 48999999999999988999999985
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=329.15 Aligned_cols=199 Identities=28% Similarity=0.452 Sum_probs=169.5
Q ss_pred EEEeeeEEEcCC--CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEE
Q 000647 445 IEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1374)
Q Consensus 445 i~~~~v~~~~~~--~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~ 516 (1374)
++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 468999999875 3579999999999999999999999999999999999999999999999854 12346799
Q ss_pred EEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHH
Q 000647 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 517 ~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal 593 (1374)
|+||+|.++..|++||+.++... ...+++.+.++..++.++.+.+|.+..+ ....+||||||||++||||+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPD------ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCC------CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 99999998888999999886432 1234456677788888887776543221 23578999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 594 ~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+.+|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+..+|+++++++
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~ 212 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQN 212 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEEC
Confidence 999999999999999999999999988764 47899999999999989999999976
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=338.54 Aligned_cols=195 Identities=27% Similarity=0.325 Sum_probs=164.5
Q ss_pred EEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc------cc----cccE
Q 000647 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DL----NKEI 515 (1374)
Q Consensus 446 ~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~------~~----~~~i 515 (1374)
.++|+++.|. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+ ++++
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 5678888774 56799999999999999999999999999999999999999999999998541 11 3579
Q ss_pred EEEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 516 ~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
+|+||+|.++. .|++||+.++...........++++.++++.++|.+..++.+ .+||||||||++||||++
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP--------DELSGGMQQRVGLARALA 176 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc--------ccCCHHHHHHHHHHHHHh
Confidence 99999998875 699999987532111001112346778999999998888876 589999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
++|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+ ..+|++++|++
T Consensus 177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~ 236 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKD 236 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999999987754 379999999999886 57999999975
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=336.17 Aligned_cols=209 Identities=23% Similarity=0.259 Sum_probs=181.2
Q ss_pred CCCCEEEeeeEEeCCCc-ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcc
Q 000647 1096 YQDSISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGC 1172 (1374)
Q Consensus 1096 ~~g~I~f~~V~~~yp~~-~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~ 1172 (1374)
..|.|+++||++.|+.. +.+++|+||+|+|||.+||+|+||||||||+++|.|+++|.+|+|.++|.++.+. ...+.
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46889999999999763 6799999999999999999999999999999999999999999999999988765 24567
Q ss_pred cEEEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccc-
Q 000647 1173 GIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN- 1251 (1374)
Q Consensus 1173 ~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~- 1251 (1374)
+++++||+|.+|++|+++|+.+... ..++.++++++.+++.+.++.+|.|+++..+
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~-----------------------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~ 152 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECK-----------------------CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTE 152 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCC-----------------------CCHHHHHHHHHHhCcHHHHhhcccccCcEecc
Confidence 8999999999999999999863211 1123355667777888888888889998763
Q ss_pred cccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHH
Q 000647 1252 WEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLY 1331 (1374)
Q Consensus 1252 ~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~ 1331 (1374)
++..||+|||||+++ |||++++|+++||||||++||+++++.+.
T Consensus 153 ~~~~LS~G~~qrl~l------------------------------------aral~~~p~llllDEPt~gLD~~~~~~l~ 196 (257)
T cd03288 153 GGENFSVGQRQLFCL------------------------------------ARAFVRKSSILIMDEATASIDMATENILQ 196 (257)
T ss_pred CCCcCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 678999999999999 99999999999999999999999998887
Q ss_pred HHHHh--cCceEEEecCCCCchhhccceEEEEcC
Q 000647 1332 RLAKD--MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1332 ~~~~~--~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
++++. .++|+|+++|+++.+...|+++.|.+|
T Consensus 197 ~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G 230 (257)
T cd03288 197 KVVMTAFADRTVVTIAHRVSTILDADLVLVLSRG 230 (257)
T ss_pred HHHHHhcCCCEEEEEecChHHHHhCCEEEEEECC
Confidence 76654 489999999999999889999999544
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=330.96 Aligned_cols=196 Identities=27% Similarity=0.395 Sum_probs=166.8
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-c-------cccccEE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-------DLNKEIF 516 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-~-------~~~~~i~ 516 (1374)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+++.++
T Consensus 2 l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 78999999985 4679999999999999999999999999999999999999999999999854 1 2356799
Q ss_pred EEecCCCCCc-CCHHHHhcCCCCC-CcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 517 YVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 517 ~v~Q~p~l~~-~Tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
|+||++.++. .|++||+.++... ........++++.++++.+++++..++.+ ..||||||||++||||++
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP--------SELSGGQQQRVAIARALA 152 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh--------hhcCHHHHHHHHHHHHHh
Confidence 9999998775 6999999875311 01001112345678899999988877765 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++|+++||||||++||+++.+.+.+.+++ .|+|+|++||+++.+. .+|+++++++
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 211 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDK 211 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999887754 4899999999999985 6999999975
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=331.57 Aligned_cols=209 Identities=23% Similarity=0.325 Sum_probs=179.5
Q ss_pred CCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEE
Q 000647 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIF 1175 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~ 1175 (1374)
|.|+++|+++.|++.+++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.+. ...|++++
T Consensus 1 ~~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 1 GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred CeEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 4689999999998666799999999999999999999999999999999999999999999999988764 24567799
Q ss_pred EecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccc-ccc
Q 000647 1176 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WED 1254 (1374)
Q Consensus 1176 ~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~-~g~ 1254 (1374)
|+||+|.+|.+|++||+.++... ..+.++.+.++.+++.+.++++|.|+++..+ +..
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 138 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPN----------------------ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGG 138 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCC----------------------CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCC
Confidence 99999999999999999765321 1123345566777888888888888887753 467
Q ss_pred CCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHH
Q 000647 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1334 (1374)
Q Consensus 1255 ~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~ 1334 (1374)
.||+|||||++| ||||+++|+++||||||++||.++.+.+.+.+
T Consensus 139 ~LS~G~~~rv~l------------------------------------a~al~~~p~llllDEP~~~LD~~~~~~l~~~l 182 (229)
T cd03254 139 NLSQGERQLLAI------------------------------------ARAMLRDPKILILDEATSNIDTETEKLIQEAL 182 (229)
T ss_pred cCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 899999999999 99999999999999999999999998887765
Q ss_pred Hh--cCceEEEecCCCCchhhccceEEEEcCC
Q 000647 1335 KD--MGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1335 ~~--~~~TvI~IaHRl~~i~~~~~~l~l~~g~ 1364 (1374)
+. .+.|+|+|+|.++.+...++++.|.+|+
T Consensus 183 ~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~ 214 (229)
T cd03254 183 EKLMKGRTSIIIAHRLSTIKNADKILVLDDGK 214 (229)
T ss_pred HHhcCCCEEEEEecCHHHHhhCCEEEEEeCCe
Confidence 53 4899999999998888889999997665
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=320.92 Aligned_cols=186 Identities=26% Similarity=0.393 Sum_probs=159.7
Q ss_pred CCcEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------cccccc
Q 000647 442 ANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 514 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~ 514 (1374)
.+.++++|+++.|++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+.++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 4 HGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 4579999999999753 579999999999999999999999999999999999999999999999864 124568
Q ss_pred EEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 515 i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
++|+||+|+++.+|++||+.+... ...+++.++++ .++. ...||||||||++||||++
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-------~~~~~~~~~l~-------~~~~--------~~~LS~G~~qrv~laral~ 141 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-------YSDEEIYGALR-------VSEG--------GLNLSQGQRQLLCLARALL 141 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-------CCHHHHHHHhh-------ccCC--------CCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999976321 12334444444 1222 3689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+..+|++++|++
T Consensus 142 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~ 198 (207)
T cd03369 142 KRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDA 198 (207)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEEC
Confidence 99999999999999999999999998875 37899999999999888999999985
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=327.48 Aligned_cols=207 Identities=25% Similarity=0.286 Sum_probs=168.5
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEE
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFY 1176 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~ 1176 (1374)
.++.+|++|.|+ ++++++|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.+||.+|.++ ..+-+.|+|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 378999999997 78899999999999999999999999999999999999999999999999999998 345567999
Q ss_pred ecCCCCCC-CcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccC
Q 000647 1177 VPQRPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1374)
Q Consensus 1177 VpQ~P~Lf-~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~ 1255 (1374)
|||+|... .-|++|-+.+|....- +-.. ...+.+.+.+.++|+.+++.++.++. -+.
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~-----------~~~~-~~~~~D~~~v~~aL~~~~~~~la~r~----------~~~ 138 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHL-----------GLFG-RPSKEDEEIVEEALELLGLEHLADRP----------VDE 138 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCccc-----------cccc-CCCHhHHHHHHHHHHHhCcHHHhcCc----------ccc
Confidence 99998654 5599998876532100 0000 00011122466789999988876653 257
Q ss_pred CChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH
Q 000647 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1335 (1374)
Q Consensus 1256 LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~ 1335 (1374)
||||||||+.| ||||..+|+||+||||||+||...+-.+.++++
T Consensus 139 LSGGerQrv~i------------------------------------ArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~ 182 (258)
T COG1120 139 LSGGERQRVLI------------------------------------ARALAQETPILLLDEPTSHLDIAHQIEVLELLR 182 (258)
T ss_pred cChhHHHHHHH------------------------------------HHHHhcCCCEEEeCCCccccCHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999876655543
Q ss_pred ----hcCceEEEecCCC-CchhhccceEEEEcCC
Q 000647 1336 ----DMGITFVTSSQRP-ALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1336 ----~~~~TvI~IaHRl-~~i~~~~~~l~l~~g~ 1364 (1374)
+.|+|+|+|.|.+ -...|.|+.+.+.+|+
T Consensus 183 ~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~ 216 (258)
T COG1120 183 DLNREKGLTVVMVLHDLNLAARYADHLILLKDGK 216 (258)
T ss_pred HHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCe
Confidence 4699999999999 5578999999997664
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=326.64 Aligned_cols=197 Identities=25% Similarity=0.428 Sum_probs=168.4
Q ss_pred EEEeeeEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc---------ccc
Q 000647 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLN 512 (1374)
Q Consensus 445 i~~~~v~~~~~~~---~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~---------~~~ 512 (1374)
++++|+++.|+++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 6899999998642 6799999999999999999999999999999999999999999999998641 134
Q ss_pred ccEEEEecCCCCCc-CCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHH
Q 000647 513 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1374)
Q Consensus 513 ~~i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1374)
+.++|+||+|.++. .|+.||+.++...... ......+++.++++.+++.+..++.| ..||||||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lS~G~~qrv~la 153 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP--------HNLSGGQKQRVAIA 153 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh--------hhCCHHHHHHHHHH
Confidence 68999999998887 6999999875321110 00112345788999999998888876 58999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHhhccEEEEecC
Q 000647 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 591 Ral~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
||++.+|+++||||||++||+++.+.+++.+++ .++|+|++||+++....+|++++|++
T Consensus 154 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~ 216 (220)
T TIGR02982 154 RALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMED 216 (220)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEEC
Confidence 999999999999999999999999998887753 47999999999998889999999975
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=333.71 Aligned_cols=198 Identities=27% Similarity=0.353 Sum_probs=168.5
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEE
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~ 516 (1374)
..++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.++
T Consensus 10 ~~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 10 TTFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred ceEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 4699999999996 4689999999999999999999999999999999999999999999999854 12456799
Q ss_pred EEecCCCCCc-CCHHHHhcCCCCCCc----ccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHH
Q 000647 517 YVPQRPYTAV-GTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1374)
Q Consensus 517 ~v~Q~p~l~~-~Tv~eni~~~~~~~~----~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalAR 591 (1374)
|+||++.++. .|+.||+.++..... ......++++.++++.+++.+..++.+ .+||||||||++|||
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~lar 160 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV--------DSLSGGERQRAWIAM 160 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc--------ccCCHHHHHHHHHHH
Confidence 9999986655 599999987632110 001112456788999999998888766 589999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 592 al~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|++.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+ ..+|++++|++
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~ 223 (265)
T PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRG 223 (265)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999998887753 389999999999988 47999999975
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=337.34 Aligned_cols=198 Identities=23% Similarity=0.303 Sum_probs=168.5
Q ss_pred cEEEeeeEEEcCCC--CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccE
Q 000647 444 YIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~--~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i 515 (1374)
.++++|+++.|++. .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 58999999999742 469999999999999999999999999999999999999999999999854 1245679
Q ss_pred EEEecCCC--CCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000647 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 516 ~~v~Q~p~--l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1374)
+|+||+|. ++..|+.|||.++............+++.++++.+++.++.++.+ ..||||||||++|||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~lAraL 155 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP--------ARLSGGQKQRVAVAGII 155 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 99999983 567899999987532111101111245678899999998887765 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHhhccEEEEecC
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 594 ~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+.+|+++||||||++||+.+.+.+++.+++ .|.|+|++||+++.+..+|++++|++
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~ 215 (277)
T PRK13642 156 ALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKA 215 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 999999999999999999999999887753 38999999999999988999999985
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=332.46 Aligned_cols=207 Identities=20% Similarity=0.263 Sum_probs=173.8
Q ss_pred EEEeeeEEeCCC-cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEE
Q 000647 1100 ISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFY 1176 (1374)
Q Consensus 1100 I~f~~V~~~yp~-~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~ 1176 (1374)
|+++||++.|++ .+++++|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.++|.++... ...|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 578999999875 46799999999999999999999999999999999999999999999999988654 234667999
Q ss_pred ecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccc-cccC
Q 000647 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WEDI 1255 (1374)
Q Consensus 1177 VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~-~g~~ 1255 (1374)
+||+|.+|+.|++|||.++.... ....+.+.++..++.++++.+|.|+++..+ ...+
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~----------------------~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 138 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGM----------------------SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAG 138 (237)
T ss_pred EcCCchhccchHHHHhhccCCCC----------------------CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCc
Confidence 99999999999999998653210 111233445556666777777778877653 4678
Q ss_pred CChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH
Q 000647 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1335 (1374)
Q Consensus 1256 LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~ 1335 (1374)
||||||||++| |||++++|+++||||||++||.++.+.+.+.++
T Consensus 139 LSgG~~qrv~l------------------------------------aral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 182 (237)
T cd03252 139 LSGGQRQRIAI------------------------------------ARALIHNPRILIFDEATSALDYESEHAIMRNMH 182 (237)
T ss_pred CCHHHHHHHHH------------------------------------HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999988877665
Q ss_pred h--cCceEEEecCCCCchhhccceEEEEcCC
Q 000647 1336 D--MGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1336 ~--~~~TvI~IaHRl~~i~~~~~~l~l~~g~ 1364 (1374)
+ .|+|+|+++|+++.+...++++.|.+|+
T Consensus 183 ~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~ 213 (237)
T cd03252 183 DICAGRTVIIIAHRLSTVKNADRIIVMEKGR 213 (237)
T ss_pred HhcCCCEEEEEeCCHHHHHhCCEEEEEECCE
Confidence 3 4899999999998888889999996553
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=329.51 Aligned_cols=197 Identities=25% Similarity=0.344 Sum_probs=167.7
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-c------ccccEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-D------LNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~-~------~~~~i~ 516 (1374)
.|+++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .++.++
T Consensus 2 ~i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFDG-FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 5789999999964 6799999999999999999999999999999999999999999999998641 1 234699
Q ss_pred EEecCCCCCcC-CHHHHhcCCCCCCcc--------cCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHH
Q 000647 517 YVPQRPYTAVG-TLRDQLIYPLTSDQE--------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1374)
Q Consensus 517 ~v~Q~p~l~~~-Tv~eni~~~~~~~~~--------~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRl 587 (1374)
|+||++.++.+ |++||+.++...... .....+.++.++++.+++.+..++.+ ..||||||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Ge~qrv 152 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA--------GLLSHGQKQWL 152 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHH
Confidence 99999998875 999999875321100 00112346788899999987776655 68999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 588 alARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+||||++++|+++||||||++||+.+.+.+++.+++ .++|+|++||+++.+. .||+++++++
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQ 217 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999998875 3689999999999885 6999999975
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=328.54 Aligned_cols=202 Identities=25% Similarity=0.322 Sum_probs=165.4
Q ss_pred EEEeeeEEeCCCc-ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc-----CCccc
Q 000647 1100 ISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCG 1173 (1374)
Q Consensus 1100 I~f~~V~~~yp~~-~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~-----~~r~~ 1173 (1374)
|+++||++.|++. +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 7899999999764 57999999999999999999999999999999999999999999999999886542 24568
Q ss_pred EEEecCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccccc
Q 000647 1174 IFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252 (1374)
Q Consensus 1174 i~~VpQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~ 1252 (1374)
++||||+|.+|. .|++||+.++... .+. .....++++.++++.+++.+...+.
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~---------- 135 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRI----------IGV------PPRDANERVSAALEKVGLEGKAHAL---------- 135 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHh----------cCC------CHHHHHHHHHHHHHHcCChhhhhCC----------
Confidence 999999999987 5999999765210 000 0001133466788888876554443
Q ss_pred ccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHH
Q 000647 1253 EDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYR 1332 (1374)
Q Consensus 1253 g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~ 1332 (1374)
...||||||||++| ||||+++|+++||||||++||.++.+.+.+
T Consensus 136 ~~~LSgG~~qrv~l------------------------------------aral~~~p~llllDEPt~~LD~~~~~~l~~ 179 (216)
T TIGR00960 136 PMQLSGGEQQRVAI------------------------------------ARAIVHKPPLLLADEPTGNLDPELSRDIMR 179 (216)
T ss_pred hhhCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 24699999999999 999999999999999999999999988877
Q ss_pred HHHh---cCceEEEecCCCCchh-hccceEEEEcC
Q 000647 1333 LAKD---MGITFVTSSQRPALIP-FHSLELRLIDG 1363 (1374)
Q Consensus 1333 ~~~~---~~~TvI~IaHRl~~i~-~~~~~l~l~~g 1363 (1374)
.+++ .|.|+|+|+|+++.+. +.|+++.+.+|
T Consensus 180 ~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 180 LFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRG 214 (216)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 6543 4899999999998775 68999999655
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=333.20 Aligned_cols=197 Identities=25% Similarity=0.349 Sum_probs=165.8
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc--------------
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------------- 509 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~-------------- 509 (1374)
.++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+-
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 589999999996 45799999999999999999999999999999999999999999999988531
Q ss_pred cccccEEEEecCCCCCc-CCHHHHhcCCCC-CCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHH
Q 000647 510 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p~l~~-~Tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRl 587 (1374)
.+++.++|+||+|.++. .|++||+.++.. ..........+++.++++.+++.+..++.+ .+||||||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~Gq~qrv 153 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYP--------RRLSGGQQQRV 153 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCCh--------hhCChHHHHHH
Confidence 13467999999998875 699999986421 011001112345678899999987766654 68999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 588 alARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+||||++++|+++||||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~ 219 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQ 219 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999887754 4899999999999885 6999999975
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=330.19 Aligned_cols=197 Identities=25% Similarity=0.354 Sum_probs=166.5
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc------------cc
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------------DL 511 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~------------~~ 511 (1374)
.++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+- ..
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 378999999996 46799999999999999999999999999999999999999999999998531 13
Q ss_pred cccEEEEecCCCCCc-CCHHHHhcCCC-CCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHH
Q 000647 512 NKEIFYVPQRPYTAV-GTLRDQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1374)
Q Consensus 512 ~~~i~~v~Q~p~l~~-~Tv~eni~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1374)
++.++|+||+|.++. .|+.||+.+.. ............++.++++.++++++.++.+ ..||||||||++|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~l 152 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP--------LHLSGGQQQRVAI 152 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHH
Confidence 467999999998886 49999997421 1000000112345778899999988888766 5899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 590 ARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||++.+|+++||||||++||+++.+.+.+.+++ .|+|+|++||+++.+. .+|+++++++
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~ 216 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMEN 216 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999887764 4899999999999885 6999999975
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=314.97 Aligned_cols=199 Identities=30% Similarity=0.375 Sum_probs=158.8
Q ss_pred CEEEeeeEEeCCCcc---cccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc---CCcc
Q 000647 1099 SISFSKLDIITPSQK---LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGC 1172 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~---~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~---~~r~ 1172 (1374)
.++.+|+++.|+... ++++|+||+|.+||++||||+||||||||.++|.|+-+|.+|+|.++|.++.... ..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999998765 7999999999999999999999999999999999999999999999998766542 3456
Q ss_pred cEEEecCCCCC---CCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchh-hhhhccCCcc
Q 000647 1173 GIFYVPQRPYT---CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL-LEREEVGWDA 1248 (1374)
Q Consensus 1173 ~i~~VpQ~P~L---f~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~-v~~~~~Gldt 1248 (1374)
.+-+|+|||+- +.-|+++-|.-|+.. .+. +....+++++|+.|||..- +.+
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~----------~~~--------~~~~~~i~~~L~~VgL~~~~l~R------- 137 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRP----------HGL--------SKSQQRIAELLDQVGLPPSFLDR------- 137 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhcc----------CCc--------cHHHHHHHHHHHHcCCCHHHHhc-------
Confidence 79999999984 223666665444321 110 0112337788999988543 222
Q ss_pred ccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHH
Q 000647 1249 NLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEE 1328 (1374)
Q Consensus 1249 ~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~ 1328 (1374)
+..+|||||+||+|| ||||.-+||+|||||||||||+-++.
T Consensus 138 ---~P~eLSGGQ~QRiaI------------------------------------ARAL~~~PklLIlDEptSaLD~siQa 178 (252)
T COG1124 138 ---RPHELSGGQRQRIAI------------------------------------ARALIPEPKLLILDEPTSALDVSVQA 178 (252)
T ss_pred ---CchhcChhHHHHHHH------------------------------------HHHhccCCCEEEecCchhhhcHHHHH
Confidence 356799999999999 99999999999999999999999998
Q ss_pred HHHHHH----HhcCceEEEecCCCCchhh-ccceEEEE
Q 000647 1329 QLYRLA----KDMGITFVTSSQRPALIPF-HSLELRLI 1361 (1374)
Q Consensus 1329 ~l~~~~----~~~~~TvI~IaHRl~~i~~-~~~~l~l~ 1361 (1374)
++.++. ++.+.|+|.|+|.++++.+ +|++..+.
T Consensus 179 ~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred HHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeee
Confidence 765543 4479999999999988755 67776663
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=343.55 Aligned_cols=199 Identities=29% Similarity=0.383 Sum_probs=166.4
Q ss_pred CcEEEeeeEEEcCC------------CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-
Q 000647 443 NYIEFSGVKVVTPT------------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~------------~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~- 509 (1374)
..++++|+++.|+. ...+++|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 46999999998863 24699999999999999999999999999999999999999999999998641
Q ss_pred --------cccccEEEEecCC--CCC-cCCHHHHhcCCCCCC--cccCCCCHHHHHHHHHHcCCh-hHHhcCCCCccccC
Q 000647 510 --------DLNKEIFYVPQRP--YTA-VGTLRDQLIYPLTSD--QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINW 575 (1374)
Q Consensus 510 --------~~~~~i~~v~Q~p--~l~-~~Tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~~~~~ 575 (1374)
.++++|+||+|+| .++ ..|+.|||.++.... ........+++.++++.+++. +..++.|
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p------- 159 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP------- 159 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc-------
Confidence 1356899999998 354 579999997653211 001111234567889999994 5667776
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 576 g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
.+||||||||++|||||+.+|+++|+||||++||..+...+++.+++ .|.|+|+||||++.+. .+|+|++|.+
T Consensus 160 -~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 160 -HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 68999999999999999999999999999999999999999887753 3899999999999986 6999999975
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=325.40 Aligned_cols=194 Identities=21% Similarity=0.317 Sum_probs=165.1
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----cccccEEEEec
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 520 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----~~~~~i~~v~Q 520 (1374)
++++||++.|++ .. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+||
T Consensus 2 l~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 2 LKLTDITWLYHH-LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred eEEEEEEEEECC-cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 789999999963 32 399999999999999999999999999999999999999999998641 12457999999
Q ss_pred CCCCCcC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000647 521 RPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1374)
Q Consensus 521 ~p~l~~~-Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1374)
+|.++.+ |+.||+.++...........++++.++++.+++++..++.| ..||||||||++||||++++|++
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~l 150 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP--------GQLSGGQRQRVALARCLVREQPI 150 (232)
T ss_pred ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc--------ccCCHHHHHHHHHHHHHhcCCCE
Confidence 9988875 99999987632110011123456888999999998888877 58999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 600 llLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|+++++++
T Consensus 151 llLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 205 (232)
T PRK10771 151 LLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVAD 205 (232)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999887754 3789999999999875 6999999975
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=321.83 Aligned_cols=194 Identities=25% Similarity=0.355 Sum_probs=166.3
Q ss_pred EEEeeeEEeCCCc----ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEE
Q 000647 1100 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIF 1175 (1374)
Q Consensus 1100 I~f~~V~~~yp~~----~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~ 1175 (1374)
|+++||++.|++. +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++| +|+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-----------~i~ 69 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-----------SIA 69 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-----------EEE
Confidence 5799999998764 4799999999999999999999999999999999999999999999998 499
Q ss_pred EecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccc-ccc
Q 000647 1176 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WED 1254 (1374)
Q Consensus 1176 ~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~-~g~ 1254 (1374)
||||+|.+|++|++||+.|+...+ ++...++++.+++.+.+...|.|+++..+ ...
T Consensus 70 ~~~q~~~l~~~t~~enl~~~~~~~-----------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 126 (204)
T cd03250 70 YVSQEPWIQNGTIRENILFGKPFD-----------------------EERYEKVIKACALEPDLEILPDGDLTEIGEKGI 126 (204)
T ss_pred EEecCchhccCcHHHHhccCCCcC-----------------------HHHHHHHHHHcCcHHHHHhccCcccceecCCCC
Confidence 999999999999999998764311 22234556667777777777888888753 567
Q ss_pred CCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHH-H
Q 000647 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYR-L 1333 (1374)
Q Consensus 1255 ~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~-~ 1333 (1374)
.||+|||||++| |||++.+|+++||||||++||.+..+.+.+ +
T Consensus 127 ~lS~G~~qrv~l------------------------------------aral~~~p~llllDEP~~~LD~~~~~~l~~~l 170 (204)
T cd03250 127 NLSGGQKQRISL------------------------------------ARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170 (204)
T ss_pred cCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 899999999999 999999999999999999999999876654 3
Q ss_pred HH---hcCceEEEecCCCCchhhccceEEEEcC
Q 000647 1334 AK---DMGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1334 ~~---~~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
++ ..|.|+|+|+|+++.+...++++.+.+|
T Consensus 171 l~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G 203 (204)
T cd03250 171 ILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203 (204)
T ss_pred HHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCC
Confidence 33 2479999999999888889999999665
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=332.29 Aligned_cols=198 Identities=22% Similarity=0.262 Sum_probs=164.8
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc-----CCccEEEeCCCCc--------
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS-------- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~-----~~~G~I~~~g~~~-------- 509 (1374)
+.|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 5 ~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 5 PKMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred cEEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 4699999999996 4679999999999999999999999999999999999974 5899999998541
Q ss_pred cccccEEEEecCCCCCcCCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCChhH----HhcCCCCccccCCCCCChhHH
Q 000647 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~----~~~~~~~~~~~~g~~LSgGqk 584 (1374)
.+++.++|+||++.++..|++||+.++...... ......+++.++++.+++.+. .++.+ .+||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgGq~ 155 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESA--------LGLSGGQQ 155 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc--------ccCCHHHH
Confidence 235679999999988888999999875321110 011123567788999998543 23322 68999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 585 QRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
||++||||++++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+ ..+|++++|++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~ 223 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYM 223 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999988865 378999999999987 57999999975
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=332.04 Aligned_cols=198 Identities=23% Similarity=0.260 Sum_probs=164.8
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCCc--------
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~~-------- 509 (1374)
..++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 6 AIIETENLNLFYT-DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred ceEEEeeeEEEeC-CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 4799999999986 46799999999999999999999999999999999999997 489999998531
Q ss_pred cccccEEEEecCCCCCcCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCChh----HHhcCCCCccccCCCCCChhHH
Q 000647 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~----~~~~~~~~~~~~~g~~LSgGqk 584 (1374)
..++.++|+||+|.++..|++||+.++....... ....++++.++++.+++.+ ..++.+ .+||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LSgG~~ 156 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA--------LSLSGGQQ 156 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc--------ccCCHHHH
Confidence 2356799999999988899999998763211100 0112345677888888743 333332 68999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 585 QRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
||++|||||+++|+++||||||++||+.+...+++.+++ .++|+|++||+++.+ ..+|++++|++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~ 224 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLN 224 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999988765 368999999999987 56999999975
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=331.73 Aligned_cols=199 Identities=20% Similarity=0.206 Sum_probs=165.7
Q ss_pred CCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc-----CCccEEEeCCCCc-------
Q 000647 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 509 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~-----~~~G~I~~~g~~~------- 509 (1374)
.+.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 11 ~~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeC-CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 45799999999996 4579999999999999999999999999999999999986 5899999998541
Q ss_pred -cccccEEEEecCCCCCcCCHHHHhcCCCCCC-cccCCCCHHHHHHHHHHcCChh----HHhcCCCCccccCCCCCChhH
Q 000647 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGE 583 (1374)
Q Consensus 510 -~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~----~~~~~~~~~~~~~g~~LSgGq 583 (1374)
.++++++|+||+|.++..|++||+.++.... .......++++.++++.+++.+ ..++.+ .+|||||
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq 161 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSG--------YSLSGGQ 161 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCC--------CCCCHHH
Confidence 2356899999999988899999998753211 0001112346778899998843 333333 6899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 584 kQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|||++||||++++|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+ ..+|+++++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 230 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYL 230 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999988865 368999999999987 47999999985
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=305.36 Aligned_cols=198 Identities=26% Similarity=0.311 Sum_probs=170.5
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----ccccccEEEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~~~~~~i~~v 518 (1374)
++++.+++++|++-..+++|+||+++.||+++|.||||+||||++|+|++++.|++|+|.++|.+ ...+++||.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 36889999999875569999999999999999999999999999999999999999999999976 3467899999
Q ss_pred ecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000647 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1374)
Q Consensus 519 ~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1374)
+-+.-++. .|++|||.|...-.+......+.++.++.+.++|.+.+++.. ..+|-|+|||++|||||+|+|
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv--------~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRV--------GEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHH--------hhhchhhHHHHHHHHHHhcCC
Confidence 96665654 699999988533222222234567888999999999998854 579999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHH---hcCCEEEEEccChhhHh-hccEEEEecC
Q 000647 598 KFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 598 ~illLDEptsaLD~~~~~~i~~~l~---~~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++++|||||||||..+.+.+.+.++ +.|+++|+.||.++.++ .||+++++..
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~ 208 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHK 208 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEec
Confidence 9999999999999999988877654 46999999999999987 8999999975
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=332.00 Aligned_cols=198 Identities=21% Similarity=0.266 Sum_probs=167.1
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-------------
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------------- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~------------- 509 (1374)
+.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 5699999999996 46799999999999999999999999999999999999999999999998531
Q ss_pred ------cccccEEEEecCCCCCc-CCHHHHhcCCCC-CCcccCCCCHHHHHHHHHHcCChhHH-hcCCCCccccCCCCCC
Q 000647 510 ------DLNKEIFYVPQRPYTAV-GTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDELS 580 (1374)
Q Consensus 510 ------~~~~~i~~v~Q~p~l~~-~Tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~~~~~~g~~LS 580 (1374)
.+++.++|+||+|.++. .|++||+.++.. ..........+++.++++.+++.+.. ++.+ .+||
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~~LS 154 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYP--------VHLS 154 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCc--------ccCC
Confidence 22467999999999886 599999986421 10000111234677889999998764 5544 6899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 581 LGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 581 gGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||||||++|||||+++|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .||+++++++
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~ 227 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQ 227 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999999999887654 4899999999999887 5999999975
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=340.37 Aligned_cols=197 Identities=22% Similarity=0.322 Sum_probs=168.0
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----ccccccEEEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~~~~~~i~~v 518 (1374)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 2 SIRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence 378999999995 4679999999999999999999999999999999999999999999999864 1245689999
Q ss_pred ecCCCCCcC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000647 519 PQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1374)
Q Consensus 519 ~Q~p~l~~~-Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1374)
||+|.++.. |+.||+.+.............+++.++++.++|.+..++.+ ..||||||||++||||++++|
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKI--------GQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCch--------hhCCHHHHHHHHHHHHHhcCC
Confidence 999998865 99999976422111000112346788999999998877765 689999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 598 KFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 598 ~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .||+++++++
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~ 207 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINK 207 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999988765 3799999999999775 6999999975
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=347.35 Aligned_cols=196 Identities=25% Similarity=0.309 Sum_probs=161.8
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-c-----c----cccc
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D----LNKE 514 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-~-----~----~~~~ 514 (1374)
++++++...| +...+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . + .+++
T Consensus 29 ~~~~~~~~~~-~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ 107 (400)
T PRK10070 29 LSKEQILEKT-GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107 (400)
T ss_pred ccHHHHHhhc-CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCC
Confidence 3334443333 23358999999999999999999999999999999999999999999999864 1 1 1357
Q ss_pred EEEEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000647 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 515 i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1374)
++||||++.++. .|++||+.++............+++.++++.++|.++.++.| .+||||||||++|||||
T Consensus 108 igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~--------~~LSgGq~QRv~LArAL 179 (400)
T PRK10070 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP--------DELSGGMRQRVGLARAL 179 (400)
T ss_pred EEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc--------ccCCHHHHHHHHHHHHH
Confidence 999999998886 599999998642211111112356778999999999888877 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 594 ~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+++|+++||||||++||+.+.+.+++.+++ .|+|+|+|||+++.+ +.+|++++|++
T Consensus 180 ~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~ 240 (400)
T PRK10070 180 AINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQN 240 (400)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999887753 489999999999887 57999999985
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=329.93 Aligned_cols=197 Identities=21% Similarity=0.328 Sum_probs=168.0
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~ 517 (1374)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 478999999986 4679999999999999999999999999999999999999999999999864 123467999
Q ss_pred EecCCCCCcC-CHHHHhcCCCCCC----cccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000647 518 VPQRPYTAVG-TLRDQLIYPLTSD----QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1374)
Q Consensus 518 v~Q~p~l~~~-Tv~eni~~~~~~~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1374)
+||++.++.+ |+.||+.++.... .......++++.++++.+++.+..++.+ ..||||||||++||||
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~lara 152 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL--------TDLSGGQRQRAFLAMV 152 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc--------ccCCHHHHHHHHHHHH
Confidence 9999988765 9999998753210 0001112346778899999988877765 6899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 593 l~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|+++++++
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 213 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLAN 213 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999888754 4899999999999874 7999999975
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=331.46 Aligned_cols=196 Identities=27% Similarity=0.351 Sum_probs=166.4
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc---------------
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------------- 509 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~--------------- 509 (1374)
|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 47899999996 46799999999999999999999999999999999999999999999988531
Q ss_pred ----cccccEEEEecCCCCCc-CCHHHHhcCCCCC-CcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhH
Q 000647 510 ----DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGE 583 (1374)
Q Consensus 510 ----~~~~~i~~v~Q~p~l~~-~Tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGq 583 (1374)
.+++.++|+||++.++. .|+.||+.++... ........++++.++++.+++.+..++.+ .+|||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~ 151 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP--------AQLSGGQ 151 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh--------hhcCHHH
Confidence 23567999999998875 7999999874211 00001112346778999999998888766 6899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 584 kQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|||++||||++++|+++||||||++||+.+...+.+.+++ .|+|+|+|||+++.+ ..+|++++|++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 222 (252)
T TIGR03005 152 QQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDK 222 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999999887754 389999999999988 57999999975
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=330.43 Aligned_cols=207 Identities=27% Similarity=0.353 Sum_probs=177.8
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEe
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYV 1177 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~V 1177 (1374)
|+++|+++.|++...+++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.+. ...|..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 47899999998667799999999999999999999999999999999999999999999999988765 2345679999
Q ss_pred cCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccc-cccCC
Q 000647 1178 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WEDIL 1256 (1374)
Q Consensus 1178 pQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~-~g~~L 1256 (1374)
||+|.+|++|+++|+.++... ..+.++.+.++.+++.+.++.+|.|+++..+ +...|
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~----------------------~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~L 138 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPD----------------------ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKL 138 (236)
T ss_pred CCCChhhcchHHHHHhhcCCC----------------------CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcC
Confidence 999999999999999875321 1123345566777787787888889888764 56889
Q ss_pred ChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh
Q 000647 1257 SLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD 1336 (1374)
Q Consensus 1257 SgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~ 1336 (1374)
|+|||||++| ||||+++|+++||||||++||+++.+.+.+.+++
T Consensus 139 S~G~~~rl~l------------------------------------a~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 182 (236)
T cd03253 139 SGGEKQRVAI------------------------------------ARAILKNPPILLLDEATSALDTHTEREIQAALRD 182 (236)
T ss_pred CHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999888776643
Q ss_pred --cCceEEEecCCCCchhhccceEEEEcCC
Q 000647 1337 --MGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1337 --~~~TvI~IaHRl~~i~~~~~~l~l~~g~ 1364 (1374)
.|.|+|+++|+++.+..+|+.+.+.+|.
T Consensus 183 ~~~~~tiii~sh~~~~~~~~d~~~~l~~g~ 212 (236)
T cd03253 183 VSKGRTTIVIAHRLSTIVNADKIIVLKDGR 212 (236)
T ss_pred hcCCCEEEEEcCCHHHHHhCCEEEEEECCE
Confidence 3889999999998888899999996553
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=333.73 Aligned_cols=198 Identities=29% Similarity=0.369 Sum_probs=164.5
Q ss_pred cEEEeeeEEEcCC--------CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc------
Q 000647 444 YIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------ 509 (1374)
Q Consensus 444 ~i~~~~v~~~~~~--------~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~------ 509 (1374)
.|+++||++.|++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 4789999999863 36799999999999999999999999999999999999999999999998541
Q ss_pred ---cccccEEEEecCCC--CC-cCCHHHHhcCCCCCC-cccCCCCHHHHHHHHHHcCCh-hHHhcCCCCccccCCCCCCh
Q 000647 510 ---DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSL 581 (1374)
Q Consensus 510 ---~~~~~i~~v~Q~p~--l~-~~Tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~~~~~g~~LSg 581 (1374)
.+++.|+|+||+|. ++ ..|++||+.++.... .......++++.++++.+++. +..++.+ ..|||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~~LSg 153 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLP--------RQLSG 153 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCCh--------hhCCH
Confidence 13467999999983 43 469999997643211 001112345678899999996 5566544 68999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 582 GqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||||++||||++++|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .+|+++++++
T Consensus 154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~ 226 (265)
T TIGR02769 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDK 226 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeC
Confidence 999999999999999999999999999999999998887754 3899999999999886 7999999975
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=325.93 Aligned_cols=208 Identities=26% Similarity=0.361 Sum_probs=178.7
Q ss_pred CCEEEeeeEEeCCCc-ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc--CCcccE
Q 000647 1098 DSISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGI 1174 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~~-~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~--~~r~~i 1174 (1374)
|+|+++|+++.|++. +++++|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.++|.++...+ ..++.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 468999999999763 67999999999999999999999999999999999999999999999999886542 345679
Q ss_pred EEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccc-cc
Q 000647 1175 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WE 1253 (1374)
Q Consensus 1175 ~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~-~g 1253 (1374)
+++||+|.+|..|++||+.++... ...+.+.++++.+++.+.++..|.|+++... ..
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~----------------------~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 138 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPL----------------------ADDERILRAAELAGVTDFVNKHPNGLDLQIGERG 138 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCC----------------------CCHHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence 999999999999999999765321 0122345677788888888888889998863 46
Q ss_pred cCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHH
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL 1333 (1374)
Q Consensus 1254 ~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~ 1333 (1374)
..||||||||++| |||++++|+++||||||++||.++.+.+.+.
T Consensus 139 ~~LSgG~~qrl~l------------------------------------a~al~~~p~llllDEPt~~LD~~~~~~l~~~ 182 (220)
T cd03245 139 RGLSGGQRQAVAL------------------------------------ARALLNDPPILLLDEPTSAMDMNSEERLKER 182 (220)
T ss_pred ccCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 7899999999999 9999999999999999999999999988887
Q ss_pred HHh--cCceEEEecCCCCchhhccceEEEEcC
Q 000647 1334 AKD--MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1334 ~~~--~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
+++ .++|+|+++|+++...+.|+++.+.+|
T Consensus 183 l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g 214 (220)
T cd03245 183 LRQLLGDKTLIIITHRPSLLDLVDRIIVMDSG 214 (220)
T ss_pred HHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 654 248999999999888888999999654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=329.29 Aligned_cols=201 Identities=21% Similarity=0.227 Sum_probs=165.4
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc---CCccEEEeCCCC------cccccc
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG------SDLNKE 514 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~---~~~G~I~~~g~~------~~~~~~ 514 (1374)
.++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ ...++.
T Consensus 2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 478999999996 4679999999999999999999999999999999999974 699999999864 123567
Q ss_pred EEEEecCCCCCcCCHHHHhcCCCCCCccc--CCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000647 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEV--EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1374)
Q Consensus 515 i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1374)
++|+||+|.++..|++||+.++....... ....++++.++++.+++.+.+.... .....+||||||||++||||
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----~~~~~~LS~G~~qrv~lara 156 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL----KQNALALSGGQQQRLCIARA 156 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHh----cCCcccCCHHHHHHHHHHHH
Confidence 99999999999899999998753211110 1122345778899999964332110 01136899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 593 l~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
++++|+++||||||++||+.+...+.+.+++ .++|+|+|||+++.+ ..+|+++++++
T Consensus 157 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 216 (246)
T PRK14269 157 LAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHL 216 (246)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEEC
Confidence 9999999999999999999999999988865 489999999999977 47999999985
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=317.89 Aligned_cols=188 Identities=27% Similarity=0.404 Sum_probs=162.8
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----ccccccEEEEe
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~~~~~~i~~v~ 519 (1374)
++++|+++.|+ ++++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++++++|+|
T Consensus 1 l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeC-CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 46899999985 4679999999999999999999999999999999999999999999999854 22456899999
Q ss_pred cCCCCC-cCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000647 520 QRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 520 Q~p~l~-~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
|++.++ ..|++||+.+.... ..++++.++++.+++.++.++.+ .+||||||||++||||++++|+
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHAD------HSDEQVEEALARVGLNGFEDRPV--------AQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred cccccCCCcCHHHHHHhhccc------ccHHHHHHHHHHcCChhhhcCch--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999876 47999999875321 24567888999999988776654 5899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhh-HhhccEEEEe
Q 000647 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL-VAFHDVVLSL 647 (1374)
Q Consensus 599 illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~-~~~~d~il~l 647 (1374)
++||||||++||+.+.+.+.+.+++ .|.|+|++||+... ...+++++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999988764 48999999998664 5678888877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=299.85 Aligned_cols=205 Identities=21% Similarity=0.247 Sum_probs=172.1
Q ss_pred cEEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-ccccccEEEEecC
Q 000647 444 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQR 521 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-~~~~~~i~~v~Q~ 521 (1374)
.+..++++..|++. ..+++|+|++|.+||.+.++||||||||||+++++|+.+|..|+|.++|.. ..-...=|.|+|+
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 35677888888642 459999999999999999999999999999999999999999999999853 1112356999999
Q ss_pred CCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000647 522 PYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1374)
Q Consensus 522 p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~il 600 (1374)
+-+++ .|+.||+.|+.......+....+...+.+..+||+++-++++ .+||||||||+.|||||..+|+++
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i--------~qLSGGmrQRvGiARALa~eP~~L 154 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI--------WQLSGGMRQRVGIARALAVEPQLL 154 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccce--------EeecchHHHHHHHHHHhhcCcceE
Confidence 98776 599999999986544333334456778899999999887776 479999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHH----hcCCEEEEEccChhhHh-hccEEEEecCCCceEEe
Q 000647 601 ILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVA-FHDVVLSLDGEGEWRVH 656 (1374)
Q Consensus 601 lLDEptsaLD~~~~~~i~~~l~----~~~~TiI~vtH~~~~~~-~~d~il~l~~~g~~~~~ 656 (1374)
+||||++|||.-+.+++.+.+- +.|+.+++|||+.+..- .++++++|+...+..++
T Consensus 155 lLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~ 215 (259)
T COG4525 155 LLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE 215 (259)
T ss_pred eecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeE
Confidence 9999999999999999988764 46999999999998765 58999999875454443
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=294.52 Aligned_cols=185 Identities=27% Similarity=0.408 Sum_probs=161.0
Q ss_pred CCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCH
Q 000647 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTL 529 (1374)
Q Consensus 456 ~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv 529 (1374)
++.++|+++||++.+||+++|+||||||||||+|.++-+.+|++|++++.|.+ ..+|.+++||.|.|.+|.+||
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 45789999999999999999999999999999999999999999999999975 347889999999999999999
Q ss_pred HHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 000647 530 RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609 (1374)
Q Consensus 530 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaL 609 (1374)
.||+.||..... ...+.....+.|+.+++.+.+-..+ ..+||||||||+||+|-|.--|+||+||||||||
T Consensus 94 eDNlifP~~~r~--rr~dr~aa~~llar~~l~~~~L~k~-------it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 94 EDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKN-------ITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hhccccchHHhc--cCCChHHHHHHHHHcCCchhhhcch-------hhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 999999965432 2345667788899999977543322 2579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH----HhcCCEEEEEccChhh-HhhccEEEEecC
Q 000647 610 TTDMEERFCAKV----RAMGTSCITISHRPAL-VAFHDVVLSLDG 649 (1374)
Q Consensus 610 D~~~~~~i~~~l----~~~~~TiI~vtH~~~~-~~~~d~il~l~~ 649 (1374)
|+.+.+.+-+.+ ++.+..++.|||+.+. +..+|+++.+..
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~ 209 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQP 209 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEecc
Confidence 999888776654 4678999999999987 788999998864
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=331.35 Aligned_cols=199 Identities=23% Similarity=0.258 Sum_probs=164.4
Q ss_pred CCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCCc-------
Q 000647 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS------- 509 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~~------- 509 (1374)
.+.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 10 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 10 QPQIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred ceeEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 34799999999985 46799999999999999999999999999999999999985 799999988541
Q ss_pred -cccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChh----HHhcCCCCccccCCCCCChhHH
Q 000647 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1374)
Q Consensus 510 -~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----~~~~~~~~~~~~~g~~LSgGqk 584 (1374)
.+++.++|+||++.++..|++||+.++...........++++.++++.+++.+ ..++. ...||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgG~~ 160 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSP--------ALSLSGGQQ 160 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCC--------hhhCCHHHH
Confidence 23567999999999888999999987532111000111235677889888843 23332 268999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 585 QRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
||++|||||+++|+++||||||++||+.+...+++.+++ .++|+|++||+++.+ ..||++++|++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~ 228 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLM 228 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999988765 378999999999987 56999999975
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=330.27 Aligned_cols=198 Identities=19% Similarity=0.238 Sum_probs=164.9
Q ss_pred CCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc-----CCccEEEeCCCC--------
Q 000647 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~-----~~~G~I~~~g~~-------- 508 (1374)
...++++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 11 ~~~l~i~nl~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 11 NIIISLQNVTISYG-TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred CceEEEEeEEEEEC-CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 45799999999986 4679999999999999999999999999999999999987 689999999853
Q ss_pred ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChh----HHhcCCCCccccCCCCCChhHH
Q 000647 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1374)
Q Consensus 509 ~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----~~~~~~~~~~~~~g~~LSgGqk 584 (1374)
.++++.++|+||+|.++..|++||+.++...... ....++++.++++.+++.. ..++. ..+||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~ 160 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGY-TGDMDELVERSLRKAAVWDECKDKLNES--------GYSLSGGQQ 160 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCC-cHHHHHHHHHHHHHhCCcchhhhhhCCC--------cccCCHHHH
Confidence 1235679999999998888999999886432111 1112345667788887743 23332 268999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 585 QRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
||++|||||+++|+++||||||++||+.+.+.+++.+++ .+.|+|++||+++.+ ..+|++++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 999999999999999999999999999999999988865 368999999999877 57999999985
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=329.69 Aligned_cols=197 Identities=22% Similarity=0.321 Sum_probs=166.0
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc------c-ccccEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~------~-~~~~i~ 516 (1374)
.++++|+++.|+ ++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .+..++
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 5 LLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred eEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 689999999986 46899999999999999999999999999999999999999999999998641 1 234599
Q ss_pred EEecCCCCCcC-CHHHHhcCCCCCC-------c--------ccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCC
Q 000647 517 YVPQRPYTAVG-TLRDQLIYPLTSD-------Q--------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELS 580 (1374)
Q Consensus 517 ~v~Q~p~l~~~-Tv~eni~~~~~~~-------~--------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LS 580 (1374)
|+||+|.++.. |++||+.++.... . ........++.++++.+++.+..++.+ .+||
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS 155 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA--------GNLA 155 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh--------hhCC
Confidence 99999998875 9999999753210 0 000011235677889999988777765 6899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---c-CCEEEEEccChhhHh-hccEEEEecC
Q 000647 581 LGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 581 gGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~-~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||||||++||||++++|+++||||||++||+.+.+.+.+.+++ . |+|+|++||+++.+. .+|+++++++
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999887753 3 899999999999884 6999999975
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=326.78 Aligned_cols=197 Identities=23% Similarity=0.302 Sum_probs=165.4
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc------c-ccccEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~------~-~~~~i~ 516 (1374)
.++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .++.++
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 488999999986 46899999999999999999999999999999999999999999999998541 1 346799
Q ss_pred EEecCCCCCc-CCHHHHhcCCCCCCc-ccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 517 YVPQRPYTAV-GTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 517 ~v~Q~p~l~~-~Tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
|+||++.++. .|++||+.++..... ......+.++.++++.+++.+..++.+ ..||||||||++||||++
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG--------QSLSGGERRRVEIARALA 153 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcch--------hhCCHHHHHHHHHHHHHh
Confidence 9999998877 599999987532111 001112345778899999987766644 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHH---hcCCEEEEEccChhhH-hhccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~---~~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
++|+++||||||++||+.+.+.+.+.++ +.|+|+|++||+++.+ ..+|+++++++
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQ 212 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeC
Confidence 9999999999999999999998877665 3589999999999765 57999999975
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=318.33 Aligned_cols=191 Identities=27% Similarity=0.362 Sum_probs=164.0
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----ccccccEEEEe
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~~~~~~i~~v~ 519 (1374)
++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|++
T Consensus 2 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 2 LEARNLACERD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred eEEEEEEEEEC-CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 78999999985 4679999999999999999999999999999999999999999999999854 12456799999
Q ss_pred cCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000647 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 520 Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
|++.++. .|++||+.++..... ...++++.++++.+++.++.++.+ ..||||||||++||||++++|+
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHG---PGDDEALWEALAQVGLAGFEDVPV--------RQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcC---ccHHHHHHHHHHHcCCHHHhhCCh--------hhcCHHHHHHHHHHHHHhcCCC
Confidence 9987765 699999987542211 123467788999999988777654 6899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEe
Q 000647 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSL 647 (1374)
Q Consensus 599 illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l 647 (1374)
++||||||++||+.+.+.+++.+++ .+.|+|++||+++++. +.++++++
T Consensus 150 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 150 LWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999999887764 4889999999999985 44677766
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=343.30 Aligned_cols=203 Identities=21% Similarity=0.255 Sum_probs=167.8
Q ss_pred EEEeeeEEeCCC---cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc-----CCc
Q 000647 1100 ISFSKLDIITPS---QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSG 1171 (1374)
Q Consensus 1100 I~f~~V~~~yp~---~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~-----~~r 1171 (1374)
|+|+||++.|++ .+++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.+|..++ ..|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999998864 257999999999999999999999999999999999999999999999999998752 246
Q ss_pred ccEEEecCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc
Q 000647 1172 CGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1374)
Q Consensus 1172 ~~i~~VpQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~ 1250 (1374)
++|++|||++.+|+ .|++||+.||.... +.. .....+.+.++++.++|.+..++.
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~----------~~~------~~~~~~~v~e~l~~vgL~~~~~~~-------- 137 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELD----------NTP------KDEIKRKVTELLALVGLGDKHDSY-------- 137 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHc----------CCC------HHHHHHHHHHHHHHcCCchhhhCC--------
Confidence 78999999999995 79999998764210 000 000123456788888886654433
Q ss_pred ccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHH
Q 000647 1251 NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL 1330 (1374)
Q Consensus 1251 ~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l 1330 (1374)
..+||||||||++| ||||..+|++||||||||+||+++.+.+
T Consensus 138 --~~~LSgGqkQRV~I------------------------------------ARAL~~~P~iLLlDEPts~LD~~t~~~i 179 (343)
T TIGR02314 138 --PSNLSGGQKQRVAI------------------------------------ARALASNPKVLLCDEATSALDPATTQSI 179 (343)
T ss_pred --hhhCCHHHHHHHHH------------------------------------HHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence 46799999999999 9999999999999999999999999877
Q ss_pred HHHHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1331 YRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1331 ~~~~~~----~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
.+++++ .|+|+|.|+|+++.+ +++|+++.|.+|+
T Consensus 180 ~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~ 218 (343)
T TIGR02314 180 LELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGE 218 (343)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 665543 489999999999877 6789999996654
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=330.78 Aligned_cols=199 Identities=19% Similarity=0.196 Sum_probs=166.1
Q ss_pred CCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCCc-------
Q 000647 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS------- 509 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~~------- 509 (1374)
.+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 17 ~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 35799999999996 46799999999999999999999999999999999999975 899999998541
Q ss_pred -cccccEEEEecCCCCCcCCHHHHhcCCCCCCcc--cCCCCHHHHHHHHHHcCChhH----HhcCCCCccccCCCCCChh
Q 000647 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLG 582 (1374)
Q Consensus 510 -~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~----~~~~~~~~~~~~g~~LSgG 582 (1374)
.+++.++|+||+|.++..|+.||+.++...... ......+++.++++.+++.+. .++.+ .+||||
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG 167 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPG--------TGLSGG 167 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCc--------ccCCHH
Confidence 235679999999998888999999875321110 011123456788999999653 23322 689999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 583 qkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+ ..+|+++++++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~ 237 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHL 237 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEEC
Confidence 99999999999999999999999999999999999988865 368999999999988 56899999985
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=324.99 Aligned_cols=193 Identities=25% Similarity=0.356 Sum_probs=161.5
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-------cccccEEE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIFY 517 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~-------~~~~~i~~ 517 (1374)
|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ..++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 46899999986 46799999999999999999999999999999999999999999999998541 12457999
Q ss_pred EecCCCCCcC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcC-ChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000647 518 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1374)
Q Consensus 518 v~Q~p~l~~~-Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1374)
+||++.++.. |++||+.++...... ...+...++++.++ +.+..++.+ .+||||||||++||||+++
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~---~~~~~~~~~l~~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPR---RSRKIPDEIYELFPVLKEMLGRRG--------GDLSGGQQQQLAIARALVT 148 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCc---chHHHHHHHHHHHHhHHHHhhCCh--------hhCCHHHHHHHHHHHHHhc
Confidence 9999998875 999999875322111 11233466677766 455555544 6899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 596 ~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|+++++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~ 207 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMER 207 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999887764 3789999999999887 6999999975
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=309.06 Aligned_cols=166 Identities=53% Similarity=0.985 Sum_probs=152.0
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecC
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ 1179 (1374)
|+++||++.|++.+++++|+||+|+|||.++|+||||||||||+++|.|+++|.+|+|.++|. ++++|+||
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---------~~i~~~~q 71 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---------EDLLFLPQ 71 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---------ceEEEECC
Confidence 578999999986677999999999999999999999999999999999999999999999874 57999999
Q ss_pred CCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCChh
Q 000647 1180 RPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLG 1259 (1374)
Q Consensus 1180 ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSgG 1259 (1374)
+|.++++|++||+.++ +...||+|
T Consensus 72 ~~~~~~~tv~~nl~~~--------------------------------------------------------~~~~LS~G 95 (166)
T cd03223 72 RPYLPLGTLREQLIYP--------------------------------------------------------WDDVLSGG 95 (166)
T ss_pred CCccccccHHHHhhcc--------------------------------------------------------CCCCCCHH
Confidence 9999999999998632 12458999
Q ss_pred hhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHhcCc
Q 000647 1260 EQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGI 1339 (1374)
Q Consensus 1260 QrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~~~~ 1339 (1374)
||||+++ |||++++|+++||||||++||.++.+.+.+.+++.++
T Consensus 96 ~~~rv~l------------------------------------aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~ 139 (166)
T cd03223 96 EQQRLAF------------------------------------ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGI 139 (166)
T ss_pred HHHHHHH------------------------------------HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCC
Confidence 9999999 9999999999999999999999999999887776789
Q ss_pred eEEEecCCCCchhhccceEEEEcCCCCe
Q 000647 1340 TFVTSSQRPALIPFHSLELRLIDGEGNW 1367 (1374)
Q Consensus 1340 TvI~IaHRl~~i~~~~~~l~l~~g~g~~ 1367 (1374)
|+|+|+|+++...+.|+++.+ +.+|.|
T Consensus 140 tiiivsh~~~~~~~~d~i~~l-~~~~~~ 166 (166)
T cd03223 140 TVISVGHRPSLWKFHDRVLDL-DGEGGW 166 (166)
T ss_pred EEEEEeCChhHHhhCCEEEEE-cCCCCC
Confidence 999999999988999999999 788887
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=329.67 Aligned_cols=198 Identities=21% Similarity=0.252 Sum_probs=168.2
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEE
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~ 516 (1374)
..|+++|+++.|+ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 6 ~~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 6 ARLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred cEEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 4799999999996 4679999999999999999999999999999999999999999999999864 12346799
Q ss_pred EEecCCCCCc-CCHHHHhcCCCCCCc----ccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHH
Q 000647 517 YVPQRPYTAV-GTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1374)
Q Consensus 517 ~v~Q~p~l~~-~Tv~eni~~~~~~~~----~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalAR 591 (1374)
|+||++.++. .|++||+.++..... ......++++.++++.+++.++.++.+ .+||||||||++|||
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Gq~qrv~lar 156 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV--------DTLSGGQRQRAWIAM 156 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc--------ccCChHHHHHHHHHH
Confidence 9999998765 699999987531110 000112346778999999998877765 689999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 592 al~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|++++|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..+|+++++++
T Consensus 157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 219 (265)
T PRK10253 157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALRE 219 (265)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999887754 378999999999876 57999999975
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=328.13 Aligned_cols=196 Identities=30% Similarity=0.401 Sum_probs=166.3
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v 518 (1374)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 68899999985 4689999999999999999999999999999999999999999999999854 1234579999
Q ss_pred ecCCCC-CcCCHHHHhcCCCCCC-cc---cCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000647 519 PQRPYT-AVGTLRDQLIYPLTSD-QE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 519 ~Q~p~l-~~~Tv~eni~~~~~~~-~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1374)
||+|.+ +..|++||+.++.... .. .....++++.++++.+++.+..++.+ ..||||||||++||||+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al 152 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM--------STLSGGERQRVHVARAL 152 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHHHHHHHHHH
Confidence 999864 4579999998753211 00 01112346788999999988777765 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 594 ~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+ ..+|++++|++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDG 212 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999887764 478999999999998 57999999975
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=325.17 Aligned_cols=210 Identities=24% Similarity=0.355 Sum_probs=170.9
Q ss_pred CCCCEEEeeeEEeCCCc--ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCc
Q 000647 1096 YQDSISFSKLDIITPSQ--KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSG 1171 (1374)
Q Consensus 1096 ~~g~I~f~~V~~~yp~~--~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r 1171 (1374)
..|.|+++|+++.|++. +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ...+
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 36889999999999763 5799999999999999999999999999999999999999999999999988765 2345
Q ss_pred ccEEEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccc
Q 000647 1172 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN 1251 (1374)
Q Consensus 1172 ~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~ 1251 (1374)
.+++|+||+|.+|++|++||+.++..... ..+++...+..++...++.++.|+++..+
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~l~~gl~~~~~ 145 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCS----------------------FECVKEAAQKAHAHSFISELASGYDTEVG 145 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCC----------------------HHHHHHHHHHcCcHHHHHhccccccchhh
Confidence 67999999999999999999987643110 00111112223334445555556665542
Q ss_pred -cccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHH
Q 000647 1252 -WEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL 1330 (1374)
Q Consensus 1252 -~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l 1330 (1374)
...+||||||||++| |||++++|+++||||||++||.++.+.+
T Consensus 146 ~~~~~LSgG~~qrv~l------------------------------------aral~~~p~llllDEPt~~LD~~~~~~l 189 (226)
T cd03248 146 EKGSQLSGGQKQRVAI------------------------------------ARALIRNPQVLILDEATSALDAESEQQV 189 (226)
T ss_pred cCCCcCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 457899999999999 9999999999999999999999999988
Q ss_pred HHHHHh--cCceEEEecCCCCchhhccceEEEEcC
Q 000647 1331 YRLAKD--MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1331 ~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
.+.+++ .+.|+|+|+|+++.+...|+++.|.+|
T Consensus 190 ~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 224 (226)
T cd03248 190 QQALYDWPERRTVLVIAHRLSTVERADQILVLDGG 224 (226)
T ss_pred HHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCC
Confidence 876654 368999999999988888999998554
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=325.01 Aligned_cols=196 Identities=28% Similarity=0.404 Sum_probs=166.6
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----cccccEEEEec
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 520 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----~~~~~i~~v~Q 520 (1374)
++++|+++.|+ ++++++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+||
T Consensus 1 i~i~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFG-SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEEC-CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 46899999986 46799999999999999999999999999999999999999999999998641 23467999999
Q ss_pred CCCCCcC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000647 521 RPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1374)
Q Consensus 521 ~p~l~~~-Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1374)
+|.++.+ |++||+.+.............+++.++++.+++.++.++.+ ..||+|||||++||||++++|++
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP--------NQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 9998875 99999987532211111112345678899999988777765 58999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHh---c-CCEEEEEccChhhH-hhccEEEEecC
Q 000647 600 AILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 600 llLDEptsaLD~~~~~~i~~~l~~---~-~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+||||||++||+++++.+.+.+++ . ++|+|++||+++.+ +.+|+++++++
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~ 206 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSN 206 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEEC
Confidence 999999999999999999988764 3 79999999999986 56999999985
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=327.94 Aligned_cols=197 Identities=24% Similarity=0.294 Sum_probs=163.6
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCC------cccc
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG------SDLN 512 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~------~~~~ 512 (1374)
.++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..++
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 4899999999864 6799999999999999999999999999999999999974 69999999864 1345
Q ss_pred ccEEEEecCCCCC-cCCHHHHhcCCCCCCcc--cCCCCHHHHHHHHHHcCChhH----HhcCCCCccccCCCCCChhHHH
Q 000647 513 KEIFYVPQRPYTA-VGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 585 (1374)
Q Consensus 513 ~~i~~v~Q~p~l~-~~Tv~eni~~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~----~~~~~~~~~~~~g~~LSgGqkQ 585 (1374)
+.++|+||+|.++ ..|++||+.++...... ......+++.++++.+++.+. .++.+ .+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG~~q 153 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPA--------GKLSGGQQQ 153 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc--------ccCCHHHHH
Confidence 6899999999754 57999999875321110 001123467788999998643 33333 689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 586 RlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|++||||++++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+ ..+|++++|++
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYK 220 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999999999999999988865 378999999999987 47999999975
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=325.18 Aligned_cols=202 Identities=25% Similarity=0.312 Sum_probs=165.3
Q ss_pred EEEeeeEEeCCCc---ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc------CC
Q 000647 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------GS 1170 (1374)
Q Consensus 1100 I~f~~V~~~yp~~---~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~------~~ 1170 (1374)
|+++||++.|++. +++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4789999998753 67999999999999999999999999999999999999999999999999887642 13
Q ss_pred cccEEEecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccc
Q 000647 1171 GCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 1249 (1374)
Q Consensus 1171 r~~i~~VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~ 1249 (1374)
+++++||||+|.+|.+ |++||+.++.... +. .....++.+.++++.++|.+..++.
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~------- 137 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLA----------GV------PKKERRERAEELLERVGLGDRLNHY------- 137 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhc----------CC------CHHHHHHHHHHHHHHcCCchhhhcC-------
Confidence 4679999999999987 9999997643100 00 0000123466778887775544332
Q ss_pred cccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHH
Q 000647 1250 LNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQ 1329 (1374)
Q Consensus 1250 ~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~ 1329 (1374)
...||||||||++| ||||+++|+++||||||++||+++.+.
T Consensus 138 ---~~~LS~G~~qrv~l------------------------------------a~al~~~p~lllLDEP~~~LD~~~~~~ 178 (218)
T cd03255 138 ---PSELSGGQQQRVAI------------------------------------ARALANDPKIILADEPTGNLDSETGKE 178 (218)
T ss_pred ---hhhcCHHHHHHHHH------------------------------------HHHHccCCCEEEEcCCcccCCHHHHHH
Confidence 35799999999999 999999999999999999999999988
Q ss_pred HHHHHHh----cCceEEEecCCCCchhhccceEEEEcC
Q 000647 1330 LYRLAKD----MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1330 l~~~~~~----~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
+.+++++ .|+|+|+|+|+++.+.+.|+++.+.+|
T Consensus 179 l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G 216 (218)
T cd03255 179 VMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216 (218)
T ss_pred HHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCC
Confidence 7775543 489999999999888899999999655
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=322.81 Aligned_cols=196 Identities=22% Similarity=0.310 Sum_probs=162.4
Q ss_pred EEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecCC
Q 000647 1101 SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 1180 (1374)
Q Consensus 1101 ~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ~ 1180 (1374)
+++||++.|++.+.+|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.. ...+++++|+||+
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~i~~~~q~ 79 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA-KERRKSIGYVMQD 79 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh-HHhhcceEEEecC
Confidence 367999988754679999999999999999999999999999999999999999999999998754 2345579999999
Q ss_pred C--CCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCCh
Q 000647 1181 P--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1374)
Q Consensus 1181 P--~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSg 1258 (1374)
| .+|..|++||+.++.... ....+++.++++.+++.+..++. ...|||
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~--------------------~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 129 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKEL--------------------DAGNEQAETVLKDLDLYALKERH----------PLSLSG 129 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhc--------------------CccHHHHHHHHHHcCCchhcCCC----------chhCCH
Confidence 8 467889999998653210 01123467788888886554433 246999
Q ss_pred hhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--
Q 000647 1259 GEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD-- 1336 (1374)
Q Consensus 1259 GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~-- 1336 (1374)
|||||++| ||||+++|+++||||||++||.++.+.+.+.+++
T Consensus 130 G~~qrv~l------------------------------------aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 173 (205)
T cd03226 130 GQKQRLAI------------------------------------AAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA 173 (205)
T ss_pred HHHHHHHH------------------------------------HHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999887776543
Q ss_pred -cCceEEEecCCCCchh-hccceEEEEcC
Q 000647 1337 -MGITFVTSSQRPALIP-FHSLELRLIDG 1363 (1374)
Q Consensus 1337 -~~~TvI~IaHRl~~i~-~~~~~l~l~~g 1363 (1374)
.|+|+|+++|+++.+. +.|+++.|.+|
T Consensus 174 ~~~~tii~~sH~~~~~~~~~d~i~~l~~G 202 (205)
T cd03226 174 AQGKAVIVITHDYEFLAKVCDRVLLLANG 202 (205)
T ss_pred HCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 4899999999997764 78999999655
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=324.37 Aligned_cols=195 Identities=18% Similarity=0.223 Sum_probs=163.2
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-------cccccEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~-------~~~~~i~ 516 (1374)
.++++|+++.|+ ++++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 689999999986 46799999999999999999999999999999999999999999999998641 1346799
Q ss_pred EEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHc-CChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV-DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 517 ~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
|+||++.++. .|++||+.++..... ....++++.++++.+ ++.+..++.+ ..||||||||++||||++
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~ 153 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAE--RDQFQERIKWVYELFPRLHERRIQRA--------GTMSGGEQQMLAIGRALM 153 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccC--hhHHHHHHHHHHHHHHHHHHHHhCch--------hhCCHHHHHHHHHHHHHH
Confidence 9999998887 499999987532111 011233456667776 4666555544 689999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
++|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ +.+|+++++++
T Consensus 154 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLEN 212 (237)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeC
Confidence 99999999999999999999999887753 489999999999865 67999999985
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=338.00 Aligned_cols=199 Identities=25% Similarity=0.336 Sum_probs=166.0
Q ss_pred CcEEEeeeEEEcCC---------CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----
Q 000647 443 NYIEFSGVKVVTPT---------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~---------~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~---- 509 (1374)
..|+++|+++.|+. ...+++|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 46899999998863 24799999999999999999999999999999999999999999999998641
Q ss_pred -----cccccEEEEecCCC--CCc-CCHHHHhcCCCCCC-cccCCCCHHHHHHHHHHcCCh-hHHhcCCCCccccCCCCC
Q 000647 510 -----DLNKEIFYVPQRPY--TAV-GTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDEL 579 (1374)
Q Consensus 510 -----~~~~~i~~v~Q~p~--l~~-~Tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~~~~~g~~L 579 (1374)
.++++|+||||+|. +.. .|+.+|+.++.... ........+++.++++.++|. +..++.| .+|
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p--------~~L 155 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYP--------HMF 155 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCC--------ccC
Confidence 24568999999994 433 59999886542111 001112235678899999996 4667766 689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 580 SgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||||||++|||||+.+|++||+||||++||..+...+++.+++ .|.|+|+||||++.+. .+|++++|.+
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~ 230 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYL 230 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999887754 4899999999999986 6999999975
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=315.70 Aligned_cols=187 Identities=23% Similarity=0.327 Sum_probs=161.9
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----ccccccEEEEe
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~~~~~~i~~v~ 519 (1374)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+|
T Consensus 2 l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 2 LDVIELDFDYH-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEEEeC-CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 78999999986 4679999999999999999999999999999999999999999999999864 12456899999
Q ss_pred cCCCCC-cCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000647 520 QRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 520 Q~p~l~-~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
|++.++ ..|++||+.++.... ..+.++.++++.+++.+..++.+ .+||||||||++||||++++|+
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFS-----PGAVGITELCRLFSLEHLIDYPC--------GLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcC-----cchHHHHHHHHHcCCchhhhCCh--------hhcCHHHHHHHHHHHHHhcCCC
Confidence 999886 579999998763211 12346788999999987666543 5799999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHhhccEEE
Q 000647 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVL 645 (1374)
Q Consensus 599 illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~~~d~il 645 (1374)
++||||||++||+.+.+.+.+.+++ .|.|+|++||+...+..+|...
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 9999999999999999999988764 4899999999999998888654
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=338.96 Aligned_cols=185 Identities=25% Similarity=0.278 Sum_probs=157.7
Q ss_pred CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----ccccccEEEEecCCCCCcC-CHH
Q 000647 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVPQRPYTAVG-TLR 530 (1374)
Q Consensus 457 ~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~~~~~~i~~v~Q~p~l~~~-Tv~ 530 (1374)
++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..++++++|+||++.++.. |++
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 4679999999999999999999999999999999999999999999999864 1245679999999988765 999
Q ss_pred HHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 000647 531 DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610 (1374)
Q Consensus 531 eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD 610 (1374)
||+.+............++++.++++.++|.+..++.+ .+||||||||++|||||+++|+++||||||++||
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 156 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPV--------GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD 156 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 99987422111101112346788999999988777755 6899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 611 TDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 611 ~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+.+.+.+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 157 ~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~ 199 (302)
T TIGR01188 157 PRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDH 199 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 9999999887764 4899999999999885 6999999975
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=308.22 Aligned_cols=160 Identities=34% Similarity=0.590 Sum_probs=145.9
Q ss_pred EEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEE
Q 000647 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1374)
Q Consensus 445 i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~ 517 (1374)
++++|+++.|+++ +++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ..+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4689999999753 569999999999999999999999999999999999999999999999854 124578999
Q ss_pred EecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000647 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1374)
Q Consensus 518 v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1374)
++|+|.++..|++||+ ||||||||++||||++++|
T Consensus 81 ~~q~~~~~~~tv~~~l---------------------------------------------LS~G~~qrv~la~al~~~p 115 (173)
T cd03246 81 LPQDDELFSGSIAENI---------------------------------------------LSGGQRQRLGLARALYGNP 115 (173)
T ss_pred ECCCCccccCcHHHHC---------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 9999988888999886 8999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHhhccEEEEecC
Q 000647 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 598 ~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+..+|+++++++
T Consensus 116 ~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~ 170 (173)
T cd03246 116 RILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLED 170 (173)
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999887754 47899999999999989999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=309.65 Aligned_cols=163 Identities=29% Similarity=0.438 Sum_probs=148.1
Q ss_pred EEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----ccccccEEEE
Q 000647 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1374)
Q Consensus 445 i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~~~~~~i~~v 518 (1374)
++++|+++.|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4689999998754 479999999999999999999999999999999999999999999999864 1245679999
Q ss_pred ecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000647 519 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 519 ~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
||+|.++..|++||+ + ..||||||||++||||++++|+
T Consensus 81 ~q~~~~~~~tv~~~i----------------------------------~--------~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 81 NQRPYLFDTTLRNNL----------------------------------G--------RRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred ccCCeeecccHHHhh----------------------------------c--------ccCCHHHHHHHHHHHHHhcCCC
Confidence 999998888999987 2 4799999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 599 FAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 599 illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
++||||||++||+.+.+.+++.+++ .+.|+|++||+++.+..+|+++++++
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~ 171 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLEN 171 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 9999999999999999999988865 47899999999999999999999975
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=320.50 Aligned_cols=192 Identities=28% Similarity=0.298 Sum_probs=165.7
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc--cccccEEEEecCC
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--DLNKEIFYVPQRP 522 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~--~~~~~i~~v~Q~p 522 (1374)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .-.+.++|+||++
T Consensus 1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 46899999886 46799999999999999999999999999999999999999999999998641 1125799999999
Q ss_pred CCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000647 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1374)
Q Consensus 523 ~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ill 601 (1374)
.++. .|++||+.++.... ...+.++.++++.+++++..++.+ .+||||||||++||||++.+|++++
T Consensus 80 ~~~~~~t~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~~rv~laral~~~p~lll 147 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLL----GLPDSRIDEVLNIVDLTNTGKKKA--------KQFSLGMKQRLGIAIALLNHPKLLI 147 (223)
T ss_pred CccccCCHHHHHHHHHHHc----CCCHHHHHHHHHHcCCcHHHhhhH--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8776 69999997643211 123457788999999998877755 5899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 602 LDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 602 LDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|||||++||+.+.+.+.+.+++ .|.|+|++||+++.+ ..+|+++++++
T Consensus 148 lDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 199 (223)
T TIGR03740 148 LDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISE 199 (223)
T ss_pred ECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeC
Confidence 9999999999999999888764 478999999999987 57999999975
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=341.23 Aligned_cols=186 Identities=27% Similarity=0.330 Sum_probs=158.8
Q ss_pred CCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCC----C------cc---c-cccEEEEecC
Q 000647 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV----G------SD---L-NKEIFYVPQR 521 (1374)
Q Consensus 456 ~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~----~------~~---~-~~~i~~v~Q~ 521 (1374)
+...+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. + .. . +++|+||||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~ 114 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence 3457899999999999999999999999999999999999999999999984 2 01 1 2579999999
Q ss_pred CCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000647 522 PYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1374)
Q Consensus 522 p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~il 600 (1374)
+.+++ .|++||+.|+............+++.++++.++|.++.++.| .+||||||||++|||||+++|+++
T Consensus 115 ~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~--------~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 115 FALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP--------GELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99887 699999998743211111112346788999999998888876 589999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 601 ILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 601 lLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|||||||+||+.+...+++.+.+ .++|+|+|||+++.+ +.+|+|++|++
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~ 240 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEG 240 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999887753 389999999999986 67999999986
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=320.95 Aligned_cols=204 Identities=18% Similarity=0.278 Sum_probs=171.0
Q ss_pred EEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc------CCcccE
Q 000647 1101 SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------GSGCGI 1174 (1374)
Q Consensus 1101 ~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~------~~r~~i 1174 (1374)
...|+.|.||..+++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++...+ ..|..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 46788999987788999999999999999999999999999999999999999999999998876532 235679
Q ss_pred EEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccc-cc
Q 000647 1175 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WE 1253 (1374)
Q Consensus 1175 ~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~-~g 1253 (1374)
+|+||+|.+|+.|++||+.++.... +++.+++++.+++.+.++..|.|+++..+ ..
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~~~-----------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 138 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSPFN-----------------------KQRYKAVTDACSLQPDIDLLPFGDQTEIGERG 138 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCcCC-----------------------HHHHHHHHHHhCcHHHHHhCcCccccCcccCC
Confidence 9999999999999999998753211 12234556667777777777888887653 46
Q ss_pred cCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHH-
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYR- 1332 (1374)
Q Consensus 1254 ~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~- 1332 (1374)
..||+|||||++| |||++++|+++||||||++||.++.+.+.+
T Consensus 139 ~~LS~G~~qrv~l------------------------------------aral~~~p~illlDEPt~~LD~~~~~~l~~~ 182 (218)
T cd03290 139 INLSGGQRQRICV------------------------------------ARALYQNTNIVFLDDPFSALDIHLSDHLMQE 182 (218)
T ss_pred CcCCHHHHHHHHH------------------------------------HHHHhhCCCEEEEeCCccccCHHHHHHHHHH
Confidence 7899999999999 999999999999999999999998876554
Q ss_pred -H---HHhcCceEEEecCCCCchhhccceEEEEcC
Q 000647 1333 -L---AKDMGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1333 -~---~~~~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
+ .++.|.|+|.++|+++.+...++.+.+.+|
T Consensus 183 ~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G 217 (218)
T cd03290 183 GILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217 (218)
T ss_pred HHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCC
Confidence 2 234589999999999888999988888544
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=322.05 Aligned_cols=198 Identities=25% Similarity=0.372 Sum_probs=164.7
Q ss_pred cEEEeeeEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc---CCccEEEeCCCC---cccccc
Q 000647 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG---SDLNKE 514 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~---~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~---~~~G~I~~~g~~---~~~~~~ 514 (1374)
.+.++||++.||+. +++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ ...++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 36799999999864 689999999999999999999999999999999999999 999999999864 234678
Q ss_pred EEEEecCCCCCcC-CHHHHhcCCCCCC--c-ccCCCCHHHHHH-HHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHH
Q 000647 515 IFYVPQRPYTAVG-TLRDQLIYPLTSD--Q-EVEPLTHGGMVE-LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1374)
Q Consensus 515 i~~v~Q~p~l~~~-Tv~eni~~~~~~~--~-~~~~~~~~~~~~-~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1374)
++|+||++.++.+ |++||+.++.... . ........++.+ .++.+++.+..++.+ ..||||||||++|
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~l 154 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV--------KGISGGERRRVSI 154 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc--------cCcCHHHHHHHHH
Confidence 9999999998876 9999998753211 0 001111123444 788888877666544 6899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccCh--hhHhhccEEEEecC
Q 000647 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRP--ALVAFHDVVLSLDG 649 (1374)
Q Consensus 590 ARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~--~~~~~~d~il~l~~ 649 (1374)
|||++++|+++||||||++||+.+...+.+.+++ .+.|+|++||++ +....+|+++++++
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~ 219 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS 219 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999888764 478999999997 45678999999985
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=317.92 Aligned_cols=195 Identities=23% Similarity=0.302 Sum_probs=165.9
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC---ccccccEEEEe
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---SDLNKEIFYVP 519 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~---~~~~~~i~~v~ 519 (1374)
..++++|+++.|+ ++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|++
T Consensus 10 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~ 88 (214)
T PRK13543 10 PLLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLG 88 (214)
T ss_pred ceEEEeeEEEecC-CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEee
Confidence 4699999999985 4579999999999999999999999999999999999999999999999864 12345699999
Q ss_pred cCCCCCcC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000647 520 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 520 Q~p~l~~~-Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
|+|.++.. |++||+.++..... ...++.+.++++.+++.+..++.+ ..||||||||++|||+++++|+
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~ 157 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCGLHG---RRAKQMPGSALAIVGLAGYEDTLV--------RQLSAGQKKRLALARLWLSPAP 157 (214)
T ss_pred cCcccccCCcHHHHHHHHHHhcC---CcHHHHHHHHHHHcCChhhccCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99988875 99999976432111 112345678899999987766654 5899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 599 illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
++||||||++||+++.+.+.+.+++ .|.|+|++||+++.+ ..+|+++.++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 158 LWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999887754 489999999999987 57899998863
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=323.80 Aligned_cols=196 Identities=23% Similarity=0.356 Sum_probs=166.8
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----cccccEEEEec
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 520 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----~~~~~i~~v~Q 520 (1374)
|+++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|.+|+|.++|.+. ..++.++|+||
T Consensus 1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 468999999864 6799999999999999999999999999999999999999999999998641 13468999999
Q ss_pred CCCCCcC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000647 521 RPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1374)
Q Consensus 521 ~p~l~~~-Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1374)
+|.++.+ |++||+.++...........++++.++++.++++++.++.+ ..||||||||++||||++++|++
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP--------SQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 9998865 99999986432111001112446778899999998888776 58999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 600 llLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+||||||++||+.+.+.+++.+++ .|+|+|++||+++.+ ..+|+++++++
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~ 206 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNK 206 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 999999999999999999887754 389999999999987 46999999975
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=321.94 Aligned_cols=202 Identities=23% Similarity=0.262 Sum_probs=163.9
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc-----CCcccE
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCGI 1174 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~-----~~r~~i 1174 (1374)
|+++||++.|++.+.+++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++...+ ..|+++
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999976567999999999999999999999999999999999999999999999999886542 245679
Q ss_pred EEecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccc
Q 000647 1175 FYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1374)
Q Consensus 1175 ~~VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g 1253 (1374)
++|||+|.+|.+ |++||+.++.... +. ..+..++.+.++++.+++.....+. .
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~ 134 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVT----------GV------PPREIRKRVPAALELVGLSHKHRAL----------P 134 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHc----------CC------CHHHHHHHHHHHHHHcCCHHHhhCC----------h
Confidence 999999999985 9999997652100 00 0000123456778877775544332 2
Q ss_pred cCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHH
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL 1333 (1374)
Q Consensus 1254 ~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~ 1333 (1374)
..||+|||||++| |||++++|+++||||||++||.++.+.+.+.
T Consensus 135 ~~LS~G~~qrv~l------------------------------------aral~~~p~llllDEPt~~LD~~~~~~~~~~ 178 (214)
T cd03292 135 AELSGGEQQRVAI------------------------------------ARAIVNSPTILIADEPTGNLDPDTTWEIMNL 178 (214)
T ss_pred hhcCHHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 4699999999999 9999999999999999999999999887776
Q ss_pred HHh---cCceEEEecCCCCchh-hccceEEEEcC
Q 000647 1334 AKD---MGITFVTSSQRPALIP-FHSLELRLIDG 1363 (1374)
Q Consensus 1334 ~~~---~~~TvI~IaHRl~~i~-~~~~~l~l~~g 1363 (1374)
+++ .|+|+|+|+|++..+. +.|+++.|.+|
T Consensus 179 l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G 212 (214)
T cd03292 179 LKKINKAGTTVVVATHAKELVDTTRHRVIALERG 212 (214)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 543 4899999999997775 57888998654
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=316.43 Aligned_cols=175 Identities=26% Similarity=0.318 Sum_probs=146.6
Q ss_pred CCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc--------cccccEEEEecCC--CC
Q 000647 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEIFYVPQRP--YT 524 (1374)
Q Consensus 455 ~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~--------~~~~~i~~v~Q~p--~l 524 (1374)
++++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++|+||+| .+
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3456799999999999999999999999999999999999999999999998541 2346799999998 46
Q ss_pred CcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000647 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1374)
Q Consensus 525 ~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDE 604 (1374)
+..|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+++|+++||||
T Consensus 82 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT--------HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 67899999987532111000112345778899999998887766 6899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhh
Q 000647 605 CTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL 637 (1374)
Q Consensus 605 ptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~ 637 (1374)
||++||+.+.+.+.+.+++ .|+|+|++||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9999999999999888764 48999999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=320.79 Aligned_cols=201 Identities=25% Similarity=0.314 Sum_probs=163.4
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecC
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ 1179 (1374)
|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++......+++++||||
T Consensus 1 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYGS-VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeCC-eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 478999999865 6799999999999999999999999999999999999999999999999988765444568999999
Q ss_pred CCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCCh
Q 000647 1180 RPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1374)
Q Consensus 1180 ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSg 1258 (1374)
+|.+|. .|++||+.++.... +. .....++.+.++++.+++.+...+. ...|||
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LSg 133 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLR----------GV------PKAEIRARVRELLELVGLEGLLNRY----------PHELSG 133 (213)
T ss_pred chhhccCCcHHHHHHhHHHHc----------CC------CHHHHHHHHHHHHHHcCChhhhhcC----------hhhCCH
Confidence 999886 59999997542100 00 0000123456677877776544332 356999
Q ss_pred hhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--
Q 000647 1259 GEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD-- 1336 (1374)
Q Consensus 1259 GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~-- 1336 (1374)
|||||++| ||||+++|+++||||||++||.++.+.+.+.+++
T Consensus 134 G~~qrl~l------------------------------------a~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 177 (213)
T cd03259 134 GQQQRVAL------------------------------------ARALAREPSLLLLDEPLSALDAKLREELREELKELQ 177 (213)
T ss_pred HHHHHHHH------------------------------------HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999887776543
Q ss_pred --cCceEEEecCCCCc-hhhccceEEEEcC
Q 000647 1337 --MGITFVTSSQRPAL-IPFHSLELRLIDG 1363 (1374)
Q Consensus 1337 --~~~TvI~IaHRl~~-i~~~~~~l~l~~g 1363 (1374)
.|+|+|+|+|+++. .++.|+++.|.+|
T Consensus 178 ~~~~~tii~~sH~~~~~~~~~d~v~~l~~G 207 (213)
T cd03259 178 RELGITTIYVTHDQEEALALADRIAVMNEG 207 (213)
T ss_pred HHcCCEEEEEecCHHHHHHhcCEEEEEECC
Confidence 48999999999975 4678999999655
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=325.94 Aligned_cols=197 Identities=25% Similarity=0.291 Sum_probs=163.8
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc-----CCccEEEeCCCCc--------c
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS--------D 510 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~-----~~~G~I~~~g~~~--------~ 510 (1374)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEEC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 589999999986 4679999999999999999999999999999999999997 4799999998641 2
Q ss_pred ccccEEEEecCCCCCcCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCh----hHHhcCCCCccccCCCCCChhHHH
Q 000647 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQQ 585 (1374)
Q Consensus 511 ~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~~~~~~g~~LSgGqkQ 585 (1374)
+++.++|++|+|.++..|++||+.++....... ....+.++.++++.+++. +..++. ..+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~Gq~q 154 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRN--------AQAFSGGQQQ 154 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccC--------hhhCCHHHHH
Confidence 356799999999998899999998753211110 011234567788888884 223332 2689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 586 RlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|++||||++++|+++||||||++||+.+.+.+.+.+++ .+.|+|+|||+++.+. .+|++++|++
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~ 221 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMN 221 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEEC
Confidence 99999999999999999999999999999999988865 3789999999999865 6999999975
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=328.70 Aligned_cols=199 Identities=25% Similarity=0.352 Sum_probs=163.4
Q ss_pred CcEEEeeeEEEcCC--------CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-----
Q 000647 443 NYIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~--------~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----- 509 (1374)
..|+++||++.|++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 36899999998852 24799999999999999999999999999999999999999999999998541
Q ss_pred -cccccEEEEecCCC--CCc-CCHHHHhcCCCCCCc-ccCCCCHHHHHHHHHHcCCh-hHHhcCCCCccccCCCCCChhH
Q 000647 510 -DLNKEIFYVPQRPY--TAV-GTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGE 583 (1374)
Q Consensus 510 -~~~~~i~~v~Q~p~--l~~-~Tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~~~~~g~~LSgGq 583 (1374)
..++.++|+||+|. ++. .|+.+|+.++..... .......+++.++++.+++. +..++.+ .+|||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~ 154 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYP--------HMLAPGQ 154 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCc--------hhcCHHH
Confidence 12357999999984 333 489999876422110 00111234677899999994 5555544 5899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 584 kQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||++||||++++|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+. .+|+++++++
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~ 225 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQ 225 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999999887764 3889999999999987 5999999975
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=327.02 Aligned_cols=197 Identities=26% Similarity=0.335 Sum_probs=163.5
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC--ccc-cccEEEEec
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--SDL-NKEIFYVPQ 520 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~--~~~-~~~i~~v~Q 520 (1374)
.++++|+++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ... ++.++|+||
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 58999999999766789999999999999999999999999999999999999999999999864 112 246999999
Q ss_pred CCCC---CcCCHHHHhcCCCCCC----cccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000647 521 RPYT---AVGTLRDQLIYPLTSD----QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 521 ~p~l---~~~Tv~eni~~~~~~~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1374)
+|.+ +..++++|+.++.... ........+++.++++.+++.+..++.+ .+||||||||++|||||
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgG~~qrv~laraL 157 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI--------GELSGGQKKRVFLARAI 157 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc--------ccCCHHHHHHHHHHHHH
Confidence 9865 3457899987642110 0000112345678899999988777655 58999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhH-hhccEEEEec
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLD 648 (1374)
Q Consensus 594 ~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~-~~~d~il~l~ 648 (1374)
+++|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..+|+++.++
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~~ 216 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVK 216 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEC
Confidence 999999999999999999999999888754 489999999999876 5789997773
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=320.73 Aligned_cols=202 Identities=24% Similarity=0.323 Sum_probs=164.7
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc-----CCcccE
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCGI 1174 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~-----~~r~~i 1174 (1374)
|+++|+++.|+.++.+|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..++++
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 789999999965568999999999999999999999999999999999999999999999999887642 245689
Q ss_pred EEecCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccc
Q 000647 1175 FYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1374)
Q Consensus 1175 ~~VpQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g 1253 (1374)
+|+||+|.+|. .|+++|+.++... .+. .....++.++++++.+++.+...+. .
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~ 135 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEV----------RGK------KEREIQRRVGAALRQVGLEHKADAF----------P 135 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHH----------cCC------CHHHHHHHHHHHHHHcCChhhhhCC----------h
Confidence 99999999986 6999999754210 000 0001133466788888875544332 2
Q ss_pred cCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHH
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL 1333 (1374)
Q Consensus 1254 ~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~ 1333 (1374)
..||||||||++| ||||+++|+++||||||++||.++.+.+.+.
T Consensus 136 ~~LS~G~~qrl~l------------------------------------a~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 179 (214)
T TIGR02673 136 EQLSGGEQQRVAI------------------------------------ARAIVNSPPLLLADEPTGNLDPDLSERILDL 179 (214)
T ss_pred hhCCHHHHHHHHH------------------------------------HHHHhCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 4699999999999 9999999999999999999999999888776
Q ss_pred HHh---cCceEEEecCCCCchh-hccceEEEEcC
Q 000647 1334 AKD---MGITFVTSSQRPALIP-FHSLELRLIDG 1363 (1374)
Q Consensus 1334 ~~~---~~~TvI~IaHRl~~i~-~~~~~l~l~~g 1363 (1374)
+++ .|+|+|+|+|++..+. +.|+++.+.+|
T Consensus 180 l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 180 LKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence 653 4899999999997665 67899988654
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=321.38 Aligned_cols=185 Identities=31% Similarity=0.422 Sum_probs=162.4
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCccccccEEEEecCCC
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~~~~~~i~~v~Q~p~ 523 (1374)
.++++|+++.|+ ++++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +..++|+||+|.
T Consensus 4 ~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----~~~i~~v~q~~~ 77 (251)
T PRK09544 4 LVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----KLRIGYVPQKLY 77 (251)
T ss_pred EEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----ccCEEEeccccc
Confidence 689999999986 46799999999999999999999999999999999999999999999986 247999999997
Q ss_pred CCc---CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEE
Q 000647 524 TAV---GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1374)
Q Consensus 524 l~~---~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~il 600 (1374)
++. .|+++++.+.. ...++++.++++.+++.+..++.+ ..||||||||++||||++++|+++
T Consensus 78 ~~~~l~~~~~~~~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGq~qrv~laral~~~p~ll 142 (251)
T PRK09544 78 LDTTLPLTVNRFLRLRP-------GTKKEDILPALKRVQAGHLIDAPM--------QKLSGGETQRVLLARALLNRPQLL 142 (251)
T ss_pred cccccChhHHHHHhccc-------cccHHHHHHHHHHcCChHHHhCCh--------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 754 38888875421 123456788999999998888765 689999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHh---c-CCEEEEEccChhhH-hhccEEEEecC
Q 000647 601 ILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 601 lLDEptsaLD~~~~~~i~~~l~~---~-~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
||||||++||+.+...+++.+++ . |+|+|++||+++.+ ..+|+++++++
T Consensus 143 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~ 196 (251)
T PRK09544 143 VLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH 196 (251)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC
Confidence 99999999999999999887753 2 89999999999987 57999999964
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=327.45 Aligned_cols=199 Identities=22% Similarity=0.243 Sum_probs=165.9
Q ss_pred CCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc-----CCccEEEeCCCCc-------
Q 000647 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 509 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~-----~~~G~I~~~g~~~------- 509 (1374)
...++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 18 ~~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 18 EIALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CeEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 45799999999985 5789999999999999999999999999999999999996 5899999998541
Q ss_pred -cccccEEEEecCCCCCcCCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCChhH----HhcCCCCccccCCCCCChhH
Q 000647 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGE 583 (1374)
Q Consensus 510 -~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~----~~~~~~~~~~~~g~~LSgGq 583 (1374)
..++.++|+||+|.++..|++||+.++...... .....++++.++++.+++.+. .++. ..+|||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--------~~~LS~G~ 168 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKS--------ALTLSGGQ 168 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCC--------cccCCHHH
Confidence 235679999999998889999999876322111 011123456778899988543 3332 26899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 584 kQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|||++||||++++|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+ ..||++++|++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 237 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYL 237 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999999888765 368999999999887 57999999975
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=327.54 Aligned_cols=198 Identities=23% Similarity=0.265 Sum_probs=163.9
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc-----CCccEEEeCCCCc--------
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS-------- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~-----~~~G~I~~~g~~~-------- 509 (1374)
..++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 20 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 20 HILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred ceEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 4699999999996 4679999999999999999999999999999999999864 7899999998541
Q ss_pred cccccEEEEecCCCCCcCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCh----hHHhcCCCCccccCCCCCChhHH
Q 000647 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQ 584 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~~~~~~g~~LSgGqk 584 (1374)
.+++.++|+||+|.++.+|++||+.++....... ....++.+.++++.+++. +..++.+ .+||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgGq~ 170 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSA--------LSLSGGQQ 170 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCc--------ccCCHHHH
Confidence 2356799999999998899999998753211110 011234566788888874 3334433 68999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 585 QRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
||++|||||+++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+ ..+|++++|++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~ 238 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLN 238 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999988865 368999999999876 57999999975
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=336.92 Aligned_cols=202 Identities=19% Similarity=0.212 Sum_probs=164.7
Q ss_pred CCEEEeeeEEeCCCc----ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc------
Q 000647 1098 DSISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE------ 1167 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~~----~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~------ 1167 (1374)
..|+++||++.|+.. +++|+|+||+|++||.+||+|+||||||||+++|.|+++|.+|+|.++|.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 358999999999752 4799999999999999999999999999999999999999999999999887542
Q ss_pred ------------cCCcccEEEecCCC--CCCCcchHHHhccCCC---hhHHHHHHHhhccCCCcccccCCCChHHHHHHH
Q 000647 1168 ------------AGSGCGIFYVPQRP--YTCLGTLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDSYLKTIL 1230 (1374)
Q Consensus 1168 ------------~~~r~~i~~VpQ~P--~Lf~GTlR~Nl~yp~~---~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L 1230 (1374)
..+|++|+||||+| .+|++|++|||.++.. .++++ ......+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~-------------------~~~~~~~~l 160 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSE-------------------AKKLAKFYL 160 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHH-------------------HHHHHHHHH
Confidence 23467899999999 7899999999987531 11110 012244566
Q ss_pred HhCCCc-hhhhhhccCCccccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCccccccccccc
Q 000647 1231 EGVRLS-YLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHK 1309 (1374)
Q Consensus 1231 ~~v~L~-~~v~~~~~Gldt~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~ 1309 (1374)
+.++|. .+..+ ...+||||||||++| ||||+++
T Consensus 161 ~~~gL~~~~~~~----------~~~~LSgGqkqRvai------------------------------------AraL~~~ 194 (320)
T PRK13631 161 NKMGLDDSYLER----------SPFGLSGGQKRRVAI------------------------------------AGILAIQ 194 (320)
T ss_pred HHcCCChhHhcC----------CcccCCHHHHHHHHH------------------------------------HHHHHcC
Confidence 777664 22222 346799999999999 9999999
Q ss_pred CcEEEeeccCCCCCHHHHHHHHHHHH---hcCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1310 PKFGILDECTNATSVDVEEQLYRLAK---DMGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1310 PkillLDEaTSaLD~~~e~~l~~~~~---~~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
|++||||||||+||..+++.+.++++ ..|+|+|+|+|+++.+ .+.|+++.|.+|+
T Consensus 195 p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 195 PEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999988877654 2589999999999865 7899999996654
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=325.04 Aligned_cols=197 Identities=24% Similarity=0.305 Sum_probs=160.7
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCC--cCCccEEEeCCCCc------c-ccccE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVGS------D-LNKEI 515 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~--~~~~G~I~~~g~~~------~-~~~~i 515 (1374)
|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|.+. . .+..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 46899999996 467999999999999999999999999999999999994 79999999998641 1 23459
Q ss_pred EEEecCCCCCcC-CHHHHhcCCCCCCcc-------cCCCCHHHHHHHHHHcCChh-HHhcCCCCccccCCCCCChhHHHH
Q 000647 516 FYVPQRPYTAVG-TLRDQLIYPLTSDQE-------VEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQR 586 (1374)
Q Consensus 516 ~~v~Q~p~l~~~-Tv~eni~~~~~~~~~-------~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~~~~~g~~LSgGqkQR 586 (1374)
+|+||+|.++.+ |++||+.+....... ......+++.++++.+++.+ ..++.+ ...||||||||
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-------~~~LS~G~~qr 152 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSV-------NEGFSGGEKKR 152 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhccccc-------ccCcCHHHHHH
Confidence 999999988765 899999764221000 00011345778899999963 445433 12599999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHhh--ccEEEEecC
Q 000647 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF--HDVVLSLDG 649 (1374)
Q Consensus 587 lalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~~--~d~il~l~~ 649 (1374)
++|||||+++|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+.. +|++++|++
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~ 220 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLD 220 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeC
Confidence 9999999999999999999999999999999988764 47899999999999874 799999975
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=314.52 Aligned_cols=191 Identities=28% Similarity=0.361 Sum_probs=164.1
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc---cccccEEEEec
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---DLNKEIFYVPQ 520 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~---~~~~~i~~v~Q 520 (1374)
.++++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|++|
T Consensus 2 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRGG-RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEECC-eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 4789999999864 6799999999999999999999999999999999999999999999998641 14567999999
Q ss_pred CCCCC-cCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000647 521 RPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1374)
Q Consensus 521 ~p~l~-~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1374)
++.++ ..|++||+.+..... ...+.++.++++.+++.++.++.+ .+||||||||++||||++++|++
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFL----GGEELDIAAALEAVGLAPLAHLPF--------GYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhc----CCcHHHHHHHHHHcCCHHHHcCCh--------hhcCHHHHHHHHHHHHHhcCCCE
Confidence 88765 579999997643211 123456888999999988766544 58999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHhhccEEEEec
Q 000647 600 AILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLD 648 (1374)
Q Consensus 600 llLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~~~d~il~l~ 648 (1374)
+||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+.. |+++.++
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~ 199 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLG 199 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeec
Confidence 999999999999999999888764 48999999999999887 9988875
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=325.74 Aligned_cols=197 Identities=26% Similarity=0.305 Sum_probs=162.8
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCCc--------c
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS--------D 510 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~~--------~ 510 (1374)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. .
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYG-SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeC-CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 589999999986 46799999999999999999999999999999999999987 499999998541 2
Q ss_pred ccccEEEEecCCCCCcC-CHHHHhcCCCCCCcc--cCCCCHHHHHHHHHHcCChhH----HhcCCCCccccCCCCCChhH
Q 000647 511 LNKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGE 583 (1374)
Q Consensus 511 ~~~~i~~v~Q~p~l~~~-Tv~eni~~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~----~~~~~~~~~~~~g~~LSgGq 583 (1374)
++++++|+||+|.++.. |+.||+.++...... .....++++.++++.+++... .++. ..+|||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~ 154 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDY--------PSNLSGGQ 154 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccC--------hhhCCHHH
Confidence 35679999999988865 999999875321110 001123456788888887532 2332 26899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 584 kQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||++||||++++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|+++++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 223 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYL 223 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEEC
Confidence 9999999999999999999999999999999999988765 3689999999999865 6999999975
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=324.03 Aligned_cols=197 Identities=22% Similarity=0.274 Sum_probs=163.0
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCC---CcC--CccEEEeCCCCc--------c
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL---WPL--VSGHIAKPGVGS--------D 510 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl---~~~--~~G~I~~~g~~~--------~ 510 (1374)
.++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+ .+| ++|+|.++|.+. .
T Consensus 3 ~l~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 3 KIDARDVNFWYGD-FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred EEEEEEEEEEECC-EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 6899999999864 6799999999999999999999999999999999997 455 589999998641 2
Q ss_pred ccccEEEEecCCCCCcCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCChhH----HhcCCCCccccCCCCCChhHHH
Q 000647 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 585 (1374)
Q Consensus 511 ~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~----~~~~~~~~~~~~g~~LSgGqkQ 585 (1374)
.++.++|+||+|.++..|++||+.++....... ....++++.++++.+++.+. .++. ..+|||||||
T Consensus 82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~q 153 (250)
T PRK14245 82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKES--------AFALSGGQQQ 153 (250)
T ss_pred HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCC--------cccCCHHHHH
Confidence 346799999999988889999998753211100 01123456788898988643 3332 2689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 586 RlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|++||||++.+|+++||||||++||+.+.+.+.+.+++ .++|+|+|||+++.+ ..+|+++++++
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~ 220 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYM 220 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 99999999999999999999999999999999988865 478999999999987 57999999975
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=323.83 Aligned_cols=198 Identities=21% Similarity=0.204 Sum_probs=164.2
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCCc--------
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~~-------- 509 (1374)
..++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 3 IKMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred cEEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 3689999999986 46799999999999999999999999999999999999875 799999998541
Q ss_pred cccccEEEEecCCCCCcCCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCChh----HHhcCCCCccccCCCCCChhHH
Q 000647 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~----~~~~~~~~~~~~~g~~LSgGqk 584 (1374)
..++.++|+||++.++..|++||+.++...... ......+++.++++.+++.+ ..++.+ ..||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~ 153 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSA--------LKLSGGQQ 153 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCc--------ccCCHHHH
Confidence 235679999999998889999999875321111 00112345667889988753 233333 68999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 585 QRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||++||||++++|+++||||||++||+.+...+.+.+++ .+.|+|+|||+++.+. .+|+++++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~ 221 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLM 221 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999999988865 3689999999999875 6999999976
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=324.80 Aligned_cols=197 Identities=19% Similarity=0.250 Sum_probs=166.8
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCC---ccEEEeCCCCc-----------
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVGS----------- 509 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~---~G~I~~~g~~~----------- 509 (1374)
.|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 4 ~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 689999999985 568999999999999999999999999999999999999986 49999998541
Q ss_pred cccccEEEEecCCCCCc-CCHHHHhcCCCCCCc--------ccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCC
Q 000647 510 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQ--------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELS 580 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p~l~~-~Tv~eni~~~~~~~~--------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LS 580 (1374)
.+++.++|+||++.++. .|++||+.++..... ........++.++++.+++.+..++.+ .+||
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS 154 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV--------STLS 154 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc--------cccC
Confidence 12457999999998876 599999987632110 001112346788999999988877765 5899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 581 LGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 581 gGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
||||||++||||++.+|+++||||||++||..+.+.+.+.+++ .|+|+|++||+++.+ ..+|+++++++
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~ 228 (262)
T PRK09984 155 GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQ 228 (262)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999888764 379999999999975 67999999975
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=323.63 Aligned_cols=197 Identities=23% Similarity=0.271 Sum_probs=162.8
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc--C---CccEEEeCCCCc--------c
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVGS--------D 510 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~--~---~~G~I~~~g~~~--------~ 510 (1374)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.+. .
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 5 ILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred eEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 689999999986 4679999999999999999999999999999999999953 6 599999998531 2
Q ss_pred ccccEEEEecCCCCCcCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCChh----HHhcCCCCccccCCCCCChhHHH
Q 000647 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQQ 585 (1374)
Q Consensus 511 ~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~----~~~~~~~~~~~~~g~~LSgGqkQ 585 (1374)
+++.++|+||+|.++..|++||+.++....... ....++++.++++.+++.+ ..++.+ .+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~q 155 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSA--------LGLSGGQQQ 155 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCc--------ccCCHHHHH
Confidence 356799999999998899999998753211110 1112345667888888753 233333 689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 586 RlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|++||||++++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+ ..+|+++++++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLD 222 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999988865 368999999999876 57999999986
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=323.39 Aligned_cols=207 Identities=22% Similarity=0.310 Sum_probs=174.2
Q ss_pred EEEeeeEEeCCCc-ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEE
Q 000647 1100 ISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFY 1176 (1374)
Q Consensus 1100 I~f~~V~~~yp~~-~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~ 1176 (1374)
|+++|+++.|++. +++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ...++++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5789999998764 4799999999999999999999999999999999999999999999999887654 234667999
Q ss_pred ecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccc-cccC
Q 000647 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WEDI 1255 (1374)
Q Consensus 1177 VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~-~g~~ 1255 (1374)
+||+|.+|.+|++||+.++... ....++.+.++.+++.+.++.+|.|+++..+ +...
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 138 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPG----------------------ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVK 138 (234)
T ss_pred eCCCCeeccccHHHHhhccCCC----------------------CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCc
Confidence 9999999999999999865321 0112233445556677777777778877653 5678
Q ss_pred CChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH
Q 000647 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1335 (1374)
Q Consensus 1256 LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~ 1335 (1374)
||+|||||++| ||||+++|+++||||||++||.++.+.+.+.++
T Consensus 139 LS~G~~qrv~l------------------------------------a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~ 182 (234)
T cd03251 139 LSGGQRQRIAI------------------------------------ARALLKDPPILILDEATSALDTESERLVQAALE 182 (234)
T ss_pred CCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999998887765
Q ss_pred h--cCceEEEecCCCCchhhccceEEEEcCC
Q 000647 1336 D--MGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1336 ~--~~~TvI~IaHRl~~i~~~~~~l~l~~g~ 1364 (1374)
+ .+.|+|.++|++..+...|+++.|.+|+
T Consensus 183 ~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~ 213 (234)
T cd03251 183 RLMKNRTTFVIAHRLSTIENADRIVVLEDGK 213 (234)
T ss_pred HhcCCCEEEEEecCHHHHhhCCEEEEecCCe
Confidence 4 4899999999998888899999996554
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=319.89 Aligned_cols=191 Identities=25% Similarity=0.392 Sum_probs=164.2
Q ss_pred CCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCccccccEEEEecC
Q 000647 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~~~~~~i~~v~Q~ 521 (1374)
.+.|+++|+++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+||+
T Consensus 37 ~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------~i~yv~q~ 106 (282)
T cd03291 37 DNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------RISFSSQF 106 (282)
T ss_pred CCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------EEEEEeCc
Confidence 457999999985 35799999999999999999999999999999999999999999999986 59999999
Q ss_pred CCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccc---cCCCCCChhHHHHHHHHHHHccCCC
Q 000647 522 PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 522 p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
++++..|++||+.++... ...++.++++.+++.+.++.+|....+ ..+..||||||||++||||++.+|+
T Consensus 107 ~~l~~~tv~enl~~~~~~-------~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 107 SWIMPGTIKENIIFGVSY-------DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred ccccccCHHHHhhccccc-------CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999875321 123456677888888888776643221 2246899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHH-H--hcCCEEEEEccChhhHhhccEEEEecC
Q 000647 599 FAILDECTSAVTTDMEERFCAKV-R--AMGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 599 illLDEptsaLD~~~~~~i~~~l-~--~~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
++||||||++||+.+...+++.+ + ..+.|+|++||+++.+..+|++++|++
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~ 233 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHE 233 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEEC
Confidence 99999999999999999887643 2 247899999999999999999999976
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=322.25 Aligned_cols=198 Identities=23% Similarity=0.249 Sum_probs=163.7
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCC-----ccEEEeCCCCc--------
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVGS-------- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~-----~G~I~~~g~~~-------- 509 (1374)
+.++++|+++.|+ ++++++|+||+|++|++++|+||||||||||+++|+|+++|. +|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 3589999999986 467999999999999999999999999999999999999997 69999988541
Q ss_pred cccccEEEEecCCCCCcCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCChhH----HhcCCCCccccCCCCCChhHH
Q 000647 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~----~~~~~~~~~~~~g~~LSgGqk 584 (1374)
.+++.++|+||+|.++..|++||+.++....... ....++.+.++++.+++.+. .++. ..+||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~Gq~ 153 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKS--------GLALSGGQQ 153 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCC--------cccCCHHHH
Confidence 2356799999999988889999998764211110 11123446667788887543 3332 368999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 585 QRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .+|++++|++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~ 221 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLT 221 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeC
Confidence 999999999999999999999999999999999888765 4789999999999876 5799999975
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=308.62 Aligned_cols=198 Identities=24% Similarity=0.282 Sum_probs=168.0
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEe
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYV 1177 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~V 1177 (1374)
|+|+||++.|. .+.+++|+||+|++||.+.++|||||||||+++++-||.+|++|+|.+||.||+++ ..+|++|+||
T Consensus 2 I~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 2 IEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred ceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 79999999885 67899999999999999999999999999999999999999999999999999998 4788999999
Q ss_pred cCCCCCCCc-chHHHhcc-CCC--hhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCch--hhhhhccCCccccc
Q 000647 1178 PQRPYTCLG-TLRDQIIY-PLS--REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY--LLEREEVGWDANLN 1251 (1374)
Q Consensus 1178 pQ~P~Lf~G-TlR~Nl~y-p~~--~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~--~v~~~~~Gldt~~~ 1251 (1374)
=|.--||+- |+.+||.. |.- -+.+.+ ++...+.|+.++|.. +..|-
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i-------------------~~r~~ELl~lvgL~p~~~~~Ry--------- 132 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERI-------------------KKRADELLDLVGLDPSEYADRY--------- 132 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHH-------------------HHHHHHHHHHhCCCHHHHhhcC---------
Confidence 999998864 99999974 210 011111 234567788888753 34443
Q ss_pred cccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHH
Q 000647 1252 WEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLY 1331 (1374)
Q Consensus 1252 ~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~ 1331 (1374)
..+||||||||+++ ||||..+|+|+|+|||-+|||+-+.+.+|
T Consensus 133 -P~eLSGGQQQRVGv------------------------------------~RALAadP~ilLMDEPFgALDpI~R~~lQ 175 (309)
T COG1125 133 -PHELSGGQQQRVGV------------------------------------ARALAADPPILLMDEPFGALDPITRKQLQ 175 (309)
T ss_pred -chhcCcchhhHHHH------------------------------------HHHHhcCCCeEeecCCccccChhhHHHHH
Confidence 46799999999999 99999999999999999999999998887
Q ss_pred HHHH----hcCceEEEecCCC-CchhhccceEEEEcC
Q 000647 1332 RLAK----DMGITFVTSSQRP-ALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1332 ~~~~----~~~~TvI~IaHRl-~~i~~~~~~l~l~~g 1363 (1374)
+.++ +.|.|+|.|+|+. +.++..|++..+.+|
T Consensus 176 ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G 212 (309)
T COG1125 176 EEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAG 212 (309)
T ss_pred HHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCC
Confidence 6443 4699999999998 789999999999443
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=317.90 Aligned_cols=196 Identities=24% Similarity=0.294 Sum_probs=160.1
Q ss_pred EEEeeeEEEcCC------CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCC----C-c----
Q 000647 445 IEFSGVKVVTPT------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV----G-S---- 509 (1374)
Q Consensus 445 i~~~~v~~~~~~------~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~----~-~---- 509 (1374)
++++|+++.|++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. + .
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999853 247999999999999999999999999999999999999999999999732 2 0
Q ss_pred ----cc-cccEEEEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHH-hcCCCCccccCCCCCChh
Q 000647 510 ----DL-NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDELSLG 582 (1374)
Q Consensus 510 ----~~-~~~i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~~~~~~g~~LSgG 582 (1374)
+. ++.++|+||+|.++. .|++||+.++............+++.++++.+++.+.. ++.+ .+||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G 153 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPP--------ATFSGG 153 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCc--------ccCCHH
Confidence 01 346999999998765 59999997643211111111234667889999997643 4433 689999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEec
Q 000647 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLD 648 (1374)
Q Consensus 583 qkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~ 648 (1374)
||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|+++.+.
T Consensus 154 ~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 154 EQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 99999999999999999999999999999999999888764 4899999999999885 799998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=326.59 Aligned_cols=198 Identities=23% Similarity=0.306 Sum_probs=164.1
Q ss_pred CCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc-----CCccEEEeCCCCc-------
Q 000647 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 509 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~-----~~~G~I~~~g~~~------- 509 (1374)
.+.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 37 ~~~l~i~~l~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 37 ETVIEARDLNVFYG-DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CceEEEEEEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 45699999999986 4679999999999999999999999999999999999997 6899999998531
Q ss_pred -cccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChh----HHhcCCCCccccCCCCCChhHH
Q 000647 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1374)
Q Consensus 510 -~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----~~~~~~~~~~~~~g~~LSgGqk 584 (1374)
.+++.++|+||++.++..|++||+.++...... ....++++.++++.+++.. ..++.+ .+||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~--------~~LSgGe~ 186 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGY-DGDIDERVEESLRRAALWDEVKDQLDSSG--------LDLSGGQQ 186 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCC-cHHHHHHHHHHHHHcCCCchhHHHHhCCc--------ccCCHHHH
Confidence 235689999999998888999999875321111 1112456788899998853 334433 68999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhc--CCEEEEEccChhhHh-hccEEE-EecC
Q 000647 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVL-SLDG 649 (1374)
Q Consensus 585 QRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~~--~~TiI~vtH~~~~~~-~~d~il-~l~~ 649 (1374)
||++|||||+++|+++||||||++||+.+.+.+.+.+++. +.|+|++||+++.+. .+|+++ ++++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~ 255 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTG 255 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeC
Confidence 9999999999999999999999999999999999888753 579999999999875 699975 4554
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=323.27 Aligned_cols=202 Identities=22% Similarity=0.234 Sum_probs=163.8
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc--C---CccEEEeCCCCc--------
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVGS-------- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~--~---~~G~I~~~g~~~-------- 509 (1374)
+.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 3 ~~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 4689999999996 4679999999999999999999999999999999999986 3 689999998541
Q ss_pred cccccEEEEecCCCCCc-CCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHH
Q 000647 510 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRl 587 (1374)
.+++.++|+||++.++. .|++||+.++....... ....++++.++++.+++.+...... + ....+||||||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~---~~~~~LS~G~~qrl 157 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL-K---SNAMELSGGQQQRL 157 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHh-h---CCcCcCCHHHHHHH
Confidence 23567999999999887 69999998753211100 1112345678888999864321110 0 01368999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 588 alARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+||||++.+|+++||||||++||+.+.+.+++.+++ .++|+|++||+++.+ ..||+++++++
T Consensus 158 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14256 158 CIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYM 222 (252)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEEC
Confidence 999999999999999999999999999999888765 368999999999987 57999999975
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=325.06 Aligned_cols=198 Identities=22% Similarity=0.236 Sum_probs=163.6
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc--C---CccEEEeCCCCc--------
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVGS-------- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~--~---~~G~I~~~g~~~-------- 509 (1374)
..++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.+.
T Consensus 11 ~~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 11 EVYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred ceEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 4799999999986 4679999999999999999999999999999999999987 3 599999998641
Q ss_pred cccccEEEEecCCCCCcCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCChhH----HhcCCCCccccCCCCCChhHH
Q 000647 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~----~~~~~~~~~~~~g~~LSgGqk 584 (1374)
.+++.++|+||+|.++..|++||+.++....... .....+++.++++.+++.+. .++. ..+||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--------~~~LS~Gq~ 161 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ--------ALSLSGGQQ 161 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCC--------cccCCHHHH
Confidence 2356799999999988889999998753211100 01112346677888888543 2332 368999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 585 QRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||++|||+++++|+++||||||++||+.+...+.+.+++ .++|+|+|||+++.+. .+|++++|++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 229 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYM 229 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999988765 3789999999999874 7999999975
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=324.22 Aligned_cols=203 Identities=20% Similarity=0.243 Sum_probs=162.8
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc-----CCcccE
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCGI 1174 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~-----~~r~~i 1174 (1374)
|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..|.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFGG-RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 478999999864 56999999999999999999999999999999999999999999999999886542 346689
Q ss_pred EEecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccc
Q 000647 1175 FYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1374)
Q Consensus 1175 ~~VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g 1253 (1374)
+||||+|.+|.+ |++||+.++..... +. ..+...+.+.++++.+++.+...+. .
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~---------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~ 134 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHT---------RL------SEEEIREIVLEKLEAVGLRGAEDLY----------P 134 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhcc---------CC------CHHHHHHHHHHHHHHcCCchhhcCC----------h
Confidence 999999999986 99999976421000 00 0000123355677777775443332 3
Q ss_pred cCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHH
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL 1333 (1374)
Q Consensus 1254 ~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~ 1333 (1374)
..||||||||++| ||||+++|+++||||||++||.++.+.+.+.
T Consensus 135 ~~LSgG~~qrv~i------------------------------------a~al~~~p~llllDEPt~~LD~~~~~~l~~~ 178 (235)
T cd03261 135 AELSGGMKKRVAL------------------------------------ARALALDPELLLYDEPTAGLDPIASGVIDDL 178 (235)
T ss_pred hhCCHHHHHHHHH------------------------------------HHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence 5699999999999 9999999999999999999999999887776
Q ss_pred HHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1334 AKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1334 ~~~----~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
+++ .|+|+|+|+|+++.+ .+.|+++.|.+|+
T Consensus 179 l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~ 214 (235)
T cd03261 179 IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGK 214 (235)
T ss_pred HHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCe
Confidence 543 489999999999765 5689999996543
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=324.24 Aligned_cols=196 Identities=23% Similarity=0.286 Sum_probs=162.0
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCCc--------c
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS--------D 510 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~~--------~ 510 (1374)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. .
T Consensus 4 ~l~i~~v~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYG-SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEEC-CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 589999999986 46799999999999999999999999999999999999974 799999998541 2
Q ss_pred ccccEEEEecCCCCCc-CCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCChh----HHhcCCCCccccCCCCCChhHH
Q 000647 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1374)
Q Consensus 511 ~~~~i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~----~~~~~~~~~~~~~g~~LSgGqk 584 (1374)
+++.++|++|++.++. .|++||+.++...... .....++++.++++.+++.+ ..++.+ .+||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~ 154 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPG--------GGLSGGQQ 154 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc--------ccCCHHHH
Confidence 3467999999998876 5999999875321110 01112345677888898853 333333 68999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEec
Q 000647 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLD 648 (1374)
Q Consensus 585 QRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~ 648 (1374)
||++||||++++|+++||||||++||+.+...+.+.+++ .++|+|+|||+++.+ +.+|++++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~ 221 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFN 221 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 999999999999999999999999999999999888764 368999999999987 5799999997
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=340.15 Aligned_cols=204 Identities=18% Similarity=0.262 Sum_probs=169.2
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEec
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~Vp 1178 (1374)
.|+++||++.|+++..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.++|.++.+....+++|+|||
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 38999999999656789999999999999999999999999999999999999999999999999887643446799999
Q ss_pred CCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCC
Q 000647 1179 QRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1374)
Q Consensus 1179 Q~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LS 1257 (1374)
|+|.+|+ .|++|||.|+..... . ......+.+.++++.++|.++.++.| .+||
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~----------~------~~~~~~~~~~~~l~~~gL~~~~~~~~----------~~LS 136 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRG----------M------PKAEIEERVAEAARILELEPLLDRKP----------RELS 136 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcC----------C------CHHHHHHHHHHHHHHcCChhHhhCCh----------hhCC
Confidence 9999996 599999998753100 0 00001234667888888877666543 5799
Q ss_pred hhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH--
Q 000647 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK-- 1335 (1374)
Q Consensus 1258 gGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~-- 1335 (1374)
||||||+|| ||||+++|++||||||||+||..+.+.+.+.++
T Consensus 137 gGq~QRval------------------------------------ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l 180 (356)
T PRK11650 137 GGQRQRVAM------------------------------------GRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRL 180 (356)
T ss_pred HHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999987766443
Q ss_pred --hcCceEEEecCCCC-chhhccceEEEEcCC
Q 000647 1336 --DMGITFVTSSQRPA-LIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1336 --~~~~TvI~IaHRl~-~i~~~~~~l~l~~g~ 1364 (1374)
+.|+|+|.|+|++. ...+.|+++.+.+|+
T Consensus 181 ~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~ 212 (356)
T PRK11650 181 HRRLKTTSLYVTHDQVEAMTLADRVVVMNGGV 212 (356)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 34899999999985 567889998886543
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=322.62 Aligned_cols=197 Identities=21% Similarity=0.245 Sum_probs=162.8
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCCc--------c
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS--------D 510 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~~--------~ 510 (1374)
.++++||++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+. .
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYGD-FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEECC-ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 5899999999864 6799999999999999999999999999999999999763 699999998541 2
Q ss_pred ccccEEEEecCCCCCcCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCChhH----HhcCCCCccccCCCCCChhHHH
Q 000647 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 585 (1374)
Q Consensus 511 ~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~----~~~~~~~~~~~~g~~LSgGqkQ 585 (1374)
+++.++|+||+|.++..|++||+.++....... ....++++.++++.+++.+. .++. ..+|||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~q 153 (250)
T PRK14240 82 LRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--------ALGLSGGQQQ 153 (250)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcC--------CCCCCHHHHH
Confidence 356799999999988899999998753211100 01123456778888887532 3332 2689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 586 RlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|++||||++++|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+ ..+|+++++++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~ 220 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLN 220 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEEC
Confidence 99999999999999999999999999999999888765 378999999999976 46999999985
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=322.28 Aligned_cols=203 Identities=22% Similarity=0.286 Sum_probs=164.3
Q ss_pred CEEEeeeEEeCCCc---ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccC-----C
Q 000647 1099 SISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG-----S 1170 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~---~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~-----~ 1170 (1374)
.|+++||++.|++. +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++..... .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 48999999999753 579999999999999999999999999999999999999999999999998876521 2
Q ss_pred -cccEEEecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcc
Q 000647 1171 -GCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1374)
Q Consensus 1171 -r~~i~~VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt 1248 (1374)
+++++||||+|.+|++ |+++|+.++... .+. ..+..++.+.++++.++|.+...+.
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~gl~~~~~~~------ 142 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLI----------GKK------KPAEINSRALEMLAAVGLEHRANHR------ 142 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHh----------cCC------CHHHHHHHHHHHHHHcCCchhhhCC------
Confidence 3579999999999876 999999764210 000 0000123456778887775543332
Q ss_pred ccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHH
Q 000647 1249 NLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEE 1328 (1374)
Q Consensus 1249 ~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~ 1328 (1374)
...||||||||++| |||++++|+++||||||++||.++.+
T Consensus 143 ----~~~LSgG~~qrl~l------------------------------------a~al~~~p~lllLDEPt~~LD~~~~~ 182 (233)
T PRK11629 143 ----PSELSGGERQRVAI------------------------------------ARALVNNPRLVLADEPTGNLDARNAD 182 (233)
T ss_pred ----hhhCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 35699999999999 99999999999999999999999998
Q ss_pred HHHHHHHh----cCceEEEecCCCCchhhccceEEEEcC
Q 000647 1329 QLYRLAKD----MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1329 ~l~~~~~~----~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
.+.+.+++ .|+|+|.|+|+++.+...++++.|.+|
T Consensus 183 ~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G 221 (233)
T PRK11629 183 SIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDG 221 (233)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECC
Confidence 87765543 489999999999888877888888554
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=320.43 Aligned_cols=195 Identities=27% Similarity=0.394 Sum_probs=165.8
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----cccccEEEEec
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 520 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----~~~~~i~~v~Q 520 (1374)
|+++|+++.|++ ++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ..++.++|+||
T Consensus 1 l~~~~l~~~~~~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 1 LKVENLSKDWKE--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred CeeEeEEEEeCC--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 468899998863 389999999999999999999999999999999999999999999998641 12468999999
Q ss_pred CCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000647 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1374)
Q Consensus 521 ~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1374)
++.++. .|+.||+.++...........++++.++++.++|.++.++.+ .+||||||||++||||++++|++
T Consensus 79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP--------ETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc--------ccCCHHHHHHHHHHHHHHcCCCE
Confidence 998875 699999987532211001112345678899999998888876 68999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 600 llLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++|||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|+++++++
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~ 205 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLN 205 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 999999999999999999887764 3899999999999875 6999999975
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=334.26 Aligned_cols=198 Identities=22% Similarity=0.282 Sum_probs=161.3
Q ss_pred cEEEeeeEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc----CCccEEEeCCCCc------c
Q 000647 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----LVSGHIAKPGVGS------D 510 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~---~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~----~~~G~I~~~g~~~------~ 510 (1374)
.++++|+++.|++. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+- +
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 48999999998653 469999999999999999999999999999999999998 4899999999641 1
Q ss_pred ----ccccEEEEecCCC--CC-cCCHHHHhcCCCCCC-cccCCCCHHHHHHHHHHcCChh---HHhcCCCCccccCCCCC
Q 000647 511 ----LNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDEL 579 (1374)
Q Consensus 511 ----~~~~i~~v~Q~p~--l~-~~Tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~~~~~~g~~L 579 (1374)
.++.|+||||+|. +. ..|+.+++..+.... ........+++.++++.++|.+ ..++.| .+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p--------~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYP--------HQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCc--------hhC
Confidence 1246999999995 33 357777765432111 0011123456788999999964 455655 689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 580 SgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|||||||++|||||+.+|+++|+||||++||+.+...+++.+++ .|.|+|+||||++.+ ..+|+|++|.+
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~ 229 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYA 229 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999887754 489999999999988 57999999975
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=324.75 Aligned_cols=211 Identities=23% Similarity=0.273 Sum_probs=165.4
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc-----CCcccE
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCGI 1174 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~-----~~r~~i 1174 (1374)
|+++||++.|+.++++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..|.++
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 689999999974467999999999999999999999999999999999999999999999999886542 246679
Q ss_pred EEecCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccc
Q 000647 1175 FYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1374)
Q Consensus 1175 ~~VpQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g 1253 (1374)
+||||+|.+|. .|+++|+.++.......... ..+. .....++++.++++.+++.....+ ..
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~l~~~~l~~~~~~----------~~ 143 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRS--LLGR------FSEEDKERALSALERVGLADKAYQ----------RA 143 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhh--hhcc------ccHHHHHHHHHHHHHcCcHhhhcC----------Cc
Confidence 99999999886 59999997653210000000 0000 001113446677887777544332 23
Q ss_pred cCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHH
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL 1333 (1374)
Q Consensus 1254 ~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~ 1333 (1374)
..||||||||++| ||||+++|++|||||||++||.++.+.+.+.
T Consensus 144 ~~LSgG~~qrv~l------------------------------------a~al~~~p~llllDEPt~~LD~~~~~~l~~~ 187 (243)
T TIGR02315 144 DQLSGGQQQRVAI------------------------------------ARALAQQPDLILADEPIASLDPKTSKQVMDY 187 (243)
T ss_pred ccCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 5799999999999 9999999999999999999999999877765
Q ss_pred HHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1334 AKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1334 ~~~----~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
+++ .|+|+|+|+|+++.+ ++.|+++.|.+|+
T Consensus 188 l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~ 223 (243)
T TIGR02315 188 LKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGE 223 (243)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 542 389999999999876 6789999996553
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=313.53 Aligned_cols=182 Identities=28% Similarity=0.361 Sum_probs=161.7
Q ss_pred eeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------c---c-ccccEEEEecCCCCCc-CC
Q 000647 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------S---D-LNKEIFYVPQRPYTAV-GT 528 (1374)
Q Consensus 460 ~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~---~-~~~~i~~v~Q~p~l~~-~T 528 (1374)
-++|+||+|+.||+..|.|-||||||||+|++.||++|++|+|.++|.+ . + .+++++.|+|+.-|++ .|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 5789999999999999999999999999999999999999999999975 1 1 2478999999987655 69
Q ss_pred HHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 000647 529 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608 (1374)
Q Consensus 529 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEptsa 608 (1374)
|.||..||.......+....++..+.|+.+||+.+.+++| ++||||+|||+.|||||..+|+|++||||+||
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp--------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSA 194 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP--------NELSGGMQQRVGLARALANDPDILLMDEAFSA 194 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc--------ccccchHHHHHHHHHHHccCCCEEEecCchhh
Confidence 9999999987655544455677889999999999999999 68999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH----hcCCEEEEEccChhhH-hhccEEEEecC
Q 000647 609 VTTDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 609 LD~~~~~~i~~~l~----~~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|||--..++++.+. +.++|||+||||++.. +..|||..|++
T Consensus 195 LDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkd 240 (386)
T COG4175 195 LDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240 (386)
T ss_pred cChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecC
Confidence 99998888877653 3589999999999875 67899999986
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=304.83 Aligned_cols=212 Identities=22% Similarity=0.265 Sum_probs=168.1
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc-----cCCccc
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-----AGSGCG 1173 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~-----~~~r~~ 1173 (1374)
.|+++||+..||+++.+|+|+||+|++||.|+|+||||||||||++.|.|+++|++|+|.++|.++... ..+|.+
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 489999999999999999999999999999999999999999999999999999999999999999887 345778
Q ss_pred EEEecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccccc
Q 000647 1174 IFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252 (1374)
Q Consensus 1174 i~~VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~ 1252 (1374)
|++|.|.|-|-+- |+-+|+..|.-.....+..+ .+. ..+.......++|+.||+.+..- -+
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~sl--fgl------fsk~dk~~Al~aLervgi~~~A~----------qr 144 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSL--FGL------FSKEDKAQALDALERVGILDKAY----------QR 144 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHH--hCC------CCHHHHHHHHHHHHHcCcHHHHH----------HH
Confidence 9999999999654 89999875431100001000 000 00011122446788888754421 12
Q ss_pred ccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHH
Q 000647 1253 EDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYR 1332 (1374)
Q Consensus 1253 g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~ 1332 (1374)
-+.||||||||++| ||||..+|||+|-|||||+||+.+.+.+.+
T Consensus 145 a~~LSGGQQQRVaI------------------------------------ARaL~Q~pkiILADEPvasLDp~~a~~Vm~ 188 (258)
T COG3638 145 ASTLSGGQQQRVAI------------------------------------ARALVQQPKIILADEPVASLDPESAKKVMD 188 (258)
T ss_pred hccCCcchhHHHHH------------------------------------HHHHhcCCCEEecCCcccccChhhHHHHHH
Confidence 46899999999999 999999999999999999999999877666
Q ss_pred HHH----hcCceEEEecCCCCc-hhhccceEEEEcCC
Q 000647 1333 LAK----DMGITFVTSSQRPAL-IPFHSLELRLIDGE 1364 (1374)
Q Consensus 1333 ~~~----~~~~TvI~IaHRl~~-i~~~~~~l~l~~g~ 1364 (1374)
.++ +.|.|+|+.-|...+ .+|.++++-|.+|+
T Consensus 189 ~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ 225 (258)
T COG3638 189 ILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR 225 (258)
T ss_pred HHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCc
Confidence 544 469999999999965 47889998886664
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=332.25 Aligned_cols=200 Identities=24% Similarity=0.335 Sum_probs=173.8
Q ss_pred CCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEe
Q 000647 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 1177 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~V 1177 (1374)
..|+|+||+..|- ...+++|+||+|++||.+.+.|||||||||++++|.||..|++|+|.++|.||.++--.++.|++|
T Consensus 4 ~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 4 PALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred ceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 4699999999996 788999999999999999999999999999999999999999999999999999996566689999
Q ss_pred cCCCCCCC-cchHHHhccCCCh----hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccccc
Q 000647 1178 PQRPYTCL-GTLRDQIIYPLSR----EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252 (1374)
Q Consensus 1178 pQ~P~Lf~-GTlR~Nl~yp~~~----~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~ 1252 (1374)
+|+.-||+ -|++|||.||+.. .+++ -++.+.++|+.|+|.++-.+.
T Consensus 83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~-------------------i~~rv~e~L~lV~L~~~~~R~---------- 133 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKVRKKLKKAE-------------------IKARVEEALELVGLEGFADRK---------- 133 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhhcCCCCHHH-------------------HHHHHHHHHHHcCchhhhhhC----------
Confidence 99999986 5999999999861 1111 123577889999998766654
Q ss_pred ccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHH
Q 000647 1253 EDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYR 1332 (1374)
Q Consensus 1253 g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~ 1332 (1374)
..+||||||||+|+ ||||..+|++||||||-||||....+.|+.
T Consensus 134 p~qLSGGQqQRVAL------------------------------------ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~ 177 (352)
T COG3842 134 PHQLSGGQQQRVAL------------------------------------ARALVPEPKVLLLDEPLSALDAKLREQMRK 177 (352)
T ss_pred hhhhChHHHHHHHH------------------------------------HHHhhcCcchhhhcCcccchhHHHHHHHHH
Confidence 46799999999999 999999999999999999999998776654
Q ss_pred H----HHhcCceEEEecCCC-CchhhccceEEEEcC
Q 000647 1333 L----AKDMGITFVTSSQRP-ALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1333 ~----~~~~~~TvI~IaHRl-~~i~~~~~~l~l~~g 1363 (1374)
- .++.|+|+|.|||+- +.+...|++..+.+|
T Consensus 178 Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G 213 (352)
T COG3842 178 ELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDG 213 (352)
T ss_pred HHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCC
Confidence 3 345699999999996 778889999998655
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=323.05 Aligned_cols=196 Identities=21% Similarity=0.228 Sum_probs=162.4
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc-----CCccEEEeCCCCc--------cc
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS--------DL 511 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~-----~~~G~I~~~g~~~--------~~ 511 (1374)
-+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+. .+
T Consensus 6 ~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 46899999985 5689999999999999999999999999999999999986 4799999998541 24
Q ss_pred cccEEEEecCCCCCcCCHHHHhcCCCCCCcc--cCCCCHHHHHHHHHHcCChhH----HhcCCCCccccCCCCCChhHHH
Q 000647 512 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 585 (1374)
Q Consensus 512 ~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~----~~~~~~~~~~~~g~~LSgGqkQ 585 (1374)
++.++|+||+|.++.+|++||+.++...... .....++++.++++.+++.+. .++. ...|||||||
T Consensus 85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~Gq~q 156 (251)
T PRK14244 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDS--------AFELSGGQQQ 156 (251)
T ss_pred hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcC--------hhhCCHHHHH
Confidence 5689999999998888999999875211110 001123456788999998653 2332 2689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 586 RlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|++||||++++|+++||||||++||+.+.+.+.+.+++ .++|+|+|||+++.+. .+|++++|++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~ 223 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQS 223 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEEC
Confidence 99999999999999999999999999999999888764 4799999999999875 6999999986
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=324.33 Aligned_cols=196 Identities=24% Similarity=0.324 Sum_probs=164.9
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCC--------ccEEEeCCCCc------c
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV--------SGHIAKPGVGS------D 510 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~--------~G~I~~~g~~~------~ 510 (1374)
|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+. .
T Consensus 2 l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 2 LTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred eEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 78999999885 568999999999999999999999999999999999999998 99999998541 2
Q ss_pred ccccEEEEecCCC-CCcCCHHHHhcCCCCCCc----ccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHH
Q 000647 511 LNKEIFYVPQRPY-TAVGTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1374)
Q Consensus 511 ~~~~i~~v~Q~p~-l~~~Tv~eni~~~~~~~~----~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQ 585 (1374)
+++.++|+||++. ++..|++||+.++..... .......+.+.++++.+++.+..++.+ .+|||||||
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~q 152 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV--------TTLSGGELA 152 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHH
Confidence 3456899999986 467899999987532110 001112345778899999988777654 689999999
Q ss_pred HHHHHHHHc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 586 RLGMARLFY---------HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 586 RlalARal~---------~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|++|||||+ .+|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .+|++++|++
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~ 230 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLAD 230 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999 59999999999999999999999887764 3799999999999885 7999999975
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=318.78 Aligned_cols=203 Identities=23% Similarity=0.290 Sum_probs=164.3
Q ss_pred EEEeeeEEeCCCc---ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc-cCCcccEE
Q 000647 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIF 1175 (1374)
Q Consensus 1100 I~f~~V~~~yp~~---~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~-~~~r~~i~ 1175 (1374)
|+++||++.|++. +++++|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.++|.++... ...|++++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 6899999999763 2799999999999999999999999999999999999999999999999988653 24467899
Q ss_pred EecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccccccc
Q 000647 1176 YVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1374)
Q Consensus 1176 ~VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~ 1254 (1374)
++||+|.+|.+ |++||+.++... .+. .....++.+.++++.+++.+..+.. ..
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~ 135 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGL----------YGL------KGDELTARLEELADRLGMEELLDRR----------VG 135 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHH----------cCC------CHHHHHHHHHHHHHHcCCHHHHhhh----------hh
Confidence 99999999985 999999753210 000 0000123456778888876554432 35
Q ss_pred CCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHH
Q 000647 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1334 (1374)
Q Consensus 1255 ~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~ 1334 (1374)
.||||||||++| |||++++|+++||||||++||..+.+.+.+.+
T Consensus 136 ~LS~G~~qrv~l------------------------------------aral~~~p~illlDEPt~~LD~~~~~~l~~~l 179 (218)
T cd03266 136 GFSTGMRQKVAI------------------------------------ARALVHDPPVLLLDEPTTGLDVMATRALREFI 179 (218)
T ss_pred hcCHHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 699999999999 99999999999999999999999998777765
Q ss_pred Hh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1335 KD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1335 ~~---~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
++ .|+|+|+|+|++..+ ++.++++.+.+|+
T Consensus 180 ~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 213 (218)
T cd03266 180 RQLRALGKCILFSTHIMQEVERLCDRVVVLHRGR 213 (218)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 43 489999999999754 5788999996553
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=316.38 Aligned_cols=201 Identities=27% Similarity=0.359 Sum_probs=171.8
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccc---ccCCcccEE
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE---EAGSGCGIF 1175 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~---~~~~r~~i~ 1175 (1374)
.|+++|++|+||+++++|+++||+|++||.++|+|+||||||||+++|.|+.+|.+|.|.++|.+++. ...+|++++
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 48999999999888899999999999999999999999999999999999999999999999999874 356788999
Q ss_pred EecCCC--CCCCcchHHHhccCCCh---hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc
Q 000647 1176 YVPQRP--YTCLGTLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1374)
Q Consensus 1176 ~VpQ~P--~Lf~GTlR~Nl~yp~~~---~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~ 1250 (1374)
+|.|+| .+|..|+.|.++|+... .+++ -++.+.++|+.+++.++.++.
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e-------------------~~~rv~~~l~~vgl~~~~~r~-------- 135 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREE-------------------IEERVAEALELVGLEELLDRP-------- 135 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHH-------------------HHHHHHHHHHHcCchhhccCC--------
Confidence 999999 78999999999987531 1111 134577889999998775554
Q ss_pred ccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHH
Q 000647 1251 NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL 1330 (1374)
Q Consensus 1251 ~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l 1330 (1374)
...||||||||+|| |.+|..+|+|+|||||||+||....+.+
T Consensus 136 --p~~LSGGqkqRvaI------------------------------------A~vLa~~P~iliLDEPta~LD~~~~~~l 177 (235)
T COG1122 136 --PFNLSGGQKQRVAI------------------------------------AGVLAMGPEILLLDEPTAGLDPKGRREL 177 (235)
T ss_pred --ccccCCcceeeHHh------------------------------------hHHHHcCCCEEEEcCCCCCCCHHHHHHH
Confidence 35699999999999 9999999999999999999999998877
Q ss_pred HHHHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1331 YRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1331 ~~~~~~----~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
.+++++ .|.|+|+|+|++..+ .+.++++.+.+|+
T Consensus 178 ~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~ 216 (235)
T COG1122 178 LELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGK 216 (235)
T ss_pred HHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCE
Confidence 665543 378999999999655 5588999986654
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=311.75 Aligned_cols=187 Identities=26% Similarity=0.359 Sum_probs=157.5
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----ccccccEEEEe
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~~~~~~i~~v~ 519 (1374)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 46899999885 4679999999999999999999999999999999999999999999999864 12346799999
Q ss_pred cCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000647 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 520 Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
|++.++. .|++||+.+...... ..+.++.++++.+++++..++.+ .+||||||||++||||++++|+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPA--------AQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCCh--------hhcCHHHHHHHHHHHHHhcCCC
Confidence 9998876 699999976432111 12346788999999998877655 5899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHhhccEEE
Q 000647 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVL 645 (1374)
Q Consensus 599 illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~~~d~il 645 (1374)
++||||||++||+.+.+.+.+.+++ .|.|+|++||+...+. +++++
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~ 196 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EAREL 196 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEe
Confidence 9999999999999999999888764 4889999999985433 34444
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=325.86 Aligned_cols=199 Identities=21% Similarity=0.215 Sum_probs=162.3
Q ss_pred CCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc-----CCccEEEeCCCCc-------
Q 000647 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 509 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~-----~~~G~I~~~g~~~------- 509 (1374)
...++++|+++.|+ ++++++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 22 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 22 KVVFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred ceEEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 34799999999986 4579999999999999999999999999999999999987 6999999998531
Q ss_pred -cccccEEEEecCCCCCcCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCh----hHHhcCCCCccccCCCCCChhH
Q 000647 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGE 583 (1374)
Q Consensus 510 -~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~~~~~~g~~LSgGq 583 (1374)
.+++.++|+||+|.++..|++||+.++....... ....+..+.++++.+++. +..++. ...|||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--------~~~LSgGe 172 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--------AYGLSGGQ 172 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcC--------cccCCHHH
Confidence 2356799999999998889999998753211100 001123345667666543 333333 36899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 584 kQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||++|||||+++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|++++|++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~ 241 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLN 241 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999988765 3789999999999875 6999999975
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=317.41 Aligned_cols=197 Identities=24% Similarity=0.248 Sum_probs=164.1
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecC
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ 1179 (1374)
|+++||++.|++ +++++|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.++|.++......++++++|||
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYGK-KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEECC-eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 578999998864 6799999999999999999999999999999999999999999999999988654334567999999
Q ss_pred CCCCC-CcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCCh
Q 000647 1180 RPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1374)
Q Consensus 1180 ~P~Lf-~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSg 1258 (1374)
+|.+| ..|++||+.++.... ...++++.++++.+++.+..++. ...|||
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~--------------------~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 129 (208)
T cd03268 80 APGFYPNLTARENLRLLARLL--------------------GIRKKRIDEVLDVVGLKDSAKKK----------VKGFSL 129 (208)
T ss_pred CCccCccCcHHHHHHHHHHhc--------------------CCcHHHHHHHHHHcCCHHHHhhh----------HhhCCH
Confidence 99887 579999997542100 01234566778888876554432 356999
Q ss_pred hhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--
Q 000647 1259 GEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD-- 1336 (1374)
Q Consensus 1259 GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~-- 1336 (1374)
|||||++| |||++++|+++||||||++||.++.+.+.+++++
T Consensus 130 G~~qrv~l------------------------------------a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 173 (208)
T cd03268 130 GMKQRLGI------------------------------------ALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR 173 (208)
T ss_pred HHHHHHHH------------------------------------HHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999887776543
Q ss_pred -cCceEEEecCCCCch-hhccceEEEEcC
Q 000647 1337 -MGITFVTSSQRPALI-PFHSLELRLIDG 1363 (1374)
Q Consensus 1337 -~~~TvI~IaHRl~~i-~~~~~~l~l~~g 1363 (1374)
.|.|+|+++|++..+ .+.++++.|.+|
T Consensus 174 ~~~~tii~~tH~~~~~~~~~d~v~~l~~g 202 (208)
T cd03268 174 DQGITVLISSHLLSEIQKVADRIGIINKG 202 (208)
T ss_pred HCCCEEEEEcCCHHHHHHhcCEEEEEECC
Confidence 589999999999866 578999999654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=329.33 Aligned_cols=204 Identities=20% Similarity=0.291 Sum_probs=167.9
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEE
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFY 1176 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~ 1176 (1374)
-|+++||++.||..+++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++.+. ..++.+++|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 489999999998666799999999999999999999999999999999999999999999999988764 234567999
Q ss_pred ecCCC--CCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccccccc
Q 000647 1177 VPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1374)
Q Consensus 1177 VpQ~P--~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~ 1254 (1374)
|||+| .+|..|+++|+.++.... +. .....++.+.++++.++|.....+.| .
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~L~~~~~~~~----------~ 137 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNM----------GL------DKDEVERRVEEALKAVRMWDFRDKPP----------Y 137 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHc----------CC------CHHHHHHHHHHHHHHCCCHHHhcCCh----------h
Confidence 99999 678899999998652100 00 00001234567788888865554432 4
Q ss_pred CCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHH
Q 000647 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1334 (1374)
Q Consensus 1255 ~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~ 1334 (1374)
.||||||||++| ||||+++|+++||||||++||+.+.+.+.+++
T Consensus 138 ~LSgG~~qrv~l------------------------------------araL~~~p~llllDEPt~~LD~~~~~~l~~~l 181 (274)
T PRK13647 138 HLSYGQKKRVAI------------------------------------AGVLAMDPDVIVLDEPMAYLDPRGQETLMEIL 181 (274)
T ss_pred hCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 699999999999 99999999999999999999999998777655
Q ss_pred Hh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1335 KD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1335 ~~---~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
++ .|+|+|.|+|+++.+ ++.|+++.|.+|+
T Consensus 182 ~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~ 215 (274)
T PRK13647 182 DRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGR 215 (274)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 42 489999999999876 7899999996654
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=323.16 Aligned_cols=207 Identities=25% Similarity=0.352 Sum_probs=173.9
Q ss_pred EEEeeeEEeCCC--cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc--CCcccEE
Q 000647 1100 ISFSKLDIITPS--QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIF 1175 (1374)
Q Consensus 1100 I~f~~V~~~yp~--~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~--~~r~~i~ 1175 (1374)
|+++|+++.|++ ..++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..+++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 478999999875 357999999999999999999999999999999999999999999999999886542 3356799
Q ss_pred EecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccc-ccc
Q 000647 1176 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WED 1254 (1374)
Q Consensus 1176 ~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~-~g~ 1254 (1374)
|+||+|.+|+.|++||+.++.... ..+++.+.++..++.++++.+|.|+++..+ +..
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 138 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDA----------------------TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGS 138 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCC----------------------CHHHHHHHHHHcChHHHHHhhccccceeeccCCc
Confidence 999999999999999998753210 112233445556677777777888887653 467
Q ss_pred CCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHH
Q 000647 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1334 (1374)
Q Consensus 1255 ~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~ 1334 (1374)
+||||||||++| |||++++|+++||||||++||.+..+.+.+.+
T Consensus 139 ~LS~G~~qrv~l------------------------------------a~al~~~p~llllDEP~~gLD~~~~~~l~~~l 182 (238)
T cd03249 139 QLSGGQKQRIAI------------------------------------ARALLRNPKILLLDEATSALDAESEKLVQEAL 182 (238)
T ss_pred cCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 899999999999 99999999999999999999999998887766
Q ss_pred Hh--cCceEEEecCCCCchhhccceEEEEcCC
Q 000647 1335 KD--MGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1335 ~~--~~~TvI~IaHRl~~i~~~~~~l~l~~g~ 1364 (1374)
++ .|+|+|+++|+++.+.+.|+++.|.+|.
T Consensus 183 ~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~ 214 (238)
T cd03249 183 DRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQ 214 (238)
T ss_pred HHhcCCCEEEEEeCCHHHHhhCCEEEEEECCE
Confidence 53 5899999999998888899999996553
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=335.57 Aligned_cols=187 Identities=24% Similarity=0.325 Sum_probs=162.7
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-c---------ccccc
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S---------DLNKE 514 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-~---------~~~~~ 514 (1374)
|++ |+++.|.+ + .+ |+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ . ..+++
T Consensus 2 l~~-~l~k~~~~-~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLGD-L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeCC-E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 567 89998853 3 33 8999999999999999999999999999999999999999998853 1 13568
Q ss_pred EEEEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000647 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 515 i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1374)
++|+||++.++. .|++||+.|+... ...+++.++++.+++.++.++.| .+||||||||++|||||
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGq~qRvalaraL 143 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAK------SMVAQFDKIVALLGIEPLLDRYP--------GSLSGGEKQRVAIGRAL 143 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhh------hhHHHHHHHHHHcCCchhhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 999999998886 6999999987431 23457889999999998888877 68999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 594 ~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+++|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+ ..+|++++|++
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~ 204 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQ 204 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999998887754 389999999999876 57999999985
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=318.40 Aligned_cols=202 Identities=21% Similarity=0.254 Sum_probs=162.5
Q ss_pred EEEeeeEEeCCCc---ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccC-----Cc
Q 000647 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG-----SG 1171 (1374)
Q Consensus 1100 I~f~~V~~~yp~~---~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~-----~r 1171 (1374)
|+++||++.|++. +++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.+... .|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 6899999999752 579999999999999999999999999999999999999999999999998876521 22
Q ss_pred -ccEEEecCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccc
Q 000647 1172 -CGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 1249 (1374)
Q Consensus 1172 -~~i~~VpQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~ 1249 (1374)
++++||||+|.+|+ .|++||+.++.... .. ......+.+.++++.+++.+...+.
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~------- 138 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIG----------KK------SVKEAKERAYEMLEKVGLEHRINHR------- 138 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhc----------CC------CHHHHHHHHHHHHHHcCChhhhhCC-------
Confidence 57999999999985 59999997532100 00 0000122355677777775443332
Q ss_pred cccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHH
Q 000647 1250 LNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQ 1329 (1374)
Q Consensus 1250 ~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~ 1329 (1374)
...||||||||++| |||++++|+++||||||++||.++.+.
T Consensus 139 ---~~~LS~G~~qrv~l------------------------------------aral~~~p~illlDEPt~~LD~~~~~~ 179 (221)
T TIGR02211 139 ---PSELSGGERQRVAI------------------------------------ARALVNQPSLVLADEPTGNLDNNNAKI 179 (221)
T ss_pred ---hhhCCHHHHHHHHH------------------------------------HHHHhCCCCEEEEeCCCCcCCHHHHHH
Confidence 35699999999999 999999999999999999999999988
Q ss_pred HHHHHHh----cCceEEEecCCCCchhhccceEEEEcC
Q 000647 1330 LYRLAKD----MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1330 l~~~~~~----~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
+.+.+++ .++|+|+|+|+++.+...|+++.+.+|
T Consensus 180 l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G 217 (221)
T TIGR02211 180 IFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDG 217 (221)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCC
Confidence 7775542 489999999999888888888888554
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=302.15 Aligned_cols=160 Identities=31% Similarity=0.469 Sum_probs=144.1
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----ccccccEEEEe
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~~~~~~i~~v~ 519 (1374)
++++|+++.|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 468999998864 579999999999999999999999999999999999999999999999864 13456899999
Q ss_pred cCCCCCcC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCC
Q 000647 520 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 520 Q~p~l~~~-Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
|+|.++.+ |++||+. ||||||||++||||++.+|+
T Consensus 80 q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 80 EEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred cCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99988775 8888863 89999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 599 illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++||||||++||+.+.+.+.+.+++ .|.|+|++||+.+.+. .+|+++++++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~ 170 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNN 170 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999888764 3789999999999886 7999999975
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=322.35 Aligned_cols=198 Identities=21% Similarity=0.293 Sum_probs=162.1
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----c-c------
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S-D------ 510 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~-~------ 510 (1374)
..++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .
T Consensus 5 ~~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 5 PLLSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred ceEEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 36899999999964 679999999999999999999999999999999999999999999999864 1 1
Q ss_pred ---ccccEEEEecCCC--CC-cCCHHHHhcCCCCCCc-ccCCCCHHHHHHHHHHcCChh-HHhcCCCCccccCCCCCChh
Q 000647 511 ---LNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLG 582 (1374)
Q Consensus 511 ---~~~~i~~v~Q~p~--l~-~~Tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~~~~~g~~LSgG 582 (1374)
.++.++|+||+|. ++ ..|+.+|+.++..... ........++.++++.+++.+ ..++.+ .+||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G 155 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLP--------TTFSGG 155 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCC--------ccCCHH
Confidence 1346999999984 33 3588888865321100 000112345678888999863 555544 689999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 583 qkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||||++|||||+++|+++||||||++||+.+.+.+.+.+++ .|.|+|+|||+++.+. .+|+++++++
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~ 227 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQ 227 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999999999999999999887753 3889999999999986 7999999975
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=321.70 Aligned_cols=205 Identities=21% Similarity=0.288 Sum_probs=163.9
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecC
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ 1179 (1374)
|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++......+++++||||
T Consensus 3 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 3 IEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 789999999975 5799999999999999999999999999999999999999999999999988765444567999999
Q ss_pred CCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCCh
Q 000647 1180 RPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1374)
Q Consensus 1180 ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSg 1258 (1374)
+|.+|. .|++||+.++..... ..... .....++.+.++++.++|.+...+. ...||+
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~----------~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 139 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKP----------RSERP--PEAEIRAKVHELLKLVQLDWLADRY----------PAQLSG 139 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhcc----------ccccC--CHHHHHHHHHHHHHHcCChhhhhcC----------hhhCCH
Confidence 999986 599999986532100 00000 0000123356677777775444332 356999
Q ss_pred hhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--
Q 000647 1259 GEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD-- 1336 (1374)
Q Consensus 1259 GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~-- 1336 (1374)
|||||++| ||||+++|+++||||||++||.++.+.+.+++++
T Consensus 140 G~~qrl~l------------------------------------a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 183 (239)
T cd03296 140 GQRQRVAL------------------------------------ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH 183 (239)
T ss_pred HHHHHHHH------------------------------------HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999887776543
Q ss_pred --cCceEEEecCCCCc-hhhccceEEEEcC
Q 000647 1337 --MGITFVTSSQRPAL-IPFHSLELRLIDG 1363 (1374)
Q Consensus 1337 --~~~TvI~IaHRl~~-i~~~~~~l~l~~g 1363 (1374)
.|+|+|+|+|+++. ..+.++++.|.+|
T Consensus 184 ~~~~~tvii~sH~~~~~~~~~d~i~~l~~G 213 (239)
T cd03296 184 DELHVTTVFVTHDQEEALEVADRVVVMNKG 213 (239)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 38999999999975 4668888888554
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=314.68 Aligned_cols=187 Identities=25% Similarity=0.362 Sum_probs=158.9
Q ss_pred eeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----------cccccEEEE
Q 000647 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKEIFYV 518 (1374)
Q Consensus 449 ~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----------~~~~~i~~v 518 (1374)
||++.|++ +.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+
T Consensus 5 ~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 80 (214)
T cd03297 5 DIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80 (214)
T ss_pred eeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEE
Confidence 89999965 444 99999999 99999999999999999999999999999999988531 134679999
Q ss_pred ecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000647 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1374)
Q Consensus 519 ~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1374)
||++.++. .|++||+.++.... .....++++.++++.+++.+..++.+ .+||||||||++||||++++|
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p 150 (214)
T cd03297 81 FQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYP--------AQLSGGEKQRVALARALAAQP 150 (214)
T ss_pred ecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCc--------ccCCHHHHHHHHHHHHHhcCC
Confidence 99998885 59999998753211 01112356788999999988777755 689999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 598 KFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 598 ~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|+++++++
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (214)
T cd03297 151 ELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMED 207 (214)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999887754 3899999999999874 7999999975
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=314.38 Aligned_cols=194 Identities=20% Similarity=0.275 Sum_probs=162.4
Q ss_pred CCCCCCCCCEEEeeeEEeCCCc-ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--
Q 000647 1091 WNSTDYQDSISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-- 1167 (1374)
Q Consensus 1091 w~~~~~~g~I~f~~V~~~yp~~-~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~-- 1167 (1374)
||. ++.|+++|+++.|+.. +++++|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.++|.++.+.
T Consensus 1 ~~~---~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 1 WPE---HGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPL 77 (207)
T ss_pred CCC---CCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCH
Confidence 666 5789999999999863 5799999999999999999999999999999999999999999999999988655
Q ss_pred cCCcccEEEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCc
Q 000647 1168 AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWD 1247 (1374)
Q Consensus 1168 ~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gld 1247 (1374)
...|++|+||||+|.+|++|+++|+.+.... .++++.+.++ ++
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~-----------------------~~~~~~~~l~--------------~~ 120 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFSGTIRSNLDPFDEY-----------------------SDEEIYGALR--------------VS 120 (207)
T ss_pred HHHHhhEEEEecCCcccCccHHHHhcccCCC-----------------------CHHHHHHHhh--------------cc
Confidence 2346689999999999999999999642111 1122223322 11
Q ss_pred cccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHH
Q 000647 1248 ANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVE 1327 (1374)
Q Consensus 1248 t~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e 1327 (1374)
.+...||+|||||++| |||++++|+++||||||++||+++.
T Consensus 121 ---~~~~~LS~G~~qrv~l------------------------------------aral~~~p~llllDEP~~~LD~~~~ 161 (207)
T cd03369 121 ---EGGLNLSQGQRQLLCL------------------------------------ARALLKRPRVLVLDEATASIDYATD 161 (207)
T ss_pred ---CCCCcCCHHHHHHHHH------------------------------------HHHHhhCCCEEEEeCCcccCCHHHH
Confidence 1346799999999999 9999999999999999999999999
Q ss_pred HHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcC
Q 000647 1328 EQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1328 ~~l~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
+.+.+++++ .++|+|.|+|+++.+...|+++.|.+|
T Consensus 162 ~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g 199 (207)
T cd03369 162 ALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAG 199 (207)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 888876654 389999999999888778999999654
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=318.83 Aligned_cols=203 Identities=18% Similarity=0.241 Sum_probs=163.2
Q ss_pred EEEeeeEEeCCCc-ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc-cCCcccEEEe
Q 000647 1100 ISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYV 1177 (1374)
Q Consensus 1100 I~f~~V~~~yp~~-~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~-~~~r~~i~~V 1177 (1374)
|+++||++.|++. +++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 5789999999763 6799999999999999999999999999999999999999999999999988654 3345679999
Q ss_pred cCCCCCC-CcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCC
Q 000647 1178 PQRPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 1256 (1374)
Q Consensus 1178 pQ~P~Lf-~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~L 1256 (1374)
||+|.+| ..|+++|+.++... .+. ......+.++++++.++|.+..+.. ...|
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~L 134 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARL----------KGL------PKSEIKEEVELLLRVLGLTDKANKR----------ARTL 134 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHH----------cCC------CHHHHHHHHHHHHHHcCCHHHHhCh----------hhhC
Confidence 9999998 57999999754210 000 0000123356677777775443221 3569
Q ss_pred ChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh
Q 000647 1257 SLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD 1336 (1374)
Q Consensus 1257 SgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~ 1336 (1374)
|+|||||++| |||++++|+++||||||++||..+.+.+.+.+++
T Consensus 135 S~G~~qrv~l------------------------------------a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 178 (220)
T cd03263 135 SGGMKRKLSL------------------------------------AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE 178 (220)
T ss_pred CHHHHHHHHH------------------------------------HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999888776653
Q ss_pred --cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1337 --MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1337 --~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
.++|+|.++|+++.+ ++.|+++.+.+|+
T Consensus 179 ~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 179 VRKGRSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred HhcCCEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 368999999999876 5689999986553
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=329.54 Aligned_cols=200 Identities=23% Similarity=0.257 Sum_probs=164.4
Q ss_pred EEEeeeEEeCCCc----ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc----CCc
Q 000647 1100 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA----GSG 1171 (1374)
Q Consensus 1100 I~f~~V~~~yp~~----~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~----~~r 1171 (1374)
|+++||++.|+.. +++|+|+||+|++||.+||+||||||||||+++|.|+.+|.+|+|.+||.++.+.. ..+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 7899999999752 47999999999999999999999999999999999999999999999999987631 346
Q ss_pred ccEEEecCCC--CCCCcchHHHhccCCCh---hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCc--hhhhhhcc
Q 000647 1172 CGIFYVPQRP--YTCLGTLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS--YLLEREEV 1244 (1374)
Q Consensus 1172 ~~i~~VpQ~P--~Lf~GTlR~Nl~yp~~~---~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~--~~v~~~~~ 1244 (1374)
.+|+||||+| .+|..|++|||.++... +.++ ..+.+.++++.++|. ++..+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~-------------------~~~~~~~~l~~~gL~~~~~~~~--- 140 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEE-------------------IENRVKRAMNIVGLDYEDYKDK--- 140 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHH-------------------HHHHHHHHHHHcCCCchhhccC---
Confidence 7899999999 57889999999764210 0000 122356678877774 22221
Q ss_pred CCccccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCH
Q 000647 1245 GWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSV 1324 (1374)
Q Consensus 1245 Gldt~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~ 1324 (1374)
....||||||||++| ||||+.+|++|||||||++||+
T Consensus 141 -------~~~~LSgGq~qrv~i------------------------------------AraL~~~P~llllDEPt~gLD~ 177 (287)
T PRK13637 141 -------SPFELSGGQKRRVAI------------------------------------AGVVAMEPKILILDEPTAGLDP 177 (287)
T ss_pred -------CcccCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEECCccCCCH
Confidence 246799999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1325 DVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1325 ~~e~~l~~~~~~----~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
.+.+.+.+++++ .|.|+|.|+|++..+ .+.|+++.+.+|+
T Consensus 178 ~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~ 222 (287)
T PRK13637 178 KGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGK 222 (287)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999887776542 489999999999766 6899999997654
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=326.33 Aligned_cols=199 Identities=21% Similarity=0.208 Sum_probs=163.6
Q ss_pred CCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc-----CCccEEEeCCCCc-------
Q 000647 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 509 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~-----~~~G~I~~~g~~~------- 509 (1374)
...++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 37 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 37 KPHVVAKNFSIYYG-EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred ceEEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 34699999999986 4579999999999999999999999999999999999864 4999999998531
Q ss_pred -cccccEEEEecCCCCCcCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCh----hHHhcCCCCccccCCCCCChhH
Q 000647 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGE 583 (1374)
Q Consensus 510 -~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~~~~~~g~~LSgGq 583 (1374)
.+++.++|+||+|.++..|++||+.++....... ....++++.++++.+++. +..++.+ ..|||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LSgGq 187 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNA--------LGLSGGQ 187 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCCh--------hhCCHHH
Confidence 2456899999999988889999998863211100 011134566778888874 3333332 6899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 584 kQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||++|||||+++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|++++|++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~ 256 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYE 256 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999998875 3689999999999875 6999999985
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=315.84 Aligned_cols=201 Identities=20% Similarity=0.286 Sum_probs=162.0
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecC
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ 1179 (1374)
|+++||+++|+. +++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++......+.+++++||
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 578999999865 5799999999999999999999999999999999999999999999999988765434567999999
Q ss_pred CCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCCh
Q 000647 1180 RPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1374)
Q Consensus 1180 ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSg 1258 (1374)
+|.+|. .|++||+.++.... +. ..+..++++.++++.+++.+..++. ...||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 133 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLR----------KV------PKDEIDERVREVAELLQIEHLLDRK----------PKQLSG 133 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhc----------CC------CHHHHHHHHHHHHHHcCCHHHHhCC----------hhhCCH
Confidence 999985 59999997652100 00 0000123355677777775544332 356999
Q ss_pred hhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--
Q 000647 1259 GEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD-- 1336 (1374)
Q Consensus 1259 GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~-- 1336 (1374)
|||||++| |||++++|+++||||||++||.++.+.+.+.+++
T Consensus 134 G~~qr~~l------------------------------------aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 177 (213)
T cd03301 134 GQRQRVAL------------------------------------GRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQ 177 (213)
T ss_pred HHHHHHHH------------------------------------HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999887775543
Q ss_pred --cCceEEEecCCCCch-hhccceEEEEcC
Q 000647 1337 --MGITFVTSSQRPALI-PFHSLELRLIDG 1363 (1374)
Q Consensus 1337 --~~~TvI~IaHRl~~i-~~~~~~l~l~~g 1363 (1374)
.|+|+|+|+|++..+ .+.++++.|.+|
T Consensus 178 ~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g 207 (213)
T cd03301 178 QRLGTTTIYVTHDQVEAMTMADRIAVMNDG 207 (213)
T ss_pred HHcCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 489999999999765 467888888554
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=328.30 Aligned_cols=201 Identities=25% Similarity=0.322 Sum_probs=166.8
Q ss_pred CEEEeeeEEeCCC--cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccE
Q 000647 1099 SISFSKLDIITPS--QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGI 1174 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~--~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i 1174 (1374)
.|+++||++.|+. .+.+|+|+||+|++||.+||+||||||||||+++|.|+++|.+|+|.+||.++... ...|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 4899999999974 35699999999999999999999999999999999999999999999999998754 2356689
Q ss_pred EEecCCCC--CCCcchHHHhccCCCh---hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccc
Q 000647 1175 FYVPQRPY--TCLGTLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 1249 (1374)
Q Consensus 1175 ~~VpQ~P~--Lf~GTlR~Nl~yp~~~---~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~ 1249 (1374)
++|||+|. ++..|++|||.++... +.+ ..++.+.++++.++|.++.++.
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~-------------------~~~~~~~~~l~~~gL~~~~~~~------- 137 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHE-------------------EMKERVNEALELVGMQDFKERE------- 137 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHH-------------------HHHHHHHHHHHHCCCHhHhhCC-------
Confidence 99999993 5677999999875310 010 0123456788888886655443
Q ss_pred cccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHH
Q 000647 1250 LNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQ 1329 (1374)
Q Consensus 1250 ~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~ 1329 (1374)
...||||||||++| ||||+++|++|||||||++||+.+.+.
T Consensus 138 ---~~~LSgGq~qrv~l------------------------------------Aral~~~p~lLlLDEPt~~LD~~~~~~ 178 (279)
T PRK13650 138 ---PARLSGGQKQRVAI------------------------------------AGAVAMRPKIIILDEATSMLDPEGRLE 178 (279)
T ss_pred ---cccCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 35799999999999 999999999999999999999999987
Q ss_pred HHHHHHh----cCceEEEecCCCCchhhccceEEEEcCC
Q 000647 1330 LYRLAKD----MGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1330 l~~~~~~----~~~TvI~IaHRl~~i~~~~~~l~l~~g~ 1364 (1374)
+.+.+++ .|+|+|+|+|++..+.+.|+++.+.+|+
T Consensus 179 l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~ 217 (279)
T PRK13650 179 LIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQ 217 (279)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 7765432 4899999999998888899999996554
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=320.28 Aligned_cols=197 Identities=21% Similarity=0.255 Sum_probs=162.9
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCCc-------cc
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------DL 511 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~~-------~~ 511 (1374)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. .+
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 588999999986 46799999999999999999999999999999999999986 599999998531 24
Q ss_pred cccEEEEecCCCCCcCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCChhH----HhcCCCCccccCCCCCChhHHHH
Q 000647 512 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQR 586 (1374)
Q Consensus 512 ~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~----~~~~~~~~~~~~g~~LSgGqkQR 586 (1374)
++.++|+||+|.++..|++||+.++....... ....++++.++++.+++.+. .++. ..+||||||||
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~LS~G~~qr 153 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSH--------AFGLSGGQQQR 153 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcC--------cccCCHHHHHH
Confidence 56799999999988899999998753211100 01112455677888887542 2332 26899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 587 lalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++||||++.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .+|+++++++
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~ 219 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLM 219 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999888765 3689999999999876 6999999985
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=322.49 Aligned_cols=211 Identities=26% Similarity=0.295 Sum_probs=165.5
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc-----CCcccE
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCGI 1174 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~-----~~r~~i 1174 (1374)
|+++||++.|++.+.+++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..++++
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999975467999999999999999999999999999999999999999999999999887542 345679
Q ss_pred EEecCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccc
Q 000647 1175 FYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1374)
Q Consensus 1175 ~~VpQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g 1253 (1374)
+||||+|.+|. .|+++|+.++......... ...+. .....++.+.++++.+++.+...+ ..
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~l~~~~l~~~~~~----------~~ 142 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWR--SLFGL------FPKEEKQRALAALERVGLLDKAYQ----------RA 142 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhh--hhccc------CcHHHHHHHHHHHHHcCChhhhCC----------Cc
Confidence 99999999887 6999999765321000000 00000 001113446677887777544322 24
Q ss_pred cCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHH
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL 1333 (1374)
Q Consensus 1254 ~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~ 1333 (1374)
..||||||||++| |||++++|++||||||||+||..+.+.+.+.
T Consensus 143 ~~LS~G~~qrv~l------------------------------------a~al~~~p~llllDEPt~~LD~~~~~~l~~~ 186 (241)
T cd03256 143 DQLSGGQQQRVAI------------------------------------ARALMQQPKLILADEPVASLDPASSRQVMDL 186 (241)
T ss_pred ccCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 6799999999999 9999999999999999999999999877765
Q ss_pred HHh----cCceEEEecCCCCchh-hccceEEEEcCC
Q 000647 1334 AKD----MGITFVTSSQRPALIP-FHSLELRLIDGE 1364 (1374)
Q Consensus 1334 ~~~----~~~TvI~IaHRl~~i~-~~~~~l~l~~g~ 1364 (1374)
+++ .|+|+|+|+|+++.+. +.|+++.+.+|+
T Consensus 187 l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~ 222 (241)
T cd03256 187 LKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222 (241)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 543 4899999999998776 889999996554
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=336.32 Aligned_cols=202 Identities=21% Similarity=0.283 Sum_probs=170.1
Q ss_pred CCCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEE
Q 000647 1097 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176 (1374)
Q Consensus 1097 ~g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~ 1176 (1374)
...|+++||++.|.+ ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+....+++|++
T Consensus 4 ~~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 4 KNFVVLKNITKRFGS-NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred CcEEEEEeEEEEECC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 346999999999964 6699999999999999999999999999999999999999999999999999876544567999
Q ss_pred ecCCCCCCCc-chHHHhccCCCh---hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccccc
Q 000647 1177 VPQRPYTCLG-TLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252 (1374)
Q Consensus 1177 VpQ~P~Lf~G-TlR~Nl~yp~~~---~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~ 1252 (1374)
|||+|.||+. |++|||.|+... ..++ .++.+.++++.++|.++.++.
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~-------------------~~~~v~~~l~~~gl~~~~~r~---------- 133 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEE-------------------RKQRVKEALELVDLAGFEDRY---------- 133 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHH-------------------HHHHHHHHHHHcCCchhhcCC----------
Confidence 9999999975 999999987531 0110 123466788888887665443
Q ss_pred ccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHH
Q 000647 1253 EDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYR 1332 (1374)
Q Consensus 1253 g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~ 1332 (1374)
...||||||||+|| ||||+++|++||||||||+||..+.+.+.+
T Consensus 134 ~~~LSgGq~QRVaL------------------------------------ARaL~~~P~lLLLDEP~s~LD~~~r~~l~~ 177 (351)
T PRK11432 134 VDQISGGQQQRVAL------------------------------------ARALILKPKVLLFDEPLSNLDANLRRSMRE 177 (351)
T ss_pred hhhCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 35799999999999 999999999999999999999999987766
Q ss_pred HHH----hcCceEEEecCCCCc-hhhccceEEEEcCC
Q 000647 1333 LAK----DMGITFVTSSQRPAL-IPFHSLELRLIDGE 1364 (1374)
Q Consensus 1333 ~~~----~~~~TvI~IaHRl~~-i~~~~~~l~l~~g~ 1364 (1374)
.++ +.|+|+|.|+|+++. ..+.|+++.+.+|+
T Consensus 178 ~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~ 214 (351)
T PRK11432 178 KIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGK 214 (351)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 543 348999999999965 57889999996553
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=320.74 Aligned_cols=198 Identities=22% Similarity=0.245 Sum_probs=161.9
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc--C---CccEEEeCCCCc--------
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVGS-------- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~--~---~~G~I~~~g~~~-------- 509 (1374)
..++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 4 KIITSSDVHLFYG-KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred ceEEEEeEEEEEC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 3689999999996 4679999999999999999999999999999999999975 4 599999998531
Q ss_pred cccccEEEEecCCCCCcCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCChh----HHhcCCCCccccCCCCCChhHH
Q 000647 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~----~~~~~~~~~~~~~g~~LSgGqk 584 (1374)
.+++.++|+||+|.++..|+++|+.++....... ....++++.+.++.+++.. ..++. ..+||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--------~~~LS~Gq~ 154 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHES--------ALSLSGGQQ 154 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcC--------cccCCHHHH
Confidence 2356799999999988899999998753211100 0111234566778777642 23332 268999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 585 QRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||++||||++++|+++||||||++||+.+.+.+.+.+++ .+.|+|+|||+++.+. .+|+++++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLT 222 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999988865 2689999999999875 7999999975
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=334.90 Aligned_cols=188 Identities=22% Similarity=0.294 Sum_probs=160.7
Q ss_pred eeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc----------cccccEEEE
Q 000647 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKEIFYV 518 (1374)
Q Consensus 449 ~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~----------~~~~~i~~v 518 (1374)
|+++.|++ .. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+
T Consensus 4 ~l~~~~~~-~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGD-FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECC-EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 78888853 34 4 99999999999999999999999999999999999999999998541 235679999
Q ss_pred ecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000647 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1374)
Q Consensus 519 ~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1374)
||++.++. .|++||+.|+..... ....++++.++++.++|.++.++.+ .+||||||||++|||||+++|
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~--~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LSgGqkqRvalAraL~~~p 150 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRAR--PSERRISFERVIELLGIGHLLGRLP--------GRLSGGEKQRVAIGRALLSSP 150 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccC--hhHHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHHcCC
Confidence 99999886 499999998643211 1112345788999999998888876 689999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 598 KFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 598 ~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+++||||||++||+.+.+.+++.+++ .|+|+|+|||+++.+. .+|++++|++
T Consensus 151 ~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~ 207 (354)
T TIGR02142 151 RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLED 207 (354)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999887764 3899999999999875 6999999986
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=316.41 Aligned_cols=202 Identities=22% Similarity=0.226 Sum_probs=163.6
Q ss_pred EEEeeeEEeCCCc---ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEE
Q 000647 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176 (1374)
Q Consensus 1100 I~f~~V~~~yp~~---~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~ 1176 (1374)
|+++|+++.|++. +++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.. .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~---~~~~i~~ 77 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG---PGPDRGY 77 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc---ccCcEEE
Confidence 4789999999752 679999999999999999999999999999999999999999999999988763 3567999
Q ss_pred ecCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccC
Q 000647 1177 VPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1374)
Q Consensus 1177 VpQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~ 1255 (1374)
|||+|.+|. .|++||+.++.... +. .....++++.++++.+++.+...+. ...
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~ 131 (220)
T cd03293 78 VFQQDALLPWLTVLDNVALGLELQ----------GV------PKAEARERAEELLELVGLSGFENAY----------PHQ 131 (220)
T ss_pred EecccccccCCCHHHHHHHHHHHc----------CC------CHHHHHHHHHHHHHHcCChhhhhCC----------ccc
Confidence 999999987 69999997642100 00 0001123466778888876554433 246
Q ss_pred CChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH
Q 000647 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1335 (1374)
Q Consensus 1256 LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~ 1335 (1374)
||||||||++| ||||+++|+++||||||++||+++.+.+.+.++
T Consensus 132 LSgG~~qrl~l------------------------------------a~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~ 175 (220)
T cd03293 132 LSGGMRQRVAL------------------------------------ARALAVDPDVLLLDEPFSALDALTREQLQEELL 175 (220)
T ss_pred CCHHHHHHHHH------------------------------------HHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999988877654
Q ss_pred h----cCceEEEecCCCCc-hhhccceEEEEcCCCC
Q 000647 1336 D----MGITFVTSSQRPAL-IPFHSLELRLIDGEGN 1366 (1374)
Q Consensus 1336 ~----~~~TvI~IaHRl~~-i~~~~~~l~l~~g~g~ 1366 (1374)
+ .|+|+|+|+|+++. .++.|+++.|.+++|.
T Consensus 176 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 176 DIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred HHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 2 48999999999975 5678999999533553
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=319.70 Aligned_cols=197 Identities=24% Similarity=0.270 Sum_probs=163.4
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCCc--------c
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS--------D 510 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~~--------~ 510 (1374)
.|+++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. .
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 589999999986 46799999999999999999999999999999999999984 899999998541 2
Q ss_pred ccccEEEEecCCCCCcCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCChhH----HhcCCCCccccCCCCCChhHHH
Q 000647 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 585 (1374)
Q Consensus 511 ~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~----~~~~~~~~~~~~g~~LSgGqkQ 585 (1374)
+++.++|+||+|.++..|++||+.++....... ....++++.++++.+++.+. .++. ..+|||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~Gq~q 153 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKP--------GTRLSGGQQQ 153 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCC--------hhhcCHHHHH
Confidence 356799999999988899999998753211100 11123456778888888643 3332 2689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 586 RlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|++||||++.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+ ..+|+++++++
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYR 220 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999888765 378999999999975 57999999985
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=320.40 Aligned_cols=200 Identities=21% Similarity=0.227 Sum_probs=162.9
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc-----CCccEEEeCCCCc--------
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS-------- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~-----~~~G~I~~~g~~~-------- 509 (1374)
..|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 9 ~~l~i~~v~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 9 TVLRTENLNVYYG-SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred eEEEEeeeEEEEC-CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 4699999999985 4579999999999999999999999999999999999986 4799999998531
Q ss_pred cccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHH
Q 000647 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1374)
.++++++|+||+|.++..|+.||+.++...... ....++++.++++.+++.+.++... .....+||||||||++|
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~----~~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGY-KGDMDELVERSLRQAALWDEVKDKL----KQSGLSLSGGQQQRLCI 162 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCc-chHHHHHHHHHHHHhCchhhHHHHh----cCCcccCCHHHHHHHHH
Confidence 235679999999998888999999886432111 1112345667788888754332110 01136899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEec
Q 000647 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLD 648 (1374)
Q Consensus 590 ARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~ 648 (1374)
||||+++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+ ..||++++|+
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999988864 368999999999876 5789999997
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=316.48 Aligned_cols=200 Identities=28% Similarity=0.417 Sum_probs=159.4
Q ss_pred EEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecCC
Q 000647 1101 SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 1180 (1374)
Q Consensus 1101 ~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ~ 1180 (1374)
+++||++.|++ +.+++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.. .|.+++||||+
T Consensus 1 ~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~---~~~~i~~v~q~ 76 (213)
T cd03235 1 EVEDLTVSYGG-HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK---ERKRIGYVPQR 76 (213)
T ss_pred CcccceeEECC-EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHH---HHhheEEeccc
Confidence 36799998875 569999999999999999999999999999999999999999999999987752 35679999999
Q ss_pred CCC---CCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCC
Q 000647 1181 PYT---CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1374)
Q Consensus 1181 P~L---f~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LS 1257 (1374)
|.+ |..|++||+.++...... ..+. .....++.+.++++.+++.+..++. ...||
T Consensus 77 ~~~~~~~~~tv~e~l~~~~~~~~~------~~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS 134 (213)
T cd03235 77 RSIDRDFPISVRDVVLMGLYGHKG------LFRR------LSKADKAKVDEALERVGLSELADRQ----------IGELS 134 (213)
T ss_pred cccccCCCCcHHHHHHhccccccc------cccC------CCHHHHHHHHHHHHHcCCHHHHhCC----------cccCC
Confidence 987 568999999765321000 0000 0001133466788888876544332 35799
Q ss_pred hhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh-
Q 000647 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD- 1336 (1374)
Q Consensus 1258 gGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~- 1336 (1374)
||||||++| ||||+++|+++||||||++||+++.+.+.+.+++
T Consensus 135 gG~~qrv~l------------------------------------a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 178 (213)
T cd03235 135 GGQQQRVLL------------------------------------ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178 (213)
T ss_pred HHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999877765543
Q ss_pred --cCceEEEecCCCCch-hhccceEEEEc
Q 000647 1337 --MGITFVTSSQRPALI-PFHSLELRLID 1362 (1374)
Q Consensus 1337 --~~~TvI~IaHRl~~i-~~~~~~l~l~~ 1362 (1374)
.|+|+|.|+|+++.+ ++.|+++.+.+
T Consensus 179 ~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 207 (213)
T cd03235 179 RREGMTILVVTHDLGLVLEYFDRVLLLNR 207 (213)
T ss_pred HhcCCEEEEEeCCHHHHHHhcCEEEEEcC
Confidence 589999999999776 56899998843
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=321.28 Aligned_cols=202 Identities=21% Similarity=0.218 Sum_probs=163.2
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCCc--------
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~~-------- 509 (1374)
..++++|+++.|+ ++++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 3689999999985 46799999999999999999999999999999999999985 489999998541
Q ss_pred cccccEEEEecCCCCCcCCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHH
Q 000647 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1374)
.+++.++|+||+|.++..|++||+.++...... .....++.+.++++.+++.+.+.... ......||||||||++
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~----~~~~~~LS~G~~qrv~ 160 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKL----NKSALGLSGGQQQRLC 160 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHh----cCCcccCCHHHHHHHH
Confidence 234679999999998889999999875321110 00112345667888888853222110 0113689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 589 lARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||||+++|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .+|++++|+.
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~ 224 (259)
T PRK14260 161 IARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFST 224 (259)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEec
Confidence 99999999999999999999999999999988865 3689999999999875 6999999973
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=322.56 Aligned_cols=199 Identities=21% Similarity=0.259 Sum_probs=165.0
Q ss_pred CCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCCc-------
Q 000647 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS------- 509 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~~------- 509 (1374)
.+.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 23 ~~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 45799999999985 46799999999999999999999999999999999999984 899999998541
Q ss_pred -cccccEEEEecCCCCCcCCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCChhH----HhcCCCCccccCCCCCChhH
Q 000647 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGE 583 (1374)
Q Consensus 510 -~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~----~~~~~~~~~~~~g~~LSgGq 583 (1374)
.+++.++|+||++.++..|++||+.++...... .....++++.++++.+++.+. .++. ..+|||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~Gq 173 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHEN--------AFGLSGGQ 173 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCC--------cccCCHHH
Confidence 235789999999998888999999875321110 001123456778888888643 2332 36899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 584 kQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|||++||||++++|+++||||||++||+.+...+.+.+++ .+.|+|++||+++.+ ..+|+++++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 242 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYM 242 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 9999999999999999999999999999999999888764 378999999999987 47999999985
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=335.65 Aligned_cols=200 Identities=32% Similarity=0.442 Sum_probs=172.1
Q ss_pred CCcEEEeeeEEEcCC------C----CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC---
Q 000647 442 ANYIEFSGVKVVTPT------G----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--- 508 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~------~----~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~--- 508 (1374)
.+.++++|+++.|.. + ..+++|+||++++||+++|||+||||||||.|+|+|+.+|++|+|.++|.+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 456889999998863 1 368999999999999999999999999999999999999999999999864
Q ss_pred -----ccccccEEEEecCCCC---CcCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCChh-HHhcCCCCccccCCCC
Q 000647 509 -----SDLNKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDE 578 (1374)
Q Consensus 509 -----~~~~~~i~~v~Q~p~l---~~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~-~~~~~~~~~~~~~g~~ 578 (1374)
...++++-+|+|+|+- +..||+++|..|....... .....+++.++++.++|.. +.+++| ++
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP--------~e 429 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP--------HE 429 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc--------hh
Confidence 1345789999999984 3479999998876532211 1223346888999999987 789998 68
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 579 LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||||||||+||||||..+|+++|+|||||+||+.+...+.+.+++ .|.|+|+||||+..++ .||+|.+|.+
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~ 505 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYD 505 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEEC
Confidence 999999999999999999999999999999999999999888754 5999999999999997 6999999986
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=321.05 Aligned_cols=198 Identities=24% Similarity=0.258 Sum_probs=163.3
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEE
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFY 1176 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~ 1176 (1374)
.|+++||++.|++ +++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ...|+.++|
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSFG-KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 4889999999865 5699999999999999999999999999999999999999999999999988764 244668999
Q ss_pred ecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCc-hhhhhhccCCccccccccC
Q 000647 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLEREEVGWDANLNWEDI 1255 (1374)
Q Consensus 1177 VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~-~~v~~~~~Gldt~~~~g~~ 1255 (1374)
+||+|.+|+.|+++|+.++..... ..++++.++++.+++. ++..+ ....
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~--------------------~~~~~~~~~l~~~~l~~~~~~~----------~~~~ 131 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKG--------------------EKNVDVEYYLSIVGLNKEYATR----------DVKN 131 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcC--------------------cHHHHHHHHHHHcCCCHHHhhC----------Cccc
Confidence 999999999999999976421100 0123455677777763 22221 2457
Q ss_pred CChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH
Q 000647 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1335 (1374)
Q Consensus 1256 LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~ 1335 (1374)
||||||||++| |||++++|+++||||||++||.++.+.+.+.++
T Consensus 132 LS~G~~qrl~l------------------------------------a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 175 (241)
T PRK14250 132 LSGGEAQRVSI------------------------------------ARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175 (241)
T ss_pred CCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999987776554
Q ss_pred h----cCceEEEecCCCCch-hhccceEEEEcC
Q 000647 1336 D----MGITFVTSSQRPALI-PFHSLELRLIDG 1363 (1374)
Q Consensus 1336 ~----~~~TvI~IaHRl~~i-~~~~~~l~l~~g 1363 (1374)
+ .|+|+|+|+|+++.+ .+.|+++.+.+|
T Consensus 176 ~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 176 KLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred HHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 3 489999999999765 478999999654
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=320.72 Aligned_cols=202 Identities=22% Similarity=0.263 Sum_probs=163.4
Q ss_pred CCCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCCc------
Q 000647 441 EANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS------ 509 (1374)
Q Consensus 441 ~~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~~------ 509 (1374)
....|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 17 ~~~~l~~~nl~~~~~-~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 17 DHSVFEVEGVKVFYG-GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CCceEEEeeEEEEeC-CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 345899999999986 46799999999999999999999999999999999999863 699999998541
Q ss_pred --cccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHH
Q 000647 510 --DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1374)
Q Consensus 510 --~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRl 587 (1374)
.+++.++|+||++.++..|+.||+.++...... ....++.+.++++.+++.+.+.... ......||||||||+
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~----~~~~~~LSgGq~qrv 170 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGY-KGNLDELVEDSLRRAAIWEEVKDKL----KEKGTALSGGQQQRL 170 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCc-hHHHHHHHHHHHHHcccchhhHHHh----cCCcccCCHHHHHHH
Confidence 235689999999998888999999875321110 0112344567788888753322100 011368999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEec
Q 000647 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLD 648 (1374)
Q Consensus 588 alARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~ 648 (1374)
+|||||+++|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+ ..+|++++|+
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 999999999999999999999999999999998875 368999999999887 4799999997
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=300.85 Aligned_cols=160 Identities=38% Similarity=0.642 Sum_probs=144.7
Q ss_pred EEEeeeEEEcCCC-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEE
Q 000647 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1374)
Q Consensus 445 i~~~~v~~~~~~~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~ 517 (1374)
++++|+++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4689999998654 379999999999999999999999999999999999999999999999854 123567999
Q ss_pred EecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCC
Q 000647 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1374)
Q Consensus 518 v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p 597 (1374)
+||+|.++..|+.||+ ||||||||++||||++++|
T Consensus 81 ~~~~~~~~~~t~~e~l---------------------------------------------LS~G~~~rl~la~al~~~p 115 (171)
T cd03228 81 VPQDPFLFSGTIRENI---------------------------------------------LSGGQRQRIAIARALLRDP 115 (171)
T ss_pred EcCCchhccchHHHHh---------------------------------------------hCHHHHHHHHHHHHHhcCC
Confidence 9999988888888876 8999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHhhccEEEEecC
Q 000647 598 KFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 598 ~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+++||||||++||+.+...+.+.+++ .++|+|++||+++.+..+|+++++++
T Consensus 116 ~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~ 169 (171)
T cd03228 116 PILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDD 169 (171)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcC
Confidence 99999999999999999999888865 36899999999999988999999975
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=315.41 Aligned_cols=201 Identities=25% Similarity=0.340 Sum_probs=160.2
Q ss_pred EEeeeEEeCCCc-ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEe
Q 000647 1101 SFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYV 1177 (1374)
Q Consensus 1101 ~f~~V~~~yp~~-~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~V 1177 (1374)
+++||++.|++. +.+|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ...+++|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999988752 5799999999999999999999999999999999999999999999999988654 2345679999
Q ss_pred cCCC--CCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccC
Q 000647 1178 PQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1374)
Q Consensus 1178 pQ~P--~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~ 1255 (1374)
||+| .++..|+++|+.++.... +. .....++.+.++++.+++.+.+++. ...
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~ 134 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENL----------GL------PEEEIEERVEEALELVGLEGLRDRS----------PFT 134 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHc----------CC------CHHHHHHHHHHHHHHcCcHhhhcCC----------ccc
Confidence 9999 467889999997542100 00 0000122355677777775444332 357
Q ss_pred CChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH
Q 000647 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1335 (1374)
Q Consensus 1256 LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~ 1335 (1374)
||||||||++| ||||+++|+++||||||++||.++.+.+.+.++
T Consensus 135 LSgG~~qrv~l------------------------------------aral~~~p~llllDEPt~~LD~~~~~~~~~~l~ 178 (211)
T cd03225 135 LSGGQKQRVAI------------------------------------AGVLAMDPDILLLDEPTAGLDPAGRRELLELLK 178 (211)
T ss_pred CCHHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999988776554
Q ss_pred h---cCceEEEecCCCCchh-hccceEEEEcC
Q 000647 1336 D---MGITFVTSSQRPALIP-FHSLELRLIDG 1363 (1374)
Q Consensus 1336 ~---~~~TvI~IaHRl~~i~-~~~~~l~l~~g 1363 (1374)
+ .|+|+|+|+|++..+. +.|+++.+.+|
T Consensus 179 ~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 179 KLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 3 4899999999997765 58999998655
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=322.96 Aligned_cols=198 Identities=28% Similarity=0.427 Sum_probs=164.1
Q ss_pred cEEEeeeEEEcCC--------CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc------
Q 000647 444 YIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------ 509 (1374)
Q Consensus 444 ~i~~~~v~~~~~~--------~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~------ 509 (1374)
.|+++||++.|++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 5889999999974 46899999999999999999999999999999999999999999999998641
Q ss_pred ---cccccEEEEecCCC--CC-cCCHHHHhcCCCCCC-cccCCCCHHHHHHHHHHcCCh-hHHhcCCCCccccCCCCCCh
Q 000647 510 ---DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSL 581 (1374)
Q Consensus 510 ---~~~~~i~~v~Q~p~--l~-~~Tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~~~~~g~~LSg 581 (1374)
.+++.++|+||++. ++ ..|+.+|+.++.... .........++.++++.+++. +..++.+ ..|||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~~LS~ 154 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRP--------PQLSG 154 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCC--------ccCCh
Confidence 13568999999983 33 469999986542110 000111234578889999996 4566544 68999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 582 GqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||||++|||||+++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|+++++++
T Consensus 155 Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~ 227 (268)
T PRK10419 155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDN 227 (268)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999998887753 3889999999999986 6999999975
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=316.21 Aligned_cols=199 Identities=25% Similarity=0.304 Sum_probs=162.0
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc-----CCcccE
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCGI 1174 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~-----~~r~~i 1174 (1374)
|+++||++.|+..+.+|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..|+++
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 789999999965578999999999999999999999999999999999999999999999999887652 246689
Q ss_pred EEecCCCCC-CCcchHHHhccCCC---hhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc
Q 000647 1175 FYVPQRPYT-CLGTLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1374)
Q Consensus 1175 ~~VpQ~P~L-f~GTlR~Nl~yp~~---~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~ 1250 (1374)
+|+||+|.+ +..|++||+.++.. .++++ ..+.+.++++.+++.....+.
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~-------- 134 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDD-------------------IRRRVSAALDKVGLLDKAKNF-------- 134 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHH-------------------HHHHHHHHHHHcCChhhhhCC--------
Confidence 999999997 46799999986521 00000 112345667777775443332
Q ss_pred ccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHH
Q 000647 1251 NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL 1330 (1374)
Q Consensus 1251 ~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l 1330 (1374)
...||+|||||++| |||++++|+++||||||++||.++.+.+
T Consensus 135 --~~~LS~G~~qrv~l------------------------------------aral~~~p~llllDEPt~~LD~~~~~~l 176 (222)
T PRK10908 135 --PIQLSGGEQQRVGI------------------------------------ARAVVNKPAVLLADEPTGNLDDALSEGI 176 (222)
T ss_pred --chhCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCCCcCCHHHHHHH
Confidence 35799999999999 9999999999999999999999998877
Q ss_pred HHHHHh---cCceEEEecCCCCchh-hccceEEEEcC
Q 000647 1331 YRLAKD---MGITFVTSSQRPALIP-FHSLELRLIDG 1363 (1374)
Q Consensus 1331 ~~~~~~---~~~TvI~IaHRl~~i~-~~~~~l~l~~g 1363 (1374)
.+++++ .+.|+|+|+|+++.+. +.|+++.+.+|
T Consensus 177 ~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (222)
T PRK10908 177 LRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDG 213 (222)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 665542 4899999999998765 57888888544
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=292.62 Aligned_cols=197 Identities=27% Similarity=0.360 Sum_probs=166.7
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~ 517 (1374)
+|+.+|+++.- .++.+++++||++++||.++|+||||+|||||+|+|+|...|++|++.++|.+ .++.++-+.
T Consensus 1 mi~a~nls~~~-~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSL-AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEe-ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 37889999876 47889999999999999999999999999999999999999999999999976 234577899
Q ss_pred EecCCCC-CcCCHHHHhcCCCCCCcccCCC-CHHH-HHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 518 VPQRPYT-AVGTLRDQLIYPLTSDQEVEPL-THGG-MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 518 v~Q~p~l-~~~Tv~eni~~~~~~~~~~~~~-~~~~-~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
+||+..+ |.-|++|.+.+|......-... .+++ ..+++..+++..+..+.- ..||||||||+.+||+|.
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y--------~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY--------RTLSGGEQQRVQLARVLA 151 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch--------hhcCchHHHHHHHHHHHH
Confidence 9999765 6789999999876433211111 2222 578899999999998854 589999999999999997
Q ss_pred c------CCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 595 H------KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 595 ~------~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+ ++++|+||||||+||......+++..++ .|..|+.|-||+++.. |||+|++|.+
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~ 216 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQ 216 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeC
Confidence 5 4569999999999999999998887764 5899999999999974 8999999975
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=302.16 Aligned_cols=162 Identities=29% Similarity=0.379 Sum_probs=145.1
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-c-------cccccEE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-------DLNKEIF 516 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-~-------~~~~~i~ 516 (1374)
++++|+++.|+ ++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++
T Consensus 1 i~~~~l~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEEC-CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 46899999985 4679999999999999999999999999999999999999999999999853 1 2346899
Q ss_pred EEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000647 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1374)
Q Consensus 517 ~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1374)
|+||+|.++. .|++||+.+. ||||||||++||||+++
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred EEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHC
Confidence 9999998775 5999988642 89999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh---c-CCEEEEEccChhhHh-hccEEEEecC
Q 000647 596 KPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 596 ~p~illLDEptsaLD~~~~~~i~~~l~~---~-~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
+|+++||||||++||+.+...+.+.+++ . ++|+|++||+++.+. .+|+++++++
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 176 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRD 176 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeC
Confidence 9999999999999999999999887754 3 789999999999987 7999999975
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK12369 putative transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=307.19 Aligned_cols=283 Identities=15% Similarity=0.181 Sum_probs=247.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 109 ALVGIVVLRTALSNRLAKVQGFLFRAAFLR-------RVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTK 181 (1374)
Q Consensus 109 ~~~~l~~~~t~ls~~~~~~~~~~~~al~~~-------~~~~f~~~l~~~~~~~~~~~~~~~~~~yl~~~l~~~~R~~lt~ 181 (1374)
+++++.++.+.+++.++.|+++|||+|+++ |.+.|++.+..+.+++++..++.++..|++++++++||+|||+
T Consensus 21 ~~i~l~l~~v~~~v~~n~w~~~fy~aL~~~~~~~~~~~~~~f~~~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~ 100 (326)
T PRK12369 21 FILLSLWYQVSLNVAINEWYGDFYDLLQKAKIEPNNHTAGDFWASILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTF 100 (326)
T ss_pred HHHHHHHHHHHHhhhhhHHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788999999999999999999999996 7999999999998888888888999999999999999999999
Q ss_pred HHHHHHhhccccccccccCCCCCChhHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhhhHH
Q 000647 182 LIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY----------ASPKYV 251 (1374)
Q Consensus 182 ~l~~~yl~~~~~y~~~~~d~~~~npdqRit~Di~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~~----------~~~~l~ 251 (1374)
++.++|+. .++.+|||||||+||++.|++...++..+++.++++.+.|+..|+.. ..|+++
T Consensus 101 ~~l~~wl~---------~~~~iDNPDQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~l 171 (326)
T PRK12369 101 SYLKFWRN---------KRDNIEGSSQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSL 171 (326)
T ss_pred HHHHHHhc---------CCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchH
Confidence 99999996 23568999999999999999999999999999999999987666531 356777
Q ss_pred HHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 252 FWI-LAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHD 330 (1374)
Q Consensus 252 ~~~-l~~~~~~~~i~~~~~~~l~~l~~~~q~~e~~~r~~~~~ir~~~E~Ia~~~ge~~e~~~l~~~f~~~~~~~~~~~~~ 330 (1374)
+|+ ++|.++++.+++++|+|+.+++.++|+.|||||+.+.|+|+|+|+ | .|.+.++++|.++.+++++.++.
T Consensus 172 v~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~----~E~~~l~~~f~~v~~n~~~~~~~ 244 (326)
T PRK12369 172 VWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---Y----AKPETLIELFTGLRFNYFRLFLH 244 (326)
T ss_pred HHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---h----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 776 567777888889999999999999999999999999999999998 3 78889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000647 331 HWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYA 410 (1374)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 410 (1374)
..++++++..+. +++..+++++++|.|++|.+ ++|..+.. ...+..+..+++.++.++.++.++.+..
T Consensus 245 ~~~l~~~~~~y~-~~~~i~p~li~aP~y~sg~i-----~lG~l~Q~------~~AF~~v~~als~~v~~y~~la~~~A~~ 312 (326)
T PRK12369 245 YGYFNIWLISFS-QMMVIVPYLIMAPGLFAGVI-----TLGVLMQI------SNAFSQVRSSFSVFIRNWTTITELRSIY 312 (326)
T ss_pred HHhHHHHHHHHH-HHHHHHHHHHHHHHHHhCCc-----chhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888664 57778888899999998877 56654332 3456677788999999999999999999
Q ss_pred HHHHHHHhh
Q 000647 411 DRIHELMVI 419 (1374)
Q Consensus 411 ~Ri~~~~~~ 419 (1374)
+|+.++.+.
T Consensus 313 ~RL~~f~~~ 321 (326)
T PRK12369 313 KRLKEFEKN 321 (326)
T ss_pred HHHHHHHHH
Confidence 999988654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=314.16 Aligned_cols=200 Identities=22% Similarity=0.273 Sum_probs=162.6
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc-cCCcccEEEec
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVP 1178 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~-~~~r~~i~~Vp 1178 (1374)
|+++||++.|++ .++++|+||+|++| .++|+||||||||||+++|.|+++|.+|+|.++|.++... ..++++++++|
T Consensus 1 i~~~~~~~~~~~-~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYGK-KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEECC-EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 578999998865 46999999999999 9999999999999999999999999999999999988754 23467899999
Q ss_pred CCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCC
Q 000647 1179 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1374)
Q Consensus 1179 Q~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LS 1257 (1374)
|+|.+|.+ |++||+.++.... +. ......+.+.++++.+++.+..+.. ...||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS 132 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLK----------GI------PSKEVKARVDEVLELVNLGDRAKKK----------IGSLS 132 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHh----------CC------CHHHHHHHHHHHHHHCCCHHHHhCc----------hhhCC
Confidence 99999986 9999997532100 00 0000123456778888876543322 35699
Q ss_pred hhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh-
Q 000647 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD- 1336 (1374)
Q Consensus 1258 gGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~- 1336 (1374)
+|||||++| ||||+++|+++||||||++||.++.+.+.+.+++
T Consensus 133 ~G~~qrv~l------------------------------------a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 176 (211)
T cd03264 133 GGMRRRVGI------------------------------------AQALVGDPSILIVDEPTAGLDPEERIRFRNLLSEL 176 (211)
T ss_pred HHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999888776654
Q ss_pred -cCceEEEecCCCCch-hhccceEEEEcC
Q 000647 1337 -MGITFVTSSQRPALI-PFHSLELRLIDG 1363 (1374)
Q Consensus 1337 -~~~TvI~IaHRl~~i-~~~~~~l~l~~g 1363 (1374)
.+.|+|+|+|+++.+ .+.|+++.+.+|
T Consensus 177 ~~~~tii~vsH~~~~~~~~~d~i~~l~~g 205 (211)
T cd03264 177 GEDRIVILSTHIVEDVESLCNQVAVLNKG 205 (211)
T ss_pred hCCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 368999999999877 578999999654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=331.49 Aligned_cols=198 Identities=19% Similarity=0.278 Sum_probs=162.3
Q ss_pred cEEEeeeEEEcCC---CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc----CCccEEEeCCCCc------c
Q 000647 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----LVSGHIAKPGVGS------D 510 (1374)
Q Consensus 444 ~i~~~~v~~~~~~---~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~----~~~G~I~~~g~~~------~ 510 (1374)
.|+++|+++.|+. ...+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.+. +
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999863 3469999999999999999999999999999999999987 5899999998641 1
Q ss_pred c----cccEEEEecCCCC---CcCCHHHHhcCCCCC---Ccc---cCCCCHHHHHHHHHHcCChh---HHhcCCCCcccc
Q 000647 511 L----NKEIFYVPQRPYT---AVGTLRDQLIYPLTS---DQE---VEPLTHGGMVELLKNVDLEY---LLDRYPPEKEIN 574 (1374)
Q Consensus 511 ~----~~~i~~v~Q~p~l---~~~Tv~eni~~~~~~---~~~---~~~~~~~~~~~~l~~~~L~~---~~~~~~~~~~~~ 574 (1374)
+ ++.|+||||+|.. +..|+.+|+..+... ... ......+++.++++.++|.+ ..++.|
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p------ 156 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP------ 156 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc------
Confidence 1 2479999999963 236899998653110 000 00112356788999999974 345666
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 575 ~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+++ .|.|+|+||||++.+. .+|++++|++
T Consensus 157 --~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 157 --YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred --hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 68999999999999999999999999999999999999999888764 4899999999999985 6999999975
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=319.06 Aligned_cols=202 Identities=21% Similarity=0.215 Sum_probs=163.1
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCC-c-------
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-S------- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~-~------- 509 (1374)
..|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+ .
T Consensus 5 ~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 5 IILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred ceEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 3689999999985 56799999999999999999999999999999999999763 48999999854 1
Q ss_pred cccccEEEEecCCCCCcCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHH
Q 000647 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1374)
..++.++|+||+|.++..|++||+.++....... ....++++.++++.+++.+.+.... ......||||||||++
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~----~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRL----HDSALSLSGGQQQRLC 159 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHh----hcChhhCCHHHHHHHH
Confidence 2346799999999988889999998763221110 1112345677888888754221100 0113689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 589 lARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||||++.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|+++++++
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~ 223 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYL 223 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEEC
Confidence 99999999999999999999999999999888764 3689999999999885 7999999976
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=321.28 Aligned_cols=211 Identities=23% Similarity=0.293 Sum_probs=161.8
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc---CCcccEEE
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIFY 1176 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~---~~r~~i~~ 1176 (1374)
|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..+.+++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGG-LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECC-EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 478999999875 56999999999999999999999999999999999999999999999999887652 23457999
Q ss_pred ecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccC
Q 000647 1177 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1374)
Q Consensus 1177 VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~ 1255 (1374)
|||+|.+|.+ |++||+.++....... ...+. . .........+.+.++++.+++.....+ ....
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~-~~~~~--~---~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~ 143 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGS-GLLLA--R---ARREEREARERAEELLERVGLADLADR----------PAGE 143 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhcccc-ccccc--c---ccccHHHHHHHHHHHHHHcCccchhhC----------Chhh
Confidence 9999999987 9999997653110000 00000 0 000000012235566777666433222 2357
Q ss_pred CChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH
Q 000647 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1335 (1374)
Q Consensus 1256 LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~ 1335 (1374)
||||||||++| ||||+++|+++||||||++||.++.+.+.+.++
T Consensus 144 LSgG~~qrv~l------------------------------------a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 187 (236)
T cd03219 144 LSYGQQRRLEI------------------------------------ARALATDPKLLLLDEPAAGLNPEETEELAELIR 187 (236)
T ss_pred CCHHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999988777654
Q ss_pred h---cCceEEEecCCCCch-hhccceEEEEcC
Q 000647 1336 D---MGITFVTSSQRPALI-PFHSLELRLIDG 1363 (1374)
Q Consensus 1336 ~---~~~TvI~IaHRl~~i-~~~~~~l~l~~g 1363 (1374)
+ .|+|+|+|+|+++.+ .+.|+++.+.+|
T Consensus 188 ~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G 219 (236)
T cd03219 188 ELRERGITVLLVEHDMDVVMSLADRVTVLDQG 219 (236)
T ss_pred HHHHCCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 3 589999999999876 568888888554
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=313.41 Aligned_cols=202 Identities=22% Similarity=0.256 Sum_probs=162.3
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccc--c--cCCcccEE
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE--E--AGSGCGIF 1175 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~--~--~~~r~~i~ 1175 (1374)
|+++||++.|++ +++++++||+|+|||.++|+||||||||||+++|.|+++|.+|+|.++|.++.. . ...+++++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 478999999976 579999999999999999999999999999999999999999999999998843 1 23466899
Q ss_pred EecCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccccccc
Q 000647 1176 YVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1374)
Q Consensus 1176 ~VpQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~ 1254 (1374)
|+||+|.+|. .|++||+.++..... +. .....++.+.++++.+++...+.+. ..
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~---------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~ 134 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVK---------GM------SKAEAEERALELLEKVGLADKADAY----------PA 134 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhc---------CC------CHHHHHHHHHHHHHHcCCHhHhhhC----------cc
Confidence 9999999986 699999976421000 00 0000122355677777775544332 35
Q ss_pred CCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHH
Q 000647 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1334 (1374)
Q Consensus 1255 ~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~ 1334 (1374)
.||+|||||++| |||++++|+++||||||++||+++.+.+.+.+
T Consensus 135 ~LS~G~~qrv~l------------------------------------a~al~~~p~llllDEP~~~LD~~~~~~l~~~l 178 (213)
T cd03262 135 QLSGGQQQRVAI------------------------------------ARALAMNPKVMLFDEPTSALDPELVGEVLDVM 178 (213)
T ss_pred ccCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 799999999999 99999999999999999999999998877765
Q ss_pred Hh---cCceEEEecCCCCch-hhccceEEEEcC
Q 000647 1335 KD---MGITFVTSSQRPALI-PFHSLELRLIDG 1363 (1374)
Q Consensus 1335 ~~---~~~TvI~IaHRl~~i-~~~~~~l~l~~g 1363 (1374)
++ .|+|+|.++|+++.+ ++.++++.+.+|
T Consensus 179 ~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g 211 (213)
T cd03262 179 KDLAEEGMTMVVVTHEMGFAREVADRVIFMDDG 211 (213)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 43 489999999999877 578999999655
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=319.14 Aligned_cols=205 Identities=23% Similarity=0.273 Sum_probs=163.9
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCC-----CCCCCeEecCCCcccccc----CC
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLW-----PVVSGSLTKPSQHIDEEA----GS 1170 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~-----~~~~G~I~idg~dI~~~~----~~ 1170 (1374)
|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|++ +|.+|+|.++|.++...+ ..
T Consensus 1 i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGD-KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 578999999965 46999999999999999999999999999999999999 999999999999886542 34
Q ss_pred cccEEEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc
Q 000647 1171 GCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1374)
Q Consensus 1171 r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~ 1250 (1374)
+++++|+||+|.+|..|++||+.++.... +. . .....++.+.++++.+++.+...+.++
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~----------~~----~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 138 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLH----------GI----K-LKEELDERVEEALRKAALWDEVKDRLH------ 138 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhc----------CC----C-cHHHHHHHHHHHHHHcCCChHHhccCC------
Confidence 56899999999999889999997653100 00 0 000012345677888777654333210
Q ss_pred ccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHH
Q 000647 1251 NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL 1330 (1374)
Q Consensus 1251 ~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l 1330 (1374)
...||||||||++| ||||+++|+++||||||++||.++.+.+
T Consensus 139 --~~~LSgG~~qrv~l------------------------------------a~al~~~p~llllDEPt~~LD~~~~~~l 180 (227)
T cd03260 139 --ALGLSGGQQQRLCL------------------------------------ARALANEPEVLLLDEPTSALDPISTAKI 180 (227)
T ss_pred --cccCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 35799999999999 9999999999999999999999999888
Q ss_pred HHHHHh--cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1331 YRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1331 ~~~~~~--~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
.+.+++ ..+|+|+|+|+++.+ .+.|+++.+.+|+
T Consensus 181 ~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 217 (227)
T cd03260 181 EELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGR 217 (227)
T ss_pred HHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCE
Confidence 776543 138999999999765 5789999996654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=321.79 Aligned_cols=198 Identities=21% Similarity=0.258 Sum_probs=163.6
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCC-------cc
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------SD 510 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~-------~~ 510 (1374)
..++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..
T Consensus 20 ~~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 20 PAMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred cEEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4789999999996 57899999999999999999999999999999999999986 69999999853 12
Q ss_pred ccccEEEEecCCCCCcCCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCChhHH----hcCCCCccccCCCCCChhHHH
Q 000647 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLL----DRYPPEKEINWGDELSLGEQQ 585 (1374)
Q Consensus 511 ~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~----~~~~~~~~~~~g~~LSgGqkQ 585 (1374)
+++.++|+||+|.++..|+++|+.++...... ......+.+.++++.+++.+.. ++. ..+|||||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--------~~~LSgGq~q 170 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDS--------PFRLSGGQQQ 170 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCC--------cccCCHHHHH
Confidence 45689999999998889999999875321110 0001112345678888886432 222 3689999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhc--CCEEEEEccChhhHh-hccEEEEecC
Q 000647 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 586 RlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~~--~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|++|||||+++|+++||||||++||+.+.+.+++.+++. ++|+|+|||+++.+. .+|++++|++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~ 237 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFD 237 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999887652 689999999999865 7999999986
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=315.65 Aligned_cols=181 Identities=22% Similarity=0.292 Sum_probs=151.4
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-ccccccEEEEecCCCCCc-CCHHHHhcCCCC
Q 000647 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRPYTAV-GTLRDQLIYPLT 538 (1374)
Q Consensus 461 l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-~~~~~~i~~v~Q~p~l~~-~Tv~eni~~~~~ 538 (1374)
++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .......+|+||+|.++. .|++||+.++..
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999864 122234689999998876 699999987521
Q ss_pred C--CcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 000647 539 S--DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616 (1374)
Q Consensus 539 ~--~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~ 616 (1374)
. .........+++.++++.+++.+..++.+ ..||||||||++|||||+++|+++||||||++||+.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 152 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRP--------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN 152 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHH
Confidence 1 00000112335678899999988777765 6899999999999999999999999999999999999999
Q ss_pred HHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 617 FCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 617 i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+.+.+++ .|+|+|+|||+++.+ ..+|+++++++
T Consensus 153 l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~ 190 (230)
T TIGR01184 153 LQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTN 190 (230)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeC
Confidence 9887754 388999999999986 47999999985
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=317.22 Aligned_cols=185 Identities=25% Similarity=0.311 Sum_probs=152.8
Q ss_pred CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----ccccccEEEEe-cCCCCC-cCCH
Q 000647 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP-QRPYTA-VGTL 529 (1374)
Q Consensus 457 ~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~~~~~~i~~v~-Q~p~l~-~~Tv 529 (1374)
.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+| |++.++ ..|+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 4679999999999999999999999999999999999999999999998853 12456899998 556665 4699
Q ss_pred HHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 000647 530 RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609 (1374)
Q Consensus 530 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaL 609 (1374)
+||+.+.............+++.++++.+++.+..++.+ ..||||||||++||||++++|+++||||||++|
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 184 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPV--------RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL 184 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 999976422111001112234667888899987776654 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 610 TTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 610 D~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|+.+.+.+.+.+++ .++|+|++||+++.+ ..+|+++++++
T Consensus 185 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 229 (236)
T cd03267 185 DVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDK 229 (236)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 99999999988764 278999999999987 46999999975
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=305.56 Aligned_cols=186 Identities=20% Similarity=0.252 Sum_probs=157.8
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-cc-cccEEEEecCC
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-DL-NKEIFYVPQRP 522 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~-~~-~~~i~~v~Q~p 522 (1374)
++++|+++.|++ +.+++ +||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .. ++.++|++|++
T Consensus 2 l~~~~l~~~~~~-~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 2 LSLHQLQFNIEQ-KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred eEEEEeeEEECC-cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCc
Confidence 789999999853 55555 9999999999999999999999999999999999999999998651 11 34699999987
Q ss_pred CC-CcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000647 523 YT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1374)
Q Consensus 523 ~l-~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ill 601 (1374)
.+ +..|++||+.++.... ..++++.++++.+++.+..++.+ .+||||||||++||||++++|+++|
T Consensus 80 ~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIY-----NSAETLYAAIHYFKLHDLLDEKC--------YSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred CCCccCCHHHHHHHHHHhc-----ccHHHHHHHHHHcCCHhhhccCh--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 55 5679999998753221 12456778899999988777654 6899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHH---hcCCEEEEEccChhhHhhccEEE
Q 000647 602 LDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVAFHDVVL 645 (1374)
Q Consensus 602 LDEptsaLD~~~~~~i~~~l~---~~~~TiI~vtH~~~~~~~~d~il 645 (1374)
|||||++||+.+.+.+.+.++ +.+.|+|++||+++.++.+|-+.
T Consensus 147 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999988775 35899999999999998887653
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=317.83 Aligned_cols=199 Identities=21% Similarity=0.248 Sum_probs=164.7
Q ss_pred CCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCCc-------
Q 000647 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS------- 509 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~~------- 509 (1374)
.+.|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 14 ~~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYG-GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 46799999999986 45799999999999999999999999999999999999875 799999987531
Q ss_pred ---cccccEEEEecCCCCCcCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCChh----HHhcCCCCccccCCCCCCh
Q 000647 510 ---DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSL 581 (1374)
Q Consensus 510 ---~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~----~~~~~~~~~~~~~g~~LSg 581 (1374)
.+++.++|+||+|.++.+|++||+.++....... ....++++.++++.+++.+ ..++. ...|||
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~ 164 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDL--------AFNLSG 164 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCC--------cccCCH
Confidence 2356799999999998889999998753211100 0112356677888888743 23332 268999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 582 GqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+++ .+.|+|+|||+++.+. .+|+++++++
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~ 235 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYM 235 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999888764 3689999999999884 7999999975
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=319.40 Aligned_cols=202 Identities=20% Similarity=0.239 Sum_probs=163.9
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCC-----ccEEEeCCCCc--------
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVGS-------- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~-----~G~I~~~g~~~-------- 509 (1374)
+.|+++|+++.|+ +..+++|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 6 ~~l~~~nl~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYD-TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeC-CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 4699999999985 457999999999999999999999999999999999999985 89999988541
Q ss_pred cccccEEEEecCCCCCcCCHHHHhcCCCCCCcc-cCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHH
Q 000647 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1374)
.+++.++|+||++.++..|++||+.++...... .....++++.++++.+++.+.++... + ....+||||||||++
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~---~~~~~LSgGq~qrv~ 160 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKI-H---KSALDLSGGQQQRLC 160 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHh-c---CCcccCCHHHHHHHH
Confidence 235679999999988889999999864211100 00011345677888998864332110 0 012689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 589 lARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||+++++|+++||||||++||+.+.+.+++.+++ .+.|+|+|||+++.+. .+|++++|++
T Consensus 161 laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~ 226 (261)
T PRK14258 161 IARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKG 226 (261)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEcc
Confidence 99999999999999999999999999999887764 4899999999999875 7999999986
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=317.49 Aligned_cols=197 Identities=22% Similarity=0.321 Sum_probs=160.9
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-----c-c-------
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S-D------- 510 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-----~-~------- 510 (1374)
.++++|+++.|+ +..+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ . .
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYG-GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeC-CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 589999999996 4578999999999999999999999999999999999999999999998753 1 0
Q ss_pred --ccccEEEEecCCCC---CcCCHHHHhcCCCC-CCcccCCCCHHHHHHHHHHcCCh-hHHhcCCCCccccCCCCCChhH
Q 000647 511 --LNKEIFYVPQRPYT---AVGTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGE 583 (1374)
Q Consensus 511 --~~~~i~~v~Q~p~l---~~~Tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~~~~~g~~LSgGq 583 (1374)
.++.++|++|+|.. +..|+.+|+.+... .........++++.++++.+++. +..++.+ ..|||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--------~~LSgG~ 153 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLP--------RAFSGGM 153 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCc--------hhcCHHH
Confidence 12469999999853 23588888854210 00000011235677889999996 4566544 6899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 584 kQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||++||||++++|+++||||||++||+.+.+.+++.+++ .|.|+|+|||+++.+. .+|+++++++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~ 224 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQ 224 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999999887753 3899999999999886 6999999975
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=311.74 Aligned_cols=199 Identities=21% Similarity=0.237 Sum_probs=162.3
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecC
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ 1179 (1374)
|+++|+++.|++. . .|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++......+++++|+||
T Consensus 1 i~~~~l~~~~~~~-~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSYGEQ-P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEeCCE-e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 5789999988753 2 399999999999999999999999999999999999999999999988765444567999999
Q ss_pred CCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCCh
Q 000647 1180 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1374)
Q Consensus 1180 ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSg 1258 (1374)
+|.+|.+ |++||+.++...... .....++++.++++.+++.+...+. ...||+
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~----------------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 131 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLK----------------LTAEDRQAIEVALARVGLAGLEKRL----------PGELSG 131 (211)
T ss_pred ccccCCCCcHHHHHhcccccccC----------------ccHHHHHHHHHHHHHcCCHHHHhCC----------cccCCH
Confidence 9999986 999999865421000 0001134567788888876554433 356999
Q ss_pred hhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--
Q 000647 1259 GEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD-- 1336 (1374)
Q Consensus 1259 GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~-- 1336 (1374)
|||||++| |||++++|+++||||||++||.++.+.+.+.+++
T Consensus 132 G~~qrv~i------------------------------------a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 175 (211)
T cd03298 132 GERQRVAL------------------------------------ARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLH 175 (211)
T ss_pred HHHHHHHH------------------------------------HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999887775542
Q ss_pred --cCceEEEecCCCCch-hhccceEEEEcC
Q 000647 1337 --MGITFVTSSQRPALI-PFHSLELRLIDG 1363 (1374)
Q Consensus 1337 --~~~TvI~IaHRl~~i-~~~~~~l~l~~g 1363 (1374)
.++|+|.|+|+++.+ .+.|+++.+.+|
T Consensus 176 ~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 205 (211)
T cd03298 176 AETKMTVLMVTHQPEDAKRLAQRVVFLDNG 205 (211)
T ss_pred HhcCCEEEEEecCHHHHHhhhCEEEEEECC
Confidence 489999999999766 568999999654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=329.53 Aligned_cols=199 Identities=27% Similarity=0.358 Sum_probs=161.6
Q ss_pred CcEEEeeeEEEcCC--C-CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCC---ccEEEeCCCCc------c
Q 000647 443 NYIEFSGVKVVTPT--G-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVGS------D 510 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~--~-~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~---~G~I~~~g~~~------~ 510 (1374)
..++++|+++.|+. + ..+++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|.+- +
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 46999999998863 2 46999999999999999999999999999999999999996 99999998641 1
Q ss_pred ---cc-ccEEEEecCCC--CC-cCCHHHHhcCCCCCCc-ccCCCCHHHHHHHHHHcCChh---HHhcCCCCccccCCCCC
Q 000647 511 ---LN-KEIFYVPQRPY--TA-VGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDEL 579 (1374)
Q Consensus 511 ---~~-~~i~~v~Q~p~--l~-~~Tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~~~~~~g~~L 579 (1374)
++ ++|+||||+|. +. ..|+.+|+..+..... .......+++.++++.++|.+ ..+++| .+|
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p--------~~L 162 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYP--------HEF 162 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCc--------ccC
Confidence 12 47999999983 43 3588888865422110 001112345678899999864 234455 689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 580 SgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||||||++|||||+.+|+++|+||||++||..+...+++.+++ .|.|+|+||||++.+. .+|++++|.+
T Consensus 163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~ 237 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYA 237 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999887653 3899999999999985 7999999975
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=316.71 Aligned_cols=194 Identities=24% Similarity=0.317 Sum_probs=160.9
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC----CccEEEeCCCCc---c-ccccE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL----VSGHIAKPGVGS---D-LNKEI 515 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~----~~G~I~~~g~~~---~-~~~~i 515 (1374)
.++++|+++.| ++++++|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+. + .++.+
T Consensus 4 ~l~~~~l~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 4 QIELRNIALQA--AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred EEEEeCeEEEe--ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence 58999999998 46799999999999999999999999999999999999999 999999998641 1 23579
Q ss_pred EEEecCCC-CC--cCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChh---HHhcCCCCccccCCCCCChhHHHHHHH
Q 000647 516 FYVPQRPY-TA--VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDELSLGEQQRLGM 589 (1374)
Q Consensus 516 ~~v~Q~p~-l~--~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1374)
+|+||+|. .+ ..|+.+|+.+...... ....++++.++++.+++.+ ..++.+ .+||||||||++|
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~LS~Gq~qrv~l 151 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARETCLALG--KPADDATLTAALEAVGLENAARVLKLYP--------FEMSGGMLQRMMI 151 (254)
T ss_pred EEEecCCccccCccccHHHHHHHHHHHcC--CChHHHHHHHHHHHcCCCChhhhhhcCC--------cccCHHHHHHHHH
Confidence 99999984 23 2588888755311100 0123456888999999976 345443 6899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 590 ARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||++++|+++||||||++||+.+.+.+++.+++ .|.|+|++||+++.+. .+|+++++++
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~ 216 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSH 216 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999887754 3789999999999874 7999999975
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=311.42 Aligned_cols=199 Identities=22% Similarity=0.294 Sum_probs=160.7
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecC
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ 1179 (1374)
|+++|+++.|++ +++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.. ..+.+++|+||
T Consensus 1 l~~~~l~~~~~~-~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR-VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI--AARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC-EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH--HHHccEEEecc
Confidence 478999998864 579999999999999999999999999999999999999999999999998764 34567999999
Q ss_pred CCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCCh
Q 000647 1180 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1374)
Q Consensus 1180 ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSg 1258 (1374)
+|.+|.+ |++||+.++... .+. .....++++.++++.+++....... ...|||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 131 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQL----------KGL------KKEEARRRIDEWLERLELSEYANKR----------VEELSK 131 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHH----------cCC------ChHHHHHHHHHHHHHcCChHHHhCc----------HhhCCH
Confidence 9999875 999999753110 000 0000123456677777765443221 356999
Q ss_pred hhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--
Q 000647 1259 GEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD-- 1336 (1374)
Q Consensus 1259 GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~-- 1336 (1374)
|||||++| |||++++|+++||||||++||.++.+.+.+.+++
T Consensus 132 G~~qrl~l------------------------------------a~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~ 175 (210)
T cd03269 132 GNQQKVQF------------------------------------IAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA 175 (210)
T ss_pred HHHHHHHH------------------------------------HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999887776543
Q ss_pred -cCceEEEecCCCCch-hhccceEEEEcC
Q 000647 1337 -MGITFVTSSQRPALI-PFHSLELRLIDG 1363 (1374)
Q Consensus 1337 -~~~TvI~IaHRl~~i-~~~~~~l~l~~g 1363 (1374)
.++|+|+|+|++..+ ++.|+++.+.+|
T Consensus 176 ~~~~tii~~sH~~~~~~~~~d~i~~l~~g 204 (210)
T cd03269 176 RAGKTVILSTHQMELVEELCDRVLLLNKG 204 (210)
T ss_pred HCCCEEEEECCCHHHHHHhhhEEEEEeCC
Confidence 489999999999765 578999999654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=333.48 Aligned_cols=203 Identities=20% Similarity=0.245 Sum_probs=168.8
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEec
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~Vp 1178 (1374)
.|+++||++.|++ ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+....+++++|||
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 4 YLSIDNIRKRFGA-FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 4899999999975 569999999999999999999999999999999999999999999999999876643456799999
Q ss_pred CCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCC
Q 000647 1179 QRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1374)
Q Consensus 1179 Q~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LS 1257 (1374)
|+|.+|+ .|++|||.|+..... . .....++.+.++++.++|.++.++. ...||
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~----------~------~~~~~~~~~~~~l~~l~L~~~~~~~----------~~~LS 136 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRG----------M------GRAEVAERVAELLDLVGLPGSERKY----------PGQLS 136 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcC----------C------CHHHHHHHHHHHHHHcCCCchhhCC----------hhhCC
Confidence 9999996 599999998743100 0 0000133467788888887666554 35799
Q ss_pred hhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH--
Q 000647 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK-- 1335 (1374)
Q Consensus 1258 gGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~-- 1335 (1374)
||||||+|| ||||+++|+++|||||||+||..+.+.+.+.++
T Consensus 137 gGq~QRvaL------------------------------------ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l 180 (353)
T TIGR03265 137 GGQQQRVAL------------------------------------ARALATSPGLLLLDEPLSALDARVREHLRTEIRQL 180 (353)
T ss_pred HHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999887766543
Q ss_pred --hcCceEEEecCCCCc-hhhccceEEEEcCC
Q 000647 1336 --DMGITFVTSSQRPAL-IPFHSLELRLIDGE 1364 (1374)
Q Consensus 1336 --~~~~TvI~IaHRl~~-i~~~~~~l~l~~g~ 1364 (1374)
+.|+|+|.|+|+++. ....|+++.|.+|+
T Consensus 181 ~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~ 212 (353)
T TIGR03265 181 QRRLGVTTIMVTHDQEEALSMADRIVVMNHGV 212 (353)
T ss_pred HHhcCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 358999999999964 67899999996653
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=325.68 Aligned_cols=201 Identities=19% Similarity=0.303 Sum_probs=165.2
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccc--c--cCCcccE
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE--E--AGSGCGI 1174 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~--~--~~~r~~i 1174 (1374)
-|+++||++.|++++.+++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.. . ...|+++
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 48999999999766779999999999999999999999999999999999999999999999998842 1 2356789
Q ss_pred EEecCCC--CCCCcchHHHhccCCCh---hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccc
Q 000647 1175 FYVPQRP--YTCLGTLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 1249 (1374)
Q Consensus 1175 ~~VpQ~P--~Lf~GTlR~Nl~yp~~~---~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~ 1249 (1374)
+||||+| .+|+.|++||+.++... +.. ...+.+.++++.++|..+.++
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~-------------------~~~~~~~~~l~~~gL~~~~~~-------- 137 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNLKLPED-------------------EVRKRVDNALKRTGIEHLKDK-------- 137 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHHcCCCHH-------------------HHHHHHHHHHHHCCChhhhhC--------
Confidence 9999999 67889999999764210 000 011235567788877544332
Q ss_pred cccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHH
Q 000647 1250 LNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQ 1329 (1374)
Q Consensus 1250 ~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~ 1329 (1374)
....||+|||||++| ||||+++|++|||||||++||++..+.
T Consensus 138 --~~~~LS~G~~qrl~l------------------------------------araL~~~p~lLilDEPt~gLD~~~~~~ 179 (283)
T PRK13636 138 --PTHCLSFGQKKRVAI------------------------------------AGVLVMEPKVLVLDEPTAGLDPMGVSE 179 (283)
T ss_pred --CcccCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 246799999999999 999999999999999999999999987
Q ss_pred HHHHHH----hcCceEEEecCCCCchh-hccceEEEEcCC
Q 000647 1330 LYRLAK----DMGITFVTSSQRPALIP-FHSLELRLIDGE 1364 (1374)
Q Consensus 1330 l~~~~~----~~~~TvI~IaHRl~~i~-~~~~~l~l~~g~ 1364 (1374)
+.++++ ..|+|+|.++|+++.+. +.|+++.|.+|+
T Consensus 180 l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~ 219 (283)
T PRK13636 180 IMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGR 219 (283)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 766543 24899999999998775 899999996654
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=316.39 Aligned_cols=200 Identities=21% Similarity=0.188 Sum_probs=165.3
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC-----CccEEEeCCCCc--------
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~-----~~G~I~~~g~~~-------- 509 (1374)
..+.++++++.|. +.++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 7 ~~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 7 IVMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred ceEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 3588899999884 56799999999999999999999999999999999999986 799999998641
Q ss_pred cccccEEEEecCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHH
Q 000647 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1374)
.+++.++|+||+|+++..|+.||+.++...... .....+++.++++.+++.+.+..... ....+||||||||++|
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~----~~~~~LS~G~~qrv~l 160 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLK----VSGLSLSGGQQQRLCI 160 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhh----CCcccCCHHHHHHHHH
Confidence 235679999999999889999999876432110 11123567888999998654332110 1236899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEec
Q 000647 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLD 648 (1374)
Q Consensus 590 ARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~ 648 (1374)
|||++++|+++||||||++||+.+...+.+.+++ .+.|+|++||+++.+ ..+|++++++
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFS 222 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999998875 378999999999976 5799999996
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=317.33 Aligned_cols=199 Identities=29% Similarity=0.357 Sum_probs=163.6
Q ss_pred CCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCC------CC------c
Q 000647 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG------VG------S 509 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g------~~------~ 509 (1374)
.+.+.++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+ .
T Consensus 8 ~~~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 8 EDVFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hhheeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 45799999999985 56799999999999999999999999999999999999999998777665 22 1
Q ss_pred cccccEEEEecCCCCCcC-CHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCChh----HHhcCCCCccccCCCCCChhH
Q 000647 510 DLNKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGE 583 (1374)
Q Consensus 510 ~~~~~i~~v~Q~p~l~~~-Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~----~~~~~~~~~~~~~g~~LSgGq 583 (1374)
.+++.++|+||+|.++.+ |++||+.++....... +.....++.++++.+++++ ..++.+ ..|||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~LS~G~ 158 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPA--------SQLSGGQ 158 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCc--------ccCCHHH
Confidence 235689999999988875 9999998763211100 0011234677888888864 333333 5799999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 584 kQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|||++||||++.+|+++||||||++||..+++.+.+.+.+ .+.|+|++||+++.+ ..+|+++++++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~ 227 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYN 227 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999888765 368999999999988 57999999975
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=316.47 Aligned_cols=202 Identities=18% Similarity=0.276 Sum_probs=161.9
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc-CCcccEEEec
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-GSGCGIFYVP 1178 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~-~~r~~i~~Vp 1178 (1374)
|+++||++.|++ +.+|+|+||+|+|||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..+++++|+|
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 2 LEVAGLSFAYGA-RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEEEeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 689999999875 57999999999999999999999999999999999999999999999999887552 2335799999
Q ss_pred CCCCC-CCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCC
Q 000647 1179 QRPYT-CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1374)
Q Consensus 1179 Q~P~L-f~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LS 1257 (1374)
|+|.+ +..|+++|+.++..... . ......+++.++++.+++.+.... ....||
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~----------~------~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~LS 134 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHG----------L------SRAEARERIAALLARLGLAERADD----------KVRELN 134 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcC----------C------CHHHHHHHHHHHHHHcCChhhhcC----------ChhhCC
Confidence 99988 56799999975421000 0 000012235566777776443222 235799
Q ss_pred hhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh-
Q 000647 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD- 1336 (1374)
Q Consensus 1258 gGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~- 1336 (1374)
||||||++| |||++++|+++||||||++||.++.+.+.+.+++
T Consensus 135 ~G~~qrl~l------------------------------------aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 178 (236)
T TIGR03864 135 GGHRRRVEI------------------------------------ARALLHRPALLLLDEPTVGLDPASRAAIVAHVRAL 178 (236)
T ss_pred HHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999887765542
Q ss_pred ---cCceEEEecCCCCchhhccceEEEEcCC
Q 000647 1337 ---MGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1337 ---~~~TvI~IaHRl~~i~~~~~~l~l~~g~ 1364 (1374)
.|+|+|+|+|+++.+...|+++.|.+|+
T Consensus 179 ~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~ 209 (236)
T TIGR03864 179 CRDQGLSVLWATHLVDEIEADDRLVVLHRGR 209 (236)
T ss_pred HHhCCCEEEEEecChhhHhhCCEEEEEeCCe
Confidence 4899999999998888889999996543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=294.60 Aligned_cols=196 Identities=22% Similarity=0.320 Sum_probs=161.2
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-c------cccccEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-~------~~~~~i~ 516 (1374)
.++++|++..|. ...+|+++||++++||+++|+||||+|||||+|+|+|+.++.+|+|.++|.+ . -.+..|+
T Consensus 3 mL~v~~l~~~YG-~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 3 MLEVENLSAGYG-KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred ceeEEeEeeccc-ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 689999999884 5789999999999999999999999999999999999999999999999976 1 2356799
Q ss_pred EEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcC-ChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 517 ~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
||||.-.+|. .||+||+..+...... +......++++.+.+- |.+..++ .+.+|||||||-+||||||+
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~--------~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQ--------RAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcC--------cccCCChHHHHHHHHHHHHh
Confidence 9999988876 6999999987543221 1111122455555543 3333333 25789999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
.+|++|+|||||.||-|...++|++.+++ .|.||++|.++.... +.+|+.++|++
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~ 212 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLEN 212 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeC
Confidence 99999999999999999999999887754 377999999998876 58999999986
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=326.52 Aligned_cols=201 Identities=19% Similarity=0.247 Sum_probs=164.0
Q ss_pred EEEeeeEEeCCCc----ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc------cC
Q 000647 1100 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE------AG 1169 (1374)
Q Consensus 1100 I~f~~V~~~yp~~----~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~------~~ 1169 (1374)
|+++||++.|++. +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.+||.++... ..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999742 4799999999999999999999999999999999999999999999999988643 23
Q ss_pred CcccEEEecCCC--CCCCcchHHHhccCCCh---hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCc-hhhhhhc
Q 000647 1170 SGCGIFYVPQRP--YTCLGTLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLEREE 1243 (1374)
Q Consensus 1170 ~r~~i~~VpQ~P--~Lf~GTlR~Nl~yp~~~---~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~-~~v~~~~ 1243 (1374)
.|++|+||||+| .+|..|++|||.++... +.. ..++.+.++++.++|. +..+.
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~-------------------~~~~~~~~~l~~~gL~~~~~~~-- 141 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLD-------------------EVKNYAHRLLMDLGFSRDVMSQ-- 141 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHH-------------------HHHHHHHHHHHHcCCChhhhhC--
Confidence 567899999998 68889999999865210 000 0122345667766663 22221
Q ss_pred cCCccccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCC
Q 000647 1244 VGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATS 1323 (1374)
Q Consensus 1244 ~Gldt~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD 1323 (1374)
....||||||||++| ||||+.+|+++||||||++||
T Consensus 142 --------~~~~LSgGq~qrv~l------------------------------------araL~~~p~illlDEPt~~LD 177 (286)
T PRK13646 142 --------SPFQMSGGQMRKIAI------------------------------------VSILAMNPDIIVLDEPTAGLD 177 (286)
T ss_pred --------CcccCCHHHHHHHHH------------------------------------HHHHHhCCCEEEEECCcccCC
Confidence 246799999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcCCC
Q 000647 1324 VDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGEG 1365 (1374)
Q Consensus 1324 ~~~e~~l~~~~~~----~~~TvI~IaHRl~~i-~~~~~~l~l~~g~g 1365 (1374)
+++.+.+.+++++ .|+|+|+|+|+++.+ ++.|+++.|.+|+-
T Consensus 178 ~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i 224 (286)
T PRK13646 178 PQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSI 224 (286)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 9999888776543 489999999999876 67899999976653
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=322.52 Aligned_cols=201 Identities=22% Similarity=0.325 Sum_probs=166.5
Q ss_pred CEEEeeeEEeCCC-cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEE
Q 000647 1099 SISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIF 1175 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~-~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~ 1175 (1374)
.|+++|+++.|++ .+++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ..+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 5899999999974 57899999999999999999999999999999999999999999999999998754 24567899
Q ss_pred EecCCC--CCCCcchHHHhccCCCh---hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc
Q 000647 1176 YVPQRP--YTCLGTLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1374)
Q Consensus 1176 ~VpQ~P--~Lf~GTlR~Nl~yp~~~---~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~ 1250 (1374)
|+||+| .++..|++|||.++... +.++ ..+.+.++++.++|.+.+.+.
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~-------- 139 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKK-------------------MKDIIDDLAKKVGMEDYLDKE-------- 139 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHH-------------------HHHHHHHHHHHcCCHHHhhCC--------
Confidence 999999 46678999999764210 0000 112355677777776554443
Q ss_pred ccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHH
Q 000647 1251 NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL 1330 (1374)
Q Consensus 1251 ~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l 1330 (1374)
...||+|||||++| ||||+++|+++||||||++||..+.+.+
T Consensus 140 --~~~LS~G~~qrl~l------------------------------------aral~~~p~lllLDEP~~gLD~~~~~~l 181 (271)
T PRK13632 140 --PQNLSGGQKQRVAI------------------------------------ASVLALNPEIIIFDESTSMLDPKGKREI 181 (271)
T ss_pred --cccCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 35799999999999 9999999999999999999999999887
Q ss_pred HHHHHh---c-CceEEEecCCCCchhhccceEEEEcCC
Q 000647 1331 YRLAKD---M-GITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1331 ~~~~~~---~-~~TvI~IaHRl~~i~~~~~~l~l~~g~ 1364 (1374)
.+++++ . +.|+|+++|+++.+...++++.|.+|+
T Consensus 182 ~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~ 219 (271)
T PRK13632 182 KKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGK 219 (271)
T ss_pred HHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCE
Confidence 776543 2 589999999998888899999996654
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=333.59 Aligned_cols=189 Identities=21% Similarity=0.323 Sum_probs=148.4
Q ss_pred CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC---CccEEEeCCCC-cc--ccccEEEEecCCCCC-cCCHH
Q 000647 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL---VSGHIAKPGVG-SD--LNKEIFYVPQRPYTA-VGTLR 530 (1374)
Q Consensus 458 ~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~---~~G~I~~~g~~-~~--~~~~i~~v~Q~p~l~-~~Tv~ 530 (1374)
..+++|++.-++||+.+.+.||.|||||||+++|+|-.+- ..|+|..||.+ ++ -++.++|++|+...+ ..|||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4699999999999999999999999999999999998753 35799999976 11 257899999987654 57999
Q ss_pred HHhcCCCCCCcc---cCCCCHHH-----HHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000647 531 DQLIYPLTSDQE---VEPLTHGG-----MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602 (1374)
Q Consensus 531 eni~~~~~~~~~---~~~~~~~~-----~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illL 602 (1374)
|-+-|....... ..+.++.+ .+.+++.+||++-.+....+ +.....|||||.||++|-+++.+|+++++
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGn---d~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGN---DMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecc---cccccccCcccceeeeeeeeecCcceeee
Confidence 999875332211 11122222 33678889998766654311 12356999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChh--hHhhccEEEEecC
Q 000647 603 DECTSAVTTDMEERFCAKVRA----MGTSCITISHRPA--LVAFHDVVLSLDG 649 (1374)
Q Consensus 603 DEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~--~~~~~d~il~l~~ 649 (1374)
||+|.|||..+.-++.+.+++ .+.|.++.-|+++ .....|+|++|.+
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e 337 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE 337 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec
Confidence 999999999999999988875 3778888888754 4567899999975
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=331.60 Aligned_cols=207 Identities=22% Similarity=0.308 Sum_probs=168.0
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEec
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~Vp 1178 (1374)
.|+++||++.|++ ..+|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.+||.++.+....+++|+|||
T Consensus 2 ~L~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFGR-TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 3789999999975 569999999999999999999999999999999999999999999999999877644456799999
Q ss_pred CCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCC
Q 000647 1179 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1374)
Q Consensus 1179 Q~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LS 1257 (1374)
|+|.+|+. |++||+.|+...... ... ......++.+.++++.++|.++.++. ...||
T Consensus 81 Q~~~l~p~~tv~eni~~~~~~~~~-------~~~-----~~~~~~~~~~~~~l~~~~L~~~~~~~----------~~~LS 138 (353)
T PRK10851 81 QHYALFRHMTVFDNIAFGLTVLPR-------RER-----PNAAAIKAKVTQLLEMVQLAHLADRY----------PAQLS 138 (353)
T ss_pred cCcccCCCCcHHHHHHhhhhhccc-------ccC-----CCHHHHHHHHHHHHHHcCCchhhhCC----------hhhCC
Confidence 99999975 999999987531000 000 00001133466788888886554443 35799
Q ss_pred hhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH--
Q 000647 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK-- 1335 (1374)
Q Consensus 1258 gGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~-- 1335 (1374)
||||||++| ||||+++|+++|||||||+||..+.+.+.+.++
T Consensus 139 gGq~QRval------------------------------------ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l 182 (353)
T PRK10851 139 GGQKQRVAL------------------------------------ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQL 182 (353)
T ss_pred HHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999887766543
Q ss_pred --hcCceEEEecCCCCc-hhhccceEEEEcCC
Q 000647 1336 --DMGITFVTSSQRPAL-IPFHSLELRLIDGE 1364 (1374)
Q Consensus 1336 --~~~~TvI~IaHRl~~-i~~~~~~l~l~~g~ 1364 (1374)
+.|+|+|.|+|+++. ..+.|+++.|.+|+
T Consensus 183 ~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~ 214 (353)
T PRK10851 183 HEELKFTSVFVTHDQEEAMEVADRVVVMSQGN 214 (353)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 248999999999964 67799999996553
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=316.94 Aligned_cols=201 Identities=22% Similarity=0.232 Sum_probs=159.4
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCC-----ccEEEeCCCCc--------c
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVGS--------D 510 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~-----~G~I~~~g~~~--------~ 510 (1374)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+. .
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 588999999986 468999999999999999999999999999999999999874 89999998541 2
Q ss_pred ccccEEEEecCCCCCc-CCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHH
Q 000647 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1374)
Q Consensus 511 ~~~~i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRla 588 (1374)
+++.++|+||+|.++. .|+.||+.++....... .....+.+.+.++.+++.+.+.... .....+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~----~~~~~~LS~G~~qrv~ 158 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRL----KTPATGLSGGQQQRLC 158 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhh----cCCcccCCHHHHHHHH
Confidence 3567999999998887 59999998643211100 0001233445566666543221100 0113689999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 589 lARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||||++++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|++++|++
T Consensus 159 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14272 159 IARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLV 222 (252)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999988765 3699999999999886 6899999976
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=316.22 Aligned_cols=203 Identities=22% Similarity=0.293 Sum_probs=164.1
Q ss_pred EEEeeeEEeCCCc---ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc-----CCc
Q 000647 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSG 1171 (1374)
Q Consensus 1100 I~f~~V~~~yp~~---~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~-----~~r 1171 (1374)
|+++||++.|++. +++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999754 37999999999999999999999999999999999999999999999999887542 235
Q ss_pred ccEEEecCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc
Q 000647 1172 CGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1374)
Q Consensus 1172 ~~i~~VpQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~ 1250 (1374)
++++|+||+|.+|. .|++||+.++.... +. .....++.+.++++.+++.+..++.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~-------- 137 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIA----------GV------PKAEIEERVLELLELVGLEDKADAY-------- 137 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHc----------CC------CHHHHHHHHHHHHHHCCChhhhhcC--------
Confidence 67999999999997 59999997542100 00 0000123456778877775544332
Q ss_pred ccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHH
Q 000647 1251 NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL 1330 (1374)
Q Consensus 1251 ~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l 1330 (1374)
...||+|||||++| |||++++|+++||||||++||.++.+.+
T Consensus 138 --~~~LS~G~~qrv~l------------------------------------a~al~~~p~lllLDEP~~~LD~~~~~~l 179 (233)
T cd03258 138 --PAQLSGGQKQRVGI------------------------------------ARALANNPKVLLCDEATSALDPETTQSI 179 (233)
T ss_pred --hhhCCHHHHHHHHH------------------------------------HHHHhcCCCEEEecCCCCcCCHHHHHHH
Confidence 35699999999999 9999999999999999999999999887
Q ss_pred HHHHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1331 YRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1331 ~~~~~~----~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
.+.+++ .|+|+|+|+|+++.+ .+.|+++.|.+|+
T Consensus 180 ~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~ 218 (233)
T cd03258 180 LALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGE 218 (233)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 776543 389999999999876 5689999996553
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=332.52 Aligned_cols=202 Identities=24% Similarity=0.291 Sum_probs=164.5
Q ss_pred EEEeeeEEeCC--C-cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc-----CCc
Q 000647 1100 ISFSKLDIITP--S-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSG 1171 (1374)
Q Consensus 1100 I~f~~V~~~yp--~-~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~-----~~r 1171 (1374)
|+++||++.|+ + .+++|+|+||+|++||.+||+||||||||||+++|.|+++|.+|+|.++|.++.... ..|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997 2 467999999999999999999999999999999999999999999999999987652 236
Q ss_pred ccEEEecCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc
Q 000647 1172 CGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1374)
Q Consensus 1172 ~~i~~VpQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~ 1250 (1374)
++|+||||+|.+|. .|++||+.++.... +. .....++.+.+.++.++|.+...+.
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~----------~~------~~~~~~~~~~~~l~~~gL~~~~~~~-------- 137 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELA----------GT------PKAEIKARVTELLELVGLSDKADRY-------- 137 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHc----------CC------CHHHHHHHHHHHHHHcCCchhhhCC--------
Confidence 78999999999986 69999998653100 00 0000123456678888775544332
Q ss_pred ccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHH
Q 000647 1251 NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL 1330 (1374)
Q Consensus 1251 ~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l 1330 (1374)
...||||||||++| ||||+++|++||||||||+||..+.+.+
T Consensus 138 --~~~LSgGq~qRv~l------------------------------------AraL~~~p~iLlLDEPts~LD~~~~~~l 179 (343)
T PRK11153 138 --PAQLSGGQKQRVAI------------------------------------ARALASNPKVLLCDEATSALDPATTRSI 179 (343)
T ss_pred --hhhCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 35799999999999 9999999999999999999999999887
Q ss_pred HHHHHh----cCceEEEecCCCCch-hhccceEEEEcC
Q 000647 1331 YRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDG 1363 (1374)
Q Consensus 1331 ~~~~~~----~~~TvI~IaHRl~~i-~~~~~~l~l~~g 1363 (1374)
.+++++ .|+|+|+|+|+++.+ ++.|+++.|.+|
T Consensus 180 ~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G 217 (343)
T PRK11153 180 LELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAG 217 (343)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 776543 489999999999765 568999999654
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=318.91 Aligned_cols=194 Identities=21% Similarity=0.247 Sum_probs=162.0
Q ss_pred CCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEe
Q 000647 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 1177 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~V 1177 (1374)
-.|+++||++.|++ +.+|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.. .+++++|+
T Consensus 11 ~~l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~i~~v 86 (257)
T PRK11247 11 TPLLLNAVSKRYGE-RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAE---AREDTRLM 86 (257)
T ss_pred CcEEEEEEEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHH---hhCceEEE
Confidence 35999999999864 579999999999999999999999999999999999999999999999976643 35679999
Q ss_pred cCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCC
Q 000647 1178 PQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 1256 (1374)
Q Consensus 1178 pQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~L 1256 (1374)
||+|.+|+ .|++||+.++.... .++++.++++.+++.+...+. ...|
T Consensus 87 ~q~~~l~~~~tv~enl~~~~~~~----------------------~~~~~~~~l~~~gl~~~~~~~----------~~~L 134 (257)
T PRK11247 87 FQDARLLPWKKVIDNVGLGLKGQ----------------------WRDAALQALAAVGLADRANEW----------PAAL 134 (257)
T ss_pred ecCccCCCCCcHHHHHHhcccch----------------------HHHHHHHHHHHcCChhHhcCC----------hhhC
Confidence 99999987 69999998653210 123456677877775543322 3579
Q ss_pred ChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH-
Q 000647 1257 SLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK- 1335 (1374)
Q Consensus 1257 SgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~- 1335 (1374)
|||||||++| ||||+++|+++||||||++||.++.+.+.++++
T Consensus 135 SgGqkqrl~l------------------------------------araL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 178 (257)
T PRK11247 135 SGGQKQRVAL------------------------------------ARALIHRPGLLLLDEPLGALDALTRIEMQDLIES 178 (257)
T ss_pred CHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999987766553
Q ss_pred ---hcCceEEEecCCCCch-hhccceEEEEcC
Q 000647 1336 ---DMGITFVTSSQRPALI-PFHSLELRLIDG 1363 (1374)
Q Consensus 1336 ---~~~~TvI~IaHRl~~i-~~~~~~l~l~~g 1363 (1374)
+.++|+|+|+|+++.+ .+.|+++.+.+|
T Consensus 179 ~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G 210 (257)
T PRK11247 179 LWQQHGFTVLLVTHDVSEAVAMADRVLLIEEG 210 (257)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 2489999999999765 678899988654
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=303.11 Aligned_cols=172 Identities=25% Similarity=0.409 Sum_probs=149.1
Q ss_pred cEEEeeeEEEcCC---CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCC--cCCccEEEeCCCC--ccccccEE
Q 000647 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVG--SDLNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~---~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~--~~~~G~I~~~g~~--~~~~~~i~ 516 (1374)
.++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|.+ ...++.++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 5889999999975 267999999999999999999999999999999999986 4899999999865 33456899
Q ss_pred EEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc
Q 000647 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1374)
Q Consensus 517 ~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~ 595 (1374)
|++|+|.++. .|++||+.++. .++ +||||||||++||||++.
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~----------------~~~---------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSA----------------LLR---------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred EecccCccccCCcHHHHHHHHH----------------HHh---------------------cCCHHHhHHHHHHHHHhc
Confidence 9999998776 59999997631 000 599999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhh--HhhccEEEEecCCCc
Q 000647 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL--VAFHDVVLSLDGEGE 652 (1374)
Q Consensus 596 ~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~--~~~~d~il~l~~~g~ 652 (1374)
+|+++||||||++||+++.+.+.+.+++ .|+|+|++||+++. ...+|++++|+++|.
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~ 187 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGK 187 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCe
Confidence 9999999999999999999999887764 48999999999973 578999999975343
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=317.59 Aligned_cols=202 Identities=22% Similarity=0.325 Sum_probs=162.0
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc---CCcccEEE
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIFY 1176 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~---~~r~~i~~ 1176 (1374)
|+++||++.|++ +.+|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..+.+++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGK-RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCC-EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 578999999975 56999999999999999999999999999999999999999999999999886652 23457999
Q ss_pred ecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccC
Q 000647 1177 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1374)
Q Consensus 1177 VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~ 1255 (1374)
+||+|.+|++ |++||+.++.... +. ......+.+.++++.+++.+...+ ....
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~ 133 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIR----------GL------SKKEREEKLEELLEEFHITHLRKS----------KASS 133 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhc----------CC------CHHHHHHHHHHHHHHcCChhhhhC----------Chhh
Confidence 9999999987 9999997542100 00 000012234566777766443322 2357
Q ss_pred CChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH
Q 000647 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1335 (1374)
Q Consensus 1256 LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~ 1335 (1374)
||+|||||++| |||++++|+++||||||++||.++.+.+.++++
T Consensus 134 LS~G~~qrl~l------------------------------------a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~ 177 (232)
T cd03218 134 LSGGERRRVEI------------------------------------ARALATNPKFLLLDEPFAGVDPIAVQDIQKIIK 177 (232)
T ss_pred CCHHHHHHHHH------------------------------------HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999988777554
Q ss_pred h---cCceEEEecCCCC-chhhccceEEEEcCC
Q 000647 1336 D---MGITFVTSSQRPA-LIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1336 ~---~~~TvI~IaHRl~-~i~~~~~~l~l~~g~ 1364 (1374)
+ .+.|+|+++|+++ ..++.++++.|.+|+
T Consensus 178 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 210 (232)
T cd03218 178 ILKDRGIGVLITDHNVRETLSITDRAYIIYEGK 210 (232)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 3 4899999999994 667789999996654
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=315.02 Aligned_cols=200 Identities=22% Similarity=0.339 Sum_probs=158.6
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc---CCcccEEE
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIFY 1176 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~---~~r~~i~~ 1176 (1374)
|+++||++.|++ +++++|+||+|+|||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..+++++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGK-SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCC-eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 578999999875 46999999999999999999999999999999999999999999999999887652 23567999
Q ss_pred ecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhC-CCchhhhhhccCCcccccccc
Q 000647 1177 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGV-RLSYLLEREEVGWDANLNWED 1254 (1374)
Q Consensus 1177 VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v-~L~~~v~~~~~Gldt~~~~g~ 1254 (1374)
+||+|.+|.+ |+++|+.++...... ....+.+.++++.+ ++.+ .++. ...
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~------------------~~~~~~~~~~l~~~~~l~~-------~~~~---~~~ 131 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRR------------------AKRKARLERVYELFPRLKE-------RRKQ---LAG 131 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCc------------------hhHHHHHHHHHHHHHhhhh-------hhhC---chh
Confidence 9999999987 999999765321000 00112233444443 2221 1222 235
Q ss_pred CCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHH
Q 000647 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1334 (1374)
Q Consensus 1255 ~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~ 1334 (1374)
.||+|||||++| |||++++|+++||||||++||.++.+.+.+.+
T Consensus 132 ~LS~G~~qrv~l------------------------------------aral~~~p~llllDEPt~~LD~~~~~~l~~~l 175 (222)
T cd03224 132 TLSGGEQQMLAI------------------------------------ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI 175 (222)
T ss_pred hCCHHHHHHHHH------------------------------------HHHHhcCCCEEEECCCcccCCHHHHHHHHHHH
Confidence 799999999999 99999999999999999999999998877765
Q ss_pred Hh---cCceEEEecCCCCc-hhhccceEEEEcCC
Q 000647 1335 KD---MGITFVTSSQRPAL-IPFHSLELRLIDGE 1364 (1374)
Q Consensus 1335 ~~---~~~TvI~IaHRl~~-i~~~~~~l~l~~g~ 1364 (1374)
++ .++|+|+++|+++. ..+.++++.+.+|+
T Consensus 176 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (222)
T cd03224 176 RELRDEGVTILLVEQNARFALEIADRAYVLERGR 209 (222)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCe
Confidence 43 58999999999976 46789999996543
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=317.30 Aligned_cols=209 Identities=20% Similarity=0.224 Sum_probs=166.7
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCC---CCCCeEecCCCccccc--cCCccc
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP---VVSGSLTKPSQHIDEE--AGSGCG 1173 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~---~~~G~I~idg~dI~~~--~~~r~~ 1173 (1374)
.|+++||++.|++ +++|+|+||+|+|||.++|+||||||||||+++|.|+++ |.+|+|.++|.++.+. ...|.+
T Consensus 2 ~~~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYGK-KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEECC-EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 4789999999975 579999999999999999999999999999999999985 6899999999998765 344668
Q ss_pred EEEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccc
Q 000647 1174 IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1374)
Q Consensus 1174 i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g 1253 (1374)
|+|+||+|.+|+.|++||+.++.... +. .......++++.++++.+++...+... ++ ...
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~----------~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~---~~~ 140 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLH----------GM----IKNKDEEEALVVDCLQKVGLFEEVKDK---LK---QNA 140 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhc----------Cc----ccChHHHHHHHHHHHHHcCCChhhhHH---hc---CCc
Confidence 99999999999999999997642100 00 000001233466778888875433221 11 134
Q ss_pred cCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHH
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL 1333 (1374)
Q Consensus 1254 ~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~ 1333 (1374)
..||+|||||++| |||++++|+++||||||++||.++...+.+.
T Consensus 141 ~~LS~G~~qrv~l------------------------------------aral~~~p~lllLDEP~~~LD~~~~~~l~~~ 184 (246)
T PRK14269 141 LALSGGQQQRLCI------------------------------------ARALAIKPKLLLLDEPTSALDPISSGVIEEL 184 (246)
T ss_pred ccCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 6799999999999 9999999999999999999999999888776
Q ss_pred HHh--cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1334 AKD--MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1334 ~~~--~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
+++ .++|+|+|+|+++.+ ++.|+++.|.+|+
T Consensus 185 l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 218 (246)
T PRK14269 185 LKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE 218 (246)
T ss_pred HHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCE
Confidence 653 489999999999755 6789999996654
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=316.47 Aligned_cols=202 Identities=23% Similarity=0.249 Sum_probs=163.2
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecC
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ 1179 (1374)
|+++||++.|++ +++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... +..++|+||
T Consensus 2 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~~v~q 77 (255)
T PRK11248 2 LQISHLYADYGG-KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP---GAERGVVFQ 77 (255)
T ss_pred EEEEEEEEEeCC-eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC---CCcEEEEeC
Confidence 789999999865 6799999999999999999999999999999999999999999999999987642 235899999
Q ss_pred CCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCCh
Q 000647 1180 RPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1374)
Q Consensus 1180 ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSg 1258 (1374)
+|.+|. .|+++|+.++... .+. .....++.+.++++.+++.+...+. ...|||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~gl~~~~~~~----------~~~LSg 131 (255)
T PRK11248 78 NEGLLPWRNVQDNVAFGLQL----------AGV------EKMQRLEIAHQMLKKVGLEGAEKRY----------IWQLSG 131 (255)
T ss_pred CCccCCCCcHHHHHHhHHHH----------cCC------CHHHHHHHHHHHHHHcCChhHhhCC----------hhhCCH
Confidence 999887 5999999764210 000 0000123466778888775543332 357999
Q ss_pred hhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--
Q 000647 1259 GEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD-- 1336 (1374)
Q Consensus 1259 GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~-- 1336 (1374)
|||||++| ||||+++|++|||||||++||.++.+.+.+++++
T Consensus 132 Gq~qrl~l------------------------------------aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 175 (255)
T PRK11248 132 GQRQRVGI------------------------------------ARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLW 175 (255)
T ss_pred HHHHHHHH------------------------------------HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999887775543
Q ss_pred --cCceEEEecCCCCch-hhccceEEEEcCCCCe
Q 000647 1337 --MGITFVTSSQRPALI-PFHSLELRLIDGEGNW 1367 (1374)
Q Consensus 1337 --~~~TvI~IaHRl~~i-~~~~~~l~l~~g~g~~ 1367 (1374)
.|+|+|+|+|++..+ .+.|+++.|.+++|..
T Consensus 176 ~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i 209 (255)
T PRK11248 176 QETGKQVLLITHDIEEAVFMATELVLLSPGPGRV 209 (255)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEE
Confidence 489999999999765 6688999996556654
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=310.29 Aligned_cols=204 Identities=31% Similarity=0.404 Sum_probs=166.3
Q ss_pred EEEeeeEEEcCCC---CeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc-C----CccEEEeCCCC------c-
Q 000647 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-L----VSGHIAKPGVG------S- 509 (1374)
Q Consensus 445 i~~~~v~~~~~~~---~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~-~----~~G~I~~~g~~------~- 509 (1374)
++++|++..|+.. ..+++|+||++++||+++|||.|||||||+.++|+|+.| | .+|+|.++|.+ +
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 6789999887653 469999999999999999999999999999999999998 3 57999999975 1
Q ss_pred --cc-cccEEEEecCCCC---CcCCHHHHhcCCCCCCcc--cCCCCHHHHHHHHHHcCChh---HHhcCCCCccccCCCC
Q 000647 510 --DL-NKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDE 578 (1374)
Q Consensus 510 --~~-~~~i~~v~Q~p~l---~~~Tv~eni~~~~~~~~~--~~~~~~~~~~~~l~~~~L~~---~~~~~~~~~~~~~g~~ 578 (1374)
++ .++|+++||+|.. +..||.+++.-....... ......+++.++|+.+++.+ ..+.+| .+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP--------he 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP--------HE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC--------cc
Confidence 22 3689999999852 335888887643321111 01122456788999999975 567778 68
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecCCCce
Q 000647 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEW 653 (1374)
Q Consensus 579 LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~~g~~ 653 (1374)
||||||||+.||.|++.+|+++|.||||+|||..+..+|++.+++ .|.|+|+||||+..+. .||+|++|.. |+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYa--G~ 231 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYA--GR 231 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEEC--cE
Confidence 999999999999999999999999999999999999999887753 5999999999999875 7999999975 45
Q ss_pred EEecc
Q 000647 654 RVHDK 658 (1374)
Q Consensus 654 ~~~~~ 658 (1374)
.++..
T Consensus 232 iVE~g 236 (316)
T COG0444 232 IVEEG 236 (316)
T ss_pred EEEeC
Confidence 66543
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=324.31 Aligned_cols=200 Identities=21% Similarity=0.223 Sum_probs=163.4
Q ss_pred EEEeeeEEeCCCc----ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc------cC
Q 000647 1100 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE------AG 1169 (1374)
Q Consensus 1100 I~f~~V~~~yp~~----~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~------~~ 1169 (1374)
|+|+||++.|+.. +++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|++||.++... ..
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 7899999999743 3699999999999999999999999999999999999999999999999998531 23
Q ss_pred CcccEEEecCCC--CCCCcchHHHhccCCC---hhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCc-hhhhhhc
Q 000647 1170 SGCGIFYVPQRP--YTCLGTLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLEREE 1243 (1374)
Q Consensus 1170 ~r~~i~~VpQ~P--~Lf~GTlR~Nl~yp~~---~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~-~~v~~~~ 1243 (1374)
.|.+++||+|+| .+|.+|+.||+.++.. .+.++ .++.+.++++.++|. .+..+
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~-------------------~~~~~~~~l~~~~L~~~~~~~-- 140 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEK-------------------AEKIAAEKLEMVGLADEFWEK-- 140 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHH-------------------HHHHHHHHHHHcCCChhhccC--
Confidence 466899999999 7899999999976521 00000 123356677777774 23222
Q ss_pred cCCccccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCC
Q 000647 1244 VGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATS 1323 (1374)
Q Consensus 1244 ~Gldt~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD 1323 (1374)
....||||||||++| ||||+++|++|||||||++||
T Consensus 141 --------~~~~LSgGqkqrvai------------------------------------A~aL~~~p~illLDEPt~gLD 176 (288)
T PRK13643 141 --------SPFELSGGQMRRVAI------------------------------------AGILAMEPEVLVLDEPTAGLD 176 (288)
T ss_pred --------CcccCCHHHHHHHHH------------------------------------HHHHHhCCCEEEEECCccCCC
Confidence 135799999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHH---hcCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1324 VDVEEQLYRLAK---DMGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1324 ~~~e~~l~~~~~---~~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
+++.+.+.+.++ ..|+|+|+|+|+++.+ .+.|+++.|.+|.
T Consensus 177 ~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~ 221 (288)
T PRK13643 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGH 221 (288)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 999987776553 2589999999999866 6899999996654
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=316.61 Aligned_cols=203 Identities=25% Similarity=0.271 Sum_probs=162.4
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEe
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYV 1177 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~V 1177 (1374)
++++||++.|++.+.+|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ...+.+++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 47899999887535699999999999999999999999999999999999999999999999988765 2345689999
Q ss_pred cCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCch--hhhhhccCCcccccccc
Q 000647 1178 PQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY--LLEREEVGWDANLNWED 1254 (1374)
Q Consensus 1178 pQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~--~v~~~~~Gldt~~~~g~ 1254 (1374)
||+|.+|. .|++||+.++... .+. .....++.+.++++.+++.. ...+ ...
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~----------~~~------~~~~~~~~~~~~l~~l~l~~~~~~~~----------~~~ 134 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKL----------LKW------PKEKIRERADELLALVGLDPAEFADR----------YPH 134 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHH----------cCC------CHHHHHHHHHHHHHHcCCCcHHHHhc----------Chh
Confidence 99999986 6999999754210 000 00001234567777777753 2221 246
Q ss_pred CCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHH
Q 000647 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1334 (1374)
Q Consensus 1255 ~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~ 1334 (1374)
+||+|||||++| |||++++|+++||||||++||.++.+.+.+.+
T Consensus 135 ~LS~G~~qrv~l------------------------------------aral~~~p~llllDEPt~~LD~~~~~~l~~~L 178 (242)
T cd03295 135 ELSGGQQQRVGV------------------------------------ARALAADPPLLLMDEPFGALDPITRDQLQEEF 178 (242)
T ss_pred hCCHHHHHHHHH------------------------------------HHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 799999999999 99999999999999999999999988776655
Q ss_pred Hh----cCceEEEecCCCCc-hhhccceEEEEcCC
Q 000647 1335 KD----MGITFVTSSQRPAL-IPFHSLELRLIDGE 1364 (1374)
Q Consensus 1335 ~~----~~~TvI~IaHRl~~-i~~~~~~l~l~~g~ 1364 (1374)
++ .|+|+|+|+|++.. ..+.|+++.|.+|+
T Consensus 179 ~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~ 213 (242)
T cd03295 179 KRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGE 213 (242)
T ss_pred HHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 43 38999999999975 56788999986654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=311.46 Aligned_cols=202 Identities=20% Similarity=0.198 Sum_probs=162.0
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc-cCCcccEEEec
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVP 1178 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~-~~~r~~i~~Vp 1178 (1374)
|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ...+.+++|+|
T Consensus 1 i~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYGD-FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEECC-EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 578999998865 5799999999999999999999999999999999999999999999999877543 23456799999
Q ss_pred CCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCC
Q 000647 1179 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1374)
Q Consensus 1179 Q~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LS 1257 (1374)
|+|.++.+ |+++|+.++... .+. .....++.+.++++.+++.+...+. ...||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS 133 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARL----------YGV------PGAERRERIDELLDFVGLLEAADRL----------VKTYS 133 (220)
T ss_pred CCccccccCcHHHHHHHHHHH----------cCC------CHHHHHHHHHHHHHHcCCHHHhhCC----------hhhCC
Confidence 99998875 999999754210 000 0000123456778888876543332 35699
Q ss_pred hhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh-
Q 000647 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD- 1336 (1374)
Q Consensus 1258 gGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~- 1336 (1374)
||||||++| |||++++|+++||||||++||+++.+.+.+.+++
T Consensus 134 ~G~~qr~~l------------------------------------a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 177 (220)
T cd03265 134 GGMRRRLEI------------------------------------ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKL 177 (220)
T ss_pred HHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999877765543
Q ss_pred ---cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1337 ---MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1337 ---~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
.|+|+|+|+|+++.+ .+.++++.+.+|+
T Consensus 178 ~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 178 KEEFGMTILLTTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 389999999999765 5688999996543
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=313.78 Aligned_cols=201 Identities=23% Similarity=0.266 Sum_probs=162.9
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc-----CCccEEEeCCCCc--------c
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS--------D 510 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~-----~~~G~I~~~g~~~--------~ 510 (1374)
.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+. .
T Consensus 3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 478999999986 4679999999999999999999999999999999999864 4899999998541 2
Q ss_pred ccccEEEEecCCCCCcCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHH
Q 000647 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1374)
Q Consensus 511 ~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlal 589 (1374)
+++.++|+||+|.++..|++||+.++....... .....+++.++++.+++.+.+.... + .....||||||||++|
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~---~~~~~LS~Gq~qrv~l 157 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKL-D---KSALGLSGGQQQRLCI 157 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHH-h---CCcccCCHHHHHHHHH
Confidence 356799999999999899999998753211100 0112345677889998865432210 0 1136899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 590 ARal~~~p~illLDEptsaLD~~~~~~i~~~l~~--~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||++++|+++||||||++||+.+...+.+.+++ .+.|+|++||+++.+. .+|+++++++
T Consensus 158 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~ 220 (250)
T PRK14266 158 ARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLN 220 (250)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEEC
Confidence 9999999999999999999999999999888764 4789999999998775 6889988875
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=303.03 Aligned_cols=169 Identities=31% Similarity=0.452 Sum_probs=148.5
Q ss_pred cEEEeeeEEEcCC-----CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCC--cCCccEEEeCCCCc---cccc
Q 000647 444 YIEFSGVKVVTPT-----GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVGS---DLNK 513 (1374)
Q Consensus 444 ~i~~~~v~~~~~~-----~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~--~~~~G~I~~~g~~~---~~~~ 513 (1374)
.++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.+. ..++
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 4899999999975 367999999999999999999999999999999999999 99999999998651 3567
Q ss_pred cEEEEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000647 514 EIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1374)
Q Consensus 514 ~i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1374)
.++|+||++.++. .|++||+.++.. + ..||||||||++||||
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~----------------~---------------------~~LS~G~~qrv~lara 125 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAK----------------L---------------------RGLSGGERKRVSIALE 125 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHH----------------h---------------------ccCCHHHHHHHHHHHH
Confidence 8999999998876 599999865310 0 0599999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChh-hH-hhccEEEEecC
Q 000647 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPA-LV-AFHDVVLSLDG 649 (1374)
Q Consensus 593 l~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~-~~-~~~d~il~l~~ 649 (1374)
++++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++ .+ ..+|+++++++
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~ 187 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ 187 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC
Confidence 9999999999999999999999999887764 4899999999986 34 57999999976
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=292.64 Aligned_cols=197 Identities=22% Similarity=0.275 Sum_probs=167.8
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc-------cccccEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~-------~~~~~i~ 516 (1374)
.+..+|+.+.| +++++++++||+|++||++++.||||+||||.|.++.|+.+|++|+|.+++.+- .-+..||
T Consensus 4 ~L~a~~l~K~y-~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 4 TLVAENLAKSY-KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EEEehhhhHhh-CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 47888999988 467899999999999999999999999999999999999999999999999761 1245699
Q ss_pred EEecCCCCCcC-CHHHHhcCCCCCCcccC--CCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHH
Q 000647 517 YVPQRPYTAVG-TLRDQLIYPLTSDQEVE--PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 517 ~v~Q~p~l~~~-Tv~eni~~~~~~~~~~~--~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal 593 (1374)
|+||+|.+|.+ ||+|||..-........ .....++++.|+.+++.+..++.. .+||||||+|+.|||||
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a--------~sLSGGERRR~EIARaL 154 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKA--------YSLSGGERRRVEIARAL 154 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcc--------cccccchHHHHHHHHHH
Confidence 99999999986 99999986443322111 123445778999999999888753 78999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHH---HHhcCCEEEEEccCh-hhHhhccEEEEecC
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAK---VRAMGTSCITISHRP-ALVAFHDVVLSLDG 649 (1374)
Q Consensus 594 ~~~p~illLDEptsaLD~~~~~~i~~~---l~~~~~TiI~vtH~~-~~~~~~d~il~l~~ 649 (1374)
..+|++++||||++|+||.+...|.+. |++.|.-|++.-|+. +++..|||.+++..
T Consensus 155 a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~ 214 (243)
T COG1137 155 AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISD 214 (243)
T ss_pred hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEec
Confidence 999999999999999999988777664 556799999999986 56789999999975
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=312.17 Aligned_cols=203 Identities=22% Similarity=0.252 Sum_probs=164.9
Q ss_pred CEEEeeeEEeCCCc---ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccC-----C
Q 000647 1099 SISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG-----S 1170 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~---~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~-----~ 1170 (1374)
.|+++||++.|++. .++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++...+. .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 58999999998753 369999999999999999999999999999999999999999999999998876521 2
Q ss_pred -cccEEEecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcc
Q 000647 1171 -GCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1374)
Q Consensus 1171 -r~~i~~VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt 1248 (1374)
+.+++++||+|.+|.+ |++||+.++..... . ......+++.++++.+++.+..++.
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~----------~------~~~~~~~~~~~~l~~~~l~~~~~~~------ 143 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRG----------E------SSRQSRNGAKALLEQLGLGKRLDHL------ 143 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcC----------C------CHHHHHHHHHHHHHHcCCHhHhhCC------
Confidence 3579999999999875 99999975421000 0 0000123466778888876554443
Q ss_pred ccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHH
Q 000647 1249 NLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEE 1328 (1374)
Q Consensus 1249 ~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~ 1328 (1374)
...||+|||||++| ||||+++|+++||||||++||.++.+
T Consensus 144 ----~~~LS~Ge~qrl~l------------------------------------a~al~~~p~llllDEPt~~LD~~~~~ 183 (228)
T PRK10584 144 ----PAQLSGGEQQRVAL------------------------------------ARAFNGRPDVLFADEPTGNLDRQTGD 183 (228)
T ss_pred ----hhhCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 34699999999999 99999999999999999999999988
Q ss_pred HHHHHHH----hcCceEEEecCCCCchhhccceEEEEcC
Q 000647 1329 QLYRLAK----DMGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1329 ~l~~~~~----~~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
.+.+.++ +.|.|+|+|+|+++.+...|+++.+.+|
T Consensus 184 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g 222 (228)
T PRK10584 184 KIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNG 222 (228)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 7776553 2489999999999888888999999654
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=332.18 Aligned_cols=203 Identities=18% Similarity=0.264 Sum_probs=168.6
Q ss_pred CCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCC--CeEecCCCccccccCCcccEE
Q 000647 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVS--GSLTKPSQHIDEEAGSGCGIF 1175 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~--G~I~idg~dI~~~~~~r~~i~ 1175 (1374)
|.|+++||++.|++ ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++ |+|.++|.++.+....+++|+
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 4 GGIRIDHLRVAYGA-NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred eEEEEEEEEEEECC-eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 67999999999965 569999999999999999999999999999999999999999 999999999876643456799
Q ss_pred EecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccccccc
Q 000647 1176 YVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1374)
Q Consensus 1176 ~VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~ 1254 (1374)
+|+|+|.+|+. |+++||.|+..... . .....+..+.++++.++|.++.++.| .
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~----------~------~~~~~~~~v~~~l~~~gL~~~~~~~~----------~ 136 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQK----------M------PKADIAERVADALKLVGLGDAAAHLP----------A 136 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcC----------C------CHHHHHHHHHHHHHhcCCCchhhCCh----------h
Confidence 99999999976 99999998753100 0 00001234667888888877665543 5
Q ss_pred CCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHH
Q 000647 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1334 (1374)
Q Consensus 1255 ~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~ 1334 (1374)
+||||||||+|| ||||+++|++||||||||+||....+.+.+.+
T Consensus 137 ~LSgGq~QRvaL------------------------------------ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l 180 (362)
T TIGR03258 137 QLSGGMQQRIAI------------------------------------ARAIAIEPDVLLLDEPLSALDANIRANMREEI 180 (362)
T ss_pred hCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 699999999999 99999999999999999999999987776644
Q ss_pred H----hc-CceEEEecCCCCc-hhhccceEEEEcC
Q 000647 1335 K----DM-GITFVTSSQRPAL-IPFHSLELRLIDG 1363 (1374)
Q Consensus 1335 ~----~~-~~TvI~IaHRl~~-i~~~~~~l~l~~g 1363 (1374)
+ +. |+|+|.|+|+++. ....|+++.|.+|
T Consensus 181 ~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 181 AALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred HHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 3 23 7999999999965 6779999999654
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=299.39 Aligned_cols=161 Identities=27% Similarity=0.377 Sum_probs=142.8
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-c------cccccEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-~------~~~~~i~ 516 (1374)
.++++|+++.| +++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++
T Consensus 4 ~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 4 VLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred EEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 58999999987 8999999999999999999999999999999999999999999999854 1 1356799
Q ss_pred EEecCC---C-CCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHH
Q 000647 517 YVPQRP---Y-TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1374)
Q Consensus 517 ~v~Q~p---~-l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1374)
|+||+| . .+..|++||+.++.. ||||||||++||||
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHH
Confidence 999985 3 445799999876310 99999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 593 l~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
++++|+++||||||++||+++.+.+.+.+++ .+.|+|++||+++.+. .+|+++++++
T Consensus 119 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~ 179 (182)
T cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYE 179 (182)
T ss_pred HccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecC
Confidence 9999999999999999999999999888764 4799999999998775 5999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=332.78 Aligned_cols=203 Identities=20% Similarity=0.330 Sum_probs=166.0
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEec
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~Vp 1178 (1374)
.|+++|+++.|++ ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++......+++|+|||
T Consensus 3 ~l~i~~l~~~~~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYGD-VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 3899999999965 569999999999999999999999999999999999999999999999998876643456799999
Q ss_pred CCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCC
Q 000647 1179 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1374)
Q Consensus 1179 Q~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LS 1257 (1374)
|+|.+|+. |++|||.|+.... +. .....++.+.++++.++|.++.++. ...||
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~----------~~------~~~~~~~~~~~~l~~lgL~~~~~~~----------~~~LS 135 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLA----------GA------KKEEINQRVNQVAEVLQLAHLLDRK----------PKALS 135 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhc----------CC------CHHHHHHHHHHHHHHcCChhhhcCC----------hhhCC
Confidence 99999975 9999998764210 00 0000123466778888886554443 35699
Q ss_pred hhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH--
Q 000647 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK-- 1335 (1374)
Q Consensus 1258 gGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~-- 1335 (1374)
||||||++| ||||+++|++||||||||+||..+.+.+.+.++
T Consensus 136 gGq~QRvaL------------------------------------AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l 179 (369)
T PRK11000 136 GGQRQRVAI------------------------------------GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL 179 (369)
T ss_pred HHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999887766543
Q ss_pred --hcCceEEEecCCCCc-hhhccceEEEEcCC
Q 000647 1336 --DMGITFVTSSQRPAL-IPFHSLELRLIDGE 1364 (1374)
Q Consensus 1336 --~~~~TvI~IaHRl~~-i~~~~~~l~l~~g~ 1364 (1374)
+.|.|+|.|+|+++. ....|+++.|.+|+
T Consensus 180 ~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~ 211 (369)
T PRK11000 180 HKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 211 (369)
T ss_pred HHHhCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 248999999999964 56789999996553
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=321.40 Aligned_cols=200 Identities=23% Similarity=0.311 Sum_probs=167.1
Q ss_pred CEEEeeeEEeCCC-cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEE
Q 000647 1099 SISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIF 1175 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~-~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~ 1175 (1374)
.|+++||++.|++ .+++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.+||.++... ...+++|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 4899999999975 46799999999999999999999999999999999999999999999999998765 23456799
Q ss_pred EecCCC--CCCCcchHHHhccCCCh---hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc
Q 000647 1176 YVPQRP--YTCLGTLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1374)
Q Consensus 1176 ~VpQ~P--~Lf~GTlR~Nl~yp~~~---~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~ 1250 (1374)
|+||+| .++..|++|||.++... ++. ..++.+.++++.++|.+.+.+.
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~-------------------~~~~~~~~~l~~~gL~~~~~~~-------- 137 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPRE-------------------EMVERVDQALRQVGMEDFLNRE-------- 137 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHH-------------------HHHHHHHHHHHHcCChhhhhCC--------
Confidence 999999 56778999999865311 000 0123456778888886665543
Q ss_pred ccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHH
Q 000647 1251 NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL 1330 (1374)
Q Consensus 1251 ~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l 1330 (1374)
...||||||||++| ||||+++|+++||||||++||+++.+.+
T Consensus 138 --~~~LS~G~~qrv~l------------------------------------aral~~~p~lllLDEPt~gLD~~~~~~l 179 (279)
T PRK13635 138 --PHRLSGGQKQRVAI------------------------------------AGVLALQPDIIILDEATSMLDPRGRREV 179 (279)
T ss_pred --cccCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 34699999999999 9999999999999999999999999888
Q ss_pred HHHHHh----cCceEEEecCCCCchhhccceEEEEcC
Q 000647 1331 YRLAKD----MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1331 ~~~~~~----~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
.+++++ .|+|+|+|+|++..+...++++.|.+|
T Consensus 180 ~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G 216 (279)
T PRK13635 180 LETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKG 216 (279)
T ss_pred HHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECC
Confidence 776543 389999999999888888999999654
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=331.73 Aligned_cols=201 Identities=25% Similarity=0.327 Sum_probs=169.2
Q ss_pred CCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEe
Q 000647 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 1177 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~V 1177 (1374)
..|+++|+++.|++ ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.+||.++.+....+++|++|
T Consensus 13 ~~L~l~~l~~~~~~-~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 91 (375)
T PRK09452 13 PLVELRGISKSFDG-KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTV 91 (375)
T ss_pred ceEEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 35899999999964 56999999999999999999999999999999999999999999999999987764345679999
Q ss_pred cCCCCCCCc-chHHHhccCCCh---hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccc
Q 000647 1178 PQRPYTCLG-TLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1374)
Q Consensus 1178 pQ~P~Lf~G-TlR~Nl~yp~~~---~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g 1253 (1374)
+|+|.||+. |++|||.|+... ...+ .++.+.++++.++|.++.++.|
T Consensus 92 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~p---------- 142 (375)
T PRK09452 92 FQSYALFPHMTVFENVAFGLRMQKTPAAE-------------------ITPRVMEALRMVQLEEFAQRKP---------- 142 (375)
T ss_pred ecCcccCCCCCHHHHHHHHHhhcCCCHHH-------------------HHHHHHHHHHHcCCchhhhCCh----------
Confidence 999999976 999999987531 0100 1234567788888877666543
Q ss_pred cCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHH
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL 1333 (1374)
Q Consensus 1254 ~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~ 1333 (1374)
.+||||||||+|| ||||+++|++||||||||+||....+.+++.
T Consensus 143 ~~LSgGq~QRVaL------------------------------------ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~ 186 (375)
T PRK09452 143 HQLSGGQQQRVAI------------------------------------ARAVVNKPKVLLLDESLSALDYKLRKQMQNE 186 (375)
T ss_pred hhCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 5699999999999 9999999999999999999999998877665
Q ss_pred HH----hcCceEEEecCCCCc-hhhccceEEEEcCC
Q 000647 1334 AK----DMGITFVTSSQRPAL-IPFHSLELRLIDGE 1364 (1374)
Q Consensus 1334 ~~----~~~~TvI~IaHRl~~-i~~~~~~l~l~~g~ 1364 (1374)
++ +.|+|+|.|+|++.. ..+.|+++.+.+|+
T Consensus 187 L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~ 222 (375)
T PRK09452 187 LKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGR 222 (375)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 43 358999999999964 67899999997654
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=311.50 Aligned_cols=203 Identities=29% Similarity=0.366 Sum_probs=158.6
Q ss_pred EEEeeeEEeCCCc---ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc-----CCc
Q 000647 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSG 1171 (1374)
Q Consensus 1100 I~f~~V~~~yp~~---~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~-----~~r 1171 (1374)
|+++||++.|++. .++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 7899999999764 37999999999999999999999999999999999999999999999999887642 346
Q ss_pred ccEEEecCCC--CCC-CcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHH-HHHHHHhCCCc-hhhhhhccCC
Q 000647 1172 CGIFYVPQRP--YTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSY-LKTILEGVRLS-YLLEREEVGW 1246 (1374)
Q Consensus 1172 ~~i~~VpQ~P--~Lf-~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~-l~~~L~~v~L~-~~v~~~~~Gl 1246 (1374)
++++|+||+| +++ ..|+++|+.++... ... . ........ ..++++.+++. ....+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~----------~~~-~----~~~~~~~~~~~~~l~~~~l~~~~~~~----- 141 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRI----------HGK-L----SKKEARKEAVLLLLVGVGLPEEVLNR----- 141 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHh----------ccC-C----cHHHHHHHHHHHHHHHCCCChhHhhC-----
Confidence 6899999999 444 57999999653210 000 0 00000011 12456666653 22222
Q ss_pred ccccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHH
Q 000647 1247 DANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDV 1326 (1374)
Q Consensus 1247 dt~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~ 1326 (1374)
....||||||||++| ||||+++|+++||||||++||.++
T Consensus 142 -----~~~~LS~G~~qrv~l------------------------------------aral~~~p~lllLDEPt~~LD~~~ 180 (228)
T cd03257 142 -----YPHELSGGQRQRVAI------------------------------------ARALALNPKLLIADEPTSALDVSV 180 (228)
T ss_pred -----CchhcCHHHHHHHHH------------------------------------HHHHhcCCCEEEecCCCCCCCHHH
Confidence 235699999999999 999999999999999999999999
Q ss_pred HHHHHHHHHh----cCceEEEecCCCCchh-hccceEEEEcC
Q 000647 1327 EEQLYRLAKD----MGITFVTSSQRPALIP-FHSLELRLIDG 1363 (1374)
Q Consensus 1327 e~~l~~~~~~----~~~TvI~IaHRl~~i~-~~~~~l~l~~g 1363 (1374)
.+.+.+.+++ .|+|+|+++|+++.+. +.|+++.|.+|
T Consensus 181 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 222 (228)
T cd03257 181 QAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAG 222 (228)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCC
Confidence 9887776543 3899999999998776 78999999654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=324.44 Aligned_cols=200 Identities=22% Similarity=0.243 Sum_probs=163.0
Q ss_pred EEEeeeEEeCCCc----ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc------cC
Q 000647 1100 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE------AG 1169 (1374)
Q Consensus 1100 I~f~~V~~~yp~~----~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~------~~ 1169 (1374)
|+++||++.|+.. +++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.+||.++... ..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999998752 5799999999999999999999999999999999999999999999999988531 23
Q ss_pred CcccEEEecCCC--CCCCcchHHHhccCCC---hhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCc-hhhhhhc
Q 000647 1170 SGCGIFYVPQRP--YTCLGTLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLEREE 1243 (1374)
Q Consensus 1170 ~r~~i~~VpQ~P--~Lf~GTlR~Nl~yp~~---~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~-~~v~~~~ 1243 (1374)
.|++|+||||+| .+|+.|+++||.++.. .+..+ ..+.+.++++.++|. .+.++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~-------------------~~~~~~~~l~~~gL~~~~~~~-- 141 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEED-------------------AKQKAREMIELVGLPEELLAR-- 141 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHH-------------------HHHHHHHHHHHCCCChhhhhC--
Confidence 456799999998 6888899999976521 01100 012355677777774 22222
Q ss_pred cCCccccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCC
Q 000647 1244 VGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATS 1323 (1374)
Q Consensus 1244 ~Gldt~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD 1323 (1374)
....||||||||++| ||||+.+|++|||||||++||
T Consensus 142 --------~~~~LSgGq~qrv~l------------------------------------AraL~~~P~llllDEPt~~LD 177 (290)
T PRK13634 142 --------SPFELSGGQMRRVAI------------------------------------AGVLAMEPEVLVLDEPTAGLD 177 (290)
T ss_pred --------CcccCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEECCcccCC
Confidence 245799999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1324 VDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1324 ~~~e~~l~~~~~~----~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
+.+...+.+++++ .|.|+|+|+|+++.+ ++.|+++.|.+|+
T Consensus 178 ~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~ 223 (290)
T PRK13634 178 PKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGT 223 (290)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999877765542 489999999999765 6789999997664
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=320.42 Aligned_cols=203 Identities=19% Similarity=0.185 Sum_probs=165.7
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc---cCCcccEEE
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE---AGSGCGIFY 1176 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~---~~~r~~i~~ 1176 (1374)
|+++||++.|+..+.+|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ...++++++
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 78999999997666799999999999999999999999999999999999999999999999988754 234567999
Q ss_pred ecCCCC--CCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccccccc
Q 000647 1177 VPQRPY--TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1374)
Q Consensus 1177 VpQ~P~--Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~ 1254 (1374)
|||+|. ++..|+++||.++.... +. .....++.+.++++.++|.+...+. ..
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~----------~~------~~~~~~~~~~~~l~~~gl~~~~~~~----------~~ 135 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENL----------CL------PPIEIRKRVDRALAEIGLEKYRHRS----------PK 135 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHc----------CC------CHHHHHHHHHHHHHHCCCHHHhcCC----------cc
Confidence 999995 56789999997642100 00 0000123356677777776554332 35
Q ss_pred CCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHH
Q 000647 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1334 (1374)
Q Consensus 1255 ~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~ 1334 (1374)
.||+|||||++| ||||+++|+++||||||++||+.+.+.+.+.+
T Consensus 136 ~LS~G~~qrv~l------------------------------------aral~~~p~lllLDEPt~gLD~~~~~~l~~~l 179 (274)
T PRK13644 136 TLSGGQGQCVAL------------------------------------AGILTMEPECLIFDEVTSMLDPDSGIAVLERI 179 (274)
T ss_pred cCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 699999999999 99999999999999999999999988777655
Q ss_pred H---hcCceEEEecCCCCchhhccceEEEEcCC
Q 000647 1335 K---DMGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1335 ~---~~~~TvI~IaHRl~~i~~~~~~l~l~~g~ 1364 (1374)
+ ..|+|+|+++|+++.+...|+++.+.+|+
T Consensus 180 ~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~ 212 (274)
T PRK13644 180 KKLHEKGKTIVYITHNLEELHDADRIIVMDRGK 212 (274)
T ss_pred HHHHhCCCEEEEEecCHHHHhhCCEEEEEECCE
Confidence 3 35899999999998889999999996554
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=305.56 Aligned_cols=192 Identities=26% Similarity=0.345 Sum_probs=159.1
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc-cCCcccEEEec
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVP 1178 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~-~~~r~~i~~Vp 1178 (1374)
|+++||++.|++ +.+|+|+||+|++||.+||+|+||||||||+++|.|+++|.+|+|.++|.++... ...+.+++++|
T Consensus 1 l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERDG-RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeCC-ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 478999998865 5799999999999999999999999999999999999999999999999887654 34566899999
Q ss_pred CCCCCC-CcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCC
Q 000647 1179 QRPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1374)
Q Consensus 1179 Q~P~Lf-~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LS 1257 (1374)
|+|.++ ..|++||+.++... ..++.+.++++.+++...... ....||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~----------------------~~~~~~~~~l~~~~l~~~~~~----------~~~~LS 127 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHAD----------------------HSDEQVEEALARVGLNGFEDR----------PVAQLS 127 (201)
T ss_pred cccccCCCcCHHHHHHhhccc----------------------ccHHHHHHHHHHcCChhhhcC----------chhhCC
Confidence 999986 57999999764210 023446677788877543222 135699
Q ss_pred hhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh-
Q 000647 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD- 1336 (1374)
Q Consensus 1258 gGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~- 1336 (1374)
||||||++| |||++++|+++||||||++||....+.+.+.+++
T Consensus 128 ~G~~qrl~l------------------------------------aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 171 (201)
T cd03231 128 AGQQRRVAL------------------------------------ARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH 171 (201)
T ss_pred HHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999888776643
Q ss_pred --cCceEEEecCCC-CchhhccceEEE
Q 000647 1337 --MGITFVTSSQRP-ALIPFHSLELRL 1360 (1374)
Q Consensus 1337 --~~~TvI~IaHRl-~~i~~~~~~l~l 1360 (1374)
.|+|+|+|+|+. ...++.++.+++
T Consensus 172 ~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 172 CARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HhCCCEEEEEecCchhhhhccceeEec
Confidence 489999999986 566777777766
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=317.34 Aligned_cols=203 Identities=21% Similarity=0.259 Sum_probs=164.0
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc-----------
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA----------- 1168 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~----------- 1168 (1374)
|+++||++.|++ +++++|+||+|+|||.++|+||||||||||+++|.|+++|.+|+|.++|.++....
T Consensus 1 i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGI-LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCC-eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 579999999975 57999999999999999999999999999999999999999999999999886431
Q ss_pred ----CCcccEEEecCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhc
Q 000647 1169 ----GSGCGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREE 1243 (1374)
Q Consensus 1169 ----~~r~~i~~VpQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~ 1243 (1374)
..|+++++|||+|.+|. +|+++|+.++.... .+. .....++.+.++++.+++.+...+.
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~---------~~~------~~~~~~~~~~~~l~~~gl~~~~~~~- 143 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV---------LGM------ARAEAEKRAMELLDMVGLADKADHM- 143 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh---------cCC------CHHHHHHHHHHHHHHcCChhHhhcC-
Confidence 24668999999999885 79999997531100 000 0001133466778888776554432
Q ss_pred cCCccccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCC
Q 000647 1244 VGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATS 1323 (1374)
Q Consensus 1244 ~Gldt~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD 1323 (1374)
...||||||||++| ||||+++|+++||||||++||
T Consensus 144 ---------~~~LS~G~~qrv~l------------------------------------aral~~~p~llllDEP~~~LD 178 (252)
T TIGR03005 144 ---------PAQLSGGQQQRVAI------------------------------------ARALAMRPKVMLFDEVTSALD 178 (252)
T ss_pred ---------hhhcCHHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCcccCC
Confidence 35799999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1324 VDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1324 ~~~e~~l~~~~~~----~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
.++.+.+.+++++ .|.|+|+|+|++..+ ++.|+++.|.+|+
T Consensus 179 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 224 (252)
T TIGR03005 179 PELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGR 224 (252)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 9999877665542 489999999999876 6789999996654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=296.14 Aligned_cols=205 Identities=20% Similarity=0.248 Sum_probs=168.2
Q ss_pred CCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc-----CCcc
Q 000647 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGC 1172 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~-----~~r~ 1172 (1374)
-.|++++|++.+ +++.|++|+||+|++||.++|+||||||||||++++.|++.|++|+|.++|.||.++. ..|+
T Consensus 7 ~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 7 PLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred ceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 469999999988 6678999999999999999999999999999999999999999999999999999882 4578
Q ss_pred cEEEecCCCCCCCc-chHHHhccCCCh----hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCc
Q 000647 1173 GIFYVPQRPYTCLG-TLRDQIIYPLSR----EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWD 1247 (1374)
Q Consensus 1173 ~i~~VpQ~P~Lf~G-TlR~Nl~yp~~~----~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gld 1247 (1374)
+++++.|.--||+. |++||+.||+.. ++.++++ -...=|+.|||..-...
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~-------------------lv~~KL~~VGL~~~~~~------ 140 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRE-------------------LVLMKLELVGLRGAAAD------ 140 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHH-------------------HHHHHHHhcCCChhhhh------
Confidence 89999999999977 999999999742 1111111 11223566766543111
Q ss_pred cccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHH
Q 000647 1248 ANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVE 1327 (1374)
Q Consensus 1248 t~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e 1327 (1374)
-..+.||||.+.|.|+ |||+.-+|.|+++|||||+||+-+.
T Consensus 141 ---~~PsELSGGM~KRvaL------------------------------------ARAialdPell~~DEPtsGLDPI~a 181 (263)
T COG1127 141 ---LYPSELSGGMRKRVAL------------------------------------ARAIALDPELLFLDEPTSGLDPISA 181 (263)
T ss_pred ---hCchhhcchHHHHHHH------------------------------------HHHHhcCCCEEEecCCCCCCCcchH
Confidence 1357899999999999 9999999999999999999999987
Q ss_pred HHHHHHHH----hcCceEEEecCCC-CchhhccceEEEEcCCCCe
Q 000647 1328 EQLYRLAK----DMGITFVTSSQRP-ALIPFHSLELRLIDGEGNW 1367 (1374)
Q Consensus 1328 ~~l~~~~~----~~~~TvI~IaHRl-~~i~~~~~~l~l~~g~g~~ 1367 (1374)
..+.++++ ..|.|+|+|+|++ ++....|+...|.||+=-|
T Consensus 182 ~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~ 226 (263)
T COG1127 182 GVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIA 226 (263)
T ss_pred HHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEE
Confidence 66655554 3599999999999 5667779999997776444
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=330.75 Aligned_cols=203 Identities=19% Similarity=0.261 Sum_probs=168.2
Q ss_pred CCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEe
Q 000647 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 1177 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~V 1177 (1374)
..|+++||++.|++ ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.+||.++.+....+++++||
T Consensus 18 ~~l~l~~v~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 18 PLLEIRNLTKSFDG-QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred ceEEEEeEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 45999999998864 57999999999999999999999999999999999999999999999999887764445679999
Q ss_pred cCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCC
Q 000647 1178 PQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 1256 (1374)
Q Consensus 1178 pQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~L 1256 (1374)
+|+|.||+. |++|||.|+..... . ......+++.++++.++|.++.++. ...|
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~~----------~------~~~~~~~~v~~~l~~l~L~~~~~~~----------~~~L 150 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQDK----------L------PKAEIASRVNEMLGLVHMQEFAKRK----------PHQL 150 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHcC----------C------CHHHHHHHHHHHHHHcCCchhhcCC----------hhhC
Confidence 999999976 99999998753100 0 0000123466788888887665544 3569
Q ss_pred ChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHH----
Q 000647 1257 SLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYR---- 1332 (1374)
Q Consensus 1257 SgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~---- 1332 (1374)
|||||||+|| ||||+++|++||||||||+||....+.+.+
T Consensus 151 SgGq~QRVaL------------------------------------ARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 194 (377)
T PRK11607 151 SGGQRQRVAL------------------------------------ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVD 194 (377)
T ss_pred CHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999877654
Q ss_pred HHHhcCceEEEecCCCCc-hhhccceEEEEcC
Q 000647 1333 LAKDMGITFVTSSQRPAL-IPFHSLELRLIDG 1363 (1374)
Q Consensus 1333 ~~~~~~~TvI~IaHRl~~-i~~~~~~l~l~~g 1363 (1374)
+.++.|+|+|.|+|+++. ....|+++.|.+|
T Consensus 195 l~~~~g~tii~vTHd~~ea~~laDri~vl~~G 226 (377)
T PRK11607 195 ILERVGVTCVMVTHDQEEAMTMAGRIAIMNRG 226 (377)
T ss_pred HHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCC
Confidence 334468999999999965 6789999999655
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=332.37 Aligned_cols=207 Identities=19% Similarity=0.254 Sum_probs=168.9
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEE
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFY 1176 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~ 1176 (1374)
.|+++||++.|++ +.+|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.+. ..++++|++
T Consensus 3 ~L~~~nls~~y~~-~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFGD-TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEECC-EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 3899999999975 6799999999999999999999999999999999999999999999999998875 245668999
Q ss_pred ecCCCCC-CCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccC
Q 000647 1177 VPQRPYT-CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1374)
Q Consensus 1177 VpQ~P~L-f~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~ 1255 (1374)
|||+|.+ |..|++||+.++....-. . ........++.+.++++.+++.++.++. ..+
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~-----~-------~~~~~~~~~~~v~~~le~vgl~~~~~~~----------~~~ 139 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRS-----R-------FDTWTETDRAAVERAMERTGVAQFADRP----------VTS 139 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcc-----c-------ccCCCHHHHHHHHHHHHHcCCchhhcCC----------hhh
Confidence 9999998 678999999875321000 0 0000011234577888988887665442 357
Q ss_pred CChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH
Q 000647 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1335 (1374)
Q Consensus 1256 LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~ 1335 (1374)
||||||||++| ||||+++|++|||||||++||......+.++++
T Consensus 140 LSgGerQRv~I------------------------------------ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~ 183 (402)
T PRK09536 140 LSGGERQRVLL------------------------------------ARALAQATPVLLLDEPTASLDINHQVRTLELVR 183 (402)
T ss_pred CCHHHHHHHHH------------------------------------HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999887766554
Q ss_pred h---cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1336 D---MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1336 ~---~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
+ .|.|+|+++|+++.+ ++.|+.+.|.+|+
T Consensus 184 ~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~ 216 (402)
T PRK09536 184 RLVDDGKTAVAAIHDLDLAARYCDELVLLADGR 216 (402)
T ss_pred HHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 3 589999999999887 7789999986554
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=319.97 Aligned_cols=200 Identities=24% Similarity=0.294 Sum_probs=166.0
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEe
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYV 1177 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~V 1177 (1374)
++++||++.|++.+.+|+|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.++|.++... ...+.++++|
T Consensus 4 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 83 (277)
T PRK13652 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLV 83 (277)
T ss_pred EEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEE
Confidence 78999999998666799999999999999999999999999999999999999999999999988654 2345679999
Q ss_pred cCCC--CCCCcchHHHhccCCC---hhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccccc
Q 000647 1178 PQRP--YTCLGTLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252 (1374)
Q Consensus 1178 pQ~P--~Lf~GTlR~Nl~yp~~---~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~ 1252 (1374)
||+| .+|..|+++|+.++.. .+.+ ..++.+.++++.++|.+...+.
T Consensus 84 ~q~~~~~~~~~tv~~~l~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~l~~~~~~~---------- 134 (277)
T PRK13652 84 FQNPDDQIFSPTVEQDIAFGPINLGLDEE-------------------TVAHRVSSALHMLGLEELRDRV---------- 134 (277)
T ss_pred ecCcccccccccHHHHHHhHHHHcCCCHH-------------------HHHHHHHHHHHHCCChhHhcCC----------
Confidence 9998 4778899999976421 0000 0123456778888886555443
Q ss_pred ccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHH
Q 000647 1253 EDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYR 1332 (1374)
Q Consensus 1253 g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~ 1332 (1374)
...||+|||||++| ||||+++|++|||||||++||+.+.+.+.+
T Consensus 135 ~~~LS~Gq~qrl~l------------------------------------araL~~~p~llilDEPt~gLD~~~~~~l~~ 178 (277)
T PRK13652 135 PHHLSGGEKKRVAI------------------------------------AGVIAMEPQVLVLDEPTAGLDPQGVKELID 178 (277)
T ss_pred cccCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 35699999999999 999999999999999999999999987766
Q ss_pred HHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1333 LAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1333 ~~~~----~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
++++ .|+|+|.++|+++.+ ++.|+++.|.+|+
T Consensus 179 ~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~ 215 (277)
T PRK13652 179 FLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGR 215 (277)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCe
Confidence 5542 389999999999877 6889999996654
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=302.05 Aligned_cols=168 Identities=27% Similarity=0.357 Sum_probs=149.9
Q ss_pred EEEeeeEEeCCCc-ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc-cCCcccEEEe
Q 000647 1100 ISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYV 1177 (1374)
Q Consensus 1100 I~f~~V~~~yp~~-~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~-~~~r~~i~~V 1177 (1374)
|+++|+++.|++. +++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ..+|++++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 5789999999764 5799999999999999999999999999999999999999999999999887654 2346679999
Q ss_pred cCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCC
Q 000647 1178 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1374)
Q Consensus 1178 pQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LS 1257 (1374)
||+|.+|++|++||+ + ..||
T Consensus 81 ~q~~~~~~~tv~~~i--~----------------------------------------------------------~~LS 100 (178)
T cd03247 81 NQRPYLFDTTLRNNL--G----------------------------------------------------------RRFS 100 (178)
T ss_pred ccCCeeecccHHHhh--c----------------------------------------------------------ccCC
Confidence 999999999998886 1 2379
Q ss_pred hhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh-
Q 000647 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD- 1336 (1374)
Q Consensus 1258 gGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~- 1336 (1374)
+|||||++| |||++++|+++||||||++||.++.+.+.+.+++
T Consensus 101 ~G~~qrv~l------------------------------------aral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~ 144 (178)
T cd03247 101 GGERQRLAL------------------------------------ARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV 144 (178)
T ss_pred HHHHHHHHH------------------------------------HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999888776653
Q ss_pred -cCceEEEecCCCCchhhccceEEEEcC
Q 000647 1337 -MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1337 -~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
.++|+|.++|+++.++..++.+.+.+|
T Consensus 145 ~~~~tii~~sh~~~~~~~~d~~~~l~~g 172 (178)
T cd03247 145 LKDKTLIWITHHLTGIEHMDKILFLENG 172 (178)
T ss_pred cCCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 489999999999999999999999654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=319.07 Aligned_cols=199 Identities=21% Similarity=0.283 Sum_probs=163.0
Q ss_pred CCcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc-----CCccEEEeCCCCc-------
Q 000647 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 509 (1374)
Q Consensus 442 ~~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~-----~~~G~I~~~g~~~------- 509 (1374)
...|+++|+++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 43 ~~~l~i~nl~~~~~~-~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 43 DAKLSVEDLDVYYGD-DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred CceEEEEEEEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 346999999999864 679999999999999999999999999999999999986 6899999998531
Q ss_pred -cccccEEEEecCCCCCcCCHHHHhcCCCCCCc------------cc-CCCCHHHHHHHHHHcCChh----HHhcCCCCc
Q 000647 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ------------EV-EPLTHGGMVELLKNVDLEY----LLDRYPPEK 571 (1374)
Q Consensus 510 -~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~------------~~-~~~~~~~~~~~l~~~~L~~----~~~~~~~~~ 571 (1374)
.+++.++|+||++.++..|++||+.++..... .. ....++++.++++.+++.+ ..++.+
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 198 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNA--- 198 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcc---
Confidence 23467999999999888999999997532100 00 0112345778888888853 233322
Q ss_pred cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhc--CCEEEEEccChhhHh-hccEEE-Ee
Q 000647 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVL-SL 647 (1374)
Q Consensus 572 ~~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~~--~~TiI~vtH~~~~~~-~~d~il-~l 647 (1374)
.+||||||||++|||||+++|+++||||||++||+.+...+.+.+++. +.|+|++||+++.+. .+|+++ ++
T Consensus 199 -----~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 199 -----LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 689999999999999999999999999999999999999999988753 689999999999875 699975 56
Q ss_pred cC
Q 000647 648 DG 649 (1374)
Q Consensus 648 ~~ 649 (1374)
++
T Consensus 274 ~~ 275 (305)
T PRK14264 274 TG 275 (305)
T ss_pred cC
Confidence 64
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=282.30 Aligned_cols=203 Identities=18% Similarity=0.232 Sum_probs=170.2
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecC
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ 1179 (1374)
|.+++|.|.|...+. .++++|++||.|||+||||||||||++++.||..|.+|+|.|+|+|.....-+++-++++.|
T Consensus 2 l~L~~V~~~y~~~~~---~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 2 LALDDVRFSYGHLPM---RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred ccccceEEeeCcceE---EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 457889998876553 57889999999999999999999999999999999999999999998877666678999999
Q ss_pred CCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCCh
Q 000647 1180 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1374)
Q Consensus 1180 ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSg 1258 (1374)
|--||.- |+++||..|.+.. +| ......+.+..++..|||..+.+++| .+|||
T Consensus 79 EnNLFaHLtV~qNigLGl~P~------Lk----------L~a~~r~~v~~aa~~vGl~~~~~RLP----------~~LSG 132 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPG------LK----------LNAEQREKVEAAAAQVGLAGFLKRLP----------GELSG 132 (231)
T ss_pred ccccchhhhhhhhhcccCCcc------cc----------cCHHHHHHHHHHHHHhChhhHhhhCc----------cccCc
Confidence 9999965 9999998876531 00 00112344778899999998888886 46899
Q ss_pred hhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHH----HH
Q 000647 1259 GEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYR----LA 1334 (1374)
Q Consensus 1259 GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~----~~ 1334 (1374)
|||||+|+ ||+|+|.-.||+||||-||||+.....|.. ++
T Consensus 133 GqRQRvAL------------------------------------ARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~ 176 (231)
T COG3840 133 GQRQRVAL------------------------------------ARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC 176 (231)
T ss_pred hHHHHHHH------------------------------------HHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999998766544 44
Q ss_pred HhcCceEEEecCCC-CchhhccceEEEEcCCCCe
Q 000647 1335 KDMGITFVTSSQRP-ALIPFHSLELRLIDGEGNW 1367 (1374)
Q Consensus 1335 ~~~~~TvI~IaHRl-~~i~~~~~~l~l~~g~g~~ 1367 (1374)
.+.+.|+++|+|.+ +..+..++.+.+.+|.=.|
T Consensus 177 ~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~ 210 (231)
T COG3840 177 DERKMTLLMVTHHPEDAARIADRVVFLDNGRIAA 210 (231)
T ss_pred HhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEe
Confidence 56899999999999 6678889999997776555
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=311.10 Aligned_cols=199 Identities=27% Similarity=0.371 Sum_probs=161.5
Q ss_pred CcEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCC--CcCCccEEEeCCCCc------cccc-
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVGS------DLNK- 513 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl--~~~~~G~I~~~g~~~------~~~~- 513 (1374)
..++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.+. ..++
T Consensus 6 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 6 PILEIKNLHASVN-ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred ceEEEEeEEEEeC-CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 3699999999986 45799999999999999999999999999999999998 689999999998541 1122
Q ss_pred cEEEEecCCCCCcC-CHHHHhcCCCCCCc---ccCCC----CHHHHHHHHHHcCCh-hHHhcCCCCccccCCCCCChhHH
Q 000647 514 EIFYVPQRPYTAVG-TLRDQLIYPLTSDQ---EVEPL----THGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1374)
Q Consensus 514 ~i~~v~Q~p~l~~~-Tv~eni~~~~~~~~---~~~~~----~~~~~~~~l~~~~L~-~~~~~~~~~~~~~~g~~LSgGqk 584 (1374)
.++|+||+|.++.+ |+.+|+.+...... ..... ..+++.++++.+++. ...++.+ ...||||||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-------~~~LSgG~~ 157 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNV-------NEGFSGGEK 157 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcccc-------ccCCCHHHH
Confidence 48899999988765 88999875421100 00001 123567789999987 3555544 125999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHhh--ccEEEEecC
Q 000647 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF--HDVVLSLDG 649 (1374)
Q Consensus 585 QRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~~--~d~il~l~~ 649 (1374)
||++||||++++|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+.. +|+++++++
T Consensus 158 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~ 227 (252)
T CHL00131 158 KRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQN 227 (252)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeC
Confidence 999999999999999999999999999999999988764 48999999999998864 799999975
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=314.12 Aligned_cols=210 Identities=20% Similarity=0.262 Sum_probs=165.3
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc---CCcccEEE
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIFY 1176 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~---~~r~~i~~ 1176 (1374)
|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..+.+++|
T Consensus 3 i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 3 LYLEGLSVSFDG-FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred EEEEeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 789999999975 57999999999999999999999999999999999999999999999999886552 23457999
Q ss_pred ecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccC
Q 000647 1177 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1374)
Q Consensus 1177 VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~ 1255 (1374)
+||+|.+|.+ |++||+.++...... .. ....+. .....++.+.++++.+++.+.... ....
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~-~~-~~~~~~------~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~ 143 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKS-VF-ASLFFR------LSAEEKDRIEEVLETIGLADEADR----------LAGL 143 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccc-cc-cccccc------cHHHHHHHHHHHHHHcCCchhhcC----------Chhh
Confidence 9999999987 999999865321000 00 000000 000113346677777776543322 1357
Q ss_pred CChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH
Q 000647 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1335 (1374)
Q Consensus 1256 LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~ 1335 (1374)
||||||||++| |||++++|+++||||||++||.++.+.+.++++
T Consensus 144 LS~Ge~qrv~l------------------------------------aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~ 187 (242)
T TIGR03411 144 LSHGQKQWLEI------------------------------------GMLLMQDPKLLLLDEPVAGMTDEETEKTAELLK 187 (242)
T ss_pred CCHHHHHHHHH------------------------------------HHHHhcCCCEEEecCCccCCCHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999988877665
Q ss_pred h--cCceEEEecCCCCchh-hccceEEEEcCC
Q 000647 1336 D--MGITFVTSSQRPALIP-FHSLELRLIDGE 1364 (1374)
Q Consensus 1336 ~--~~~TvI~IaHRl~~i~-~~~~~l~l~~g~ 1364 (1374)
+ .++|+|.|+|+++.+. +.|+++.|.+|+
T Consensus 188 ~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 219 (242)
T TIGR03411 188 SLAGKHSVVVVEHDMEFVRSIADKVTVLHQGS 219 (242)
T ss_pred HHhcCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 4 3789999999998775 689999996654
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=311.11 Aligned_cols=203 Identities=26% Similarity=0.344 Sum_probs=165.8
Q ss_pred EEEeeeEEeCCCc---ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc-----CCc
Q 000647 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSG 1171 (1374)
Q Consensus 1100 I~f~~V~~~yp~~---~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~-----~~r 1171 (1374)
|+|+||++.|+.. +.+++|+||++++||.++|+|+||||||||+++|.|+++|.+|+|.++|.++.... ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999988652 67999999999999999999999999999999999999999999999999887542 235
Q ss_pred ccEEEecCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc
Q 000647 1172 CGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1374)
Q Consensus 1172 ~~i~~VpQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~ 1250 (1374)
++++++||+|.+|. .|+.+|+.++....+. . ......+.+.++++.+++.+..+..
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~-~--------------~~~~~~~~~~~~l~~~~l~~~~~~~-------- 138 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPN-L--------------SYQEARERARAMLEAVGLGDHLDYY-------- 138 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccC-C--------------CHHHHHHHHHHHHHHcCChhhhhcC--------
Confidence 68999999999987 6999999754210000 0 0000122356677888876555443
Q ss_pred ccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHH
Q 000647 1251 NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL 1330 (1374)
Q Consensus 1251 ~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l 1330 (1374)
...||+|||||++| |||++++|+++||||||++||+++.+.+
T Consensus 139 --~~~lS~G~~qrv~l------------------------------------aral~~~p~illlDEP~~~LD~~~~~~l 180 (220)
T TIGR02982 139 --PHNLSGGQKQRVAI------------------------------------ARALVHRPKLVLADEPTAALDSKSGRDV 180 (220)
T ss_pred --hhhCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence 35699999999999 9999999999999999999999998877
Q ss_pred HHHHHh----cCceEEEecCCCCchhhccceEEEEcC
Q 000647 1331 YRLAKD----MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1331 ~~~~~~----~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
.+.+++ .++|+|+|+|+++.+.+.|+++.|.+|
T Consensus 181 ~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g 217 (220)
T TIGR02982 181 VELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDG 217 (220)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 765542 489999999999989999999999655
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=310.06 Aligned_cols=182 Identities=26% Similarity=0.320 Sum_probs=153.2
Q ss_pred EcCCCCeeeeeeeEEEe-----CCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCccccccEEEEecCCCC-Cc
Q 000647 453 VTPTGNVLVENLTLKVE-----PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT-AV 526 (1374)
Q Consensus 453 ~~~~~~~~l~~isl~i~-----~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~~~~~~i~~v~Q~p~l-~~ 526 (1374)
.||+....++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. +|+|+||++.. +.
T Consensus 2 ~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------~i~~~~q~~~~~~~ 75 (246)
T cd03237 2 TYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------TVSYKPQYIKADYE 75 (246)
T ss_pred CCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------eEEEecccccCCCC
Confidence 46665667788888886 79999999999999999999999999999999999873 69999999874 56
Q ss_pred CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCC
Q 000647 527 GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606 (1374)
Q Consensus 527 ~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEpt 606 (1374)
.|++||+.+...... .......++++.+++.+..++.+ .+||||||||++|||||+.+|+++||||||
T Consensus 76 ~tv~e~l~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~--------~~LSgGe~qrv~iaraL~~~p~llllDEPt 143 (246)
T cd03237 76 GTVRDLLSSITKDFY----THPYFKTEIAKPLQIEQILDREV--------PELSGGELQRVAIAACLSKDADIYLLDEPS 143 (246)
T ss_pred CCHHHHHHHHhhhcc----ccHHHHHHHHHHcCCHHHhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 899999975422110 11234567899999988777755 589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecCCCc
Q 000647 607 SAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGE 652 (1374)
Q Consensus 607 saLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~~g~ 652 (1374)
++||+.+...+.+.+++ .++|+|+|||+++.+. .+|++++++++.+
T Consensus 144 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 144 AYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPS 194 (246)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCe
Confidence 99999999998887764 3899999999999886 6999999987543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=314.93 Aligned_cols=207 Identities=23% Similarity=0.256 Sum_probs=163.8
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCC-----CCeEecCCCccccc----cCC
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVV-----SGSLTKPSQHIDEE----AGS 1170 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~-----~G~I~idg~dI~~~----~~~ 1170 (1374)
|+++||++.|++ ..+++|+||+|++||.++|+|+||||||||+++|.|+++|. +|+|.++|.++... ...
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGE-KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECC-eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 789999999875 46999999999999999999999999999999999999998 99999999988652 234
Q ss_pred cccEEEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc
Q 000647 1171 GCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1374)
Q Consensus 1171 r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~ 1250 (1374)
+++++||||+|.+|+.|++||+.++.... +.. .....++.+.++++.+++...+... ++.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~----------~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~---~~~-- 140 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLH----------GIK-----DKKELDEIVEESLKKAALWDEVKDR---LHD-- 140 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhc----------CCC-----CHHHHHHHHHHHHHHcCCCcchhhH---hhC--
Confidence 66899999999999999999997542100 000 0001123456678888875322110 111
Q ss_pred ccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHH
Q 000647 1251 NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL 1330 (1374)
Q Consensus 1251 ~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l 1330 (1374)
....||||||||++| ||||+++|+++||||||++||.++.+.+
T Consensus 141 -~~~~LSgG~~qrv~l------------------------------------aral~~~p~llllDEPt~~LD~~~~~~l 183 (247)
T TIGR00972 141 -SALGLSGGQQQRLCI------------------------------------ARALAVEPEVLLLDEPTSALDPIATGKI 183 (247)
T ss_pred -CcccCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 245799999999999 9999999999999999999999999888
Q ss_pred HHHHHh--cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1331 YRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1331 ~~~~~~--~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
.+++++ .++|+|+|+|+++.+ .+.|+++.|.+|+
T Consensus 184 ~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 220 (247)
T TIGR00972 184 EELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGE 220 (247)
T ss_pred HHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCE
Confidence 776653 358999999999755 6789999996654
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=322.98 Aligned_cols=200 Identities=19% Similarity=0.207 Sum_probs=162.5
Q ss_pred EEEeeeEEeCCCc----ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccc---------
Q 000647 1100 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE--------- 1166 (1374)
Q Consensus 1100 I~f~~V~~~yp~~----~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~--------- 1166 (1374)
|+++||++.|++. .++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 7899999999753 369999999999999999999999999999999999999999999999876531
Q ss_pred -----------------ccCCcccEEEecCCC--CCCCcchHHHhccCCC---hhHHHHHHHhhccCCCcccccCCCChH
Q 000647 1167 -----------------EAGSGCGIFYVPQRP--YTCLGTLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDS 1224 (1374)
Q Consensus 1167 -----------------~~~~r~~i~~VpQ~P--~Lf~GTlR~Nl~yp~~---~~e~~~~~~~~~~~~~~~~~~~~~~d~ 1224 (1374)
....|.+|+||||+| .+|..|++|||.++.. .+.++ .++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~-------------------~~~ 143 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEE-------------------AKK 143 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHH-------------------HHH
Confidence 123456799999987 6888899999986531 11110 123
Q ss_pred HHHHHHHhCCCc-hhhhhhccCCccccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCccccc
Q 000647 1225 YLKTILEGVRLS-YLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKA 1303 (1374)
Q Consensus 1225 ~l~~~L~~v~L~-~~v~~~~~Gldt~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 1303 (1374)
.+.++++.++|. ++.++. ...||||||||++| |
T Consensus 144 ~~~~~l~~~gL~~~~~~~~----------~~~LSgGqkqrval------------------------------------A 177 (305)
T PRK13651 144 RAAKYIELVGLDESYLQRS----------PFELSGGQKRRVAL------------------------------------A 177 (305)
T ss_pred HHHHHHHHcCCChhhhhCC----------hhhCCHHHHHHHHH------------------------------------H
Confidence 456778888874 333322 35799999999999 9
Q ss_pred ccccccCcEEEeeccCCCCCHHHHHHHHHHHH---hcCceEEEecCCCCc-hhhccceEEEEcCC
Q 000647 1304 RLFFHKPKFGILDECTNATSVDVEEQLYRLAK---DMGITFVTSSQRPAL-IPFHSLELRLIDGE 1364 (1374)
Q Consensus 1304 Rallr~PkillLDEaTSaLD~~~e~~l~~~~~---~~~~TvI~IaHRl~~-i~~~~~~l~l~~g~ 1364 (1374)
|||+.+|++|||||||++||.+..+.+.++++ +.|+|+|+|+|+++. ..+.|+++.+.+|+
T Consensus 178 ~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~ 242 (305)
T PRK13651 178 GILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGK 242 (305)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999887776554 358999999999964 57899999997653
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=308.04 Aligned_cols=198 Identities=20% Similarity=0.223 Sum_probs=161.9
Q ss_pred EEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecCC
Q 000647 1101 SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 1180 (1374)
Q Consensus 1101 ~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ~ 1180 (1374)
+++||++.|+. +++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.+||.++.+....++.++||||+
T Consensus 2 ~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 2 ALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred eEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 68999998863 568999999999999999999999999999999999999999999999887654456789999999
Q ss_pred CCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCChh
Q 000647 1181 PYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLG 1259 (1374)
Q Consensus 1181 P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSgG 1259 (1374)
|.+|.+ |++||+.++..... . .....++++.++++.+++.+...+. ...||+|
T Consensus 79 ~~~~~~~t~~en~~~~~~~~~---------~-------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~G 132 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPGL---------K-------LNAEQQEKVVDAAQQVGIADYLDRL----------PEQLSGG 132 (213)
T ss_pred CccCCCCcHHHHHHhHhhccC---------C-------ccHHHHHHHHHHHHHcCcHHHhhCC----------cccCCHH
Confidence 999975 99999976531000 0 0001133466788888886555443 2469999
Q ss_pred hhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh---
Q 000647 1260 EQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--- 1336 (1374)
Q Consensus 1260 QrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~--- 1336 (1374)
||||++| |||++++|+++||||||++||.++.+.+.+++++
T Consensus 133 ~~qrl~l------------------------------------aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 176 (213)
T TIGR01277 133 QRQRVAL------------------------------------ARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCS 176 (213)
T ss_pred HHHHHHH------------------------------------HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999999877775543
Q ss_pred -cCceEEEecCCCCch-hhccceEEEEcC
Q 000647 1337 -MGITFVTSSQRPALI-PFHSLELRLIDG 1363 (1374)
Q Consensus 1337 -~~~TvI~IaHRl~~i-~~~~~~l~l~~g 1363 (1374)
.++|+|+|+|++..+ .+.|+++.+.+|
T Consensus 177 ~~~~tii~vsh~~~~~~~~~d~v~~l~~g 205 (213)
T TIGR01277 177 ERQRTLLMVTHHLSDARAIASQIAVVSQG 205 (213)
T ss_pred hcCCEEEEEeCCHHHHHhhcCeEEEEECC
Confidence 389999999999765 568899999654
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=301.46 Aligned_cols=175 Identities=22% Similarity=0.309 Sum_probs=146.6
Q ss_pred cEEEeeeEEEcCC---CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCc---CCccEEEeCCCC-----cccc
Q 000647 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG-----SDLN 512 (1374)
Q Consensus 444 ~i~~~~v~~~~~~---~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~---~~~G~I~~~g~~-----~~~~ 512 (1374)
.+.++||+|.||. ++++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ ...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 4789999999985 4679999999999999999999999999999999999999 899999999864 1345
Q ss_pred ccEEEEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHH
Q 000647 513 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1374)
Q Consensus 513 ~~i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalAR 591 (1374)
+.++|+||++.++. .|++||+.++... . .++. ...||||||||++|||
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------------~-------~~~~--------~~~LS~Ge~qrl~lar 131 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRC----------------K-------GNEF--------VRGISGGERKRVSIAE 131 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhh----------------c-------cccc--------hhhCCHHHHHHHHHHH
Confidence 67999999998776 5999999764210 0 1222 2579999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---c-CCEEEEEc-cChhh-HhhccEEEEecC
Q 000647 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITIS-HRPAL-VAFHDVVLSLDG 649 (1374)
Q Consensus 592 al~~~p~illLDEptsaLD~~~~~~i~~~l~~---~-~~TiI~vt-H~~~~-~~~~d~il~l~~ 649 (1374)
|++++|+++||||||++||+++++.+++.+++ . +.|+|+++ |+.+. ...+|++++|++
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~ 195 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE 195 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC
Confidence 99999999999999999999999999888764 2 56666655 55554 468999999986
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=308.06 Aligned_cols=190 Identities=22% Similarity=0.277 Sum_probs=153.4
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCccccccEEEEecCCC-
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY- 523 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~~~~~~i~~v~Q~p~- 523 (1374)
+.++|+++.|. ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +....+.+.
T Consensus 23 l~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~------~~~~~~~~~~ 95 (224)
T cd03220 23 LGILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV------SSLLGLGGGF 95 (224)
T ss_pred hhhhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE------chhhcccccC
Confidence 66788888774 5789999999999999999999999999999999999999999999999853 111222222
Q ss_pred CCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000647 524 TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILD 603 (1374)
Q Consensus 524 l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLD 603 (1374)
.+..|++||+.++............+++.++++.+++.+..++.+ ..||||||||++||||++++|+++|||
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~laral~~~p~llllD 167 (224)
T cd03220 96 NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPV--------KTYSSGMKARLAFAIATALEPDILLID 167 (224)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 345799999986532111001112235677888899988777654 589999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 604 ECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 604 EptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|+++++++
T Consensus 168 EP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 217 (224)
T cd03220 168 EVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEK 217 (224)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999998887754 4789999999999875 7999999975
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=316.05 Aligned_cols=208 Identities=19% Similarity=0.206 Sum_probs=165.9
Q ss_pred CCCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc---------
Q 000647 1097 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--------- 1167 (1374)
Q Consensus 1097 ~g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--------- 1167 (1374)
.+.|+++||++.|++ +.+|+|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.++|.++...
T Consensus 3 ~~~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 3 ENKLNVIDLHKRYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred CccEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 467999999999975 5799999999999999999999999999999999999999999999999887531
Q ss_pred ------cCCcccEEEecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhh
Q 000647 1168 ------AGSGCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLE 1240 (1374)
Q Consensus 1168 ------~~~r~~i~~VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~ 1240 (1374)
...+.+++||||+|.+|++ |++||+.++... ..+. .....++.+.++++.+++.....
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~---------~~~~------~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ---------VLGL------SKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHH---------hCCC------CHHHHHHHHHHHHHHcCCChhhh
Confidence 1335679999999999975 999999753200 0000 00001234566777777754421
Q ss_pred hhccCCccccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCC
Q 000647 1241 REEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTN 1320 (1374)
Q Consensus 1241 ~~~~Gldt~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTS 1320 (1374)
. .....||+|||||++| ||||+++|+++||||||+
T Consensus 147 ~---------~~~~~LS~G~~qrv~l------------------------------------aral~~~p~llllDEPt~ 181 (257)
T PRK10619 147 G---------KYPVHLSGGQQQRVSI------------------------------------ARALAMEPEVLLFDEPTS 181 (257)
T ss_pred h---------CCcccCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCcc
Confidence 1 1246799999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHh---cCceEEEecCCCCchh-hccceEEEEcCCC
Q 000647 1321 ATSVDVEEQLYRLAKD---MGITFVTSSQRPALIP-FHSLELRLIDGEG 1365 (1374)
Q Consensus 1321 aLD~~~e~~l~~~~~~---~~~TvI~IaHRl~~i~-~~~~~l~l~~g~g 1365 (1374)
+||.++.+.+.+++++ .|+|+|+|+|+++.+. +.|+++.|.+|+-
T Consensus 182 ~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 182 ALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 9999999887776543 4899999999998776 5899999976653
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=297.89 Aligned_cols=197 Identities=28% Similarity=0.400 Sum_probs=168.0
Q ss_pred cEEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC-cc------ccccEE
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SD------LNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~-~~------~~~~i~ 516 (1374)
.++++++++.+ ++-.+++|+||++++||+++|+|||||||||++|+|.|+|+|++|+|.++|.+ .. .+..|+
T Consensus 4 lL~v~~l~k~F-GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 4 LLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeeccceeec-CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 47889999988 57889999999999999999999999999999999999999999999999975 11 245688
Q ss_pred EEecCCCCCcC-CHHHHhcCCCCCCc------------ccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhH
Q 000647 517 YVPQRPYTAVG-TLRDQLIYPLTSDQ------------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGE 583 (1374)
Q Consensus 517 ~v~Q~p~l~~~-Tv~eni~~~~~~~~------------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGq 583 (1374)
--+|.+-+|.+ ||.||+..+..... ..+....++..++|+.++|.+..++.. .+||+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A--------~~LsyG~ 154 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA--------GNLSYGQ 154 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh--------hcCChhH
Confidence 88999998875 99999987632110 011223456778899999999888754 6899999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 584 kQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
|+|+.|||||+.+|++|+||||.+||.+....++.+.+++ .|.|+++|.||+..+ ..||+|++|+.
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~ 225 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNY 225 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccC
Confidence 9999999999999999999999999999998888887654 469999999999987 58999999985
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=314.80 Aligned_cols=204 Identities=21% Similarity=0.244 Sum_probs=162.3
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc----------c
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE----------A 1168 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~----------~ 1168 (1374)
.|+++||++.|++ +.+++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... .
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFHG-QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 3889999999975 4699999999999999999999999999999999999999999999999987642 1
Q ss_pred CCcccEEEecCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCc
Q 000647 1169 GSGCGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWD 1247 (1374)
Q Consensus 1169 ~~r~~i~~VpQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gld 1247 (1374)
..|.+++||||+|.+|. .|++||+.++.... + .. ......+.+.++++.+++....+.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-------~--~~------~~~~~~~~~~~~l~~~gl~~~~~~------ 140 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV-------K--GE------PKEEATARARELLAKVGLAGKETS------ 140 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHh-------c--CC------CHHHHHHHHHHHHHHcCCcchhhC------
Confidence 34567999999999886 69999997531000 0 00 000012235566777776433222
Q ss_pred cccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHH
Q 000647 1248 ANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVE 1327 (1374)
Q Consensus 1248 t~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e 1327 (1374)
....||||||||++| ||||+++|+++||||||++||+++.
T Consensus 141 ----~~~~LS~Gq~qrv~l------------------------------------a~al~~~p~lllLDEPt~~LD~~~~ 180 (250)
T PRK11264 141 ----YPRRLSGGQQQRVAI------------------------------------ARALAMRPEVILFDEPTSALDPELV 180 (250)
T ss_pred ----ChhhCChHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCCccCCHHHH
Confidence 246799999999999 9999999999999999999999999
Q ss_pred HHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1328 EQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1328 ~~l~~~~~~---~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
+.+.+.+++ .|.|+|+|+|++..+ ++.|+++.+.+|+
T Consensus 181 ~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 221 (250)
T PRK11264 181 GEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGR 221 (250)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 888775543 489999999999776 5689999996654
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=297.93 Aligned_cols=165 Identities=31% Similarity=0.481 Sum_probs=147.8
Q ss_pred EEEeeeEEeCCCc-ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEE
Q 000647 1100 ISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFY 1176 (1374)
Q Consensus 1100 I~f~~V~~~yp~~-~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~ 1176 (1374)
|+++|+++.|++. +++++++||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.+. ...+++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 5789999999863 5799999999999999999999999999999999999999999999999988765 245678999
Q ss_pred ecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCC
Q 000647 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 1256 (1374)
Q Consensus 1177 VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~L 1256 (1374)
+||+|.+|++|++||+ |
T Consensus 81 ~~q~~~~~~~tv~~~l---------------------------------------------------------------L 97 (173)
T cd03246 81 LPQDDELFSGSIAENI---------------------------------------------------------------L 97 (173)
T ss_pred ECCCCccccCcHHHHC---------------------------------------------------------------c
Confidence 9999999888888764 5
Q ss_pred ChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh
Q 000647 1257 SLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD 1336 (1374)
Q Consensus 1257 SgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~ 1336 (1374)
|+|||||++| |||++++|+++||||||++||.++.+.+.+.+++
T Consensus 98 S~G~~qrv~l------------------------------------a~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 98 SGGQRQRLGL------------------------------------ARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141 (173)
T ss_pred CHHHHHHHHH------------------------------------HHHHhcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999887765543
Q ss_pred ---cCceEEEecCCCCchhhccceEEEEcC
Q 000647 1337 ---MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1337 ---~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
.|+|+|+++|++..+...|+++.+.+|
T Consensus 142 ~~~~~~tii~~sh~~~~~~~~d~v~~l~~G 171 (173)
T cd03246 142 LKAAGATRIVIAHRPETLASADRILVLEDG 171 (173)
T ss_pred HHhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 489999999999888888888888654
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=315.58 Aligned_cols=210 Identities=20% Similarity=0.199 Sum_probs=165.7
Q ss_pred CCCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCC-----CCCCeEecCCCccccc----
Q 000647 1097 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLTKPSQHIDEE---- 1167 (1374)
Q Consensus 1097 ~g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~-----~~~G~I~idg~dI~~~---- 1167 (1374)
.+.|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++ |.+|+|.++|.++...
T Consensus 11 ~~~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYGK-FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeCC-eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 577999999999975 469999999999999999999999999999999999986 4799999999988532
Q ss_pred cCCcccEEEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCc
Q 000647 1168 AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWD 1247 (1374)
Q Consensus 1168 ~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gld 1247 (1374)
..+|.+++|+||+|.+|+.|+++|+.++..... .. .....++.+.++++.+++...+... ++
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~---------~~------~~~~~~~~~~~~l~~~~l~~~~~~~---~~ 151 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFE---------KL------SRAEMDERVEWALTKAALWNEVKDK---LH 151 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcC---------CC------CHHHHHHHHHHHHHHcCCChhhHHH---Hh
Confidence 234678999999999999999999976421000 00 0000123456777777764322111 11
Q ss_pred cccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHH
Q 000647 1248 ANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVE 1327 (1374)
Q Consensus 1248 t~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e 1327 (1374)
.....||||||||++| ||||+++|+++||||||++||.++.
T Consensus 152 ---~~~~~LS~Gq~qrv~l------------------------------------aral~~~p~lllLDEPt~~LD~~~~ 192 (260)
T PRK10744 152 ---QSGYSLSGGQQQRLCI------------------------------------ARGIAIRPEVLLLDEPCSALDPIST 192 (260)
T ss_pred ---cCCCCCCHHHHHHHHH------------------------------------HHHHHCCCCEEEEcCCCccCCHHHH
Confidence 1246799999999999 9999999999999999999999999
Q ss_pred HHHHHHHHh--cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1328 EQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1328 ~~l~~~~~~--~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
+.+.+.+++ .+.|+|.|+|++..+ .+.|+++.+.+|+
T Consensus 193 ~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 232 (260)
T PRK10744 193 GRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGE 232 (260)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 887776653 478999999999766 6789999996553
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=320.85 Aligned_cols=200 Identities=22% Similarity=0.247 Sum_probs=161.5
Q ss_pred EEEeeeEEeCCCc----ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc------cC
Q 000647 1100 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE------AG 1169 (1374)
Q Consensus 1100 I~f~~V~~~yp~~----~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~------~~ 1169 (1374)
|+++||++.|++. +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 7899999999752 4799999999999999999999999999999999999999999999999988653 23
Q ss_pred CcccEEEecCCC--CCCCcchHHHhccCCCh---hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCch-hhhhhc
Q 000647 1170 SGCGIFYVPQRP--YTCLGTLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY-LLEREE 1243 (1374)
Q Consensus 1170 ~r~~i~~VpQ~P--~Lf~GTlR~Nl~yp~~~---~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~-~v~~~~ 1243 (1374)
+|++|+|+||+| .+|.+|+++|+.++... +.++ ..+.+.++++.++|.. ...+
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~-- 141 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEE-------------------AEALAREKLALVGISESLFEK-- 141 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHH-------------------HHHHHHHHHHHcCCChhhhhC--
Confidence 456799999998 68889999999754210 0000 0122445666666642 2211
Q ss_pred cCCccccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCC
Q 000647 1244 VGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATS 1323 (1374)
Q Consensus 1244 ~Gldt~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD 1323 (1374)
....||||||||++| ||||+++|+++||||||++||
T Consensus 142 --------~~~~LSgG~~qrv~l------------------------------------a~al~~~p~lllLDEPt~~LD 177 (280)
T PRK13649 142 --------NPFELSGGQMRRVAI------------------------------------AGILAMEPKILVLDEPTAGLD 177 (280)
T ss_pred --------CcccCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCcccCC
Confidence 245799999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1324 VDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1324 ~~~e~~l~~~~~~---~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
.++.+.+.+.+++ .|+|+|+|+|+++.+ .+.|+++.|.+|+
T Consensus 178 ~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~ 222 (280)
T PRK13649 178 PKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGK 222 (280)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCE
Confidence 9999887776543 489999999999866 6789999996553
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=313.36 Aligned_cols=203 Identities=25% Similarity=0.305 Sum_probs=162.0
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccc--------ccCCc
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE--------EAGSG 1171 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~--------~~~~r 1171 (1374)
|+++||++.|++ +.+++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.. ....|
T Consensus 3 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 3 IQLNGINCFYGA-HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEeeEEEECC-eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 789999999865 579999999999999999999999999999999999999999999999998731 12345
Q ss_pred ccEEEecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc
Q 000647 1172 CGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1374)
Q Consensus 1172 ~~i~~VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~ 1250 (1374)
++++|+||+|.+|.+ |++||+.+.... ..+. ......+++.++++.+++...+.+.
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~---------~~~~------~~~~~~~~~~~~l~~~gl~~~~~~~-------- 138 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCR---------VLGL------SKDQALARAEKLLERLRLKPYADRF-------- 138 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHH---------HcCC------CHHHHHHHHHHHHHHcCChhhhhCC--------
Confidence 689999999999976 999999642100 0000 0000122355677777775444332
Q ss_pred ccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHH
Q 000647 1251 NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL 1330 (1374)
Q Consensus 1251 ~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l 1330 (1374)
...||||||||++| |||++++|+++||||||++||.++.+.+
T Consensus 139 --~~~LS~G~~qrv~l------------------------------------aral~~~p~llilDEPt~~LD~~~~~~l 180 (242)
T PRK11124 139 --PLHLSGGQQQRVAI------------------------------------ARALMMEPQVLLFDEPTAALDPEITAQI 180 (242)
T ss_pred --hhhCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCCCcCCHHHHHHH
Confidence 35799999999999 9999999999999999999999999887
Q ss_pred HHHHHh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1331 YRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1331 ~~~~~~---~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
.+.+++ .|.|+|+|+|++..+ .+.|+++.+.+|+
T Consensus 181 ~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 218 (242)
T PRK11124 181 VSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGH 218 (242)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 776543 489999999999876 5688999996654
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=310.24 Aligned_cols=199 Identities=22% Similarity=0.291 Sum_probs=163.2
Q ss_pred CCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc--CCcccEE
Q 000647 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIF 1175 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~--~~r~~i~ 1175 (1374)
..|+++||++.|++ +++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++...+ .++++++
T Consensus 6 ~~i~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 6 PLLQLQNVGYLAGD-AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred ceEEEeccEEeeCC-ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 35899999998864 56999999999999999999999999999999999999999999999999887652 3466899
Q ss_pred EecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCch-hhhhhccCCcccccccc
Q 000647 1176 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY-LLEREEVGWDANLNWED 1254 (1374)
Q Consensus 1176 ~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~-~v~~~~~Gldt~~~~g~ 1254 (1374)
|+||+|.+|+.|++||+.++... ... ...++.+.++++.+++.+ +..+ ...
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~----------~~~--------~~~~~~~~~~l~~~~l~~~~~~~----------~~~ 136 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQI----------RNQ--------QPDPAIFLDDLERFALPDTILTK----------NIA 136 (225)
T ss_pred EEecccccccccHHHHHHhHHhh----------cCC--------ChHHHHHHHHHHHcCCChHHhcC----------Ccc
Confidence 99999999999999999764210 000 001233556777777742 2211 245
Q ss_pred CCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHH
Q 000647 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1334 (1374)
Q Consensus 1255 ~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~ 1334 (1374)
.||+|||||++| ||||+++|+++||||||++||..+.+.+.+.+
T Consensus 137 ~LS~G~~qrv~l------------------------------------aral~~~p~llllDEPt~~LD~~~~~~l~~~l 180 (225)
T PRK10247 137 ELSGGEKQRISL------------------------------------IRNLQFMPKVLLLDEITSALDESNKHNVNEII 180 (225)
T ss_pred cCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 799999999999 99999999999999999999999988776654
Q ss_pred Hh----cCceEEEecCCCCchhhccceEEEE
Q 000647 1335 KD----MGITFVTSSQRPALIPFHSLELRLI 1361 (1374)
Q Consensus 1335 ~~----~~~TvI~IaHRl~~i~~~~~~l~l~ 1361 (1374)
++ .|.|+|+|+|+++.++..|+++.|.
T Consensus 181 ~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~ 211 (225)
T PRK10247 181 HRYVREQNIAVLWVTHDKDEINHADKVITLQ 211 (225)
T ss_pred HHHHHhcCCEEEEEECChHHHHhCCEEEEEe
Confidence 42 4899999999998888899999983
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=298.67 Aligned_cols=162 Identities=34% Similarity=0.491 Sum_probs=140.2
Q ss_pred EEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc------cccccEEEEe
Q 000647 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIFYVP 519 (1374)
Q Consensus 446 ~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~------~~~~~i~~v~ 519 (1374)
+++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++|+|
T Consensus 1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 46899999864 6799999999999999999999999999999999999999999999988531 1223455555
Q ss_pred cCCCCCcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCE
Q 000647 520 QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1374)
Q Consensus 520 Q~p~l~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1374)
| +++.+++.++.++.+ .+||||||||++||||++.+|++
T Consensus 80 q---------------------------------~l~~~gl~~~~~~~~--------~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 80 Q---------------------------------ALELLGLAHLADRPF--------NELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred H---------------------------------HHHHcCCHhHhcCCc--------ccCCHHHHHHHHHHHHHhcCCCE
Confidence 5 678888887776654 68999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHh---c-CCEEEEEccChhhH-hhccEEEEecC
Q 000647 600 AILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 600 llLDEptsaLD~~~~~~i~~~l~~---~-~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+||||||++||+++.+.+++.+++ . ++|+|++||+++.+ ..+|+++++++
T Consensus 119 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~ 173 (180)
T cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKD 173 (180)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999887754 3 78999999999987 67999999975
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=311.54 Aligned_cols=202 Identities=24% Similarity=0.285 Sum_probs=165.3
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecC
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ 1179 (1374)
|+++|+++.|++ +.+|+|+||+|.+||.++|+||||||||||+++|.|+++|.+|+|.+||.++......+.+++|+||
T Consensus 1 i~i~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFGS-FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEECC-eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 578999999975 4699999999999999999999999999999999999999999999999988765445668999999
Q ss_pred CCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCCh
Q 000647 1180 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1374)
Q Consensus 1180 ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSg 1258 (1374)
+|.+|++ |++||+.+..... .. .....++++.++++.+++....++. ...||+
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~lS~ 133 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIR----------KH------PKAKIKARVEELLELVQLEGLGDRY----------PNQLSG 133 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhc----------CC------CHHHHHHHHHHHHHHcCCHhHhhCC----------hhhCCH
Confidence 9999976 9999997542100 00 0001123456777877775544332 256999
Q ss_pred hhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--
Q 000647 1259 GEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD-- 1336 (1374)
Q Consensus 1259 GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~-- 1336 (1374)
|||||++| |||++++|+++||||||++||.++.+.+.+++++
T Consensus 134 G~~qrl~l------------------------------------aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~ 177 (237)
T TIGR00968 134 GQRQRVAL------------------------------------ARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLH 177 (237)
T ss_pred HHHHHHHH------------------------------------HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999888776543
Q ss_pred -c-CceEEEecCCCCc-hhhccceEEEEcCC
Q 000647 1337 -M-GITFVTSSQRPAL-IPFHSLELRLIDGE 1364 (1374)
Q Consensus 1337 -~-~~TvI~IaHRl~~-i~~~~~~l~l~~g~ 1364 (1374)
. ++|+|+++|+++. .+..|+++.|.+|+
T Consensus 178 ~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~ 208 (237)
T TIGR00968 178 DEVHVTTVFVTHDQEEAMEVADRIVVMSNGK 208 (237)
T ss_pred HhcCCEEEEEeCCHHHHHhhcCEEEEEECCE
Confidence 3 8999999999986 56789999996554
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=319.37 Aligned_cols=204 Identities=19% Similarity=0.221 Sum_probs=167.4
Q ss_pred CEEEeeeEEeCCC-----cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc---cCC
Q 000647 1099 SISFSKLDIITPS-----QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE---AGS 1170 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~-----~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~---~~~ 1170 (1374)
-|+++||++.|++ .+++|+|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.++|.++.+. ...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 4899999999975 35799999999999999999999999999999999999999999999999988753 234
Q ss_pred cccEEEecCCCC--CCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcc
Q 000647 1171 GCGIFYVPQRPY--TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1374)
Q Consensus 1171 r~~i~~VpQ~P~--Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt 1248 (1374)
|++++||||+|. +|.-|+++|+.++.... +. .....++.+.++++.++|.++..+.
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~gL~~~~~~~------ 141 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENL----------GI------PPEEIRERVDESLKKVGMYEYRRHA------ 141 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhc----------CC------CHHHHHHHHHHHHHHCCCHhHhhCC------
Confidence 678999999994 67668999997652100 00 0001133467788888887665543
Q ss_pred ccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHH
Q 000647 1249 NLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEE 1328 (1374)
Q Consensus 1249 ~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~ 1328 (1374)
...||+|||||++| ||||+++|+++||||||++||+.+.+
T Consensus 142 ----~~~LS~G~~qrv~l------------------------------------aral~~~p~llllDEPt~gLD~~~~~ 181 (280)
T PRK13633 142 ----PHLLSGGQKQRVAI------------------------------------AGILAMRPECIIFDEPTAMLDPSGRR 181 (280)
T ss_pred ----cccCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 35699999999999 99999999999999999999999998
Q ss_pred HHHHHHHh----cCceEEEecCCCCchhhccceEEEEcCC
Q 000647 1329 QLYRLAKD----MGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1329 ~l~~~~~~----~~~TvI~IaHRl~~i~~~~~~l~l~~g~ 1364 (1374)
.+.+.+++ .|+|+|+|+|+++.+...++++.|.+|+
T Consensus 182 ~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~ 221 (280)
T PRK13633 182 EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGK 221 (280)
T ss_pred HHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCE
Confidence 88776543 4899999999998888899999996553
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=321.10 Aligned_cols=205 Identities=18% Similarity=0.162 Sum_probs=161.8
Q ss_pred CCCEEEeeeEEeCCCc----ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccc------
Q 000647 1097 QDSISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE------ 1166 (1374)
Q Consensus 1097 ~g~I~f~~V~~~yp~~----~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~------ 1166 (1374)
.|.|+++||+++|++. .++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++..
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 5789999999999764 369999999999999999999999999999999999999999999999988742
Q ss_pred -ccCCcccEEEecCCC--CCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCc-hhhhhh
Q 000647 1167 -EAGSGCGIFYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLERE 1242 (1374)
Q Consensus 1167 -~~~~r~~i~~VpQ~P--~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~-~~v~~~ 1242 (1374)
...+|++|+||||+| .+|.+|+++|+.++.... +. ......+.+.++++.++|. .+..+
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----------~~------~~~~~~~~~~~ll~~~~L~~~~~~~- 146 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL----------GE------NKQEAYKKVPELLKLVQLPEDYVKR- 146 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc----------CC------CHHHHHHHHHHHHHHcCCChhHhcC-
Confidence 123466899999999 477889999997642100 00 0000012244566666652 22211
Q ss_pred ccCCccccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCC
Q 000647 1243 EVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNAT 1322 (1374)
Q Consensus 1243 ~~Gldt~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaL 1322 (1374)
....||||||||++| ||||+++|++|||||||++|
T Consensus 147 ---------~~~~LS~Gq~qrv~l------------------------------------aral~~~p~lLlLDEPt~~L 181 (289)
T PRK13645 147 ---------SPFELSGGQKRRVAL------------------------------------AGIIAMDGNTLVLDEPTGGL 181 (289)
T ss_pred ---------ChhhCCHHHHHHHHH------------------------------------HHHHHhCCCEEEEeCCcccC
Confidence 246799999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcC
Q 000647 1323 SVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDG 1363 (1374)
Q Consensus 1323 D~~~e~~l~~~~~~----~~~TvI~IaHRl~~i-~~~~~~l~l~~g 1363 (1374)
|.++.+.+.+++++ .|+|+|+|+|+++.+ ++.|+++.+.+|
T Consensus 182 D~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G 227 (289)
T PRK13645 182 DPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEG 227 (289)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 99999887765442 489999999999764 678999999655
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=315.29 Aligned_cols=209 Identities=21% Similarity=0.234 Sum_probs=165.4
Q ss_pred CCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCC-----CCCeEecCCCccccc----c
Q 000647 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV-----VSGSLTKPSQHIDEE----A 1168 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~-----~~G~I~idg~dI~~~----~ 1168 (1374)
..|+++||++.|++ +.+++|+||+|++||.++|+|+||||||||+++|.|+++| .+|+|.++|.++... .
T Consensus 6 ~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 6 AIIETENLNLFYTD-FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred ceEEEeeeEEEeCC-ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 46999999999865 5699999999999999999999999999999999999997 489999999987532 2
Q ss_pred CCcccEEEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcc
Q 000647 1169 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1374)
Q Consensus 1169 ~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt 1248 (1374)
..|++++||||+|.+|..|++|||.++.... +.. .....++.+.++++.+++...+. +.+++
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~----------~~~-----~~~~~~~~~~~~l~~~~l~~~l~---~~~~~ 146 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIH----------GTK-----DKKKLDEIVEQSLKKSALWNEVK---DKLNT 146 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhc----------CCC-----CHHHHHHHHHHHHHHhCCchhhH---HHHhC
Confidence 3466899999999999999999997652100 000 00001234566777777643221 23343
Q ss_pred ccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHH
Q 000647 1249 NLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEE 1328 (1374)
Q Consensus 1249 ~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~ 1328 (1374)
. ...||||||||++| ||||+++|+++||||||++||..+.+
T Consensus 147 ~---~~~LSgG~~qrv~l------------------------------------aral~~~p~lllLDEPt~~LD~~~~~ 187 (254)
T PRK14273 147 N---ALSLSGGQQQRLCI------------------------------------ARTLAIEPNVILMDEPTSALDPISTG 187 (254)
T ss_pred C---cccCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCCcccCHHHHH
Confidence 3 46799999999999 99999999999999999999999998
Q ss_pred HHHHHHHh--cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1329 QLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1329 ~l~~~~~~--~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
.+.+++++ .++|+|+|+|+++.+ .+.|+++.|.+|+
T Consensus 188 ~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~ 226 (254)
T PRK14273 188 KIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGC 226 (254)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 87776553 478999999999875 6689999996554
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=306.40 Aligned_cols=195 Identities=21% Similarity=0.218 Sum_probs=156.8
Q ss_pred EeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc------CCcccEE
Q 000647 1102 FSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------GSGCGIF 1175 (1374)
Q Consensus 1102 f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~------~~r~~i~ 1175 (1374)
++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.+++.+. ..+++++
T Consensus 1 i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGD-KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECC-EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 3689998875 57999999999999999999999999999999999999999999999999876431 2456799
Q ss_pred EecCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccccccc
Q 000647 1176 YVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1374)
Q Consensus 1176 ~VpQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~ 1254 (1374)
++||+|.+|. .|++||+.++.... +. .....++++.++++.+++.+..++. ..
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~ 133 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYK----------KL------SKKEKREKKKEALEKVGLNLKLKQK----------IY 133 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhc----------CC------CHHHHHHHHHHHHHHcCchhhhcCC----------hh
Confidence 9999999987 69999997532100 00 0001123456778877775443322 35
Q ss_pred CCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHH
Q 000647 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1334 (1374)
Q Consensus 1255 ~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~ 1334 (1374)
.||+|||||++| ||||+++|+++||||||++||.++.+.+.+++
T Consensus 134 ~lS~G~~qr~~l------------------------------------aral~~~p~llllDEPt~~LD~~~~~~l~~~l 177 (206)
T TIGR03608 134 ELSGGEQQRVAL------------------------------------ARAILKDPPLILADEPTGSLDPKNRDEVLDLL 177 (206)
T ss_pred hCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHH
Confidence 699999999999 99999999999999999999999998887766
Q ss_pred Hh---cCceEEEecCCCCchhhccceEE
Q 000647 1335 KD---MGITFVTSSQRPALIPFHSLELR 1359 (1374)
Q Consensus 1335 ~~---~~~TvI~IaHRl~~i~~~~~~l~ 1359 (1374)
++ .|.|+|+|+|++..+...++++.
T Consensus 178 ~~~~~~~~tii~~sh~~~~~~~~d~i~~ 205 (206)
T TIGR03608 178 LELNDEGKTIIIVTHDPEVAKQADRVIE 205 (206)
T ss_pred HHHHhcCCEEEEEeCCHHHHhhcCEEEe
Confidence 53 48999999999988877777654
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=321.40 Aligned_cols=199 Identities=23% Similarity=0.292 Sum_probs=161.3
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc-cCCcccEEEe
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYV 1177 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~-~~~r~~i~~V 1177 (1374)
.|+++||++.|++ ..+|+|+||+|++||.+||+||||||||||+++|.|+++|.+|+|.++|.++... ...|.+++||
T Consensus 4 ~i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 4 AIDLVGVSKSYGD-KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred EEEEEeEEEEeCC-eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 5899999999865 5699999999999999999999999999999999999999999999999987644 2346789999
Q ss_pred cCCCCCCC-cchHHHhccCCC---hhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccc
Q 000647 1178 PQRPYTCL-GTLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1374)
Q Consensus 1178 pQ~P~Lf~-GTlR~Nl~yp~~---~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g 1253 (1374)
||+|.++. .|++||+.+... .++.+ ..+.+.++++.++|.+..++ . .
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~-------------------~~~~~~~ll~~~~l~~~~~~-------~---~ 133 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGRYFGMSTRE-------------------IEAVIPSLLEFARLESKADV-------R---V 133 (303)
T ss_pred eccccCCcCCcHHHHHHHHHHHcCCCHHH-------------------HHHHHHHHHHHCCChhHhcC-------c---h
Confidence 99999885 699999964210 00000 01234456777776543322 2 3
Q ss_pred cCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHH
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL 1333 (1374)
Q Consensus 1254 ~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~ 1333 (1374)
..||||||||++| ||||+++|+++||||||++||+.+.+.+.++
T Consensus 134 ~~LSgG~~qrv~l------------------------------------a~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 177 (303)
T TIGR01288 134 ALLSGGMKRRLTL------------------------------------ARALINDPQLLILDEPTTGLDPHARHLIWER 177 (303)
T ss_pred hhCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 5699999999999 9999999999999999999999999887776
Q ss_pred HHh---cCceEEEecCCCCch-hhccceEEEEcC
Q 000647 1334 AKD---MGITFVTSSQRPALI-PFHSLELRLIDG 1363 (1374)
Q Consensus 1334 ~~~---~~~TvI~IaHRl~~i-~~~~~~l~l~~g 1363 (1374)
+++ .|+|+|.++|+++.+ ++.|+++.|.+|
T Consensus 178 l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G 211 (303)
T TIGR01288 178 LRSLLARGKTILLTTHFMEEAERLCDRLCVLESG 211 (303)
T ss_pred HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 543 489999999999766 578999988654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-29 Score=281.10 Aligned_cols=237 Identities=20% Similarity=0.218 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCccCCCCcEEEeeeEEEcCCCCeeeeeeeEEEeC
Q 000647 391 QSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEP 470 (1374)
Q Consensus 391 ~~l~~~~~~~~~l~~~~~~~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~isl~i~~ 470 (1374)
.++..++.....+.....++++|.++-..+.... -... ...++-..++++||.|.|++...-+..+|++|++
T Consensus 277 ~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~--~~~~------q~~p~~~~lelrnvrfay~~~~FhvgPiNl~ikr 348 (546)
T COG4615 277 TPLLSAVGILPTLLTAQVAFNKIAKLELAPYKAD--FPRP------QAFPDWKTLELRNVRFAYQDNAFHVGPINLTIKR 348 (546)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcccc--CCCC------CcCCcccceeeeeeeeccCcccceecceeeEEec
Confidence 3444444455566777888899987644222111 0111 1122234699999999998776778999999999
Q ss_pred CCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCC------ccccccEEEEecCCCCCcCCHHHHhcCCCCCCcccC
Q 000647 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 544 (1374)
Q Consensus 471 Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~------~~~~~~i~~v~Q~p~l~~~Tv~eni~~~~~~~~~~~ 544 (1374)
||++.|+|.|||||||++++|.|++.|++|+|.+||.+ +++|+-++-|+-|-|+|..+ .-+. .
T Consensus 349 GelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~l-----l~~e------~ 417 (546)
T COG4615 349 GELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQL-----LGPE------G 417 (546)
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhh-----hCCc------c
Confidence 99999999999999999999999999999999999964 34666677777777776532 2221 1
Q ss_pred CCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH----
Q 000647 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK---- 620 (1374)
Q Consensus 545 ~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~---- 620 (1374)
..+.+.+...|+++.+.+...-.. +.- -.-.||-|||+|+|+--|++-+.||+++||=-+--||.-++..|+.
T Consensus 418 ~as~q~i~~~LqrLel~~ktsl~d-~~f--s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~ 494 (546)
T COG4615 418 KASPQLIEKWLQRLELAHKTSLND-GRF--SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPL 494 (546)
T ss_pred CCChHHHHHHHHHHHHhhhhcccC-Ccc--cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHH
Confidence 145667778888877766543221 100 0146999999999999999999999999999999999999998875
Q ss_pred HHhcCCEEEEEccChhhHhhccEEEEecC
Q 000647 621 VRAMGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 621 l~~~~~TiI~vtH~~~~~~~~d~il~l~~ 649 (1374)
+++.|+||+.||||-.....+||++.+.+
T Consensus 495 LK~qGKTI~aIsHDd~YF~~ADrll~~~~ 523 (546)
T COG4615 495 LKEQGKTIFAISHDDHYFIHADRLLEMRN 523 (546)
T ss_pred HHHhCCeEEEEecCchhhhhHHHHHHHhc
Confidence 46789999999999999999999999975
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=311.13 Aligned_cols=202 Identities=21% Similarity=0.274 Sum_probs=164.9
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecC
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ 1179 (1374)
|+++|+++.|++ +.+++|+||+|+|||.++|+||||||||||+++|.|+++|.+|+|+++|+++......+..++++||
T Consensus 1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 478999999975 5799999999999999999999999999999999999999999999999988766434567999999
Q ss_pred CCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCCh
Q 000647 1180 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1374)
Q Consensus 1180 ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSg 1258 (1374)
+|.+|.+ |+++|+.++.... +. .....++++.++++.+++.+++.+. ...||+
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~lS~ 133 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLK----------KL------PKAEIKERVAEALDLVQLEGYANRK----------PSQLSG 133 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhc----------CC------CHHHHHHHHHHHHHHcCCchhhcCC----------hhhCCH
Confidence 9999976 9999997542100 00 0001123456677777776555443 256999
Q ss_pred hhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--
Q 000647 1259 GEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD-- 1336 (1374)
Q Consensus 1259 GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~-- 1336 (1374)
|||||++| |||++++|+++||||||++||+++.+.+++++++
T Consensus 134 G~~qrl~l------------------------------------aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~ 177 (232)
T cd03300 134 GQQQRVAI------------------------------------ARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQ 177 (232)
T ss_pred HHHHHHHH------------------------------------HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999888776543
Q ss_pred --cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1337 --MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1337 --~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
.|+|+|+++|++..+ ...|+++.|.+|.
T Consensus 178 ~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~ 208 (232)
T cd03300 178 KELGITFVFVTHDQEEALTMSDRIAVMNKGK 208 (232)
T ss_pred HHcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 389999999999865 5689999996553
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=312.66 Aligned_cols=199 Identities=25% Similarity=0.349 Sum_probs=157.2
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc---CCcccEEE
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIFY 1176 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~---~~r~~i~~ 1176 (1374)
|+++||++.|++ +++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..+++++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQ-SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCC-eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 578999999975 57999999999999999999999999999999999999999999999999887652 23457999
Q ss_pred ecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCC-CchhhhhhccCCcccccccc
Q 000647 1177 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR-LSYLLEREEVGWDANLNWED 1254 (1374)
Q Consensus 1177 VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~-L~~~v~~~~~Gldt~~~~g~ 1254 (1374)
+||+|.+|.+ |+++|+.++..... . ...+...++++.++ +.+.. + ....
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~----------~---------~~~~~~~~~l~~~~~l~~~~-------~---~~~~ 130 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALP----------R---------RSRKIPDEIYELFPVLKEML-------G---RRGG 130 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcC----------c---------chHHHHHHHHHHHHhHHHHh-------h---CChh
Confidence 9999999987 99999976431100 0 00111233343332 11111 1 1245
Q ss_pred CCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHH
Q 000647 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1334 (1374)
Q Consensus 1255 ~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~ 1334 (1374)
.||||||||++| |||++++|+++||||||++||..+.+.+.+++
T Consensus 131 ~LS~G~~qrv~l------------------------------------a~al~~~p~illlDEPt~~LD~~~~~~l~~~l 174 (230)
T TIGR03410 131 DLSGGQQQQLAI------------------------------------ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVI 174 (230)
T ss_pred hCCHHHHHHHHH------------------------------------HHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 799999999999 99999999999999999999999998877765
Q ss_pred Hh----cCceEEEecCCCCchh-hccceEEEEcCC
Q 000647 1335 KD----MGITFVTSSQRPALIP-FHSLELRLIDGE 1364 (1374)
Q Consensus 1335 ~~----~~~TvI~IaHRl~~i~-~~~~~l~l~~g~ 1364 (1374)
++ .++|+|.|+|+++.+. +.++++.+.+|+
T Consensus 175 ~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~ 209 (230)
T TIGR03410 175 RRLRAEGGMAILLVEQYLDFARELADRYYVMERGR 209 (230)
T ss_pred HHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 43 3899999999998776 689999996543
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=304.08 Aligned_cols=195 Identities=24% Similarity=0.298 Sum_probs=160.3
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc-cCCcccEEEec
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVP 1178 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~-~~~r~~i~~Vp 1178 (1374)
|+++|+++.|+. +.+++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ...+++++++|
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 2 LEARNLACERDE-RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred eEEEEEEEEECC-EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 689999998865 5699999999999999999999999999999999999999999999999988755 34466799999
Q ss_pred CCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCC
Q 000647 1179 QRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1374)
Q Consensus 1179 Q~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LS 1257 (1374)
|+|.+++ .|++||+.++.... + ...++++.++++.+++.+..++. ...||
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~----------~---------~~~~~~~~~~l~~~gl~~~~~~~----------~~~LS 131 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLH----------G---------PGDDEALWEALAQVGLAGFEDVP----------VRQLS 131 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhc----------C---------ccHHHHHHHHHHHcCCHHHhhCC----------hhhcC
Confidence 9998876 59999997542100 0 01234567788888886543321 35699
Q ss_pred hhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh-
Q 000647 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD- 1336 (1374)
Q Consensus 1258 gGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~- 1336 (1374)
+|||||++| |||++++|+++||||||++||.++.+.+.+++++
T Consensus 132 ~G~~qrl~l------------------------------------a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 175 (204)
T PRK13538 132 AGQQRRVAL------------------------------------ARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQH 175 (204)
T ss_pred HHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999888776543
Q ss_pred --cCceEEEecCCCCch-hhccceEEE
Q 000647 1337 --MGITFVTSSQRPALI-PFHSLELRL 1360 (1374)
Q Consensus 1337 --~~~TvI~IaHRl~~i-~~~~~~l~l 1360 (1374)
.+.|+|+|+|+++.+ .+..+++++
T Consensus 176 ~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 176 AEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHCCCEEEEEecChhhhccCCceEEec
Confidence 489999999999887 555555555
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=311.64 Aligned_cols=203 Identities=23% Similarity=0.308 Sum_probs=162.9
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc----cCCcccEE
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE----AGSGCGIF 1175 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~----~~~r~~i~ 1175 (1374)
|+++|+++.|++ +.+++|+||+|+|||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ...+++++
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFGP-TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEECC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 689999998864 5799999999999999999999999999999999999999999999999988653 23466799
Q ss_pred EecCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccccccc
Q 000647 1176 YVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1374)
Q Consensus 1176 ~VpQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~ 1254 (1374)
|+||+|.+|. .|+++|+.++.... .+. .....++.+.++++.+++.+...+. ..
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~---------~~~------~~~~~~~~~~~~l~~~gl~~~~~~~----------~~ 135 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRV---------RGA------SKEEAEKQARELLAKVGLAERAHHY----------PS 135 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHh---------cCC------CHHHHHHHHHHHHHHcCChHHHhcC----------hh
Confidence 9999999886 59999997642100 000 0000123355677777765443332 35
Q ss_pred CCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHH
Q 000647 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1334 (1374)
Q Consensus 1255 ~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~ 1334 (1374)
.||+|||||++| |||++++|++++|||||++||.++.+.+.+++
T Consensus 136 ~LS~G~~qrv~l------------------------------------a~al~~~p~llllDEP~~~LD~~~~~~l~~~l 179 (240)
T PRK09493 136 ELSGGQQQRVAI------------------------------------ARALAVKPKLMLFDEPTSALDPELRHEVLKVM 179 (240)
T ss_pred hcCHHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 799999999999 99999999999999999999999998887765
Q ss_pred Hh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1335 KD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1335 ~~---~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
++ .+.|+|+|+|++..+ .+.|+++.+.+|+
T Consensus 180 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 213 (240)
T PRK09493 180 QDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGR 213 (240)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 43 489999999999877 4688888986553
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=315.82 Aligned_cols=207 Identities=23% Similarity=0.284 Sum_probs=165.3
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEE
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFY 1176 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~ 1176 (1374)
.|+++||++.|++ +.+|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ..+++.++|
T Consensus 11 ~l~i~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 11 TFALRNVSFRVPG-RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred eEEEeeEEEEECC-EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 5899999999975 5799999999999999999999999999999999999999999999999988654 244567999
Q ss_pred ecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccC
Q 000647 1177 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1374)
Q Consensus 1177 VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~ 1255 (1374)
+||+|.++.+ |+++|+.++...... ..+. .....++.+.++++.+++.+.+.+. ...
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~------~~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~ 147 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWHG------ALGR------FGAADREKVEEAISLVGLKPLAHRL----------VDS 147 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccccc------cccC------CCHHHHHHHHHHHHHcCCHHHhcCC----------ccc
Confidence 9999887665 999999865320000 0000 0001134467788888875544332 246
Q ss_pred CChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH
Q 000647 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1335 (1374)
Q Consensus 1256 LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~ 1335 (1374)
||||||||++| |||++.+|+++||||||++||.++.+.+.+.++
T Consensus 148 LSgG~~qrv~l------------------------------------aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~ 191 (265)
T PRK10575 148 LSGGERQRAWI------------------------------------AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVH 191 (265)
T ss_pred CCHHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999887766553
Q ss_pred h----cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1336 D----MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1336 ~----~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
+ .|+|+|+|+|+++.+ ++.|+++.|.+|+
T Consensus 192 ~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~ 225 (265)
T PRK10575 192 RLSQERGLTVIAVLHDINMAARYCDYLVALRGGE 225 (265)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 2 389999999999877 5788999996543
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=318.67 Aligned_cols=201 Identities=22% Similarity=0.273 Sum_probs=165.7
Q ss_pred CEEEeeeEEeCCC--cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccE
Q 000647 1099 SISFSKLDIITPS--QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGI 1174 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~--~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i 1174 (1374)
-|+++||++.|+. .+++|+|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.++|.++... ...+.++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 4899999999975 35699999999999999999999999999999999999999999999999988754 2346689
Q ss_pred EEecCCC--CCCCcchHHHhccCCCh---hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccc
Q 000647 1175 FYVPQRP--YTCLGTLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 1249 (1374)
Q Consensus 1175 ~~VpQ~P--~Lf~GTlR~Nl~yp~~~---~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~ 1249 (1374)
+||||+| .++..|+.+||.++... ..++ ..+.+.++++.++|.++..+.
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~------- 137 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREE-------------------MIKRVDEALLAVNMLDFKTRE------- 137 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHH-------------------HHHHHHHHHHHCCCHhHhhCC-------
Confidence 9999999 36788999999765210 0000 012355677878876554332
Q ss_pred cccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHH
Q 000647 1250 LNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQ 1329 (1374)
Q Consensus 1250 ~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~ 1329 (1374)
...||||||||++| ||||+++|+++||||||++||+.+.+.
T Consensus 138 ---~~~LS~G~~qrv~l------------------------------------AraL~~~p~llllDEPt~~LD~~~~~~ 178 (277)
T PRK13642 138 ---PARLSGGQKQRVAV------------------------------------AGIIALRPEIIILDESTSMLDPTGRQE 178 (277)
T ss_pred ---cccCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 35699999999999 999999999999999999999999988
Q ss_pred HHHHHH----hcCceEEEecCCCCchhhccceEEEEcCC
Q 000647 1330 LYRLAK----DMGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1330 l~~~~~----~~~~TvI~IaHRl~~i~~~~~~l~l~~g~ 1364 (1374)
+.++++ +.|+|+|.|+|++..+...|+++.|.+|.
T Consensus 179 l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~ 217 (277)
T PRK13642 179 IMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGE 217 (277)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCE
Confidence 777653 23899999999998888899999996553
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=314.69 Aligned_cols=208 Identities=18% Similarity=0.207 Sum_probs=163.6
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCC-----CCCCeEecCCCccccc----cC
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLTKPSQHIDEE----AG 1169 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~-----~~~G~I~idg~dI~~~----~~ 1169 (1374)
.|+++||+++|++ +.+|+|+||+|++||.++|+||||||||||+++|.|+++ |.+|+|.++|.++... ..
T Consensus 6 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 6 KMEARGLSFFYGD-FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred EEEEeeeEEEECC-eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 4899999999964 569999999999999999999999999999999999974 5899999999988642 23
Q ss_pred CcccEEEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccc
Q 000647 1170 SGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 1249 (1374)
Q Consensus 1170 ~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~ 1249 (1374)
.|++++||||+|.+|.+|++||+.++.... +.. .....++++.++++.+++.+.+... ++
T Consensus 85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~----------~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~---~~-- 144 (253)
T PRK14242 85 LRRRVGMVFQKPNPFPKSIFENVAYGLRVN----------GVK-----DKAYLAERVERSLRHAALWDEVKDR---LH-- 144 (253)
T ss_pred HhhcEEEEecCCCCCcCcHHHHHHHHHHHc----------CCC-----CHHHHHHHHHHHHHHcCCchhhhHH---hh--
Confidence 466899999999999999999997642100 000 0001123456677777775432211 11
Q ss_pred cccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHH
Q 000647 1250 LNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQ 1329 (1374)
Q Consensus 1250 ~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~ 1329 (1374)
.....||||||||++| ||||+++|+++||||||++||.++.+.
T Consensus 145 -~~~~~LSgGq~qrv~l------------------------------------aral~~~p~llllDEPt~~LD~~~~~~ 187 (253)
T PRK14242 145 -ESALGLSGGQQQRLCI------------------------------------ARALAVEPEVLLMDEPASALDPIATQK 187 (253)
T ss_pred -CCcccCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 1245799999999999 999999999999999999999999988
Q ss_pred HHHHHHh--cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1330 LYRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1330 l~~~~~~--~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
+.+++++ .++|+|+|+|+++.+ ++.|+++.|.+|+
T Consensus 188 l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~ 225 (253)
T PRK14242 188 IEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGK 225 (253)
T ss_pred HHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCE
Confidence 8776653 478999999999776 6789999996543
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=348.23 Aligned_cols=199 Identities=28% Similarity=0.349 Sum_probs=166.4
Q ss_pred CcEEEeeeEEEcCC----------CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc---
Q 000647 443 NYIEFSGVKVVTPT----------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~----------~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~--- 509 (1374)
..++++|+++.|+. ...+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 47999999999862 24699999999999999999999999999999999999999999999998531
Q ss_pred ------cccccEEEEecCCC--CC-cCCHHHHhcCCCCCCccc-CCCCHHHHHHHHHHcCCh-hHHhcCCCCccccCCCC
Q 000647 510 ------DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDE 578 (1374)
Q Consensus 510 ------~~~~~i~~v~Q~p~--l~-~~Tv~eni~~~~~~~~~~-~~~~~~~~~~~l~~~~L~-~~~~~~~~~~~~~~g~~ 578 (1374)
.++++|+||||+|+ ++ ..|+.+|+.++....... .....+++.++++.++|. +..++.| .+
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~--------~~ 463 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP--------HE 463 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc--------cc
Confidence 13567999999984 44 469999998653211100 011235677899999995 5677776 68
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 579 LSgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
||||||||++|||||+.+|+++||||||++||+.+...+++.+++ .|.|+|+||||++.+. .||+|++|++
T Consensus 464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~ 539 (623)
T PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYL 539 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999988743 4899999999999875 6999999975
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=317.62 Aligned_cols=201 Identities=22% Similarity=0.201 Sum_probs=159.9
Q ss_pred EEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc--C----CcccE
Q 000647 1101 SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--G----SGCGI 1174 (1374)
Q Consensus 1101 ~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~--~----~r~~i 1174 (1374)
.++||+..|. .+.+|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++...+ . .+.++
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 4567777664 356899999999999999999999999999999999999999999999999887652 1 23579
Q ss_pred EEecCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccc
Q 000647 1175 FYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1374)
Q Consensus 1175 ~~VpQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g 1253 (1374)
+||||+|.+|. .|++||+.++.... +. .....++++.++++.++|.+.+.+. .
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~ 158 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQ----------GV------PRAEREERAAEALELVGLEGWEHKY----------P 158 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhc----------CC------CHHHHHHHHHHHHHHcCCHhHhhCC----------c
Confidence 99999999985 69999997642100 00 0000123456778888886555443 2
Q ss_pred cCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHH
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL 1333 (1374)
Q Consensus 1254 ~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~ 1333 (1374)
..||+|||||++| ||||+++|++|||||||++||..+.+.+.+.
T Consensus 159 ~~LS~Gq~qrv~l------------------------------------Aral~~~p~illLDEPt~~LD~~~~~~l~~~ 202 (269)
T cd03294 159 DELSGGMQQRVGL------------------------------------ARALAVDPDILLMDEAFSALDPLIRREMQDE 202 (269)
T ss_pred ccCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 4699999999999 9999999999999999999999999888776
Q ss_pred HHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1334 AKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1334 ~~~----~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
+++ .|+|+|+++|+++.+ ++.|+++.|.+|+
T Consensus 203 l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~ 238 (269)
T cd03294 203 LLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGR 238 (269)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 542 389999999999765 6789999996543
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=320.03 Aligned_cols=203 Identities=22% Similarity=0.285 Sum_probs=163.9
Q ss_pred CCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc-cCCcccEEE
Q 000647 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFY 1176 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~-~~~r~~i~~ 1176 (1374)
..|+++||++.|++ +.+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.|+... ...|.+|+|
T Consensus 6 ~~i~i~~l~k~~~~-~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 6 APIDFRNVEKRYGD-KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred ceEEEEeEEEEECC-eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 46999999999964 6799999999999999999999999999999999999999999999999998765 345678999
Q ss_pred ecCCCCCCC-cchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccC
Q 000647 1177 VPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1374)
Q Consensus 1177 VpQ~P~Lf~-GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~ 1255 (1374)
|||+|.+|. .|++||+.|... .++.. .......+.++++.++|.+.. ++.+ ..
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~----------~~~~~------~~~~~~~~~~~l~~~~l~~~~-------~~~~---~~ 138 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGR----------YFGLS------AAAARALVPPLLEFAKLENKA-------DAKV---GE 138 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHH----------HcCCC------HHHHHHHHHHHHHHcCCchHh-------cCch---hh
Confidence 999999986 699999974211 00000 000112345677777764332 3222 46
Q ss_pred CChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH
Q 000647 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1335 (1374)
Q Consensus 1256 LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~ 1335 (1374)
||+|||||++| ||||+++|++|+|||||++||+...+.+.++++
T Consensus 139 LS~G~~qrl~l------------------------------------a~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~ 182 (306)
T PRK13537 139 LSGGMKRRLTL------------------------------------ARALVNDPDVLVLDEPTTGLDPQARHLMWERLR 182 (306)
T ss_pred CCHHHHHHHHH------------------------------------HHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999988877665
Q ss_pred h---cCceEEEecCCCCch-hhccceEEEEcC
Q 000647 1336 D---MGITFVTSSQRPALI-PFHSLELRLIDG 1363 (1374)
Q Consensus 1336 ~---~~~TvI~IaHRl~~i-~~~~~~l~l~~g 1363 (1374)
+ .|+|+|.++|.++.+ ..+|+++.|.+|
T Consensus 183 ~l~~~g~till~sH~l~e~~~~~d~i~il~~G 214 (306)
T PRK13537 183 SLLARGKTILLTTHFMEEAERLCDRLCVIEEG 214 (306)
T ss_pred HHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 3 489999999999766 678999888654
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=280.36 Aligned_cols=191 Identities=20% Similarity=0.306 Sum_probs=158.6
Q ss_pred CcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEecCCCCCCCcch
Q 000647 1111 SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTL 1188 (1374)
Q Consensus 1111 ~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~VpQ~P~Lf~GTl 1188 (1374)
++.++|+++||++.+||+++|+|||||||||+++.+.-|.+|++|.++..|.|++.. ..+|++++|+-|.|-||.+||
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 467899999999999999999999999999999999999999999999999999988 588999999999999999999
Q ss_pred HHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCChhhhhhhcccc
Q 000647 1189 RDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVS 1268 (1374)
Q Consensus 1189 R~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSgGQrQrlai~~ 1268 (1374)
.||+.+|-... .-........+.|+.+++.+-+ ++.+ -..||||||||+|+
T Consensus 94 eDNlifP~~~r------------------~rr~dr~aa~~llar~~l~~~~------L~k~---it~lSGGE~QriAl-- 144 (223)
T COG4619 94 EDNLIFPWQIR------------------NRRPDRAAALDLLARFALPDSI------LTKN---ITELSGGEKQRIAL-- 144 (223)
T ss_pred hhccccchHHh------------------ccCCChHHHHHHHHHcCCchhh------hcch---hhhccchHHHHHHH--
Confidence 99999985311 0012223344556666654322 1222 35699999999999
Q ss_pred chhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHH----HhcCceEEEe
Q 000647 1269 HLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA----KDMGITFVTS 1344 (1374)
Q Consensus 1269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~----~~~~~TvI~I 1344 (1374)
+|-|---||||+|||+|||||+.+.+.+.+++ ++.++.++=|
T Consensus 145 ----------------------------------iR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~Wi 190 (223)
T COG4619 145 ----------------------------------IRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWI 190 (223)
T ss_pred ----------------------------------HHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEE
Confidence 99999999999999999999999877665544 4579999999
Q ss_pred cCCCCc-hhhccceEEEEcCC
Q 000647 1345 SQRPAL-IPFHSLELRLIDGE 1364 (1374)
Q Consensus 1345 aHRl~~-i~~~~~~l~l~~g~ 1364 (1374)
+|..+- ++..++.+.+.+|.
T Consensus 191 THd~dqa~rha~k~itl~~G~ 211 (223)
T COG4619 191 THDKDQAIRHADKVITLQPGH 211 (223)
T ss_pred ecChHHHhhhhheEEEeccCc
Confidence 999955 88889999997754
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=308.09 Aligned_cols=182 Identities=31% Similarity=0.390 Sum_probs=149.3
Q ss_pred eeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcC----CccEEEeCCCCc---cc-cccEEEEecCCC--CCc-CC
Q 000647 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL----VSGHIAKPGVGS---DL-NKEIFYVPQRPY--TAV-GT 528 (1374)
Q Consensus 460 ~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~----~~G~I~~~g~~~---~~-~~~i~~v~Q~p~--l~~-~T 528 (1374)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. +. ++.++|+||+|. ++. .|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 47899999999999999999999999999999999999 899999998651 12 357999999984 333 59
Q ss_pred HHHHhcCCCCCCcccCCCCHHHHHHHHHHcCCh---hHHhcCCCCccccCCCCCChhHHHHHHHHHHHccCCCEEEEecC
Q 000647 529 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE---YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605 (1374)
Q Consensus 529 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~---~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~illLDEp 605 (1374)
+.+|+.++............+++.++++.+++. +..++.+ ..||||||||++||||++++|+++|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYP--------FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCCh--------hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999886542111000111234678899999997 4455544 68999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 606 TSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 606 tsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 201 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDD 201 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999998887754 3789999999999885 7999999975
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=307.61 Aligned_cols=199 Identities=21% Similarity=0.258 Sum_probs=162.7
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecC
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ 1179 (1374)
|+++||++.|+. .+ .|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++......+.+++|+||
T Consensus 2 l~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 2 LKLTDITWLYHH-LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred eEEEEEEEEECC-cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 789999999874 22 399999999999999999999999999999999999999999999988765434567999999
Q ss_pred CCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCCh
Q 000647 1180 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1374)
Q Consensus 1180 ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSg 1258 (1374)
+|.+|.+ |++||+.++....- ......++++.++++.+++...+.+. ...|||
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~----------------~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 132 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGL----------------KLNAAQREKLHAIARQMGIEDLLARL----------PGQLSG 132 (232)
T ss_pred ccccccCCcHHHHHhccccccc----------------CCCHHHHHHHHHHHHHcCcHHHHhCC----------cccCCH
Confidence 9999986 99999987632100 00001234567788888886655443 246999
Q ss_pred hhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--
Q 000647 1259 GEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD-- 1336 (1374)
Q Consensus 1259 GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~-- 1336 (1374)
|||||++| |||++++|+++||||||++||.++.+.+.+++++
T Consensus 133 G~~qrv~l------------------------------------aral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~ 176 (232)
T PRK10771 133 GQRQRVAL------------------------------------ARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC 176 (232)
T ss_pred HHHHHHHH------------------------------------HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999877665542
Q ss_pred --cCceEEEecCCCCch-hhccceEEEEcC
Q 000647 1337 --MGITFVTSSQRPALI-PFHSLELRLIDG 1363 (1374)
Q Consensus 1337 --~~~TvI~IaHRl~~i-~~~~~~l~l~~g 1363 (1374)
.|+|+|+++|++..+ .+.++++.+.+|
T Consensus 177 ~~~~~tiii~sH~~~~~~~~~d~i~~l~~g 206 (232)
T PRK10771 177 QERQLTLLMVSHSLEDAARIAPRSLVVADG 206 (232)
T ss_pred HhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 489999999999875 568899999654
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=315.98 Aligned_cols=211 Identities=19% Similarity=0.199 Sum_probs=165.8
Q ss_pred CCCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCC-----CCCeEecCCCccccc----
Q 000647 1097 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV-----VSGSLTKPSQHIDEE---- 1167 (1374)
Q Consensus 1097 ~g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~-----~~G~I~idg~dI~~~---- 1167 (1374)
.+.|+++||++.|++ +++|+|+||+|+|||.++|+||||||||||+++|.|+++| .+|+|+++|.++...
T Consensus 17 ~~~l~~~nl~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYGE-KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEECC-EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 568999999999975 5799999999999999999999999999999999999975 899999999988642
Q ss_pred cCCcccEEEecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCc
Q 000647 1168 AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWD 1247 (1374)
Q Consensus 1168 ~~~r~~i~~VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gld 1247 (1374)
...|.+++||||+|.+|.+|++||+.++.... +.. ......++++.++++.+++...+... ++
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~----------~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~---~~ 158 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIH----------GLA----RSKAELDEIVETSLRKAGLWEEVKDR---LH 158 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhc----------ccc----cchHHHHHHHHHHHHHcCCchhhhHH---hh
Confidence 23466899999999999999999997642100 000 00000123456778877775432211 11
Q ss_pred cccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHH
Q 000647 1248 ANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVE 1327 (1374)
Q Consensus 1248 t~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e 1327 (1374)
. ....||||||||++| ||||+++|+++||||||++||..+.
T Consensus 159 ~---~~~~LSgGq~qrv~l------------------------------------aral~~~p~lllLDEPt~~LD~~~~ 199 (267)
T PRK14235 159 E---PGTGLSGGQQQRLCI------------------------------------ARAIAVSPEVILMDEPCSALDPIAT 199 (267)
T ss_pred C---CcccCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCCcCCCHHHH
Confidence 1 245799999999999 9999999999999999999999999
Q ss_pred HHHHHHHHh--cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1328 EQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1328 ~~l~~~~~~--~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
+.+.+++++ .+.|+|+|+|+++.+ .+.++++.|.+|+
T Consensus 200 ~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~ 239 (267)
T PRK14235 200 AKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGN 239 (267)
T ss_pred HHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCE
Confidence 888776653 368999999999877 6678888886543
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=313.96 Aligned_cols=217 Identities=21% Similarity=0.244 Sum_probs=164.6
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc---CCcccEE
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIF 1175 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~---~~r~~i~ 1175 (1374)
.|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..+.+++
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 5 LLSVSGLMMRFGG-LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred eEEEeeEEEEECC-EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 5899999999864 57999999999999999999999999999999999999999999999999887652 2345699
Q ss_pred EecCCCCCCCc-chHHHhccCCCh-hHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccc
Q 000647 1176 YVPQRPYTCLG-TLRDQIIYPLSR-EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1374)
Q Consensus 1176 ~VpQ~P~Lf~G-TlR~Nl~yp~~~-~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g 1253 (1374)
|+||+|.+|.+ |+++|+.++... ...... ........ .........+.+.++++.+++.+.... ..
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~~ 151 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLF-SGLLKTPA-FRRAESEALDRAATWLERVGLLEHANR----------QA 151 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccccchhh-hhhccccc-cccchhHHHHHHHHHHHhCChhhhhhC----------Ch
Confidence 99999999986 999999875310 000000 00000000 000000011335566777766543322 24
Q ss_pred cCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHH
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL 1333 (1374)
Q Consensus 1254 ~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~ 1333 (1374)
..||+|||||++| |||++++|+++||||||++||.++.+.+.++
T Consensus 152 ~~LS~G~~qrv~l------------------------------------a~al~~~p~llllDEPt~~LD~~~~~~l~~~ 195 (255)
T PRK11300 152 GNLAYGQQRRLEI------------------------------------ARCMVTQPEILMLDEPAAGLNPKETKELDEL 195 (255)
T ss_pred hhCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCccCCCHHHHHHHHHH
Confidence 5799999999999 9999999999999999999999999887775
Q ss_pred HHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1334 AKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1334 ~~~----~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
+++ .|+|+|+|+|+++.+ ++.++++.|.+|+
T Consensus 196 L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 196 IAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231 (255)
T ss_pred HHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 532 389999999999776 6689999997654
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=315.42 Aligned_cols=204 Identities=19% Similarity=0.236 Sum_probs=162.4
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc-----CCccc
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCG 1173 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~-----~~r~~ 1173 (1374)
.|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++...+ ..+++
T Consensus 7 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 7 LVDMRGVSFTRGN-RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred eEEEeCeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 4899999998864 57999999999999999999999999999999999999999999999999886542 23567
Q ss_pred EEEecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccccc
Q 000647 1174 IFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 1252 (1374)
Q Consensus 1174 i~~VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~ 1252 (1374)
++||||+|.+|.+ |++||+.++..... .. .....++.+.+.++.+++.+...+.
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~---------~~------~~~~~~~~~~~~l~~~gl~~~~~~~---------- 140 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHT---------QL------PAPLLHSTVMMKLEAVGLRGAAKLM---------- 140 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHcc---------CC------CHHHHHHHHHHHHHHcCChhhhhCC----------
Confidence 9999999999987 99999975421000 00 0000122355667777775433322
Q ss_pred ccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHH
Q 000647 1253 EDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYR 1332 (1374)
Q Consensus 1253 g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~ 1332 (1374)
...||||||||++| ||||+++|+++||||||++||.++.+.+.+
T Consensus 141 ~~~LSgGq~qrv~l------------------------------------aral~~~p~lllLDEPt~~LD~~~~~~l~~ 184 (269)
T PRK11831 141 PSELSGGMARRAAL------------------------------------ARAIALEPDLIMFDEPFVGQDPITMGVLVK 184 (269)
T ss_pred hhhCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 35799999999999 999999999999999999999999987776
Q ss_pred HHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1333 LAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1333 ~~~~----~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
++++ .|+|+|+|+|++..+ ++.++++.|.+|+
T Consensus 185 ~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~ 221 (269)
T PRK11831 185 LISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKK 221 (269)
T ss_pred HHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCE
Confidence 5543 389999999998655 5688888886553
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=307.37 Aligned_cols=197 Identities=27% Similarity=0.357 Sum_probs=152.8
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCC--cCCccEEEeCCCCc------c-ccccE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVGS------D-LNKEI 515 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~--~~~~G~I~~~g~~~------~-~~~~i 515 (1374)
++++|+++.|+ ++++++|+||+|++|++++|+||||||||||+++|+|+. +|++|+|.++|.+. . .+..+
T Consensus 2 i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 2 LSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred eEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 78999999996 467999999999999999999999999999999999994 69999999998641 1 12469
Q ss_pred EEEecCCCCCcC-CHHHHhcCCCCC---CcccCCCC----HHHHHHHHHHcCCh-hHHhcCCCCccccCCCCCChhHHHH
Q 000647 516 FYVPQRPYTAVG-TLRDQLIYPLTS---DQEVEPLT----HGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1374)
Q Consensus 516 ~~v~Q~p~l~~~-Tv~eni~~~~~~---~~~~~~~~----~~~~~~~l~~~~L~-~~~~~~~~~~~~~~g~~LSgGqkQR 586 (1374)
+|++|+|.++.. |..+++.+.... ........ .+.+.+.++.+++. ++.++.+ ...||||||||
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-------~~~LS~G~~qr 153 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV-------NVGFSGGEKKR 153 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC-------CCCCCHHHHHH
Confidence 999999976553 444443221100 00000011 23455677777774 3333322 13799999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHhh--ccEEEEecC
Q 000647 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF--HDVVLSLDG 649 (1374)
Q Consensus 587 lalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~~--~d~il~l~~ 649 (1374)
++||||++++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+.. +|+++++++
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~ 221 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQ 221 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEEC
Confidence 9999999999999999999999999999999886653 47899999999999875 799999975
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=313.25 Aligned_cols=206 Identities=24% Similarity=0.299 Sum_probs=164.8
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEe
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYV 1177 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~V 1177 (1374)
|+++||++.|++ +.+|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ...++.++|+
T Consensus 3 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 3 LRTENLTVGYGT-KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEeEEEEECC-EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 789999999875 5799999999999999999999999999999999999999999999999988754 2345679999
Q ss_pred cCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCC
Q 000647 1178 PQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 1256 (1374)
Q Consensus 1178 pQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~L 1256 (1374)
||+|.++.+ |++||+.++...... ..+. .....++.+.++++.+++.+..+.. ...|
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~------~~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~L 139 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLS------LWGR------LSAEDNARVNQAMEQTRINHLADRR----------LTDL 139 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhh------hccC------CCHHHHHHHHHHHHHcCCHHHHcCC----------cccC
Confidence 999999877 999999865321000 0000 0001123456677777775443322 3579
Q ss_pred ChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh
Q 000647 1257 SLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD 1336 (1374)
Q Consensus 1257 SgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~ 1336 (1374)
|||||||++| |||++++|+++||||||++||.++.+.+.+.+++
T Consensus 140 S~G~~qrv~l------------------------------------aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 183 (255)
T PRK11231 140 SGGQRQRAFL------------------------------------AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE 183 (255)
T ss_pred CHHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999887776543
Q ss_pred ---cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1337 ---MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1337 ---~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
.|+|+|+++|+++.+ ++.|+++.+.+|.
T Consensus 184 l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 215 (255)
T PRK11231 184 LNTQGKTVVTVLHDLNQASRYCDHLVVLANGH 215 (255)
T ss_pred HHHCCCEEEEEECCHHHHHHhcCEEEEEECCe
Confidence 489999999999865 5789999996554
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=310.86 Aligned_cols=200 Identities=20% Similarity=0.249 Sum_probs=159.6
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc---CCcccEE
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIF 1175 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~---~~r~~i~ 1175 (1374)
.|+++||++.|++ +++|+|+||+|+|||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... ..+++++
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYGK-IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeCC-ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 4899999998864 57999999999999999999999999999999999999999999999999887652 2456799
Q ss_pred EecCCCCCCCc-chHHHhccCCC-hhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhC-CCchhhhhhccCCcccccc
Q 000647 1176 YVPQRPYTCLG-TLRDQIIYPLS-REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGV-RLSYLLEREEVGWDANLNW 1252 (1374)
Q Consensus 1176 ~VpQ~P~Lf~G-TlR~Nl~yp~~-~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v-~L~~~v~~~~~Gldt~~~~ 1252 (1374)
|+||+|.+|.+ |+++|+.++.. ..... .++.+.++++.+ ++.+.. + ..
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~-------------------~~~~~~~~l~~~~~l~~~~-------~---~~ 134 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAERDQ-------------------FQERIKWVYELFPRLHERR-------I---QR 134 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccChhH-------------------HHHHHHHHHHHHHHHHHHH-------h---Cc
Confidence 99999999985 99999986431 00000 011233344433 122111 1 12
Q ss_pred ccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHH
Q 000647 1253 EDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYR 1332 (1374)
Q Consensus 1253 g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~ 1332 (1374)
...||+|||||++| |||++++|+|+||||||++||.++.+.+.+
T Consensus 135 ~~~LS~G~~qrl~l------------------------------------a~al~~~p~illlDEPt~~LD~~~~~~l~~ 178 (237)
T PRK11614 135 AGTMSGGEQQMLAI------------------------------------GRALMSQPRLLLLDEPSLGLAPIIIQQIFD 178 (237)
T ss_pred hhhCCHHHHHHHHH------------------------------------HHHHHhCCCEEEEcCccccCCHHHHHHHHH
Confidence 46799999999999 999999999999999999999999988777
Q ss_pred HHH---hcCceEEEecCCCC-chhhccceEEEEcCC
Q 000647 1333 LAK---DMGITFVTSSQRPA-LIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1333 ~~~---~~~~TvI~IaHRl~-~i~~~~~~l~l~~g~ 1364 (1374)
.++ ..|+|+|.++|+++ ..++.|+++.|.+|+
T Consensus 179 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 214 (237)
T PRK11614 179 TIEQLREQGMTIFLVEQNANQALKLADRGYVLENGH 214 (237)
T ss_pred HHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCE
Confidence 654 25899999999996 567889999996543
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=311.87 Aligned_cols=209 Identities=23% Similarity=0.231 Sum_probs=164.6
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCC-----CCCeEecCCCccccc--cCCc
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV-----VSGSLTKPSQHIDEE--AGSG 1171 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~-----~~G~I~idg~dI~~~--~~~r 1171 (1374)
.|+++||++.|++ +++++|+||+|++||.++|+||||||||||+++|.|+++| .+|+|.++|.++... ...|
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 4899999998875 5699999999999999999999999999999999999974 699999999988764 2456
Q ss_pred ccEEEecCCCCCC-CcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcccc
Q 000647 1172 CGIFYVPQRPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1374)
Q Consensus 1172 ~~i~~VpQ~P~Lf-~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~ 1250 (1374)
++|+||||+|.+| ..|++||+.++..... ... .....++.+.++++.++|.+.++. .++..
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~----------~~~----~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~- 143 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNR----------LVK----SKKELQERVRWALEKAQLWDEVKD---RLDAP- 143 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhcc----------ccC----CHHHHHHHHHHHHHHcCCCcchhh---hhcCC-
Confidence 7899999999755 6799999976431000 000 000012346677888887543221 12222
Q ss_pred ccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHH
Q 000647 1251 NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL 1330 (1374)
Q Consensus 1251 ~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l 1330 (1374)
...||||||||+++ ||||+++|+++||||||++||.++.+.+
T Consensus 144 --~~~LSgG~~qrv~l------------------------------------aral~~~p~lllLDEP~~~LD~~~~~~l 185 (250)
T PRK14247 144 --AGKLSGGQQQRLCI------------------------------------ARALAFQPEVLLADEPTANLDPENTAKI 185 (250)
T ss_pred --cccCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 35799999999999 9999999999999999999999999888
Q ss_pred HHHHHh--cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1331 YRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1331 ~~~~~~--~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
.+.+++ .++|+|+|+|+++.+ .+.++++.|.+|+
T Consensus 186 ~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 222 (250)
T PRK14247 186 ESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQ 222 (250)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCe
Confidence 776653 479999999999876 5789999996554
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=326.86 Aligned_cols=190 Identities=22% Similarity=0.185 Sum_probs=156.4
Q ss_pred cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc--CC----cccEEEecCCCCCCC
Q 000647 1112 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GS----GCGIFYVPQRPYTCL 1185 (1374)
Q Consensus 1112 ~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~--~~----r~~i~~VpQ~P~Lf~ 1185 (1374)
++.+++|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+ .+ |++++||||+|.+|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 456899999999999999999999999999999999999999999999999998762 23 668999999999997
Q ss_pred c-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCChhhhhhh
Q 000647 1186 G-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1264 (1374)
Q Consensus 1186 G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSgGQrQrl 1264 (1374)
. |+++||.++... .+. .....++.+.++++.++|..+..+. ..+||||||||+
T Consensus 85 ~~TV~eNi~~~~~~----------~~~------~~~~~~~~~~~~l~~vgL~~~~~~~----------p~~LSGGq~QRV 138 (363)
T TIGR01186 85 HMTILQNTSLGPEL----------LGW------PEQERKEKALELLKLVGLEEYEHRY----------PDELSGGMQQRV 138 (363)
T ss_pred CCCHHHHHHHHHHH----------cCC------CHHHHHHHHHHHHHhcCCchhhhCC----------hhhCCHHHHHHH
Confidence 5 999999865310 000 0000123456778888886655443 357999999999
Q ss_pred ccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH----hcCce
Q 000647 1265 GMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGIT 1340 (1374)
Q Consensus 1265 ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~----~~~~T 1340 (1374)
|| ||||+++|+|+|||||||+||+.+.+.+++.+. +.++|
T Consensus 139 ~l------------------------------------ARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~T 182 (363)
T TIGR01186 139 GL------------------------------------ARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKT 182 (363)
T ss_pred HH------------------------------------HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 99 999999999999999999999999988877553 24899
Q ss_pred EEEecCCCC-chhhccceEEEEcC
Q 000647 1341 FVTSSQRPA-LIPFHSLELRLIDG 1363 (1374)
Q Consensus 1341 vI~IaHRl~-~i~~~~~~l~l~~g 1363 (1374)
+|.|+|+++ ..++.|+++.+.+|
T Consensus 183 ii~vTHd~~ea~~~~drI~vl~~G 206 (363)
T TIGR01186 183 IVFITHDLDEAIRIGDRIVIMKAG 206 (363)
T ss_pred EEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999996 46889999999654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=294.28 Aligned_cols=166 Identities=26% Similarity=0.386 Sum_probs=146.1
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc-cCCcccEEEec
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVP 1178 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~-~~~r~~i~~Vp 1178 (1374)
++++||++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ...+++++|+|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 478999998875 4699999999999999999999999999999999999999999999999988654 34466899999
Q ss_pred CCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCC
Q 000647 1179 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1374)
Q Consensus 1179 Q~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LS 1257 (1374)
|+|.+|.+ |++||+. ||
T Consensus 80 q~~~~~~~~tv~~~~~--------------------------------------------------------------LS 97 (173)
T cd03230 80 EEPSLYENLTVRENLK--------------------------------------------------------------LS 97 (173)
T ss_pred cCCccccCCcHHHHhh--------------------------------------------------------------cC
Confidence 99998876 7777751 69
Q ss_pred hhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh-
Q 000647 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD- 1336 (1374)
Q Consensus 1258 gGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~- 1336 (1374)
+|||||++| ||||+++|+++||||||++||.++.+.+.+.+++
T Consensus 98 ~G~~qrv~l------------------------------------aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~ 141 (173)
T cd03230 98 GGMKQRLAL------------------------------------AQALLHDPELLILDEPTSGLDPESRREFWELLREL 141 (173)
T ss_pred HHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999887776543
Q ss_pred --cCceEEEecCCCCchh-hccceEEEEcCC
Q 000647 1337 --MGITFVTSSQRPALIP-FHSLELRLIDGE 1364 (1374)
Q Consensus 1337 --~~~TvI~IaHRl~~i~-~~~~~l~l~~g~ 1364 (1374)
.|.|+|+++|+++.+. +.|+.+.+.+|+
T Consensus 142 ~~~g~tiii~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 142 KKEGKTILLSSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred HHCCCEEEEECCCHHHHHHhCCEEEEEeCCC
Confidence 4799999999997766 789999996653
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=317.24 Aligned_cols=201 Identities=24% Similarity=0.273 Sum_probs=162.4
Q ss_pred CEEEeeeEEeCCC----cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc------c
Q 000647 1099 SISFSKLDIITPS----QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE------A 1168 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~----~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~------~ 1168 (1374)
.|+++||++.|++ .+++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.+||.++... .
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3789999999864 25799999999999999999999999999999999999999999999999988542 1
Q ss_pred CCcccEEEecCCC--CCCCcchHHHhccCCC---hhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCc-hhhhhh
Q 000647 1169 GSGCGIFYVPQRP--YTCLGTLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLERE 1242 (1374)
Q Consensus 1169 ~~r~~i~~VpQ~P--~Lf~GTlR~Nl~yp~~---~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~-~~v~~~ 1242 (1374)
..+.+++++||+| .+|..|++|||.++.. ...+ ..++.+.++++.++|. .+.++
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~-------------------~~~~~~~~~l~~~gL~~~~~~~- 141 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSED-------------------EAKEKALKWLKKVGLSEDLISK- 141 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHH-------------------HHHHHHHHHHHHcCCChhHhhC-
Confidence 2356799999999 5788899999975421 0000 0122355677777774 33222
Q ss_pred ccCCccccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCC
Q 000647 1243 EVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNAT 1322 (1374)
Q Consensus 1243 ~~Gldt~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaL 1322 (1374)
....||||||||++| ||||+++|++|||||||++|
T Consensus 142 ---------~~~~LSgGq~qrl~l------------------------------------aral~~~p~lLlLDEPt~gL 176 (287)
T PRK13641 142 ---------SPFELSGGQMRRVAI------------------------------------AGVMAYEPEILCLDEPAAGL 176 (287)
T ss_pred ---------CcccCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEECCCCCC
Confidence 135799999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1323 SVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1323 D~~~e~~l~~~~~~---~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
|..+.+.+.+.+++ .|.|+|.++|++..+ .+.|+++.|.+|+
T Consensus 177 D~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~ 222 (287)
T PRK13641 177 DPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGK 222 (287)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99998877776543 489999999999765 6889999996654
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=311.54 Aligned_cols=203 Identities=19% Similarity=0.309 Sum_probs=161.6
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc---CCcccEEE
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIFY 1176 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~---~~r~~i~~ 1176 (1374)
|+++||++.|++ +.+|+|+||+|+|||.++|+||||||||||+++|.|+++|.+|+|.++|.++...+ ..|.+++|
T Consensus 4 l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 4 LTAKNLAKAYKG-RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred EEEeCcEEEeCC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 789999999875 57999999999999999999999999999999999999999999999999886652 24567999
Q ss_pred ecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccC
Q 000647 1177 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1374)
Q Consensus 1177 VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~ 1255 (1374)
+||+|.+|.+ |++||+.++...... . .....+..+.++++.+++.....+ ....
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~---------~------~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~ 137 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDD---------L------SAEQREDRANELMEEFHIEHLRDS----------MGQS 137 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccc---------c------CHHHHHHHHHHHHHHcCCHHHhhc----------chhh
Confidence 9999999875 999999764210000 0 000012335566777666433221 2357
Q ss_pred CChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHH
Q 000647 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1335 (1374)
Q Consensus 1256 LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~ 1335 (1374)
||+|||||++| |||++++|+++||||||++||.++.+.+.+.++
T Consensus 138 LS~G~~qrv~l------------------------------------aral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 181 (241)
T PRK10895 138 LSGGERRRVEI------------------------------------ARALAANPKFILLDEPFAGVDPISVIDIKRIIE 181 (241)
T ss_pred CCHHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999877765543
Q ss_pred ---hcCceEEEecCCCC-chhhccceEEEEcCC
Q 000647 1336 ---DMGITFVTSSQRPA-LIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1336 ---~~~~TvI~IaHRl~-~i~~~~~~l~l~~g~ 1364 (1374)
..|.|+|+++|++. ..++.|+++.|.+|+
T Consensus 182 ~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~ 214 (241)
T PRK10895 182 HLRDSGLGVLITDHNVRETLAVCERAYIVSQGH 214 (241)
T ss_pred HHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCe
Confidence 35899999999995 557789999996543
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=310.25 Aligned_cols=195 Identities=21% Similarity=0.300 Sum_probs=163.3
Q ss_pred CCCEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEE
Q 000647 1097 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176 (1374)
Q Consensus 1097 ~g~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~ 1176 (1374)
.+.|+++||+++ .+++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++| +|+|
T Consensus 37 ~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-----------~i~y 102 (282)
T cd03291 37 DNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-----------RISF 102 (282)
T ss_pred CCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----------EEEE
Confidence 467999999995 35799999999999999999999999999999999999999999999887 3899
Q ss_pred ecCCCCCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccc-cccC
Q 000647 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WEDI 1255 (1374)
Q Consensus 1177 VpQ~P~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~-~g~~ 1255 (1374)
+||+|++|++|++||+.++....+ ..+.+.++.+++.+.+...|.++++.++ .+..
T Consensus 103 v~q~~~l~~~tv~enl~~~~~~~~-----------------------~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~ 159 (282)
T cd03291 103 SSQFSWIMPGTIKENIIFGVSYDE-----------------------YRYKSVVKACQLEEDITKFPEKDNTVLGEGGIT 159 (282)
T ss_pred EeCcccccccCHHHHhhcccccCH-----------------------HHHHHHHHHhCCHHHHHhccccccceecCCCCc
Confidence 999999999999999976432111 1123445556666666677777776653 3578
Q ss_pred CChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHH-H
Q 000647 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL-A 1334 (1374)
Q Consensus 1256 LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~-~ 1334 (1374)
||+|||||++| ||||+++|+++||||||++||.++.+.+.+. +
T Consensus 160 LSgGq~qrv~l------------------------------------AraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll 203 (282)
T cd03291 160 LSGGQRARISL------------------------------------ARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV 203 (282)
T ss_pred CCHHHHHHHHH------------------------------------HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999998877653 2
Q ss_pred H--hcCceEEEecCCCCchhhccceEEEEcCC
Q 000647 1335 K--DMGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1335 ~--~~~~TvI~IaHRl~~i~~~~~~l~l~~g~ 1364 (1374)
+ ..+.|+|+|+|++..+...|+.+.|.+|+
T Consensus 204 ~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~ 235 (282)
T cd03291 204 CKLMANKTRILVTSKMEHLKKADKILILHEGS 235 (282)
T ss_pred HHhhCCCEEEEEeCChHHHHhCCEEEEEECCE
Confidence 2 24789999999998899999999996654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=315.61 Aligned_cols=203 Identities=23% Similarity=0.335 Sum_probs=163.7
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc----cCCcccEE
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE----AGSGCGIF 1175 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~----~~~r~~i~ 1175 (1374)
|+++||+++|+..+++++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ...+.+|+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 68999999998656799999999999999999999999999999999999999999999999988522 13456799
Q ss_pred EecCCC--CCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccc
Q 000647 1176 YVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1374)
Q Consensus 1176 ~VpQ~P--~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g 1253 (1374)
|+||+| .+|..|++||+.++... .+. ......+.+.++++.++|.++..+. .
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~----------~~~------~~~~~~~~~~~~l~~~~L~~~~~~~----------~ 135 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLN----------LGL------SKEEVEKRVKEALKAVGMEGFENKP----------P 135 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHH----------cCC------CHHHHHHHHHHHHHHCCCchhhcCC----------h
Confidence 999998 57889999999754210 000 0000123356677877775433221 3
Q ss_pred cCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHH
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL 1333 (1374)
Q Consensus 1254 ~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~ 1333 (1374)
..||||||||++| |||++++|+++||||||++||..+...+.+.
T Consensus 136 ~~LS~Gq~qrv~l------------------------------------aral~~~p~llllDEPt~gLD~~~~~~l~~~ 179 (275)
T PRK13639 136 HHLSGGQKKRVAI------------------------------------AGILAMKPEIIVLDEPTSGLDPMGASQIMKL 179 (275)
T ss_pred hhCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 5799999999999 9999999999999999999999999887765
Q ss_pred HHh---cCceEEEecCCCCchh-hccceEEEEcCC
Q 000647 1334 AKD---MGITFVTSSQRPALIP-FHSLELRLIDGE 1364 (1374)
Q Consensus 1334 ~~~---~~~TvI~IaHRl~~i~-~~~~~l~l~~g~ 1364 (1374)
+++ .|+|+|.|+|++..+. +.|+++.+.+|+
T Consensus 180 l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~ 214 (275)
T PRK13639 180 LYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGK 214 (275)
T ss_pred HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 543 4899999999998764 789999997654
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=308.58 Aligned_cols=203 Identities=19% Similarity=0.261 Sum_probs=160.0
Q ss_pred EEEeeeEEeCCCc---ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCC---CCCCeEecCCCccccccCCccc
Q 000647 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP---VVSGSLTKPSQHIDEEAGSGCG 1173 (1374)
Q Consensus 1100 I~f~~V~~~yp~~---~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~---~~~G~I~idg~dI~~~~~~r~~ 1173 (1374)
+.|+||++.||.. +++++|+||+|++||.++|+||||||||||+++|.|+++ |.+|+|.++|.++... ..|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~-~~~~~ 82 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD-QFQKC 82 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChH-Hhccc
Confidence 4699999999875 789999999999999999999999999999999999999 9999999999887642 34678
Q ss_pred EEEecCCCCCCCc-chHHHhccCCChh-HHHHHHHhhccCCCcccccCCCChHHHHH-HHHhCCCchhhhhhccCCcccc
Q 000647 1174 IFYVPQRPYTCLG-TLRDQIIYPLSRE-EAELRALKLHGKGEKLVDTTNILDSYLKT-ILEGVRLSYLLEREEVGWDANL 1250 (1374)
Q Consensus 1174 i~~VpQ~P~Lf~G-TlR~Nl~yp~~~~-e~~~~~~~~~~~~~~~~~~~~~~d~~l~~-~L~~v~L~~~v~~~~~Gldt~~ 1250 (1374)
++++||+|.+|.+ |++||+.++.... .... .....+....+ .++.+++.+..++
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~l~~~~~~--------- 139 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKS--------------SDAIRKKRVEDVLLRDLALTRIGGN--------- 139 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhccccc--------------chHHHHHHHHHHHHHhhcchhhhcc---------
Confidence 9999999999988 9999997642100 0000 00000111223 5555554332211
Q ss_pred ccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHH
Q 000647 1251 NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL 1330 (1374)
Q Consensus 1251 ~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l 1330 (1374)
....||+|||||++| |||++++|+++||||||++||..+...+
T Consensus 140 -~~~~LS~G~~qrl~l------------------------------------aral~~~p~illlDEP~~gLD~~~~~~~ 182 (226)
T cd03234 140 -LVKGISGGERRRVSI------------------------------------AVQLLWDPKVLILDEPTSGLDSFTALNL 182 (226)
T ss_pred -cccCcCHHHHHHHHH------------------------------------HHHHHhCCCEEEEeCCCcCCCHHHHHHH
Confidence 235799999999999 9999999999999999999999999887
Q ss_pred HHHHHh---cCceEEEecCCC--CchhhccceEEEEcC
Q 000647 1331 YRLAKD---MGITFVTSSQRP--ALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1331 ~~~~~~---~~~TvI~IaHRl--~~i~~~~~~l~l~~g 1363 (1374)
.+++++ .+.|+|+++|++ ...++.|+++.+.+|
T Consensus 183 ~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G 220 (226)
T cd03234 183 VSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSG 220 (226)
T ss_pred HHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCC
Confidence 776543 489999999997 467889999999654
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=316.98 Aligned_cols=206 Identities=22% Similarity=0.309 Sum_probs=168.1
Q ss_pred CCCEEEeeeEEeCCC-cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCC---CeEecCCCcccccc--CC
Q 000647 1097 QDSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVS---GSLTKPSQHIDEEA--GS 1170 (1374)
Q Consensus 1097 ~g~I~f~~V~~~yp~-~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~---G~I~idg~dI~~~~--~~ 1170 (1374)
++.|+++|+++.|++ .+++++|+||+|++||.++|+||||||||||+++|.|+++|.+ |+|.++|.++...+ ..
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 356999999999975 4579999999999999999999999999999999999999987 89999999887542 34
Q ss_pred cccEEEecCCC--CCCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcc
Q 000647 1171 GCGIFYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1374)
Q Consensus 1171 r~~i~~VpQ~P--~Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt 1248 (1374)
+.+++||||+| .++..|++|||.|+.... +. .....++.+.++++.++|.+...+.
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~----------~~------~~~~~~~~~~~~l~~~~L~~~~~~~------ 140 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENR----------AV------PRPEMIKIVRDVLADVGMLDYIDSE------ 140 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhC----------CC------CHHHHHHHHHHHHHHCCChhHhcCC------
Confidence 56899999999 467889999997652100 00 0000123456778888886655443
Q ss_pred ccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHH
Q 000647 1249 NLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEE 1328 (1374)
Q Consensus 1249 ~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~ 1328 (1374)
...||+|||||++| ||||+++|+++||||||++||..+.+
T Consensus 141 ----~~~LS~G~~qrv~l------------------------------------aral~~~P~llllDEPt~gLD~~~~~ 180 (282)
T PRK13640 141 ----PANLSGGQKQRVAI------------------------------------AGILAVEPKIIILDESTSMLDPAGKE 180 (282)
T ss_pred ----cccCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEECCcccCCHHHHH
Confidence 35799999999999 99999999999999999999999998
Q ss_pred HHHHHHHh----cCceEEEecCCCCchhhccceEEEEcCC
Q 000647 1329 QLYRLAKD----MGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1329 ~l~~~~~~----~~~TvI~IaHRl~~i~~~~~~l~l~~g~ 1364 (1374)
.+.+.+++ .|+|+|+++|+++.+.+.|+++.+.+|.
T Consensus 181 ~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~ 220 (282)
T PRK13640 181 QILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGK 220 (282)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 77765542 3899999999998889999999997664
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=314.43 Aligned_cols=202 Identities=20% Similarity=0.227 Sum_probs=161.2
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc----cCCcccEE
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE----AGSGCGIF 1175 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~----~~~r~~i~ 1175 (1374)
|+++||++.|++ +.+|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ...|++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQD-EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcCC-cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 689999999974 5699999999999999999999999999999999999999999999999988421 23456799
Q ss_pred EecCCCC--CCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccc
Q 000647 1176 YVPQRPY--TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1374)
Q Consensus 1176 ~VpQ~P~--Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g 1253 (1374)
||||+|. ++..|+.+|+.++.... +. ......+.+.++++.+++.++..+ ..
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~----------~~ 134 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNL----------GV------PEAEITRRVDEALTLVDAQHFRHQ----------PI 134 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHc----------CC------CHHHHHHHHHHHHHHcCCHhHhcC----------Cc
Confidence 9999996 57788999997542100 00 000011234567777777544322 13
Q ss_pred cCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHH
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL 1333 (1374)
Q Consensus 1254 ~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~ 1333 (1374)
..||||||||++| ||||+++|+++||||||++||.++.+.+.++
T Consensus 135 ~~LSgG~~qrl~l------------------------------------araL~~~p~lllLDEPt~~LD~~~~~~l~~~ 178 (271)
T PRK13638 135 QCLSHGQKKRVAI------------------------------------AGALVLQARYLLLDEPTAGLDPAGRTQMIAI 178 (271)
T ss_pred hhCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 5799999999999 9999999999999999999999999887776
Q ss_pred HHh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1334 AKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1334 ~~~---~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
+++ .|+|+|+|+|++..+ .+.|+++.|.+|+
T Consensus 179 l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~ 213 (271)
T PRK13638 179 IRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQ 213 (271)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 543 489999999999876 6789999996553
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=321.68 Aligned_cols=206 Identities=23% Similarity=0.296 Sum_probs=162.5
Q ss_pred CCEEEeeeEEeCCC------------cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccc
Q 000647 1098 DSISFSKLDIITPS------------QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHID 1165 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~------------~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~ 1165 (1374)
.-|+++|++++|+. ...+++|+||+|++||.+||+|+||||||||+++|.|+.+|.+|+|.++|.++.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 35899999998863 246999999999999999999999999999999999999999999999999987
Q ss_pred ccc-----CCcccEEEecCCC--CCC-CcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCch
Q 000647 1166 EEA-----GSGCGIFYVPQRP--YTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY 1237 (1374)
Q Consensus 1166 ~~~-----~~r~~i~~VpQ~P--~Lf-~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~ 1237 (1374)
+.+ ..|.+|+||||+| .|+ ..|+++||.++...... +. ..+..++.+.++++.++|.+
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~--------~~------~~~~~~~~~~~~l~~vgl~~ 152 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP--------KL------SRQEVKDRVKAMMLKVGLLP 152 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc--------CC------CHHHHHHHHHHHHHHcCCCh
Confidence 652 2456899999999 466 57999999754210000 00 00001233556788887732
Q ss_pred -hhhhhccCCccccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEee
Q 000647 1238 -LLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILD 1316 (1374)
Q Consensus 1238 -~v~~~~~Gldt~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLD 1316 (1374)
...+ ...+||||||||++| ||||+++|++||||
T Consensus 153 ~~~~~----------~p~~LSgG~~QRv~i------------------------------------ArAL~~~P~llilD 186 (331)
T PRK15079 153 NLINR----------YPHEFSGGQCQRIGI------------------------------------ARALILEPKLIICD 186 (331)
T ss_pred HHhcC----------CcccCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEe
Confidence 2222 246799999999999 99999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCchh-hccceEEEEcC
Q 000647 1317 ECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIP-FHSLELRLIDG 1363 (1374)
Q Consensus 1317 EaTSaLD~~~e~~l~~~~~~----~~~TvI~IaHRl~~i~-~~~~~l~l~~g 1363 (1374)
||||+||+.+...+.+++++ .|.|+|.|+|+++.+. +.|+++.|.+|
T Consensus 187 EPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G 238 (331)
T PRK15079 187 EPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLG 238 (331)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999877665532 4899999999998875 68999998654
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=308.07 Aligned_cols=189 Identities=24% Similarity=0.311 Sum_probs=156.4
Q ss_pred EEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeCCCCc------cccccEEEEe
Q 000647 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIFYVP 519 (1374)
Q Consensus 446 ~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~g~~~------~~~~~i~~v~ 519 (1374)
+++||++. .+|+|+||++++||+++|+||||||||||+++|+|+.++ +|+|.++|.+. .+++.++|+|
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEec
Confidence 45677764 279999999999999999999999999999999999965 99999998641 2345699999
Q ss_pred cCCCC-CcCCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHcc---
Q 000647 520 QRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH--- 595 (1374)
Q Consensus 520 Q~p~l-~~~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~--- 595 (1374)
|+|.+ +..|+++|+.++..... ......+++.++++.+++.+..++.+ ..||||||||++||||+++
T Consensus 76 q~~~~~~~~tv~~nl~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 76 QQQTPPFAMPVFQYLTLHQPDKT-RTEAVASALNEVAEALGLDDKLGRSV--------NQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred ccCccCCCccHHHHHHhcCccCC-CcHHHHHHHHHHHHHcCCHhHhcCCc--------ccCCHHHHHHHHHHHHHhcccc
Confidence 99864 45799999988642211 01112346788999999988777655 6899999999999999997
Q ss_pred ----CCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhH-hhccEEEEecC
Q 000647 596 ----KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 596 ----~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~-~~~d~il~l~~ 649 (1374)
+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..+|++++|++
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 208 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQ 208 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 6799999999999999999999888764 479999999999965 67999999975
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=300.31 Aligned_cols=190 Identities=21% Similarity=0.278 Sum_probs=156.1
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc-cCCcccEEEec
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVP 1178 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~-~~~r~~i~~Vp 1178 (1374)
|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.+||.++... ...+++++++|
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 2 LDVIELDFDYHD-QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEEEeCC-eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 689999998875 5699999999999999999999999999999999999999999999999988653 34467899999
Q ss_pred CCCCCC-CcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCC
Q 000647 1179 QRPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1374)
Q Consensus 1179 Q~P~Lf-~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LS 1257 (1374)
|+|.++ ..|+++|+.++.... ..+..+.++++.+++.+..++ . ...||
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~---------------------~~~~~~~~~l~~~~l~~~~~~-------~---~~~LS 129 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFS---------------------PGAVGITELCRLFSLEHLIDY-------P---CGLLS 129 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcC---------------------cchHHHHHHHHHcCCchhhhC-------C---hhhcC
Confidence 999986 579999997642100 011245667777776443322 1 24699
Q ss_pred hhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh-
Q 000647 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD- 1336 (1374)
Q Consensus 1258 gGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~- 1336 (1374)
+|||||++| |||++++|+++||||||++||..+.+.+.+.+++
T Consensus 130 ~G~~~rv~l------------------------------------aral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~ 173 (200)
T PRK13540 130 SGQKRQVAL------------------------------------LRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEH 173 (200)
T ss_pred HHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999888776553
Q ss_pred --cCceEEEecCCCCchhhccce
Q 000647 1337 --MGITFVTSSQRPALIPFHSLE 1357 (1374)
Q Consensus 1337 --~~~TvI~IaHRl~~i~~~~~~ 1357 (1374)
.|+|+|+++|+...++-.|.+
T Consensus 174 ~~~~~tiii~sh~~~~~~~~d~~ 196 (200)
T PRK13540 174 RAKGGAVLLTSHQDLPLNKADYE 196 (200)
T ss_pred HHcCCEEEEEeCCchhccccchh
Confidence 589999999999877665544
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=315.57 Aligned_cols=203 Identities=20% Similarity=0.251 Sum_probs=160.6
Q ss_pred EEEeeeEEeCCC--------cccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCcccccc---
Q 000647 1100 ISFSKLDIITPS--------QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--- 1168 (1374)
Q Consensus 1100 I~f~~V~~~yp~--------~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~--- 1168 (1374)
|+++||++.|+. .+.+++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++...+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 789999998863 467999999999999999999999999999999999999999999999999887652
Q ss_pred --CCcccEEEecCCCC--CC-CcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCc-hhhhhh
Q 000647 1169 --GSGCGIFYVPQRPY--TC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLERE 1242 (1374)
Q Consensus 1169 --~~r~~i~~VpQ~P~--Lf-~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~-~~v~~~ 1242 (1374)
..|..|+||||+|. ++ ..|++|||.++.... ... .....++.+.++++.+++. ...+.
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~---------~~~------~~~~~~~~~~~~l~~~gl~~~~~~~- 146 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL---------TSL------DESEQKARIAELLDMVGLRSEDADK- 146 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh---------cCC------CHHHHHHHHHHHHHHcCCChhhhhC-
Confidence 24567999999983 44 469999996542100 000 0001133456777777764 22221
Q ss_pred ccCCccccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCC
Q 000647 1243 EVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNAT 1322 (1374)
Q Consensus 1243 ~~Gldt~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaL 1322 (1374)
....||||||||++| |||++++|++|||||||++|
T Consensus 147 ---------~~~~LSgGe~qrv~l------------------------------------aral~~~p~illLDEPt~~L 181 (265)
T TIGR02769 147 ---------LPRQLSGGQLQRINI------------------------------------ARALAVKPKLIVLDEAVSNL 181 (265)
T ss_pred ---------ChhhCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEeCCcccC
Confidence 245799999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHh----cCceEEEecCCCCchh-hccceEEEEcC
Q 000647 1323 SVDVEEQLYRLAKD----MGITFVTSSQRPALIP-FHSLELRLIDG 1363 (1374)
Q Consensus 1323 D~~~e~~l~~~~~~----~~~TvI~IaHRl~~i~-~~~~~l~l~~g 1363 (1374)
|.++.+.+.+.+++ .|.|+|+|+|++..+. +.|+++.|.+|
T Consensus 182 D~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G 227 (265)
T TIGR02769 182 DMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG 227 (265)
T ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCC
Confidence 99998877665542 3899999999998775 78999999654
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-32 Score=296.97 Aligned_cols=165 Identities=28% Similarity=0.396 Sum_probs=141.7
Q ss_pred EEEeeeEEEcCCCCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCC--CcCCccEEEeCCCC-c-----c-ccccE
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-S-----D-LNKEI 515 (1374)
Q Consensus 445 i~~~~v~~~~~~~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl--~~~~~G~I~~~g~~-~-----~-~~~~i 515 (1374)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+ .+|++|+|.++|.+ . . .+..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 46899999986 46799999999999999999999999999999999999 58999999999864 1 1 13459
Q ss_pred EEEecCCCCCcC-CHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChhHHhcCCCCccccCCCCCChhHHHHHHHHHHHc
Q 000647 516 FYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1374)
Q Consensus 516 ~~v~Q~p~l~~~-Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~ 594 (1374)
+|+||+|.++.+ ++++++ +..+ ..||||||||++||||++
T Consensus 80 ~~v~q~~~~~~~~~~~~~l-------------------------------~~~~--------~~LS~G~~qrv~laral~ 120 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL-------------------------------RYVN--------EGFSGGEKKRNEILQLLL 120 (200)
T ss_pred EEeecChhhccCccHHHHH-------------------------------hhcc--------ccCCHHHHHHHHHHHHHh
Confidence 999999987664 444433 1111 469999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEccChhhHh--hccEEEEecC
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA--FHDVVLSLDG 649 (1374)
Q Consensus 595 ~~p~illLDEptsaLD~~~~~~i~~~l~~---~~~TiI~vtH~~~~~~--~~d~il~l~~ 649 (1374)
++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|+++++++
T Consensus 121 ~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~ 180 (200)
T cd03217 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYD 180 (200)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEEC
Confidence 99999999999999999999999888764 4789999999999987 6999999975
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-32 Score=301.27 Aligned_cols=192 Identities=26% Similarity=0.364 Sum_probs=159.1
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccccCCcccEEEecC
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~~~~r~~i~~VpQ 1179 (1374)
|+++||++.|+. +.+++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.... .+.+++++||
T Consensus 3 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~~~~ 80 (207)
T PRK13539 3 LEGEDLACVRGG-RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD-VAEACHYLGH 80 (207)
T ss_pred EEEEeEEEEECC-eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchh-hHhhcEEecC
Confidence 789999999875 56999999999999999999999999999999999999999999999998765322 5678999999
Q ss_pred CCCCC-CcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCCCh
Q 000647 1180 RPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1374)
Q Consensus 1180 ~P~Lf-~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~LSg 1258 (1374)
++.++ ..|+++|+.+.... . ...++++.++++.+++.+..... ...||+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~----------~----------~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 130 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAF----------L----------GGEELDIAAALEAVGLAPLAHLP----------FGYLSA 130 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHh----------c----------CCcHHHHHHHHHHcCCHHHHcCC----------hhhcCH
Confidence 98875 67999999653210 0 01133467788888886543221 346999
Q ss_pred hhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh--
Q 000647 1259 GEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD-- 1336 (1374)
Q Consensus 1259 GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~-- 1336 (1374)
|||||++| |||++++|+++||||||++||..+.+.+.+.+++
T Consensus 131 G~~qrl~l------------------------------------a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 174 (207)
T PRK13539 131 GQKRRVAL------------------------------------ARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL 174 (207)
T ss_pred HHHHHHHH------------------------------------HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999887776543
Q ss_pred -cCceEEEecCCCCchhhccceEEE
Q 000647 1337 -MGITFVTSSQRPALIPFHSLELRL 1360 (1374)
Q Consensus 1337 -~~~TvI~IaHRl~~i~~~~~~l~l 1360 (1374)
.|+|+|+|+|++..++. ++++.+
T Consensus 175 ~~~~tiii~sH~~~~~~~-~~~~~~ 198 (207)
T PRK13539 175 AQGGIVIAATHIPLGLPG-ARELDL 198 (207)
T ss_pred HCCCEEEEEeCCchhhcc-CcEEee
Confidence 48999999999998887 787777
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-32 Score=311.38 Aligned_cols=209 Identities=22% Similarity=0.223 Sum_probs=162.7
Q ss_pred CEEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCC-----CCCeEecCCCcccc--c--cC
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV-----VSGSLTKPSQHIDE--E--AG 1169 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~-----~~G~I~idg~dI~~--~--~~ 1169 (1374)
.|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++| .+|+|.++|.++.. . ..
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGS-NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCC-eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 4899999999975 5699999999999999999999999999999999999987 49999999998862 2 23
Q ss_pred CcccEEEecCCCCCCCc-chHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCcc
Q 000647 1170 SGCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 1248 (1374)
Q Consensus 1170 ~r~~i~~VpQ~P~Lf~G-TlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt 1248 (1374)
+|.+++++||+|.+|++ |+++|+.++..... .. ......++.+.++++.+++...+.. .++.
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~----------~~----~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~ 145 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG----------LV----KSKKELDERVEWALKKAALWDEVKD---RLND 145 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcC----------cc----CCHHHHHHHHHHHHHHcCCccchhh---hhcc
Confidence 46689999999999976 99999975421000 00 0000012335567777776432211 1111
Q ss_pred ccccccCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHH
Q 000647 1249 NLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEE 1328 (1374)
Q Consensus 1249 ~~~~g~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~ 1328 (1374)
....||||||||++| ||||+++|+++||||||++||.++.+
T Consensus 146 ---~~~~LS~G~~qrv~l------------------------------------aral~~~p~llllDEP~~~LD~~~~~ 186 (253)
T PRK14267 146 ---YPSNLSGGQRQRLVI------------------------------------ARALAMKPKILLMDEPTANIDPVGTA 186 (253)
T ss_pred ---ChhhCCHHHHHHHHH------------------------------------HHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 246799999999999 99999999999999999999999998
Q ss_pred HHHHHHHh--cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1329 QLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1329 ~l~~~~~~--~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
.+.+++++ .++|+|+|+|++..+ .+.|+++.|.+|+
T Consensus 187 ~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 225 (253)
T PRK14267 187 KIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGK 225 (253)
T ss_pred HHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCE
Confidence 88776553 368999999999765 5689999996654
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-32 Score=311.17 Aligned_cols=206 Identities=25% Similarity=0.321 Sum_probs=164.9
Q ss_pred EEEeeeEEeCCCcccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEEEe
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYV 1177 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~~V 1177 (1374)
|+++|+++.|++ +.+|+|+||+|+|||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ...+++++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAGG-RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEECC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 689999999865 5799999999999999999999999999999999999999999999999988765 2345579999
Q ss_pred cCCCCC-CCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccccCC
Q 000647 1178 PQRPYT-CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 1256 (1374)
Q Consensus 1178 pQ~P~L-f~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g~~L 1256 (1374)
||+|.+ +..|+++|+.++...... .... .....++.+.++++.+++.+..++. ...|
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~------~~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~L 138 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRS------LWAG------DSPHDAAVVDRALARTELSHLADRD----------MSTL 138 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhh------hccC------CCHHHHHHHHHHHHHcCcHhhhcCC----------cccC
Confidence 999964 567999999865311000 0000 0001123467788888775543332 3579
Q ss_pred ChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHHHHh
Q 000647 1257 SLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD 1336 (1374)
Q Consensus 1257 SgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~~~~ 1336 (1374)
|+|||||++| |||++++|+++||||||++||.++.+.+.+++++
T Consensus 139 S~G~~qrl~l------------------------------------a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (256)
T TIGR03873 139 SGGERQRVHV------------------------------------ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRE 182 (256)
T ss_pred CHHHHHHHHH------------------------------------HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999877765543
Q ss_pred ---cCceEEEecCCCCch-hhccceEEEEcCC
Q 000647 1337 ---MGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1337 ---~~~TvI~IaHRl~~i-~~~~~~l~l~~g~ 1364 (1374)
.|.|+|+++|+++.+ ...|+++.|.+|+
T Consensus 183 ~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 214 (256)
T TIGR03873 183 LAATGVTVVAALHDLNLAASYCDHVVVLDGGR 214 (256)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 489999999999887 6799999996654
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-32 Score=339.79 Aligned_cols=198 Identities=26% Similarity=0.342 Sum_probs=164.0
Q ss_pred CcEEEeeeEEEcCC----CCeeeeeeeEEEeCCCEEEEEcCCCCchhHHHHHHCCCCcCCccEEEeC-CCC----c----
Q 000647 443 NYIEFSGVKVVTPT----GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP-GVG----S---- 509 (1374)
Q Consensus 443 ~~i~~~~v~~~~~~----~~~~l~~isl~i~~Ge~~~IvG~sGsGKSTLl~~l~Gl~~~~~G~I~~~-g~~----~---- 509 (1374)
..++++|+++.|++ ++++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++ |.+ .
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 47999999999853 2579999999999999999999999999999999999999999999995 421 0
Q ss_pred ----cccccEEEEecCCCCCc-CCHHHHhcCCCCCCcccCCCCHHHHHHHHHHcCChh-----HHhcCCCCccccCCCCC
Q 000647 510 ----DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-----LLDRYPPEKEINWGDEL 579 (1374)
Q Consensus 510 ----~~~~~i~~v~Q~p~l~~-~Tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----~~~~~~~~~~~~~g~~L 579 (1374)
..+++++|+||++.++. .|++||+.++.... ......++++.++++.+++.+ +.++.+ .+|
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~--------~~L 428 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE-LPDELARMKAVITLKMVGFDEEKAEEILDKYP--------DEL 428 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCCCCccchhhhhCCh--------hhC
Confidence 12457999999987766 59999998642110 001112345778899999964 456655 689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEccChhhHh-hccEEEEecC
Q 000647 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 580 SgGqkQRlalARal~~~p~illLDEptsaLD~~~~~~i~~~l~~----~~~TiI~vtH~~~~~~-~~d~il~l~~ 649 (1374)
|||||||++|||||+.+|+++||||||++||+.+.+.+++.+++ .|.|+|+|||+++.+. .+|++++|++
T Consensus 429 SgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~ 503 (520)
T TIGR03269 429 SEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRD 503 (520)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999988753 4899999999999875 6999999975
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-32 Score=312.64 Aligned_cols=203 Identities=22% Similarity=0.272 Sum_probs=163.7
Q ss_pred CEEEeeeEEeCCCc-ccccccceEEEeCCCeEEEEcCCCCcHHHHHHHHhcCCCCCCCeEecCCCccccc--cCCcccEE
Q 000647 1099 SISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIF 1175 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~-~~vL~~ls~~I~~Ge~v~IvG~SGsGKSTl~~~L~rl~~~~~G~I~idg~dI~~~--~~~r~~i~ 1175 (1374)
.|+++||++.|++. +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ...|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 58999999999764 5799999999999999999999999999999999999999999999999988654 23456799
Q ss_pred EecCCCC--CCCcchHHHhccCCChhHHHHHHHhhccCCCcccccCCCChHHHHHHHHhCCCchhhhhhccCCccccccc
Q 000647 1176 YVPQRPY--TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1374)
Q Consensus 1176 ~VpQ~P~--Lf~GTlR~Nl~yp~~~~e~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~v~~~~~Gldt~~~~g 1253 (1374)
||||+|. ++..|+++|+.++.... +. ..+..++.+.++++.+++.+..+. ..
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~----------~~ 140 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENH----------AV------PYDEMHRRVSEALKQVDMLERADY----------EP 140 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhc----------CC------CHHHHHHHHHHHHHHcCCchhhhC----------Cc
Confidence 9999994 45568999997653100 00 000012345667777777544332 23
Q ss_pred cCCChhhhhhhccccchhhHHhhhcccccchhhhHhhccccCCCCcccccccccccCcEEEeeccCCCCCHHHHHHHHHH
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL 1333 (1374)
Q Consensus 1254 ~~LSgGQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~PkillLDEaTSaLD~~~e~~l~~~ 1333 (1374)
..||+|||||++| |||++++|+++||||||++||..+.+.+.+.
T Consensus 141 ~~LS~G~~qrl~l------------------------------------aral~~~p~lllLDEPt~~LD~~~~~~l~~~ 184 (269)
T PRK13648 141 NALSGGQKQRVAI------------------------------------AGVLALNPSVIILDEATSMLDPDARQNLLDL 184 (269)
T ss_pred ccCCHHHHHHHHH------------------------------------HHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 5799999999999 9999999999999999999999999887776
Q ss_pred HHh----cCceEEEecCCCCchhhccceEEEEcC
Q 000647 1334 AKD----MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1334 ~~~----~~~TvI~IaHRl~~i~~~~~~l~l~~g 1363 (1374)
+++ .|+|+|+|+|++..+...|+++.|.+|
T Consensus 185 L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G 218 (269)
T PRK13648 185 VRKVKSEHNITIISITHDLSEAMEADHVIVMNKG 218 (269)
T ss_pred HHHHHHhcCCEEEEEecCchHHhcCCEEEEEECC
Confidence 543 389999999999888788899998554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1374 | ||||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-14 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-13 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-13 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-13 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-12 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-04 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-11 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-04 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-10 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-10 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 3e-10 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-09 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-09 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-09 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-09 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-09 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-09 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 5e-09 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-09 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-09 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-09 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-09 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 8e-09 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-08 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-08 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-08 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-08 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 4e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 5e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 5e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 6e-08 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-07 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 6e-07 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 6e-07 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 8e-07 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-06 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 5e-06 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 7e-06 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 1e-05 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-05 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-05 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-05 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-05 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-05 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-05 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 3e-05 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-05 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-05 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 4e-05 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-05 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-04 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-04 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-04 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-04 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-04 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 3e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 7e-04 |
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1374 | |||
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-22 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 5e-13 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 8e-04 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-19 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-13 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-05 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-04 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-18 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-15 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-04 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 6e-04 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-18 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-15 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-05 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-17 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 7e-06 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-17 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-15 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-04 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 8e-15 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 8e-04 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-05 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 3e-14 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 3e-14 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-14 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-04 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-13 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 6e-04 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-13 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 3e-05 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 6e-13 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 9e-13 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-12 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 3e-11 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 3e-11 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 8e-06 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 7e-11 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-10 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-10 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 5e-05 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 5e-10 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-04 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 5e-10 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 7e-10 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 9e-10 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 3e-09 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 4e-09 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 5e-09 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 1e-08 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-08 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 3e-08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 4e-08 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 4e-08 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 7e-08 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 8e-08 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 8e-08 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 6e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 8e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-04 |
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-22
Identities = 159/878 (18%), Positives = 320/878 (36%), Gaps = 137/878 (15%)
Query: 386 IISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYI 445
++ S+G S + G A + + +I + SI+ S +G + + N +
Sbjct: 334 VLIGAFSVGQASPNIEAFANARGAAYEVFK--IIDNKPSIDSFSK--SGHKPDNIQGN-L 388
Query: 446 EFSGVKVVTPT-GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
EF + P+ V + + L LKV+ G + + G +G GKS+ +++ L+ + G ++
Sbjct: 389 EFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448
Query: 504 KPGVG-SDLN-----KEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELL 555
G +N + I V Q P T+ + + Y + E+E + +
Sbjct: 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIE--------KAV 500
Query: 556 KNVDLEYLLDRYPP-------EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
K + + + P E+ G +LS G++QR+ +AR PK +LDE TSA
Sbjct: 501 KEANAYDFIMKLPHQFDTLVGER----GAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556
Query: 609 VTTDMEER-FCAKVRAM-GTSCITISHRPALVAFHDVVLSLDGEGEWRV-----HD---K 658
+ T+ E A +A G + I I+HR + V DV+ D G + HD +
Sbjct: 557 LDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFD-GG--VIVEQGNHDELMR 613
Query: 659 RDG--SSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAAS 716
G +V + ++ +++K + + + S
Sbjct: 614 EKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHD 673
Query: 717 PIADHNVPLPVFPQLKSAP--RILPLRVADMFKVLVPTVFDK-QGAQLLAVAFLVVSRTW 773
+ + + A RIL L + +V G A + +
Sbjct: 674 QDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVI------ 727
Query: 774 ISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRH-LTARLALGWRIR 832
S + Q+ ++ L+ + + SFI ++ + R
Sbjct: 728 FSKVVGVFTNGGPPETQRQN-SNLFSLLFLIL---GIISFITFFLQGFTFGKAGEILTKR 783
Query: 833 MTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKL-----------TTDLSGLVT 880
+ + KS LR++ S++ ++ ++ R+ +D ++ +++ L T
Sbjct: 784 LRYMVFKSMLRQDVSWFDDPKNTTGALTT--RLANDAAQVKGATGSRLAVIFQNIANLGT 841
Query: 881 GMVKPSVDI-LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGT 939
G++ I L + W++ L + + ++ G + G +++LEG+
Sbjct: 842 GII-----ISLIYGWQL-TL-----LLLAIVPIIAIAGVVEMKM-LSGQALKDKKELEGS 889
Query: 940 FRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQL 999
+ E + +V RE+ + L +KK +FGI F Q
Sbjct: 890 GKIATEAIENF-RTVVSLT---REQKFETMYAQSLQIPYRNAMKKAHVFGIT--FSFTQA 943
Query: 1000 PHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLA-SVVSQSFLAFGDILELHRKFVE 1058
++ + + LV+ Q + L S + +A G + + +
Sbjct: 944 MMYFSYAAAFRFGAY------LVT-QQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAK 996
Query: 1059 LSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS---QKLL 1115
+ + I + E EI S + ++ FS + P+ +L
Sbjct: 997 ATVSASHIIRIIEK-------TPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVL 1049
Query: 1116 ARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIF 1175
+ L+ E+ G++L + G +G GKS+V ++L + ++GS+ +D G I
Sbjct: 1050 -QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF-----LD-----GKEIK 1098
Query: 1176 ------------YVPQRPYTCLGTLRDQIIYPLSREEA 1201
V Q P ++ + I Y +
Sbjct: 1099 QLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVV 1136
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 5e-13
Identities = 105/537 (19%), Positives = 197/537 (36%), Gaps = 120/537 (22%)
Query: 151 ILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVD------GRIT 204
I+ T L+ + R F++M +S D G +T
Sbjct: 760 IISFITFFLQGFTFGKAGEILTKRLRY--------MVFKSMLRQDVSWFDDPKNTTGALT 811
Query: 205 HPEQRLASDVPRFCSELSELVQDDL-----------TAVTDGLLYTWRL---CSYASPKY 250
RLA+D +++ L T + L+Y W+L P
Sbjct: 812 ---TRLAND----AAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVP-- 862
Query: 251 VFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEE 310
+A V+ M+ + K + ++ E RT + E K
Sbjct: 863 -IIAIAGVVEM-KMLSGQALKDKKELEGSGKIATEAI---ENFRT----VVSLTREQK-- 911
Query: 311 SHIQQKF-KALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTST 369
+ + ++L R + FG+ F + + A F G
Sbjct: 912 --FETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAA-----FRFG-------- 956
Query: 370 LGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHE--------LMVISR 421
A +++ ++ + + + ++S +A + + +I +
Sbjct: 957 ---AYLVTQQLMTFE---NVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEK 1010
Query: 422 ELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLV-ENLTLKVEPGSNLLITGP 479
I+ S G + E N ++FSGV PT ++ V + L+L+V+ G L + G
Sbjct: 1011 TPEIDSYST--QGLKPNMLEGN-VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGS 1067
Query: 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLN-----KEIFYVPQRPYTAVGTLRDQL 533
+G GKS++ ++L + ++G + G LN ++ V Q P ++ + +
Sbjct: 1068 SGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENI 1127
Query: 534 IY----PLTSDQEVEPLTHGGMVELLKNVDL----EYLLDRYPPEKEI-NWGDELSLGEQ 584
Y + S +E+ K ++ + L D+Y + + G +LS G++
Sbjct: 1128 AYGDNSRVVSYEEIV--------RAAKEANIHQFIDSLPDKY--NTRVGDKGTQLSGGQK 1177
Query: 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV------RAM-GTSCITISHR 634
QR+ +AR +P +LDE TSA+ T+ E KV +A G +CI I+HR
Sbjct: 1178 QRIAIARALVRQPHILLLDEATSALDTESE-----KVVQEALDKAREGRTCIVIAHR 1229
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 8e-04
Identities = 71/386 (18%), Positives = 140/386 (36%), Gaps = 82/386 (21%)
Query: 801 IGVSVLQSAASSFIAPSIRHLTA-RLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSI 858
IG VL ++I S L A R +IR Q + + + ++
Sbjct: 117 IGAGVL---IVAYIQVSFWCLAAGRQIH--KIR--QKFFHAIMNQEIGWFD----VHDVG 165
Query: 859 DADQRITHDLEK---------------LTTDLSGLVTGMVKPSVDILWFTWRMKALTGQR 903
+ + R+T D+ K + T G + G W++ +
Sbjct: 166 ELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIG--------FTRGWKLTLVI--- 214
Query: 904 GVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAE-------SVAF 956
+AI L + + ++ T +E + + A AE +V
Sbjct: 215 -LAISPVLGLSAGIWAKILSS----FTDKELH-------AYAKAGAVAEEVLAAIRTVIA 262
Query: 957 FGGGAREKAMIESRFRELLEHSLLL-LKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEH 1015
FGG +E R+ LE + L +KK I L ++ L+ Y
Sbjct: 263 FGGQKKE----LERYNNNLEEAKRLGIKKAITANISMGAA--FLLIYASYALAFWY---- 312
Query: 1016 KGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDA 1075
G ++S + + L SV+ +F + G F G +F++ +D
Sbjct: 313 -GTSLVISKEYSIGQVLTVFFSVLIGAF-SVGQASPNIEAFANARGAAYEVFKI---IDN 367
Query: 1076 AQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS---QKLLARQLTFEIVPGKSLLVT 1132
+P I S+ + Q ++ F + PS ++L + L ++ G+++ +
Sbjct: 368 -KP---SIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQIL-KGLNLKVKSGQTVALV 422
Query: 1133 GPNGSGKSSVFRVLRGLWPVVSGSLT 1158
G +G GKS+ ++++ L+ + G ++
Sbjct: 423 GNSGCGKSTTVQLMQRLYDPLDGMVS 448
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 3e-19
Identities = 63/319 (19%), Positives = 107/319 (33%), Gaps = 75/319 (23%)
Query: 373 AKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHEL-MVISRELSIEDKSPQ 431
AK + L + VI+ L L D IH + S +
Sbjct: 178 AKAIRELLKNKYVIVV-----------DHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA 226
Query: 432 RNGSRNY----------------------------FSEANYIEFSGVKVVTPTGNVLVEN 463
R G N+ S+ + K++ G+ +
Sbjct: 227 RVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVV 286
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR-- 521
+ + G + I GPNG GK++ R+L G G + + + Y PQR
Sbjct: 287 DNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------QILSYKPQRIF 340
Query: 522 --PYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 578
V L + L++ E+ K ++L LL+ ++
Sbjct: 341 PNYDGTVQQYLENASKDALSTSSWF-------FEEVTKRLNLHRLLESNV--------ND 385
Query: 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF-CAKV-----RAMGTSCITIS 632
LS GE Q+L +A + +LD+ +S + D+EER+ AK R I
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYL--DVEERYIVAKAIKRVTRERKAVTFIID 443
Query: 633 HRPALVAFH-DVVLSLDGE 650
H ++ + D ++ GE
Sbjct: 444 HDLSIHDYIADRIIVFKGE 462
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 3e-13
Identities = 36/204 (17%), Positives = 80/204 (39%), Gaps = 33/204 (16%)
Query: 468 VEPGSNLLITGPNGSGKSSLFRVL-GGLWPLVSGHIAKPGVGSDLNK----EIFYVPQRP 522
+ + L + G NG GK+++ ++L G + P +K G L + EI+ +
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81
Query: 523 YTAVGTLRDQLIYPLTSDQEVEPLTHGGM---------VELLKNVDLEYLLDRYPPEKEI 573
Y+ + ++ Y + + ++ + + E+ + +++ L ++
Sbjct: 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDA----- 136
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM------GTS 627
+ LS G QRL +A + I D+ +S + D+ ER +
Sbjct: 137 ---NILSGGGLQRLLVAASLLREADVYIFDQPSSYL--DVRER--MNMAKAIRELLKNKY 189
Query: 628 CITISHRPALVA-FHDVVLSLDGE 650
I + H ++ D++ + GE
Sbjct: 190 VIVVDHDLIVLDYLTDLIHIIYGE 213
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 6e-05
Identities = 50/316 (15%), Positives = 96/316 (30%), Gaps = 101/316 (31%)
Query: 1038 VVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQ 1097
VS+S+ A I + ++ R E++ +L D ++ KW T
Sbjct: 219 RVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKW--TKII 276
Query: 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL 1157
+ +L + E G+ + + GPNG GK++ R+L G GS+
Sbjct: 277 KKLGDFQLVVDN-----------GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSV 325
Query: 1158 TKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVD 1217
T Q + + + Q I+P + D
Sbjct: 326 TPEKQIL----------------------SYKPQRIFPNYDGTVQQYL------ENASKD 357
Query: 1218 TTNILDSYLKTILEGVRLSYLLERE--EVGWDANLNWEDILSLGEQQRLGMVSHLVLIQL 1275
+ + + + + + L LLE + LS GE Q+L +
Sbjct: 358 ALSTSSWFFEEVTKRLNLHRLLESNVND------------LSGGELQKLYI--------- 396
Query: 1276 CSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQ------ 1329
A + +LD+ ++ +DVEE+
Sbjct: 397 ---------------------------AATLAKEADLYVLDQPSSY--LDVEERYIVAKA 427
Query: 1330 LYRLAKDMGIT--FVT 1343
+ R+ ++ +
Sbjct: 428 IKRVTRERKAVTFIID 443
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 36/228 (15%), Positives = 70/228 (30%), Gaps = 66/228 (28%)
Query: 1125 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT-KPSQHIDEEAGSGCGIFYVPQRPYT 1183
L V G NG GK++V ++L G G K + + G I+ + Y+
Sbjct: 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYS 83
Query: 1184 CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREE 1243
+ +I + E + L G +++ + + E + ++ L +
Sbjct: 84 NELKIVHKI------QYVEYASKFLKGTVNEILTKIDERG-KKDEVKELLNMTNLWNK-- 134
Query: 1244 VGWDANLNWEDI--LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSY 1301
D LS G QR +L+ +
Sbjct: 135 ----------DANILSGGGLQR-------LLVAASLLR---------------------- 155
Query: 1302 KARLFFHKPKFGILDECTNATSVDVEEQ------LYRLAKDMGITFVT 1343
+ I D+ ++ +DV E+ + L K+ + V
Sbjct: 156 -------EADVYIFDQPSSY--LDVRERMNMAKAIRELLKNKYVIVVD 194
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 1e-18
Identities = 38/246 (15%), Positives = 87/246 (35%), Gaps = 29/246 (11%)
Query: 413 IHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGS 472
I + R +++ + S + + +K G+ ++ +
Sbjct: 322 IPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSE 379
Query: 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQ 532
L++ G NG+GK++L ++L G G S ++I + +
Sbjct: 380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQL--FFKK 437
Query: 533 LIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592
+ + Q +++K + ++ ++D+ LS GE QR+ +
Sbjct: 438 IRGQFLNPQFQT--------DVVKPLRIDDIIDQEV--------QHLSGGELQRVAIVLA 481
Query: 593 FYHKPKFAILDECTSAVTTDMEERF-CAKV-----RAMGTSCITISHRPALVAFH-DVVL 645
++DE ++ + D E+R C+KV + + H + + D V+
Sbjct: 482 LGIPADIYLIDEPSAYL--DSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVI 539
Query: 646 SLDGEG 651
+G
Sbjct: 540 VFEGIP 545
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 7e-15
Identities = 43/220 (19%), Positives = 72/220 (32%), Gaps = 37/220 (16%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV--------- 507
N + PG L + G NG GKS+ ++L G G P
Sbjct: 89 ANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFR 148
Query: 508 GSDL-NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV------------EL 554
GS+L N + + I P V+ G ++
Sbjct: 149 GSELQNYFTKMLEDDIKAIIKPQYVDNI-PRAIKGPVQ--KVGELLKLRMEKSPEDVKRY 205
Query: 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTTD 612
+K + LE +L R ++LS GE QR + + + DE +S V
Sbjct: 206 IKILQLENVLKRDI--------EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQR 257
Query: 613 ME-ERFCAKVRAMGTSCITISHRPALVAFH-DVVLSLDGE 650
+ + + A I + H +++ + D V + G
Sbjct: 258 LNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGV 297
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 24/126 (19%)
Query: 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKP---------------SQHID 1165
PG+ L + G NG GKS+ ++L G G P +
Sbjct: 98 PTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFT 157
Query: 1166 EEAGSGCGIFYVPQR----PYTCLGTLRDQI-IYPLSREEAELRALKLHGKGEKLVDTTN 1220
+ PQ P G ++ + L E++ + K++ N
Sbjct: 158 KMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRY----IKILQLEN 213
Query: 1221 ILDSYL 1226
+L +
Sbjct: 214 VLKRDI 219
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-04
Identities = 34/235 (14%), Positives = 69/235 (29%), Gaps = 94/235 (40%)
Query: 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 1180
E + L++ G NG+GK+++ ++L G G + PQ+
Sbjct: 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLN-----------VSMKPQK 421
Query: 1181 PYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKT-ILEGVRLSYL 1238
GT+R + + L+ +T +++ +R+ +
Sbjct: 422 IAPKFPGTVRQLFFKKIRGQ---------------------FLNPQFQTDVVKPLRIDDI 460
Query: 1239 LERE--EVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFF 1296
+++E LS GE QR+ +V L +
Sbjct: 461 IDQEVQH------------LSGGELQRVAIVLALGI------------------------ 484
Query: 1297 PPFSYKARLFFHKPKFGILDECTNATSVDVEEQ------LYRLAKDMGIT--FVT 1343
++DE + +D E++ + R T V
Sbjct: 485 ------------PADIYLIDEPSAY--LDSEQRIICSKVIRRFILHNKKTAFIVE 525
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 3e-18
Identities = 48/200 (24%), Positives = 76/200 (38%), Gaps = 29/200 (14%)
Query: 445 IEFSGVKVV---TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
I+ V + +EN+ L+V G ++I GPNGSGK++L R + GL P SG+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP-YSGN 59
Query: 502 IAKPGVG-SDLNKEIFYVPQRP--YTAVGTLRDQLIYPL----TSDQEVEPLTHGGMVEL 554
I G+ + I Y P Y T+ D + E+
Sbjct: 60 IFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFL--------EM 111
Query: 555 LKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
LK + L E +L R +LS G+ + + +P+ LDE V
Sbjct: 112 LKALKLGEEILRRKL--------YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 614 EERFCAKVRAMGTSCITISH 633
++ G I ++H
Sbjct: 164 RHVISRYIKEYGKEGILVTH 183
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 31/228 (13%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA- 503
I+ + + G +++ ++ ++ G ++ G NG+GK++L +L P SG +
Sbjct: 22 IQLDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80
Query: 504 ---KPGVGS----DLNKEIFYVPQR---PYTAVGTLRD----QLIYPLTSDQEVEPLTHG 549
PG + + I +V + + D + Q+++
Sbjct: 81 FGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN 140
Query: 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
+LLK V + +Y LS GE+QR+ +AR +P+ ILDE + +
Sbjct: 141 EAHQLLKLVGMSAKAQQYIG--------YLSTGEKQRVMIARALMGQPQVLILDEPAAGL 192
Query: 610 TTDMEERFCAKVRAM-----GTSCITISHRP--ALVAFHDVVLSLDGE 650
E + + ++ + I ++H F ++L DG+
Sbjct: 193 DFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQ 240
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 1e-17
Identities = 47/240 (19%), Positives = 91/240 (37%), Gaps = 31/240 (12%)
Query: 420 SRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 479
+ + + + ++V G+ +E +++ G + I GP
Sbjct: 261 DENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGP 320
Query: 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQL-IYPLT 538
NG GK++ ++L G+ G I + + + Y PQ + +Y L
Sbjct: 321 NGIGKTTFVKMLAGVEEPTEGKI-------EWDLTVAYKPQY-----IKADYEGTVYELL 368
Query: 539 SDQEVEPLTHGGMV-ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597
S + L ELLK + + L DR +ELS GE QR+ +A
Sbjct: 369 SKIDASKLNSNFYKTELLKPLGIIDLYDREV--------NELSGGELQRVAIAATLLRDA 420
Query: 598 KFAILDECTSAVTTDMEERF-CAKV-----RAMGTSCITISHRPALV-AFHDVVLSLDGE 650
+LDE ++ + D+E+R ++ + + + H ++ D ++ +GE
Sbjct: 421 DIYLLDEPSAYL--DVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGE 478
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 3e-15
Identities = 54/217 (24%), Positives = 88/217 (40%), Gaps = 38/217 (17%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--LVSGHIAKPGV-----GSD 510
N V V+ G + I GPNG+GKS+ ++L G L + + GV G++
Sbjct: 34 NAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNE 93
Query: 511 L--------NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH----GGMVELLKNV 558
L N EI V + Y LI + +E L G + E++K +
Sbjct: 94 LQNYFEKLKNGEIRPVVKPQYVD-------LIPKAVKGKVIELLKKADETGKLEEVVKAL 146
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTTDME-E 615
+LE +L+R LS GE QR+ +A F DE +S + +
Sbjct: 147 ELENVLEREI--------QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA 198
Query: 616 RFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEG 651
R ++ G S + + H A++ D++ + GE
Sbjct: 199 RAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEP 235
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 5e-05
Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 17/119 (14%)
Query: 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRG-LWPVVSGSLTKPSQHIDEEAGS--------- 1170
+ G + + GPNG+GKS+ ++L G L P + G I G+
Sbjct: 42 PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKL 101
Query: 1171 -GCGIFYVPQRPYTCL--GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYL 1226
I V + Y L ++ ++I L + + + ++ K ++ N+L+ +
Sbjct: 102 KNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEV----VKALELENVLEREI 156
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 51/228 (22%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+ + N L + L + G L + G NG GKS+L +L G+ + G I
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-- 62
Query: 505 PGVGSDLNKEIFYVPQR-----PYTA-----------VGTLRDQLIYPLTSDQEVEPLTH 548
++ + I +VPQ Y+ + T P + D +V
Sbjct: 63 -----EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK----PKSHDYQV----- 108
Query: 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
++ L ++L +L R LS G++Q + +AR + K +LDE TSA
Sbjct: 109 --AMQALDYLNLTHLAKREF--------TSLSGGQRQLILIARAIASECKLILLDEPTSA 158
Query: 609 VTTDM--EERFCAKV----RAMGTSCITISHRPALVA-FHDVVLSLDG 649
+ D+ ++ + + ++ + + +H+P V + L L+
Sbjct: 159 L--DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNK 204
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 7e-06
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 1110 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG 1169
++ L +QL F++ G L V G NG GKS++ +L G+ + G + E
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI--------EVYQ 66
Query: 1170 SGCGIFYVPQRP 1181
S I +VPQ
Sbjct: 67 S---IGFVPQFF 75
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-17
Identities = 44/206 (21%), Positives = 83/206 (40%), Gaps = 37/206 (17%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G+ +E ++ G + I GPNG GK++ ++L G+ G + + + +
Sbjct: 368 GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------EWDLTVA 420
Query: 517 YVPQR----PYTAVGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEK 571
Y PQ V L ++ L S+ ELLK + + L DR
Sbjct: 421 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKT--------ELLKPLGIIDLYDRNV--- 469
Query: 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF-CAKV-----RAMG 625
++LS GE QR+ +A +LDE ++ + D+E+R ++
Sbjct: 470 -----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYL--DVEQRLAVSRAIRHLMEKNE 522
Query: 626 TSCITISHRPALV-AFHDVVLSLDGE 650
+ + + H ++ D ++ +GE
Sbjct: 523 KTALVVEHDVLMIDYVSDRLIVFEGE 548
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-15
Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 37/205 (18%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL-------WPLVSGHIAKPGVGSD 510
N V V+ G + I GPNG+GK++ ++L G ++ + G++
Sbjct: 104 NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE 163
Query: 511 L--------NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH----GGMVELLKNV 558
L N EI V + Y L+ + E L G E++K +
Sbjct: 164 LQNYFERLKNGEIRPVVKPQYVD-------LLPKAVKGKVRELLKKVDEVGKFEEVVKEL 216
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTTDME-E 615
+LE +LDR +LS GE QR+ +A K F DE +S + ++
Sbjct: 217 ELENVLDREL--------HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVA 268
Query: 616 RFCAKVRAMGTSCITISHRPALVAF 640
R ++ G + + + H A++ +
Sbjct: 269 RVIRRLANEGKAVLVVEHDLAVLDY 293
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 17/131 (12%)
Query: 1111 SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP------VVSGSLTKPSQHI 1164
+ G + + GPNG+GK++ ++L G S +
Sbjct: 102 GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161
Query: 1165 DE-----EAGSGCGIFYVPQRPYTCL--GTLRDQIIYPLSREEAELRALKLHGKGEKLVD 1217
+E E I V + Y L ++ ++ L + + + ++ K ++
Sbjct: 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEV----VKELE 217
Query: 1218 TTNILDSYLKT 1228
N+LD L
Sbjct: 218 LENVLDRELHQ 228
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 8e-15
Identities = 33/162 (20%), Positives = 72/162 (44%), Gaps = 27/162 (16%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-GSDLNKEI 515
++E +T+ +E G+ + GPNG GK++L + + + G I GV + + +I
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80
Query: 516 FYVPQRP--YTAVGTLRDQL-----IYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRY 567
F++P+ + ++ D L +Y + ++ + + L++V++ L +
Sbjct: 81 FFLPEEIIVPRKI-SVEDYLKAVASLYGVKVNKNEIM--------DALESVEVLDLKKKL 131
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
ELS G +R+ +A + +LD+ A+
Sbjct: 132 ---------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 164
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 8e-04
Identities = 36/235 (15%), Positives = 77/235 (32%), Gaps = 79/235 (33%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178
+T I G + GPNG GK+++ + + + G + I + G IF++P
Sbjct: 28 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGK---IFFLP 84
Query: 1179 QRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 1236
+ + ++ D + A L +K + + + LE V +
Sbjct: 85 EEIIVPRKI-SVEDYLKA-----VASLYGVK-------------VNKNEIMDALESVEVL 125
Query: 1237 YLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFF 1296
L ++++G LS G +R+ +
Sbjct: 126 DL--KKKLG---------ELSQGTIRRVQL------------------------------ 144
Query: 1297 PPFSYKARLFFHKPKFGILDECTNATSVDVE------EQLYRLAKDMGITFVTSS 1345
A + +LD+ ++D + + + + K+ GI ++S
Sbjct: 145 ------ASTLLVNAEIYVLDDPV--VAIDEDSKHKVLKSILEILKEKGIVIISSR 191
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.6 bits (190), Expect = 2e-14
Identities = 110/730 (15%), Positives = 218/730 (29%), Gaps = 224/730 (30%)
Query: 309 EESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTS 368
E Q ++K + D++ +QD L +I+ +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK------DAVSG 63
Query: 369 TLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGY---ADRIHELMVISRELSI 425
TL ++ L ++ F R+N Y I
Sbjct: 64 TL---RLFWTLLSKQEEMVQKFVE------EVLRIN----YKFLMSPIKT---------- 100
Query: 426 EDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNV----LVENLT---LKVEPGSNLLITG 478
E + P +R Y + + + ++ +V NV L L++ P N+LI G
Sbjct: 101 EQRQPSMM-TRMYIEQRDRL-YNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 538
GSGK+ + V ++ +IF++ + +
Sbjct: 158 VLGSGKTW----------VALDVCLSYKVQCKMDFKIFWL------NLKNCN-------S 194
Query: 539 SDQEVEPLTHGGMVELLKNVDLEY--LLDR-YPPEKEINWGDELSLGEQQRLGMARLFYH 595
+ +E L +LL +D + D + I+ Q L RL
Sbjct: 195 PETVLEMLQ-----KLLYQIDPNWTSRSDHSSNIKLRIHS-------IQAEL--RRLLKS 240
Query: 596 KP-KFA--ILDE-CTSAVTTDMEERFCAKVRAMGTSC-ITISHRPALVAFHDVVLSLDGE 650
KP + +L + A SC I ++ R V D +
Sbjct: 241 KPYENCLLVLLNVQNAKA-----------WNAFNLSCKILLTTRFKQVT--DFL------ 281
Query: 651 GEWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVS 710
++ T ++ + T + ++ K + + + Q
Sbjct: 282 ----------SAATTTHISLDHHSMTLTPDEVKSL-----L--LK----YLDCRPQD--- 317
Query: 711 EVIAASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVS 770
LP + P R++ + +
Sbjct: 318 --------------LP-----REVLTTNPRRLS-II-----------AESI--------- 337
Query: 771 R----TWI------SDRIASLNGTTVKYVLEQD--KASFVRLIGVSVLQSAASSFIAPSI 818
R TW D++ ++ +++ VLE + F RL SV S+ I P
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLN-VLEPAEYRKMFDRL---SVFPP--SAHI-P-- 388
Query: 819 RHLTARLALGWR-------IRMTQHLLKSYL----RKNSFYKVFN--MSSKSIDADQRIT 865
T L+L W + + L K L K S + + + K ++
Sbjct: 389 ---TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 866 HD--LEKLTTDLSGLVTGMVKPSVDILWFT---WRMKALTGQRGVAILYAYMLLGLGFLR 920
H ++ + ++ P +D +++ +K + L+ + L FL
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-EHPERMTLFRMVFLDFRFLE 504
Query: 921 -------SVTPEFGDLTSREQQLEGTFRFM---HERLRAHAESVAFFGGGAREKAMIESR 970
+ G + + QQL+ ++ + ++ F E +I S+
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN-LICSK 563
Query: 971 FRELLEHSLL 980
+ +LL +L+
Sbjct: 564 YTDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 4e-13
Identities = 78/477 (16%), Positives = 141/477 (29%), Gaps = 130/477 (27%)
Query: 963 EKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALV 1022
E + +++++L +D+F K + ++++
Sbjct: 10 ETGEHQYQYKDILSV---FEDA-----FVDNFDCKDVQDMP---------------KSIL 46
Query: 1023 STQGELAHALRFLASVVSQSFLAFGDILELHRK-----FVELSGGINRIFELEEL-LDAA 1076
S + E+ H + VS + F L ++ FVE IN F + + +
Sbjct: 47 SKE-EIDHIIM-SKDAVSGTLRLF-WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 1077 QPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNG 1136
QP Q Y D+ F+K ++ L RQ E+ P K++L+ G G
Sbjct: 104 QPSMMTRMYIEQR---DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 1137 SGKSS-VFRVLRGL-----------WPVVSGSLTKPSQ----------HIDEEAGSGCGI 1174
SGK+ V W + + P ID S
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 1175 FYVP----------------QRPY-TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVD 1217
+PY CL L + + A L K L+
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN------VQNAKAWNAFNLSCK--ILLT 271
Query: 1218 T-----TNILDSYLKTILEGVRLSYLLEREEVGWDANL--NW--EDILSLGEQ------Q 1262
T T+ L + T + S L +EV +L + L + +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEV---KSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 1263 RLGMVSHLVLIQLCSIN-----KISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDE 1317
RL +++ + L + + +L +I L P Y+ ++F + +
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-VLEPAEYR-KMFD---RLSVFPP 383
Query: 1318 CTNATSVDVEEQL---------YRLAKDMGITFVTSS-----QRPALIPFHSLELRL 1360
S + L + S + + I S+ L L
Sbjct: 384 -----SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 3e-07
Identities = 94/661 (14%), Positives = 185/661 (27%), Gaps = 195/661 (29%)
Query: 677 ETDRQ----SDAMAV-EQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQL 731
ET D ++V E AFV + F Q +++ I DH +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFV---DN--FDCKDVQDMPKSILSKEEI-DHIIMSK----- 58
Query: 732 KSAPRILPLRVADMFKVLVPTVFDKQ--GAQLLAVAFLVVSRTWISDRIASLN----GTT 785
+ L T+ KQ Q L ++ ++ I + T
Sbjct: 59 ---DAVSGTLR------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 786 VKYVLEQD----------KASFVRLIGVSVLQSAA-------------------SSFIAP 816
Y+ ++D K + RL L+ A +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 817 SIRHLTARLALG----W----RIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDL 868
+ + W + +L+ + + Y++ + D I +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--MLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 869 EKLTTDLSGLVTGMVKP-SVDIL---WFTWRMKAL---------TGQRGVAILYAYMLLG 915
+ +L L+ + +L A T + V ++
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT---DFLSAA 284
Query: 916 LGFLRSVTPEFGDLTSREQQLEGTF-RFMHER---LRAHAES-----VAFFGGGARE-KA 965
S+ LT E ++ +++ R L + ++ R+ A
Sbjct: 285 TTTHISLDHHSMTLTPDE--VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 966 MIE-------SRFRELLEHSLLLLK----KK--WLFGILDDFVTKQLPHNVTWGLSLLYA 1012
+ + ++E SL +L+ +K + +P + LSL++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--HIPTIL---LSLIWF 397
Query: 1013 ----------MEHKGDRALVSTQGELA----HALRFLASVVSQSFLAFGDILELHRKFVE 1058
+ +LV Q + + ++ V + + LHR V+
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE------NEYALHRSIVD 451
Query: 1059 LSGGINRIFELEELLDAAQPGDDEISGS--SQHKWNSTDYQDSISFSKLDIITPSQKLLA 1116
I + F+ ++L+ P D+ S H N + F +
Sbjct: 452 -HYNIPKTFDSDDLIP---PYLDQYFYSHIGHHLKNIEHPERMTLFRMV----------- 496
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
L F + K + + S+ L+ L FY
Sbjct: 497 -FLDFRFLEQK-IRHDSTAWNASGSILNTLQQL------------------------KFY 530
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALK--LHGKGEKLV--DTTNILDSYLKTILEG 1232
+PY C + Y E + A+ L E L+ T++L L E
Sbjct: 531 ---KPYIC----DNDPKY-----ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Query: 1233 V 1233
+
Sbjct: 579 I 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 7e-05
Identities = 71/503 (14%), Positives = 139/503 (27%), Gaps = 144/503 (28%)
Query: 39 YLKSRFS--SKKP----DAFGHY-NGL-GDSERKPDKAVANRSNIKKANQKKGGLKSLQV 90
+L S ++P + + L D++ V +R ++ + + L L+
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SR--LQPYLKLRQALLELRP 149
Query: 91 LAAILLSEMGKMGARDLLALV------------GIVVLRTALSNR----LAKVQGFLF-- 132
+L+ + G + V I L N L +Q L+
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 133 ------RAAFLRRVPLFFQLISENILLCFLLSTMHSTS---------KYITGTLSLQFRK 177
R+ + L I L L S + +L +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAE-LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 178 IVTKLIHTRY--------FENMAYYKISHVDGRITHPE-------------QRLASDV-- 214
++T TR+ + + H +T E Q L +V
Sbjct: 269 LLT----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 215 --PRFCSELSELVQDDLTAVTDGLLY--TWRL-----CSYA--SPK-----Y----VF-- 252
PR S ++E ++D L A D + +L S P + VF
Sbjct: 325 TNPRRLSIIAESIRDGL-ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 253 --WILAYVLG----------AGTMMRNFSPAFGKLMSKEQQLEGEYR------------- 287
I +L ++ + ++Q E
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKL---HKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 288 ---QLHSRLRTHAESIAFYGGENKEESHIQQ-KFKALTRHMRVVLHDHWWFGMIQDFL-L 342
LH + H + ++ ++ Q + + H++ + H FL
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 343 KYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402
++L I A N L L+++ I R
Sbjct: 501 RFLEQK-----IRHDSTAWNASGSILNT-----LQQLKFYKPYICD------NDPKYERL 544
Query: 403 LNRLSGYADRIHELMVISRELSI 425
+N + + +I E ++ S+ +
Sbjct: 545 VNAILDFLPKIEENLICSKYTDL 567
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 3e-14
Identities = 51/219 (23%), Positives = 82/219 (37%), Gaps = 24/219 (10%)
Query: 445 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
+ + G + EN++ + PG + + G GSGKS+L L G I
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQ 78
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLT--SDQEV-EPLTHGGMVEL 554
GV K +PQ+ + GT R L P SDQE+ + G+ +
Sbjct: 79 IDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEVGLRSV 137
Query: 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV--TTD 612
++ LD + G LS G +Q + +AR K K +LDE ++ + T
Sbjct: 138 IEQ--FPGKLDFVLVDG----GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY 191
Query: 613 MEERFCAKVRAMGTSC--ITISHRPALVAFHDVVLSLDG 649
R ++ C I R + D L ++
Sbjct: 192 QIIR--RTLKQAFADCTVILCEARIEAMLECDQFLVIEE 228
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 3e-14
Identities = 62/262 (23%), Positives = 106/262 (40%), Gaps = 27/262 (10%)
Query: 386 IISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYI 445
+ S S R + + + + +L+ E ++D G+ + I
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMFIDMENMFDLL--KEETEVKDLP----GAGPLRFQKGRI 54
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 505
EF V G +++++ V PG L + GP+G+GKS++ R+L + + SG I
Sbjct: 55 EFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRID 114
Query: 506 GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKN 557
G + L I VPQ T+ D + Y + EVE +
Sbjct: 115 GQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVE--------AAAQA 166
Query: 558 VDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+ + +P G+ +LS GE+QR+ +AR P +LDE TSA+ T E
Sbjct: 167 AGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNE 226
Query: 615 ERFCAKVRAM--GTSCITISHR 634
A + + + I ++HR
Sbjct: 227 RAIQASLAKVCANRTTIVVAHR 248
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 41/217 (18%), Positives = 74/217 (34%), Gaps = 44/217 (20%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSD 510
+ + L+ +V G L + GPNG+GKS+L + G+ G I G +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATK 70
Query: 511 LNKEIFYVPQRPYTAVGTLRDQLI----YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
L Y+ Q+ T + + T + + ++ + L+ L R
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN--------DVAGALALDDKLGR 122
Query: 567 YPPEKEINWGDELSLGEQQRLGMAR-------LFYHKPKFAILDECTSA------VTTDM 613
++LS GE QR+ +A + +LDE ++ D
Sbjct: 123 ST--------NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD- 173
Query: 614 EERFCAKVRAMGTSCITISHRPALVAFH-DVVLSLDG 649
+ + + G + + SH H L G
Sbjct: 174 --KILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKG 208
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 1111 SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP 1151
++ L+ E+ G+ L + GPNG+GKS++ + G+
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS 51
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 4e-13
Identities = 94/562 (16%), Positives = 194/562 (34%), Gaps = 85/562 (15%)
Query: 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHS-TSK 165
+++ + +V+ A + + L F F +++ IL + + S
Sbjct: 28 VVSTIALVIN-AAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASS 86
Query: 166 YITGTLSLQF-----RKIVTKLIH--TRYFENMAYYKISHVDGRITHPEQRLASDVPRFC 218
Y +S R++ +H R+F+ + RIT+ +++A
Sbjct: 87 YCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ---ESTGGLLSRITYDSEQVAGATS--- 140
Query: 219 SELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSK 278
L +V++ + + GLL L + S + ++ + S F K+
Sbjct: 141 RALVSIVREGASII--GLLT---LMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRN 195
Query: 279 EQQLEGEY-RQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMI 337
Q G L+ H + YGG+ E +++F ++ MR I
Sbjct: 196 MQTAMGHVTSSAEQMLKGHKV-VLSYGGQEVE----RKRFDKVSNSMRQQTMKLVSAQSI 250
Query: 338 QDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTL 396
D +++ + + ++ F A T G +F ++ L
Sbjct: 251 ADPVIQMIASLALFAVL---FLASVDSIRAELTPG-------------TFTVVFSAMFGL 294
Query: 397 SISSRRLNRLSGY-------ADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSG 449
+ L ++ + LM + ++ + NG ++
Sbjct: 295 MRPLKALTSVTSEFQRGMAACQTLFGLM--------DLETERDNGKYEAERVNGEVDVKD 346
Query: 450 VKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 508
V +++ + G + + G +GSGKS++ + + + SG I G
Sbjct: 347 VTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406
Query: 509 ------SDLNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVELLKNVD 559
++L + V Q + T+ + + Y + +++E + +
Sbjct: 407 VRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIE--------QAARQAH 458
Query: 560 LEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME-E 615
++ P + G+ LS G++QR+ +AR ILDE TSA+ D E E
Sbjct: 459 AMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSAL--DTESE 516
Query: 616 RF--CAKVRAM-GTSCITISHR 634
R A + + I+HR
Sbjct: 517 RAIQAALDELQKNKTVLVIAHR 538
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 6e-04
Identities = 64/372 (17%), Positives = 123/372 (33%), Gaps = 73/372 (19%)
Query: 842 LRKNSFYKVFNMSSKSIDADQ------RITHDLEKLTTDLSGLVTGMVKPSVDI------ 889
+R+ F +M + D + RIT+D E++ S + +V+ I
Sbjct: 100 MRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTL 159
Query: 890 -LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTF-RFMHERL 947
W +W++ +L +L + + V+ F ++ Q G + L
Sbjct: 160 MFWNSWQL-SL-------VLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQML 211
Query: 948 RAHAESVAFFGGGAREKAMIESRFRELLEHSL-LLLKKKWLFGILDDFVTKQLPHNVTWG 1006
+ H +++ ++ + RF ++ +K I D + Q+ ++
Sbjct: 212 KGHKVVLSY----GGQEVERK-RFDKVSNSMRQQTMKLVSAQSIADPVI--QMIASLALF 264
Query: 1007 LSLLYAMEHKGDRALVS--TQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGI- 1063
L A ++ + T G V S F + L E G+
Sbjct: 265 AVLFLA----SVDSIRAELTPGTFT-------VVFSAMFGLMRPLKALTSVTSEFQRGMA 313
Query: 1064 --NRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLA-RQLT 1120
+F L +L G E + + ++ A ++
Sbjct: 314 ACQTLFGLMDLETERDNGKYEAE----------RVNGEVDVKDVTFTYQGKEKPALSHVS 363
Query: 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 1180
F I GK++ + G +GSGKS++ + + V SGS+ +D R
Sbjct: 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC-----LDG----------HDVR 408
Query: 1181 PYTCLGTLRDQI 1192
Y L LR
Sbjct: 409 DYK-LTNLRRHF 419
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 5e-13
Identities = 96/538 (17%), Positives = 200/538 (37%), Gaps = 79/538 (14%)
Query: 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHS-TSK 165
++A + +++ A + + L F + + ++ +L + S S
Sbjct: 28 IVAGIALILN-AASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISS 86
Query: 166 YITGTLSLQ---------FRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPR 216
Y +S + F ++ + +F+ + RIT+ +++AS
Sbjct: 87 YCISWVSGKVVMTMRRRLFGHMMG--MPVAFFDK---QSTGTLLSRITYDSEQVASSSS- 140
Query: 217 FCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLM 276
L +V++ + + GL + Y S + ++ +R S F +
Sbjct: 141 --GALITVVREGASII--GLFI---MMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSIS 193
Query: 277 SKEQQLEGEY-RQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH-----MRVVLHD 330
Q G+ L+ H E + F GG+ E ++F ++ M++V
Sbjct: 194 KNMQNTMGQVTTSAEQMLKGHKEVLIF-GGQEVE----TKRFDKVSNKMRLQGMKMVSAS 248
Query: 331 HWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISL 389
+IQ + A++A+ ++ + A D+ T G + +I+L
Sbjct: 249 SISDPIIQ-LI-----ASLALAFVL--YAASFPSVMDSLTAG--TITVVFSS----MIAL 294
Query: 390 FQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSG 449
+ L +L+ + + R + ++ + + + G R +EF
Sbjct: 295 MRPLKSLTNVNAQFQRGMAACQTLFAIL--------DSEQEKDEGKRVIDRATGDLEFRN 346
Query: 450 VKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 508
V P V N+ LK+ G + + G +GSGKS++ ++ + + GHI G
Sbjct: 347 VTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 406
Query: 509 ------SDLNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVELLKNVD 559
+ L ++ V Q + T+ + + Y S +++E E +
Sbjct: 407 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIE--------EAARMAY 458
Query: 560 LEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+++ + G+ LS G++QR+ +AR ILDE TSA+ T+ E
Sbjct: 459 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 66/372 (17%), Positives = 130/372 (34%), Gaps = 73/372 (19%)
Query: 842 LRKNSFYKVFNMSSKSIDADQ------RITHDLEKLTTDLSGLVTGMVKPSVDI------ 889
+R+ F + M D RIT+D E++ + SG + +V+ I
Sbjct: 100 MRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIM 159
Query: 890 -LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTF-RFMHERL 947
+++W+ L+ IL + +R V+ F ++ Q G + L
Sbjct: 160 MFYYSWQ---LS-----IILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQML 211
Query: 948 RAHAESVAFFGGGAREKAMIESRFRELLEHSL-LLLKKKWLFGILDDFVTKQLPHNVTWG 1006
+ H E + F ++ + RF ++ +K I D + QL ++
Sbjct: 212 KGHKEVLIF----GGQEVETK-RFDKVSNKMRLQGMKMVSASSISDPII--QLIASLALA 264
Query: 1007 LSLLYAMEHKGDRALVS--TQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGI- 1063
L A +++ T G + V S + L + G+
Sbjct: 265 FVLYAA----SFPSVMDSLTAGTIT-------VVFSSMIALMRPLKSLTNVNAQFQRGMA 313
Query: 1064 --NRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLA-RQLT 1120
+F + + G I + F + P +++ A R +
Sbjct: 314 ACQTLFAILDSEQEKDEGKRVID----------RATGDLEFRNVTFTYPGREVPALRNIN 363
Query: 1121 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 1180
+I GK++ + G +GSGKS++ ++ + + G + +D R
Sbjct: 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL-----MDG----------HDLR 408
Query: 1181 PYTCLGTLRDQI 1192
YT L +LR+Q+
Sbjct: 409 EYT-LASLRNQV 419
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 69.4 bits (171), Expect = 6e-13
Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 34/210 (16%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+ V ++ +++ + +P S + GP+G GKS++F +L + +G I
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 505 PGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVELL 555
G + +I +V Q GT+R+ L Y +D+++ ++L
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLW--------QVL 113
Query: 556 KNVDLEYLLDRYPP-------EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
++ P E+ G ++S G++QRL +AR F PK +LDE T++
Sbjct: 114 DLAFARSFVENMPDQLNTEVGER----GVKISGGQRQRLAIARAFLRNPKILMLDEATAS 169
Query: 609 VTTDME-ERFC--AKVRAM-GTSCITISHR 634
+ D E E A M G + + I+HR
Sbjct: 170 L--DSESESMVQKALDSLMKGRTTLVIAHR 197
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 9e-13
Identities = 73/331 (22%), Positives = 125/331 (37%), Gaps = 59/331 (17%)
Query: 346 GATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNR 405
+AV+ G + + + +++ Y ++ SL +G + + R
Sbjct: 259 MGMIAVLWF------GGVLVRNNQMEIGSIMAYTNYLMQIMFSLMM-IGNILNF---IVR 308
Query: 406 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLV-ENL 464
S A R+ E V++ + +IE+ + + + F V+ V +
Sbjct: 309 ASASAKRVLE--VLNEKPAIEEAD----NALALPNVEGSVSFENVEFRYFENTDPVLSGV 362
Query: 465 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSDLNKEIFYV 518
V+PGS + + G GSGKS+L ++ L G + + DL I V
Sbjct: 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAV 422
Query: 519 PQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKN-------VDLEYLLDRYPP 569
PQ GT+++ L + +D E +VE K + L D
Sbjct: 423 PQETVLFSGTIKENLKWGREDATDDE--------IVEAAKIAQIHDFIISLPEGYDSRVE 474
Query: 570 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV--TTDMEERFCAKVRAM--- 624
N S G++QRL +AR KPK ILD+CTS+V T+ ++
Sbjct: 475 RGGRN----FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITE------KRILDGLKR 524
Query: 625 ---GTSCITISHRPALVAFHDVVLSLDGEGE 652
G + I+ + D +L L EG+
Sbjct: 525 YTKGCTTFIITQKIPTALLADKILVLH-EGK 554
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 26/206 (12%)
Query: 445 IEFSGVK---VVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
IEFS V L +++ + G+ + G GSGKS++ ++L + G
Sbjct: 18 IEFSDVNFSYPKQTNHRTL-KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGD 75
Query: 502 IAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVE 553
I G + + I VPQ T++ ++Y +D+EV +
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVI--------K 127
Query: 554 LLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
K+ L ++ P + + G+ +LS GE+QR+ +AR PK I DE TS++
Sbjct: 128 ATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLD 187
Query: 611 TDMEERFCAKVRAM--GTSCITISHR 634
+ E F V + + I I+HR
Sbjct: 188 SKTEYLFQKAVEDLRKNRTLIIIAHR 213
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 30/161 (18%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE------ 514
++ ++ ++E G + GPNG+GK++ R++ L SG + G ++ +E
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGK--NVVEEPHEVRK 88
Query: 515 -IFYVPQRP--YTAVGTLRDQL-----IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
I Y+P+ Y + + L Y S E+E + + L +
Sbjct: 89 LISYLPEEAGAYRNM-QGIEYLRFVAGFYAS-SSSEIEEMVE----RATEIAGLGEKIKD 142
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
S G ++L +AR P+ AILDE TS
Sbjct: 143 RV--------STYSKGMVRKLLIARALMVNPRLAILDEPTS 175
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 45/203 (22%)
Query: 422 ELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNG 481
+ +K+ Q N +R + + + FS + G +++++ K+E G L + G G
Sbjct: 18 FGELFEKAKQNNNNRKTSNGDDSLSFSNF---SLLGTPVLKDINFKIERGQLLAVAGSTG 74
Query: 482 SGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI------- 534
+GK+SL ++ G G I G I + Q + GT+++ +I
Sbjct: 75 AGKTSLLMMIMGELEPSEGKIKHSG-------RISFCSQNSWIMPGTIKENIIGVSYDEY 127
Query: 535 -YP-------LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586
Y L D + L E I LS G++ R
Sbjct: 128 RYRSVIKACQLEEDISK--FAEKDNIVL--------------GEGGIT----LSGGQRAR 167
Query: 587 LGMARLFYHKPKFAILDECTSAV 609
+ +AR Y +LD +
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYL 190
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 8e-06
Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 17/131 (12%)
Query: 1063 INRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFE 1122
+ + E + + +++ N DS+SFS + + + + F+
Sbjct: 7 MENVTAFWEEGFGELFEKAKQNNNNRKTSNG---DDSLSFSNF---SLLGTPVLKDINFK 60
Query: 1123 IVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPY 1182
I G+ L V G G+GK+S+ ++ G G + +G I + Q +
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK--------HSGR---ISFCSQNSW 109
Query: 1183 TCLGTLRDQII 1193
GT+++ II
Sbjct: 110 IMPGTIKENII 120
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 7e-11
Identities = 44/218 (20%), Positives = 79/218 (36%), Gaps = 44/218 (20%)
Query: 441 EANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500
E ++ + G ++ + + ++ G I G NG GKS+LF+ G+ SG
Sbjct: 4 EDYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63
Query: 501 HIAKPGVG--------SDLNKEIFYVPQRPYTAVGTLRDQLIYPL-------------TS 539
I L + I V Q P +QL
Sbjct: 64 RILFDNKPIDYSRKGIMKLRESIGIVFQDP-------DNQLFSASVYQDVSFGAVNMKLP 116
Query: 540 DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599
+ E+ LK +E+L D+ LS G+++R+ +A + +PK
Sbjct: 117 EDEIRKRVD----NALKRTGIEHLKDKPT--------HCLSFGQKKRVAIAGVLVMEPKV 164
Query: 600 AILDECTS----AVTTDMEERFCAKVRAMGTSCITISH 633
ILDE T+ +++ + + +G + I +H
Sbjct: 165 LILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 38/212 (17%)
Query: 445 IEFSGVKVV-TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I F ++ P V+++N+ L ++ G + I G +GSGKS+L +++ + +G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLT-----HGG 550
G + L +++ V Q ++ D + P S ++V H
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 551 MVELLKNVDLEYLLDRYPPEK------EINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+ EL E E G LS G++QR+ +AR + PK I DE
Sbjct: 128 ISEL--------------REGYNTIVGE--QGAGLSGGQRQRIAIARALVNNPKILIFDE 171
Query: 605 CTSAVTTDMEERFC-AKVRAM-GTSCITISHR 634
TSA+ + E + G + I I+HR
Sbjct: 172 ATSALDYESEHVIMRNMHKICKGRTVIIIAHR 203
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 39/162 (24%)
Query: 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521
+++ K+E G L + G G+GK+SL ++ G G I G I + Q
Sbjct: 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------RISFCSQF 77
Query: 522 PYTAVGTLRDQLIYPLTSDQE--------------VEPLTHGGMVELLKNVDLEYLLDRY 567
+ GT+++ +I+ ++ D+ + + L
Sbjct: 78 SWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL------------- 124
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
E I LS G++ R+ +AR Y +LD +
Sbjct: 125 -GEGGIT----LSGGQRARISLARAVYKDADLYLLDSPFGYL 161
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ + F+I G+ L V G G+GK+S+ ++ G G + +G I +
Sbjct: 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH--------SGR---ISF 73
Query: 1177 VPQRPYTCLGTLRDQIIY 1194
Q + GT+++ II+
Sbjct: 74 CSQFSWIMPGTIKENIIF 91
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 5e-10
Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 39/162 (24%)
Query: 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521
+T + G+ + + G G GKSSL L V GH+A G + YVPQ+
Sbjct: 22 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------SVAYVPQQ 74
Query: 522 PYTAVGTLRDQLIYPLTSDQE--------------VEPLTHGGMVELLKNVDLEYLLDRY 567
+ +LR+ +++ ++ +E L G E+
Sbjct: 75 AWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI------------- 121
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
EK +N LS G++QR+ +AR Y + D+ SAV
Sbjct: 122 -GEKGVN----LSGGQKQRVSLARAVYSNADIYLFDDPLSAV 158
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 1098 DSISFSKLDII-TPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS 1156
+SI+ S +TF I G + V G G GKSS+ L V G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1157 LTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIY 1194
+ GS + YVPQ+ + +LR+ I++
Sbjct: 62 VAI--------KGS---VAYVPQQAWIQNDSLRENILF 88
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 5e-10
Identities = 53/208 (25%), Positives = 80/208 (38%), Gaps = 44/208 (21%)
Query: 431 QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSL 487
+ + + I+ S + V G ++ N++L V G + G +G+GKS+L
Sbjct: 11 HHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTL 70
Query: 488 FRVLGGLWPLVSGHIAKPGV------GSDLNKE------IF----YVPQRPYTAVGTLRD 531
R + L G + G S+L K IF + R T+
Sbjct: 71 IRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR------TVFG 124
Query: 532 QLIYPL----TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587
+ PL T EV+ ELL V L D YP LS G++QR+
Sbjct: 125 NVALPLELDNTPKDEVKRRVT----ELLSLVGLGDKHDSYP--------SNLSGGQKQRV 172
Query: 588 GMARLFYHKPKFAILDECTSAV---TTD 612
+AR PK + D+ TSA+ TT
Sbjct: 173 AIARALASNPKVLLCDQATSALDPATTR 200
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 7e-10
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 39/183 (21%)
Query: 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
IEF GV+ + P G V ++ ++ G + + GP+GSGK+++ R++ GL G +
Sbjct: 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 504 KPGVGSDLNKEIFYVP--QRPYTAVG------------TLRDQLIYPL----TSDQEVEP 545
G K + +P +R VG T+ D + + L E++
Sbjct: 74 IGG------KRVTDLPPQKRN---VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA 124
Query: 546 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605
ELL+ + LE +R+P ELS G+QQR+ +AR +P+ + DE
Sbjct: 125 RVR----ELLRFMRLESYANRFP--------HELSGGQQQRVALARALAPRPQVLLFDEP 172
Query: 606 TSA 608
+A
Sbjct: 173 FAA 175
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 9e-10
Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 44/167 (26%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
N ++NL+LKVE G +I GP G+GK+ ++ G SG I G K++
Sbjct: 12 KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG------KDVT 65
Query: 517 YVP--QRPYTAVG------------TLRDQLIYPLT-----SDQEVEPLTHGGMVELLKN 557
+ + + ++ L + + + V + ++
Sbjct: 66 DLSPEKHD---IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVL--------DTARD 114
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+ +E+LLDR P LS GEQQR+ +AR PK +LDE
Sbjct: 115 LKIEHLLDRNP--------LTLSGGEQQRVALARALVTNPKILLLDE 153
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 3e-09
Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 35/170 (20%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
++ +++L ++PG L I G +G GK++L R L G SG I+ G + +
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGK--TIFSKNT 73
Query: 517 YVP--QRPYTAVG------------TLRDQLIYPL----TSDQEVEPLTHGGMVELLKNV 558
+P +R +G T+ + Y L + +L+
Sbjct: 74 NLPVRERR---LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE----AMLELT 126
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
+ L RYP ELS G+QQR +AR P+ +LDE SA
Sbjct: 127 GISELAGRYP--------HELSGGQQQRAALARALAPDPELILLDEPFSA 168
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 4e-09
Identities = 55/212 (25%), Positives = 81/212 (38%), Gaps = 41/212 (19%)
Query: 445 IEFSGVKVV----TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500
IE V + TP +EN++L + G LL+ G GSGKS+L +++ GL SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 501 HIAKPGVGSDLN---KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE--PLTHGGMVELL 555
+ G + I Q P DQ EV + +
Sbjct: 63 DVLYDGERKKGYEIRRNIGIAFQYP-------EDQFFAE-RVFDEVAFAVKNFYPDRDPV 114
Query: 556 KNV---------DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
V D + DR P LS GE++R+ +A + H+P ILDE
Sbjct: 115 PLVKKAMEFVGLDFDSFKDRVP--------FFLSGGEKRRVAIASVIVHEPDILILDEPL 166
Query: 607 SAVTTDMEER-----FCAKVRAMGTSCITISH 633
+ D E + K + +G + I ISH
Sbjct: 167 VGL--DREGKTDLLRIVEKWKTLGKTVILISH 196
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 5e-09
Identities = 62/231 (26%), Positives = 95/231 (41%), Gaps = 44/231 (19%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+ +K V +L + ++L V+ G + I G +GSGKS+L +LG L G +
Sbjct: 5 LRAENIKKVIRGYEIL-KGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63
Query: 505 PGVG-SDL---------NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGM-- 551
G N+++ +V Q + LI LT+ + V P+ G
Sbjct: 64 EGKEVDYTNEKELSLLRNRKLGFVFQF-H--------YLIPELTALENVIVPMLKMGKPK 114
Query: 552 -------VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
LL + L L R P ELS GEQQR+ +AR ++P DE
Sbjct: 115 KEAKERGEYLLSELGLGDKLSRKP--------YELSGGEQQRVAIARALANEPILLFADE 166
Query: 605 CT----SAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSL-DGE 650
T SA T + + F K+ GTS + ++H L L + DG+
Sbjct: 167 PTGNLDSANTKRVMDIF-LKINEGGTSIVMVTHERELAELTHRTLEMKDGK 216
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 33/178 (18%)
Query: 445 IEFSGVKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I V V G V+ ++N+ + +E G I GP+G+GK++ R++ GL +G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 504 KPGVGSDL--NKEIFYVP--QRPYTAV---------GTLRDQLIYPL----TSDQEVEPL 546
L + VP R V T + + +PL S +E+
Sbjct: 64 ---FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR 120
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
E+ K +D+ ++L+ +P ELS +QQR+ +AR P +LDE
Sbjct: 121 VE----EVAKILDIHHVLNHFP--------RELSGAQQQRVALARALVKDPSLLLLDE 166
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 30/162 (18%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-----GSDLNK---E 514
+ + + G +++ GP+GSGKS+ R L L G I G+ ++LNK E
Sbjct: 42 GINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101
Query: 515 IFYVPQR----PYTAVGTLRDQLIYPL----TSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
+ V QR P+ V L + + P+ ++ E M ELL V L+
Sbjct: 102 VGMVFQRFNLFPHMTV--LNNITLAPMKVRKWPREKAEAK---AM-ELLDKVGLKDKAHA 155
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
YP D LS G+ QR+ +AR +PK + DE TSA
Sbjct: 156 YP--------DSLSGGQAQRVAIARALAMEPKIMLFDEPTSA 189
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 4e-08
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 32/160 (20%)
Query: 463 NLTLKVEPGSNLL-ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP-- 519
L + E G + + GP G+GKS ++ G+ G + G +I +P
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG------ADITPLPPE 68
Query: 520 QRPYTAV---------GTLRDQLIYPL--TSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568
+R V ++ + Y L E + E+ + + + +LLDR P
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVR----EMAEKLGIAHLLDRKP 124
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
LS GE+QR+ +AR +P+ +LDE SA
Sbjct: 125 --------ARLSGGERQRVALARALVIQPRLLLLDEPLSA 156
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 4e-08
Identities = 73/346 (21%), Positives = 130/346 (37%), Gaps = 50/346 (14%)
Query: 310 ESHIQQKFKAL-TRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDT 367
E + + F T + L W F + I++I L +
Sbjct: 219 EDNEAKNFDKKNTNFLTRALKHTRWNAYS--FAAINTVTDIGPIIVI--GVGAYLAISGS 274
Query: 368 STLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIED 427
T+G + + + Y + LF L L S L + DR+ +L+ + I++
Sbjct: 275 ITVG--TLAAFVGY----LELLFGPLRRLVASFTTLTQSFASMDRVFQLI--DEDYDIKN 326
Query: 428 KS-----PQRNGSRNYFSEANYIEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNG 481
+ G I+ V + +++ L +E G + G +G
Sbjct: 327 GVGAQPIEIKQGR---------IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSG 377
Query: 482 SGKSSLFRVLGGLWPLVSGHIAKPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIY 535
GKS+L ++ + + SG I G L +I V Q T+++ ++
Sbjct: 378 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL 437
Query: 536 --PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPP--EKEIN-WGDELSLGEQQRLGMA 590
P +D+EV E K + + P + E+ G +LS G++QRL +A
Sbjct: 438 GRPTATDEEVV--------EAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 489
Query: 591 RLFYHKPKFAILDECTSAVTTDMEER-FCAKVRAM-GTSCITISHR 634
R+F + P ILDE TSA+ + E A + + ++HR
Sbjct: 490 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHR 535
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 7e-08
Identities = 50/222 (22%), Positives = 84/222 (37%), Gaps = 54/222 (24%)
Query: 445 IEFSGVKVVTPT-GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
++F V P NV V + LT + PG + GPNGSGKS++ +L L+ G +
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 503 AKPGVG-SDLN-----KEIFYVPQRPYTAVGTLRDQLIYPLT---SDQEVE--------- 544
G + ++ V Q P + R+ + Y LT + +E+
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAH 136
Query: 545 ----PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600
G D E G++LS G++Q + +AR KP+
Sbjct: 137 DFISGFPQG--------------YDTEVGET----GNQLSGGQRQAVALARALIRKPRLL 178
Query: 601 ILDECTSAVTTDMEERFCAKV-----RAM---GTSCITISHR 634
ILD TSA+ + +V + + + I+ +
Sbjct: 179 ILDNATSALDAGNQ----LRVQRLLYESPEWASRTVLLITQQ 216
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 8e-08
Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 35/198 (17%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SD 510
+++++T ++PG + + GP GSGK+++ +L + + G I G+ S
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSS 426
Query: 511 LNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLK--NVD--LEYLL 564
L I V Q T+++ L Y P +D+E+ E K + D +++L
Sbjct: 427 LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEI--------KEAAKLTHSDHFIKHLP 478
Query: 565 DRYPPEKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-R 622
+ Y E + G++LS G++Q L + R F PK ILDE TS V T E +
Sbjct: 479 EGY--ETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTE----KSIQA 532
Query: 623 AMG------TSCITISHR 634
AM TS I I+HR
Sbjct: 533 AMWKLMEGKTSII-IAHR 549
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 8e-08
Identities = 44/208 (21%), Positives = 76/208 (36%), Gaps = 54/208 (25%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
++ +++ V G LI GPNGSGKS+L V+ G G + K+I +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN------KDI--TNK 74
Query: 521 RPY--TAVGTLR-----------------------------DQLIYPLTSDQEVEPLTHG 549
P G +R + L Y +E E +
Sbjct: 75 EPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKA 134
Query: 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE----C 605
++L+ + L +L DR ELS G+ + + + R PK ++DE
Sbjct: 135 --FKILEFLKLSHLYDRK--------AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 606 TSAVTTDMEERFCAKVRAMGTSCITISH 633
+ D+ +++A G + + I H
Sbjct: 185 APGLAHDIFN-HVLELKAKGITFLIIEH 211
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 6e-07
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 47/237 (19%)
Query: 445 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
++ V G ++ N+ L ++ G + I GP+GSGKS++ ++G L G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 502 IAKPGVG-SDL---------NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PL---T 547
+ + +DL +I +V Q+ + LI LT+ + VE PL
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQ-F--------NLIPLLTALENVELPLIFKY 112
Query: 548 HGGM---------VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598
G M +E LK +LE + P ++LS G+QQR+ +AR + P
Sbjct: 113 RGAMSGEERRKRALECLKMAELEERFANHKP-------NQLSGGQQQRVAIARALANNPP 165
Query: 599 FAILDECT----SAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHD-VVLSLDGE 650
+ D+ T S + + G + + ++H + F + ++ DGE
Sbjct: 166 IILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE 222
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 33/165 (20%)
Query: 457 GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE- 514
G + + + LKV G + + G NG+GK++ + GL G I G D+ +
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF--NGQDITNKP 74
Query: 515 --------IFYVPQ--RPYTAVGTLRDQLI---YPLTSDQEVEPLTHGGMVELLKNVDLE 561
I VP+ R + + T+ + L+ Y + ++ DLE
Sbjct: 75 AHVINRMGIALVPEGRRIFPEL-TVYENLMMGAYNRKDKEGIKR-------------DLE 120
Query: 562 YLLDRYP--PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
++ +P E+ G LS GEQQ L + R +PK ++DE
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 46/234 (19%), Positives = 73/234 (31%), Gaps = 24/234 (10%)
Query: 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT----GNV 459
++ Y L K N + E + + +
Sbjct: 390 THITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI 449
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP 519
L+ L+++ I GPNG GKS+L R + V G + YV
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG--QVDGFPTQEEC------RTVYVE 501
Query: 520 QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDEL 579
GT D + + V E +K+ +E+ I L
Sbjct: 502 HDI---DGTHSDTSVLDFVFESGVGTK------EAIKDKLIEFGFTDEMIAMPI---SAL 549
Query: 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISH 633
S G + +L +AR +LDE T+ + T + G + ITISH
Sbjct: 550 SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 518
+ ++ + S + + GPNG+GKS+L VL G SG + + I Y+
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT---HENC--RIAYI 741
Query: 519 PQ 520
Q
Sbjct: 742 KQ 743
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 8e-05
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 33/173 (19%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG--VGSDLNKEIF 516
VL + ++L+ G + I G +GSGKS+ R + L G I G + +K+
Sbjct: 21 VL-KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 79
Query: 517 YVPQRPYTAVGTLRDQL--------IYP-LTSDQEV--EPLTHGGM---------VELLK 556
+ LR +L ++ +T + V P+ G+ ++ L
Sbjct: 80 LKVADK-NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLA 138
Query: 557 NVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
V + E +YP LS G+QQR+ +AR +P + DE TSA
Sbjct: 139 KVGIDERAQGKYP--------VHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 183
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 28/161 (17%)
Query: 457 GNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VGSDL--- 511
GN + N+ LK++ G + + GP+GSGKS+L + G++ SG I ++L
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK 73
Query: 512 NKEIFYVPQR----PYTAVGTLRDQLIYPL----TSDQEVEPLTHGGMVELLKNVDLEYL 563
++ + V Q P+ V + +PL +E++ E+ K + ++ L
Sbjct: 74 DRNVGLVFQNWALYPHMTV---YKNIAFPLELRKAPREEIDKKVR----EVAKMLHIDKL 126
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
L+RYP +LS G+QQR+ +AR +P+ +LDE
Sbjct: 127 LNRYP--------WQLSGGQQQRVAIARALVKEPEVLLLDE 159
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1374 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 7e-31 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 5e-13 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-30 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-12 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-29 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-13 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 7e-28 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-11 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-27 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-09 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 8e-27 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-12 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-24 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-12 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 8e-07 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-22 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-06 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-21 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-06 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-21 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 9e-08 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-20 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-06 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 8e-20 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-07 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-05 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-19 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-07 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-19 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 9e-05 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-18 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-07 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-18 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 7e-04 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-17 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-04 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 7e-13 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-05 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-04 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.003 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 120 bits (303), Expect = 7e-31
Identities = 49/219 (22%), Positives = 94/219 (42%), Gaps = 22/219 (10%)
Query: 445 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I+ V + +++ L +E G + G +G GKS+L ++ + + SG I
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 504 KPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT--SDQEVEPLTHGGMVELL 555
G L +I V Q T+++ ++ +D+EV E
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVV--------EAA 128
Query: 556 KNVDLEYLLDRYPP--EKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612
K + + P + E+ G +LS G++QRL +AR+F + P ILDE TSA+ +
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 613 MEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
E + + + + ++HR + + D ++ ++
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIEN 227
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 68.3 bits (167), Expect = 5e-13
Identities = 45/257 (17%), Positives = 83/257 (32%), Gaps = 70/257 (27%)
Query: 1097 QDSISFSKLDIITPSQKLLA-RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSG 1155
Q I + + + + I G+++ G +G GKS++ ++ + V SG
Sbjct: 14 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 73
Query: 1156 SLTKPSQHIDEEAGSGCG--IFYVPQRPYTCLGTLRDQIIY--PLSREEAELRALKLHGK 1211
+ +I + I V Q T+++ I+ P + +E + A K+
Sbjct: 74 QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKM--- 130
Query: 1212 GEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMVSHL 1270
+ G+D + + LS G++QRL +
Sbjct: 131 ---------------------ANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI---- 165
Query: 1271 VLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTN----ATSVDV 1326
AR+F + P ILDE T+ + +
Sbjct: 166 --------------------------------ARIFLNNPPILILDEATSALDLESESII 193
Query: 1327 EEQLYRLAKDMGITFVT 1343
+E L L+KD V
Sbjct: 194 QEALDVLSKDRTTLIVA 210
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 118 bits (298), Expect = 5e-30
Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 17/227 (7%)
Query: 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGK 484
+ +K Q NG R + S+ N + FS + GN +++N+ L +E G L ITG GSGK
Sbjct: 19 LLEKVQQSNGDRKHSSDENNVSFSHL---CLVGNPVLKNINLNIEKGEMLAITGSTGSGK 75
Query: 485 SSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 544
+SL ++ G G I + + + Q + GT+++ +I+ ++ D+
Sbjct: 76 TSLLMLILGELEASEGIIK-------HSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRY 128
Query: 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+ E + LS G++ R+ +AR Y +LD
Sbjct: 129 KSVVKACQLQQDITKFAEQDNTVLGEGGVT----LSGGQRARISLARAVYKDADLYLLDS 184
Query: 605 CTSAVTTDMEERF---CAKVRAMGTSCITISHRPALVAFHDVVLSLD 648
+ EE+ C + I ++ + + D +L L
Sbjct: 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILH 231
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.9 bits (163), Expect = 2e-12
Identities = 43/288 (14%), Positives = 91/288 (31%), Gaps = 85/288 (29%)
Query: 1068 ELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGK 1127
ELL+ Q + + SS ++++SFS L + + + I G+
Sbjct: 15 GFGELLEKVQQSNGDRKHSSD--------ENNVSFSHL---CLVGNPVLKNINLNIEKGE 63
Query: 1128 SLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGT 1187
L +TG GSGK+S+ ++ G G + + + Q + GT
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEASEGIIK-----HSGR------VSFCSQFSWIMPGT 112
Query: 1188 LRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWD 1247
+++ II+ +S +E ++ +++ +L + + +
Sbjct: 113 IKENIIFGVSYDEYRYKS-----------------------VVKACQLQQDITKFAEQDN 149
Query: 1248 ANLNWEDI-LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLF 1306
L + LS G++ R+ + R
Sbjct: 150 TVLGEGGVTLSGGQRARISLA------------------------------------RAV 173
Query: 1307 FHKPKFGILDECTNATSVDVEEQLYRLAKDM---GITFVTSSQRPALI 1351
+ +LD V EEQ++ T + + + +
Sbjct: 174 YKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL 221
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 114 bits (288), Expect = 5e-29
Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 17/216 (7%)
Query: 445 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP------L 497
+EF V P V N+ LK+ G + + G +GSGKS++ ++ + L
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 498 VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557
+ GH + + L ++ V Q + T+ + + Y E + + E +
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYA-----RTEEYSREQIEEAARM 128
Query: 558 VDLEYLLDRYP--PEKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+++ + I G LS G++QR+ +AR ILDE TSA+ T+ E
Sbjct: 129 AYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 188
Query: 615 ERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
A + + + + I+HR + + D ++ ++
Sbjct: 189 RAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVE 224
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 67.9 bits (166), Expect = 6e-13
Identities = 39/252 (15%), Positives = 82/252 (32%), Gaps = 65/252 (25%)
Query: 1100 ISFSKLDIITPSQKLLA-RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
+ F + P +++ A R + +I GK++ + G +GSGKS++ ++ + + G +
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 1159 KPSQHIDEEAGSGCG--IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLV 1216
+ E + + V Q + T+ + I Y + E + + +
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEE--------- 124
Query: 1217 DTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMVSHLVLIQL 1275
+ + + G D + + LS G++QR+ +
Sbjct: 125 ------------AARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAI--------- 163
Query: 1276 CSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNA----TSVDVEEQLY 1331
AR ILDE T+A + ++ L
Sbjct: 164 ---------------------------ARALLRDSPILILDEATSALDTESERAIQAALD 196
Query: 1332 RLAKDMGITFVT 1343
L K+ +
Sbjct: 197 ELQKNRTSLVIA 208
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 111 bits (279), Expect = 7e-28
Identities = 49/215 (22%), Positives = 96/215 (44%), Gaps = 16/215 (7%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+ V ++ +++ + +P S + GP+G GKS++F +L + +G I
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 505 PGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558
G + +I +V Q GT+R+ L Y L D E L +L
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQ-----VLDLA 116
Query: 559 DLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
++ P + G+ ++S G++QRL +AR F PK +LDE T+++ ++ E
Sbjct: 117 FARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176
Query: 616 RFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
+ ++ G + + I+HR + + D + ++
Sbjct: 177 MVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIE 211
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 63.3 bits (154), Expect = 2e-11
Identities = 51/270 (18%), Positives = 92/270 (34%), Gaps = 62/270 (22%)
Query: 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 1159
+S +D + + R ++FE P + GP+G GKS++F +L + +G +T
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 1160 PSQHIDEEAGS--GCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVD 1217
Q ID + I +V Q GT+R+ + Y L +
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYT---------------- 105
Query: 1218 TTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMVSHLVLIQLC 1276
D L +L+ +E + + + +S G++QRL +
Sbjct: 106 -----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAI---------- 150
Query: 1277 SINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD 1336
AR F PK +LDE T + + E + +
Sbjct: 151 --------------------------ARAFLRNPKILMLDEATASLDSESESMVQKALDS 184
Query: 1337 M--GITFVTSSQRPALIPFHSLELRLIDGE 1364
+ G T + + R + I + G+
Sbjct: 185 LMKGRTTLVIAHRLSTIVDADKIYFIEKGQ 214
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 110 bits (277), Expect = 1e-27
Identities = 44/214 (20%), Positives = 89/214 (41%), Gaps = 12/214 (5%)
Query: 445 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I F ++ + ++ +N+ L ++ G + I G +GSGKS+L +++ + +G +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 504 KPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557
G + L +++ V Q ++ D + + + +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 617
+ L G LS G++QR+ +AR + PK I DE TSA+ + E
Sbjct: 122 IS---ELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 618 CAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
+ + G + I I+HR + V D ++ ++
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEK 212
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 56.1 bits (135), Expect = 5e-09
Identities = 37/248 (14%), Positives = 76/248 (30%), Gaps = 65/248 (26%)
Query: 1110 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDE 1166
P ++ + I G+ + + G +GSGKS++ ++++ + +G + D
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 72
Query: 1167 EAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYL 1226
+ V Q ++ D I + + K D
Sbjct: 73 NWLRRQ-VGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAGAHD--------- 120
Query: 1227 KTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMVSHLVLIQLCSINKISELD 1285
+ G++ + + LS G++QR+ +
Sbjct: 121 -----------FISELREGYNTIVGEQGAGLSGGQRQRIAI------------------- 150
Query: 1286 WLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDM--GITFVT 1343
AR + PK I DE T+A + E + R + G T +
Sbjct: 151 -----------------ARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVII 193
Query: 1344 SSQRPALI 1351
+ R + +
Sbjct: 194 IAHRLSTV 201
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (272), Expect = 8e-27
Identities = 52/220 (23%), Positives = 92/220 (41%), Gaps = 20/220 (9%)
Query: 445 IEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
++F V P ++++ LT + PG + GPNGSGKS++ +L L+ G +
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 503 AKPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556
G L++++ V Q P +L++ + Y LT +E +
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTME-----EITAAAV 126
Query: 557 NVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAV---- 609
+ P + + +LS G++Q + +AR KP ILD+ TSA+
Sbjct: 127 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 186
Query: 610 TTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDG 649
+E+ S + I+ +LV D +L L+G
Sbjct: 187 QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEG 226
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (164), Expect = 1e-12
Identities = 50/265 (18%), Positives = 91/265 (34%), Gaps = 68/265 (25%)
Query: 1097 QDSISFSKLDIITPSQK--LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVS 1154
+ + F + P++ L+ + LTF + PG+ + GPNGSGKS+V +L+ L+
Sbjct: 9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 68
Query: 1155 GSLT---KPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGK 1211
G L KP + + V Q P +L++ I Y L+++
Sbjct: 69 GQLLLDGKPLPQYEHRYLHRQ-VAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITA---- 123
Query: 1212 GEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMVSHL 1270
+ G+D ++ LS G++Q + +
Sbjct: 124 -----------------AAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALA--- 163
Query: 1271 VLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNA----TSVDV 1326
R KP ILD+ T+A + + V
Sbjct: 164 ---------------------------------RALIRKPCVLILDDATSALDANSQLQV 190
Query: 1327 EEQLYRLAKDMGITFVTSSQRPALI 1351
E+ LY + + + +Q +L+
Sbjct: 191 EQLLYESPERYSRSVLLITQHLSLV 215
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 99.9 bits (249), Expect = 7e-24
Identities = 41/213 (19%), Positives = 80/213 (37%), Gaps = 36/213 (16%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
++ + V L L ++ G L++ GP+G GK++ R++ GL G I
Sbjct: 7 VKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 65
Query: 505 PGV----GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGM-------- 551
++ I V Q + +T + + PL
Sbjct: 66 GDRDVTYLPPKDRNISMVFQSY---------AVWPHMTVYENIAFPLKIKKFPKDEIDKR 116
Query: 552 -VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
+ + +E LL+RYP +LS G++QR+ +AR +P ++DE S +
Sbjct: 117 VRWAAELLQIEELLNRYP--------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 168
Query: 611 TDMEERFCAKVRAM----GTSCITISHRPALVA 639
+ A+++ + + I ++H
Sbjct: 169 AKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAM 201
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 64.8 bits (158), Expect = 7e-12
Identities = 42/246 (17%), Positives = 81/246 (32%), Gaps = 79/246 (32%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+L I G+ L++ GP+G GK++ R++ GL G + + + I
Sbjct: 23 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 82
Query: 1177 VPQRPYTCLG-TLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDSYLKTIL 1230
V Q T+ + I +PL ++E + R +L+ +L+ Y
Sbjct: 83 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA----ELLQIEELLNRYPAQ-- 136
Query: 1231 EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYC 1290
LS G++QR+ +
Sbjct: 137 -------------------------LSGGQRQRVAV------------------------ 147
Query: 1291 CLTLFFPPFSYKARLFFHKPKFGILDECTNA----TSVDVEEQLYRLAKDMGIT--FVTS 1344
AR +P ++DE + V + ++ +L + + +T +VT
Sbjct: 148 ------------ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 195
Query: 1345 SQRPAL 1350
Q A+
Sbjct: 196 DQVEAM 201
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 99.2 bits (247), Expect = 1e-23
Identities = 57/229 (24%), Positives = 89/229 (38%), Gaps = 35/229 (15%)
Query: 445 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
I+ S + V G ++ N++L V G + G +G+GKS+L R + L G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 502 I---------AKPGVGSDLNKEIFYVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLT 547
+ + ++I + Q T G + L T EV+
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
ELL V L D YP LS G++QR+ +AR PK + DE TS
Sbjct: 122 T----ELLSLVGLGDKHDSYP--------SNLSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 608 AV----TTDMEERFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGE 650
A+ T + E R +G + + I+H +V V + +GE
Sbjct: 170 ALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE 218
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 49.5 bits (118), Expect = 8e-07
Identities = 40/242 (16%), Positives = 74/242 (30%), Gaps = 84/242 (34%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS-------LTKPSQHIDEEAG 1169
++ + G+ V G +G+GKS++ R + L GS LT S+ +A
Sbjct: 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81
Query: 1170 SGCGIFYVPQRPYTCLGTLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDS 1224
G+ + + T+ + PL ++E + R +L
Sbjct: 82 RQIGMIFQHFNLLSS-RTVFGNVALPLELDNTPKDEVKRRVTEL---------------- 124
Query: 1225 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISEL 1284
L V L + + LS G++QR+ +
Sbjct: 125 -----LSLVGLGDKHDS----------YPSNLSGGQKQRVAI------------------ 151
Query: 1285 DWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL----YRLAKDMGIT 1340
AR PK + DE T+A + + + +G+T
Sbjct: 152 ------------------ARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLT 193
Query: 1341 FV 1342
+
Sbjct: 194 IL 195
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 95.7 bits (238), Expect = 2e-22
Identities = 47/231 (20%), Positives = 80/231 (34%), Gaps = 52/231 (22%)
Query: 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
N + + VL + ++L+ G + I G +GSGKS+ R + L G I
Sbjct: 1 NKLHVIDLHKRYGGHEVL-KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 503 -------------------AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV 543
A L + V Q L +T + V
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF---------NLWSHMTVLENV 110
Query: 544 --EPLTHGGM---------VELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591
P+ G+ ++ L V + E +YP LS G+QQR+ +AR
Sbjct: 111 MEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP--------VHLSGGQQQRVSIAR 162
Query: 592 LFYHKPKFAILDECTSAVTTDMEE---RFCAKVRAMGTSCITISHRPALVA 639
+P + DE TSA+ ++ R ++ G + + ++H
Sbjct: 163 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFAR 213
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 49.1 bits (117), Expect = 1e-06
Identities = 42/262 (16%), Positives = 80/262 (30%), Gaps = 95/262 (36%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC---- 1172
+ ++ + G + + G +GSGKS+ R + L G++ Q+I+
Sbjct: 19 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78
Query: 1173 -----------GIFYVPQRP--YTCLGTLRDQIIYP------LSREEAELRALKLHGKGE 1213
+ V Q ++ + T+ + ++ LS+ +A RALK
Sbjct: 79 ADKNQLRLLRTRLTMVFQHFNLWSHM-TVLENVMEAPIQVLGLSKHDARERALKY----- 132
Query: 1214 KLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLI 1273
L V + + + LS G+QQR+ +
Sbjct: 133 ----------------LAKVGIDERAQGKYPVH---------LSGGQQQRVSI------- 160
Query: 1274 QLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL--- 1330
AR +P + DE T+A ++ ++
Sbjct: 161 -----------------------------ARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 1331 YRLAKDMGIT--FVTSSQRPAL 1350
+ + G T VT A
Sbjct: 192 MQQLAEEGKTMVVVTHEMGFAR 213
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 92.1 bits (228), Expect = 4e-21
Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 25/223 (11%)
Query: 445 IEFSGVKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I V V G V+ ++N+ + +E G I GP+G+GK++ R++ GL +G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 504 KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS-DQEVEPLTHGGM---------VE 553
N ++ P+ + L LT+ + PLT+ M E
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 554 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV---- 609
+ K +D+ ++L+ +P ELS +QQR+ +AR P +LDE S +
Sbjct: 124 VAKILDIHHVLNHFP--------RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 610 TTDMEERFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGE 650
+G + + +SH PA + V + + G+
Sbjct: 176 RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGK 218
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 47.8 bits (113), Expect = 3e-06
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 31/174 (17%)
Query: 1100 ISFSKLDIITPSQKLLA-RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
I + + K++A + I G+ + GP+G+GK++ R++ GL +G L
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 1159 KPSQHIDEEAGSGC-----GIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGE 1213
+ + I V Q L+ E L +
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALY---------PNLTAFENIAFPLTNMKMSK 114
Query: 1214 KLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMV 1267
+ + R+ + + ++ N ++ LS +QQR+ +
Sbjct: 115 EEIRK---------------RVEEVAKILDIHHVLN-HFPRELSGAQQQRVALA 152
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 91.4 bits (227), Expect = 4e-21
Identities = 47/231 (20%), Positives = 91/231 (39%), Gaps = 40/231 (17%)
Query: 445 IEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
I+ V G ++N+ L ++ G + I GP+GSGKS++ ++G L G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 502 IAKPGVG-SDLNKE---------IFYVPQRPY-TAVGTLRDQLIYPLT---------SDQ 541
+ + +DL+ + I +V Q+ + T + + PL ++
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 542 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
L M EL E + P ++LS G+QQR+ +AR + P +
Sbjct: 122 RKRALECLKMAEL-----EERFANHKP--------NQLSGGQQQRVAIARALANNPPIIL 168
Query: 602 LDECTSAV----TTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648
D+ T A+ + + G + + ++H + F + ++ L
Sbjct: 169 ADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLK 219
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 52.1 bits (125), Expect = 9e-08
Identities = 45/245 (18%), Positives = 78/245 (31%), Gaps = 85/245 (34%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEE---AGS 1170
+ + I G+ + + GP+GSGKS++ ++ L G + + +D++
Sbjct: 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81
Query: 1171 GCGIFYVPQRPY-TCLGTLRDQIIYPL--------SREEAELRALKLHGKGEKLVDTTNI 1221
I +V Q+ L T + + PL S EE RAL+ E
Sbjct: 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE-------- 133
Query: 1222 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKI 1281
+ E + LS G+QQR+ +
Sbjct: 134 -------LEERFANHKPNQ---------------LSGGQQQRVAI--------------- 156
Query: 1282 SELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNA----TSVDVEEQLYRLAKDM 1337
AR + P + D+ T A T + + L +L ++
Sbjct: 157 ---------------------ARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED 195
Query: 1338 GITFV 1342
G T V
Sbjct: 196 GKTVV 200
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 88.1 bits (218), Expect = 6e-20
Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 22/185 (11%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DL 511
+++ ++ ++E G + GPNG+GK++ R++ L SG + G ++
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 73
Query: 512 NKEIFYVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
K I Y+P+ + LR + +S E+E + + L +
Sbjct: 74 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE----RATEIAGLGEKIKD 129
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626
S G ++L +AR P+ AILDE TS + ++
Sbjct: 130 RV--------STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 181
Query: 627 SCITI 631
+TI
Sbjct: 182 EGLTI 186
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 48.8 bits (116), Expect = 1e-06
Identities = 37/240 (15%), Positives = 74/240 (30%), Gaps = 67/240 (27%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT-KPSQHIDEEAGSGCGIF 1175
+ ++FEI G+ + GPNG+GK++ R++ L SG +T ++E I
Sbjct: 19 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 78
Query: 1176 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 1235
Y+P+ + E + ++ ++ E L
Sbjct: 79 YLPEEAGAYRN---------MQGIEYLRFVAGFYASSSS------EIEEMVERATEIAGL 123
Query: 1236 SYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLF 1295
++ S G ++L +
Sbjct: 124 GEKIKD----------RVSTYSKGMVRKLLI----------------------------- 144
Query: 1296 FPPFSYKARLFFHKPKFGILDECTNATSV----DVEEQLYRLAKD-MGITFVTSSQRPAL 1350
AR P+ ILDE T+ V +V + L + +++ + I + +
Sbjct: 145 -------ARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVE 197
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 88.5 bits (219), Expect = 8e-20
Identities = 43/207 (20%), Positives = 74/207 (35%), Gaps = 32/207 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD------ 510
++ +++ V G LI GPNGSGKS+L V+ G G +
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 75
Query: 511 -LNKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGG-------------MVELL 555
+ I Q P T+ + L+ E + ++L
Sbjct: 76 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 135
Query: 556 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV---TTD 612
+ + L +L DR ELS G+ + + + R PK ++DE + V
Sbjct: 136 EFLKLSHLYDRKA--------GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 187
Query: 613 MEERFCAKVRAMGTSCITISHRPALVA 639
+++A G + + I HR +V
Sbjct: 188 DIFNHVLELKAKGITFLIIEHRLDIVL 214
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 51.9 bits (124), Expect = 1e-07
Identities = 36/244 (14%), Positives = 72/244 (29%), Gaps = 60/244 (24%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCG 1173
++ + G L+ GPNGSGKS++ V+ G G + K + + G
Sbjct: 21 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80
Query: 1174 IFYVPQRPYTCLG-TLRDQIIYP-LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 1231
I Q P T+ + ++ + E+ L +L K +
Sbjct: 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE----------- 129
Query: 1232 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCC 1291
+ +LE ++ + + LS G+ + + +
Sbjct: 130 --KAFKILEFLKLSHLYDRKAGE-LSGGQMKLVEI------------------------- 161
Query: 1292 LTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL-----AKDMGITFVTSSQ 1346
R PK ++DE + + ++ AK + +
Sbjct: 162 -----------GRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 210
Query: 1347 RPAL 1350
L
Sbjct: 211 DIVL 214
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 87.3 bits (216), Expect = 2e-19
Identities = 45/207 (21%), Positives = 82/207 (39%), Gaps = 25/207 (12%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
V ++L+V+ G +++ GP+G GK++ R++ GL G I ++ +VP
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 521 RPYTAVGTLRDQLIYP--LTSDQEVEPLTHGGM---------VELLKNVDLEYLLDRYPP 569
+ + +YP D PL + E+ + + L LL+R P
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP- 137
Query: 570 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS----AVTTDMEERFCAKVRAMG 625
ELS G++QR+ + R KP+ ++DE S + M R +G
Sbjct: 138 -------RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 626 TSCITISHRPALVAF--HDVVLSLDGE 650
+ I ++H + + G
Sbjct: 191 VTTIYVTHDQVEAMTMGDRIAVMNRGV 217
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 45.7 bits (108), Expect = 1e-05
Identities = 45/240 (18%), Positives = 90/240 (37%), Gaps = 61/240 (25%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
R+++ E+ G+ +++ GP+G GK++ R++ GL G + + + A GIF
Sbjct: 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV---ADPEKGIFV 76
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 1236
P+ + + ++ + LKL + + D ++ + E + L+
Sbjct: 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEI------DQRVREVAELLGLT 130
Query: 1237 YLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFF 1296
LL R LS G++QR+ +
Sbjct: 131 ELLNR----------KPRELSGGQRQRVAL------------------------------ 150
Query: 1297 PPFSYKARLFFHKPKFGILDECTN----ATSVDVEEQLYRLAKDMGIT--FVTSSQRPAL 1350
R KP+ ++DE + V + +L +L + +G+T +VT Q A+
Sbjct: 151 ------GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAM 204
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 85.4 bits (211), Expect = 3e-19
Identities = 35/195 (17%), Positives = 79/195 (40%), Gaps = 19/195 (9%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+E + V ++E +T+ +E G+ + GPNG GK++L + + + G I
Sbjct: 3 LEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 60
Query: 505 PGV-GSDLNKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 562
GV + + +IF++P+ ++ D L + + +++ L++V++
Sbjct: 61 NGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG--VKVNKNEIMDALESVEVLD 118
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEERFC 618
L + LS G +R+ +A + +LD+ A+ + +
Sbjct: 119 LKKKLGE---------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL 169
Query: 619 AKVRAMGTSCITISH 633
++ G I+
Sbjct: 170 EILKEKGIVIISSRE 184
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 51.8 bits (124), Expect = 1e-07
Identities = 34/234 (14%), Positives = 67/234 (28%), Gaps = 71/234 (30%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
++T I G + GPNG GK+++ + + + G + I + G IF+
Sbjct: 18 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKG---KIFF 74
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 1236
+P+ +S E+ L+G + + L
Sbjct: 75 LPEEIIVP---------RKISVEDYLKAVASLYGVKVNKNEIMDAL-------------- 111
Query: 1237 YLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFF 1296
E V LS G +R+ +
Sbjct: 112 -----ESVEVLDLKKKLGELSQGTIRRVQLA----------------------------- 137
Query: 1297 PPFSYKARLFFHKPKFGILDECTNA----TSVDVEEQLYRLAKDMGITFVTSSQ 1346
+ +LD+ A + V + + + K+ GI ++S +
Sbjct: 138 -------STLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 184
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 86.1 bits (213), Expect = 3e-19
Identities = 40/205 (19%), Positives = 75/205 (36%), Gaps = 28/205 (13%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGSDLNKEI 515
+ L+ +V G L + GPNG+GKS+L + G+ +G + + L
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 74
Query: 516 FYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINW 575
Y+ Q+ T + D+ L + ++ + L+ L R
Sbjct: 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN----DVAGALALDDKLGRST------- 123
Query: 576 GDELSLGEQQRLGMARLFYH-------KPKFAILDECTSAVTTDMEERFCAKVRAM---G 625
++LS GE QR+ +A + + +LDE +++ + + A+ G
Sbjct: 124 -NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG 182
Query: 626 TSCITISHRPALVAFH-DVVLSLDG 649
+ + SH H L G
Sbjct: 183 LAIVMSSHDLNHTLRHAHRAWLLKG 207
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 43.0 bits (101), Expect = 9e-05
Identities = 40/236 (16%), Positives = 72/236 (30%), Gaps = 61/236 (25%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178
L+ E+ G+ L + GPNG+GKS++ + G+ GS+ Q ++ +
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEA---------WSA 67
Query: 1179 QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 1238
+ L Q P + L H K + + + L
Sbjct: 68 TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELL---------NDVAGALALDDK 118
Query: 1239 LEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPP 1298
L R + LS GE QR+ + + ++
Sbjct: 119 LGRS----------TNQLSGGEWQRVRLAAVVL--------------------------- 141
Query: 1299 FSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDM---GITFVTSSQRPALI 1351
+ +LDE N+ V + L ++ + G+ V SS
Sbjct: 142 --QITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHT 195
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 84.2 bits (208), Expect = 1e-18
Identities = 42/217 (19%), Positives = 87/217 (40%), Gaps = 20/217 (9%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
++ V V +++ L + G ++ GP+G GKS+L R++ GL + SG +
Sbjct: 1 VQLQNVTKAWGEVVVS-KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 59
Query: 505 PGVG----SDLNKEIFYVPQRPY-TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD 559
+ + V Q ++ + + + L + + + + ++ + +
Sbjct: 60 GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 119
Query: 560 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE----CTSAVTTDMEE 615
L +LLDR P LS G++QR+ + R +P +LDE +A+ M
Sbjct: 120 LAHLLDRKP--------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 171
Query: 616 RFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGE 650
+ +G + I ++H +V+ G
Sbjct: 172 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 50.3 bits (120), Expect = 4e-07
Identities = 28/156 (17%), Positives = 63/156 (40%), Gaps = 37/156 (23%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ + +I G+ ++ GP+G GKS++ R++ GL + SG L + +++ + G+
Sbjct: 17 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 76
Query: 1177 VPQRPYTCLG-TLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDSYLKTIL 1230
V Q ++ + + + L +E R ++ +++ ++LD K
Sbjct: 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQV----AEVLQLAHLLDRKPKA-- 130
Query: 1231 EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGM 1266
LS G++QR+ +
Sbjct: 131 -------------------------LSGGQRQRVAI 141
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 82.7 bits (204), Expect = 5e-18
Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 19/194 (9%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI--------AKPGVG 508
++ + LKV G + + G NG+GK++ + GL G I KP
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568
+ R T+ + L+ + ++ E + L+ L +
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV---TTDMEERFCAKVRAMG 625
LS GEQQ L + R +PK ++DE + + K+ G
Sbjct: 138 --------GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG 189
Query: 626 TSCITISHRPALVA 639
T+ + +
Sbjct: 190 TTILLVEQNALGAL 203
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 40.7 bits (95), Expect = 7e-04
Identities = 24/155 (15%), Positives = 48/155 (30%), Gaps = 32/155 (20%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT-----KPSQHIDEEAGSG 1171
+ + ++ G+ + + G NG+GK++ + GL G + ++ G
Sbjct: 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82
Query: 1172 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 1231
+ +R + L + ++ +R++ E L L T
Sbjct: 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGT--- 139
Query: 1232 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGM 1266
LS GEQQ L +
Sbjct: 140 ------------------------LSGGEQQMLAI 150
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 79.7 bits (196), Expect = 5e-17
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 24/194 (12%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
N ++NL+LKVE G +I GP G+GK+ ++ G SG I G
Sbjct: 12 KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG-----KDVTD 66
Query: 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV-------ELLKNVDLEYLLDRYPP 569
P++ A L + + +E + + +++ +E+LLDR P
Sbjct: 67 LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL 126
Query: 570 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEERFCAKVRAMG 625
LS GEQQR+ +AR PK +LDE SA+ + E +
Sbjct: 127 --------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK 178
Query: 626 TSCITISHRPALVA 639
+ + I+H
Sbjct: 179 LTVLHITHDQTEAR 192
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 42.7 bits (100), Expect = 1e-04
Identities = 22/151 (14%), Positives = 53/151 (35%), Gaps = 28/151 (18%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
L+ ++ G+ ++ GP G+GK+ ++ G SG + + + + + I +
Sbjct: 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAF 76
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 1236
V Q + ++ ++ +++ + R+
Sbjct: 77 VYQNY---------SLFPHMNVKKNLEFGMRMKKIKDP------------------KRVL 109
Query: 1237 YLLEREEVGWDANLNWEDILSLGEQQRLGMV 1267
++ + N LS GEQQR+ +
Sbjct: 110 DTARDLKIEHLLDRNPLT-LSGGEQQRVALA 139
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 67.7 bits (165), Expect = 7e-13
Identities = 44/199 (22%), Positives = 77/199 (38%), Gaps = 22/199 (11%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYV 518
N+ ++ ++ GP G+GKS ++ G+ G + G + I +V
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 519 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV-ELLKNVDLEYLLDRYPPEKEINWGD 577
PQ A+ + VE + V E+ + + + +LLDR P
Sbjct: 76 PQ--DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP--------A 125
Query: 578 ELSLGEQQRLGMARLFYHKPKFAILDECTS----AVTTDMEERFCAKVRAMGTSCITISH 633
LS GE+QR+ +AR +P+ +LDE S + E R + ++H
Sbjct: 126 RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185
Query: 634 RPALVAF--HDVVLSLDGE 650
A +V + L+G
Sbjct: 186 DLIEAAMLADEVAVMLNGR 204
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 46.2 bits (109), Expect = 1e-05
Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 9/120 (7%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178
+ FE + ++ GP G+GKS ++ G+ G + I GI +VP
Sbjct: 18 VDFE-MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76
Query: 1179 QR----PYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 1234
Q P+ + + + R E + R ++ + + ++LD + G R
Sbjct: 77 QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMA----EKLGIAHLLDRKPARLSGGER 132
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 56.9 bits (136), Expect = 1e-09
Identities = 18/178 (10%), Positives = 43/178 (24%), Gaps = 28/178 (15%)
Query: 474 LLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQL 533
++ITG G GK++L + + + V T +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVR----------------DPETKKRTG 46
Query: 534 IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593
+T++ + + + ++ E
Sbjct: 47 FRIITTEGKKKIFSSKFFTSKKLVGSYG--VNVQYF--------EELAIPILERAYREAK 96
Query: 594 YHKPKFAILDECTSAVTTDMEERFCAK--VRAMGTSCITISHRPALVAFHDVVLSLDG 649
+ K I+DE + R + + + + + + L G
Sbjct: 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPG 154
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1374 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.97 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.97 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.97 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.83 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.8 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.62 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.58 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.28 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.25 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.75 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 98.74 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 98.63 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.54 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.44 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.3 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.87 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.49 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.13 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.08 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.94 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.42 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.25 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.13 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.02 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.97 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.91 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.9 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.58 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.5 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.47 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.47 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 95.41 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.39 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.37 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.27 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.22 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.17 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.16 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.01 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.9 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 94.88 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.86 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.82 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.76 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.67 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.6 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.6 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.57 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.56 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.51 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.51 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.45 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.41 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.4 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.39 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.35 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.18 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.18 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.14 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.09 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.08 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.07 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.91 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.86 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.81 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 93.69 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.68 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.65 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.58 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.51 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 93.48 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.43 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.41 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 93.38 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.31 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.31 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.27 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.23 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.21 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 93.2 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.2 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.19 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.18 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.14 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.09 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.0 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.99 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 92.98 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 92.97 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.93 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.92 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.91 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.9 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 92.88 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 92.75 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.74 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 92.72 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.7 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.68 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.64 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.53 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.5 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 92.49 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 92.44 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.43 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.43 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.43 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.42 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.38 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.35 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.33 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.3 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.29 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 92.27 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 92.2 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.12 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.02 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.02 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.99 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.97 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.93 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 91.88 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.88 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 91.82 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.82 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.79 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.78 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.74 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.73 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 91.69 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.63 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 91.63 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.6 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 91.57 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 91.51 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.49 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 91.48 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 91.38 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.33 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 91.27 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.26 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.26 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 91.24 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.21 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.19 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 91.18 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.16 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 91.11 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.05 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.05 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.04 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.99 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.99 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 90.98 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.96 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.96 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 90.95 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.91 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.89 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 90.87 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 90.85 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 90.77 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 90.72 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 90.66 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 90.59 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 90.58 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 90.56 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 90.56 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.55 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 90.53 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.52 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 90.51 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.48 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 90.47 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.47 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.44 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.44 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.44 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 90.37 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 90.35 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 90.26 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 90.26 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.23 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 90.21 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 90.2 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.18 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 90.14 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 90.08 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 90.05 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.05 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 89.96 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.95 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.92 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.85 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.83 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 89.81 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 89.8 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.79 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 89.69 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 89.69 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.68 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.59 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.49 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 89.46 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 89.45 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 89.39 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 89.36 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.32 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.29 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 89.29 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 89.19 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 89.08 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 89.05 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 89.03 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.02 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.0 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.0 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.96 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 88.95 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.92 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 88.9 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 88.89 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 88.84 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.67 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.63 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 88.61 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 88.49 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 88.48 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 88.41 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 88.39 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 88.35 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.31 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 88.24 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 88.2 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 88.15 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 88.11 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 88.07 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.07 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.05 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 87.98 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 87.96 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.95 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 87.92 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.91 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 87.86 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 87.85 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 87.84 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 87.81 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 87.78 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 87.78 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.74 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 87.65 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 87.58 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 87.49 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 87.49 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 87.47 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 87.35 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.28 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.28 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.27 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 87.22 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 87.07 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 87.03 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 87.02 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 86.94 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 86.88 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 86.88 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 86.85 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 86.85 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.8 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 86.7 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 86.7 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.64 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 86.6 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 86.6 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 86.56 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.53 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 86.53 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 86.52 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 86.52 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 86.49 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.46 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 86.31 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 86.27 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.26 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 86.25 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 86.22 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 86.21 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 86.2 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 86.16 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 86.15 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 86.03 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.95 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 85.92 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 85.89 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 85.89 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 85.89 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 85.89 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 85.69 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 85.57 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 85.51 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 85.48 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 85.44 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 85.42 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 85.35 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 85.32 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 85.27 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 85.26 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.25 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 85.18 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 85.14 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 85.09 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 85.06 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 85.0 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 84.91 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 84.87 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 84.84 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 84.83 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 84.82 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 84.82 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 84.77 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 84.75 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 84.68 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 84.54 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 84.52 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 84.39 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 84.36 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 84.27 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 84.27 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 84.18 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 84.13 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 84.08 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 83.93 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 83.92 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 83.83 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 83.81 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 83.76 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 83.73 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 83.67 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 83.62 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 83.61 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 83.59 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 83.56 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 83.54 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 83.53 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 83.49 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 83.46 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 83.43 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 83.33 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 83.31 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 83.24 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 83.23 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 83.22 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 83.2 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 83.1 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 83.1 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 82.93 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 82.83 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 82.78 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 82.68 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 82.66 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 82.56 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 82.46 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 82.4 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 82.36 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 82.2 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 81.99 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 81.95 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 81.94 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 81.85 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 81.82 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 81.7 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 81.6 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 81.56 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 81.54 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 81.49 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 81.42 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 81.35 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 81.21 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.16 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 81.08 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 81.05 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 80.95 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 80.9 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 80.9 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 80.89 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.83 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 80.57 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 80.53 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 80.47 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 80.41 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 80.26 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 80.23 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 80.11 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=388.51 Aligned_cols=201 Identities=23% Similarity=0.392 Sum_probs=102.0
Q ss_pred CCEEEEEEEEECCCC-CEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCC------CCCCCCE
Q ss_conf 829996459986999-702231027780998899985899966489998779986995489929988------4434627
Q 000647 443 NYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1374)
Q Consensus 443 ~~i~~~~v~~~~p~~-~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~------~~~~~~i 515 (1374)
+.|+|+||+|.||++ .++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.+
T Consensus 15 g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 94 (255)
T d2hyda1 15 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 94 (255)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHHEE
T ss_conf 87999988999599997606443899839989999889998099999999712786300015399875307888863414
Q ss_pred EEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCC---CCCCCCHHHHHHHHHHHH
Q ss_conf 89915798986778897517998876467799888999999769835885099985556---899879569999999999
Q 000647 516 FYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN---WGDELSLGEQQRLGMARL 592 (1374)
Q Consensus 516 ~~v~Q~p~l~~gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~---~g~~LSgGqkQRlalARa 592 (1374)
+||||+|++|++|++|||.++.+. .+++++.++++.+++.+++.++|.+.++. .|.+||||||||++||||
T Consensus 95 ~~v~Q~~~lf~~Ti~eNi~~g~~~------~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARa 168 (255)
T d2hyda1 95 GLVQQDNILFSDTVKENILLGRPT------ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 168 (255)
T ss_dssp EEECSSCCCCSSBHHHHHGGGCSS------CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHCCCCC------CCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 565101568998799998515867------99999999999969799997362420103338889849999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 7159989998668889999999999999980--59779999059226861367998149
Q 000647 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 593 l~~~p~iliLDEptSaLD~~~e~~i~~~l~~--~~~TiI~itHr~~~~~~~d~il~l~~ 649 (1374)
++++|+++|||||||+||.+++..+++.+++ .++|+|+||||++.+..+|+|++|++
T Consensus 169 l~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~ 227 (255)
T d2hyda1 169 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIEN 227 (255)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEET
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEEC
T ss_conf 85599899983765447977999999999987538889999689999985999999989
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=384.40 Aligned_cols=200 Identities=23% Similarity=0.337 Sum_probs=157.9
Q ss_pred CEEEEEEEEECCC-CCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCC------CCCCCCEE
Q ss_conf 2999645998699-9702231027780998899985899966489998779986995489929988------44346278
Q 000647 444 YIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~p~-~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~------~~~~~~i~ 516 (1374)
.|+|+||+|.||. ++++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.++|.+ .+++++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EEECCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHHHHH
Q ss_conf 991579898677889751799887646779988899999976983588509998555---68998795699999999997
Q 000647 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1374)
Q Consensus 517 ~v~Q~p~l~~gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal 593 (1374)
||||+|++|++|++|||.++.+. .+++++.++++.+++.+++..+|.+.++ +.|..||||||||++||||+
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal 154 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPG------MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL 154 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTT------CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98244655784000352235755------438889999999755788876320134432787886698898987544344
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 159989998668889999999999999980--59779999059226861367998149
Q 000647 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 594 ~~~p~iliLDEptSaLD~~~e~~i~~~l~~--~~~TiI~itHr~~~~~~~d~il~l~~ 649 (1374)
+++|+++|||||||+||..++..+++.+++ .++|+|+||||++.++.+|+|++|++
T Consensus 155 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~ 212 (241)
T d2pmka1 155 VNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEK 212 (241)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEET
T ss_pred HCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEEC
T ss_conf 4165135564776555989999999999998589989999788999984999999989
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=376.73 Aligned_cols=203 Identities=23% Similarity=0.358 Sum_probs=133.4
Q ss_pred CCCEEEEEEEEECCCC-CEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCC------CCCCCC
Q ss_conf 8829996459986999-702231027780998899985899966489998779986995489929988------443462
Q 000647 442 ANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 514 (1374)
Q Consensus 442 ~~~i~~~~v~~~~p~~-~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~------~~~~~~ 514 (1374)
.+.|+|+||+|.||+. .++|+++||+|++|+.++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.
T Consensus 11 ~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 90 (253)
T d3b60a1 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 90 (253)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred CEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHE
T ss_conf 30799998899929999763533289985999999999999859999999862168884689878801211106654206
Q ss_pred EEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHHH
Q ss_conf 78991579898677889751799887646779988899999976983588509998555---689987956999999999
Q 000647 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMAR 591 (1374)
Q Consensus 515 i~~v~Q~p~l~~gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalAR 591 (1374)
++|+||+|+++++|+++|+.++... ..+++++.++++.+++.++++++|.+.++ +.+..||||||||++|||
T Consensus 91 i~~v~Q~~~l~~~ti~~n~~~~~~~-----~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 91 VALVSQNVHLFNDTVANNIAYARTE-----EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTTTS-----CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHHHCCCC-----CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 8799502544786202433205722-----08999999999998179999735544101434888984999999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 97159989998668889999999999999980--59779999059226861367998149
Q 000647 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 592 al~~~p~iliLDEptSaLD~~~e~~i~~~l~~--~~~TiI~itHr~~~~~~~d~il~l~~ 649 (1374)
|++++|+++|||||||+||.+++..+++.+++ .++|+|+||||++.+..+|+|++|++
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~ 225 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVED 225 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEET
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEEC
T ss_conf 995499889951644458988999999999875227889999887999985999999989
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=374.53 Aligned_cols=203 Identities=26% Similarity=0.401 Sum_probs=142.6
Q ss_pred CCCEEEEEEEEECCCC--CEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCC------CCCCC
Q ss_conf 8829996459986999--702231027780998899985899966489998779986995489929988------44346
Q 000647 442 ANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNK 513 (1374)
Q Consensus 442 ~~~i~~~~v~~~~p~~--~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~------~~~~~ 513 (1374)
++.|+|+||+|.||+. ..+|+|+||+|++||.++|+||||||||||+++|+|+++|.+|+|.++|.+ ..+++
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp CCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHHH
T ss_conf 33699999899889999997674438998499899999999984999999986143787689988998531101378887
Q ss_pred CEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHH
Q ss_conf 278991579898677889751799887646779988899999976983588509998555---68998795699999999
Q 000647 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMA 590 (1374)
Q Consensus 514 ~i~~v~Q~p~l~~gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalA 590 (1374)
.++||||+|++|++|++||+.++... ...+.++.+.++.+++.+++.++|.+.++ +.+..||||||||++||
T Consensus 89 ~i~~v~Q~~~lf~~tv~eni~~g~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiA 163 (251)
T d1jj7a_ 89 QVAAVGQEPQVFGRSLQENIAYGLTQ-----KPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALA 163 (251)
T ss_dssp HEEEECSSCCCCSSBHHHHHHCSCSS-----CCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEE
T ss_conf 76540456500276346554542101-----3027889999999989999985612111367516766895470489986
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 997159989998668889999999999999980----59779999059226861367998149
Q 000647 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 591 Ral~~~p~iliLDEptSaLD~~~e~~i~~~l~~----~~~TiI~itHr~~~~~~~d~il~l~~ 649 (1374)
||++++|+++|||||||+||..++..+++.+++ .++|+|+||||++.++.+|+|++|++
T Consensus 164 Ral~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~ 226 (251)
T d1jj7a_ 164 RALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEG 226 (251)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEET
T ss_pred ECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEEC
T ss_conf 044568707871675765685368999999999765069899999597999985999999989
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=379.75 Aligned_cols=200 Identities=24% Similarity=0.433 Sum_probs=124.0
Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCC------CCCCCCEEEE
Q ss_conf 9996459986999702231027780998899985899966489998779986995489929988------4434627899
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1374)
Q Consensus 445 i~~~~v~~~~p~~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~------~~~~~~i~~v 518 (1374)
|+++||+|.|++++++|+|+||++++|+.++|+||||||||||+++|+|+++|++|+|.++|.+ ..++++|+||
T Consensus 2 le~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 81 (242)
T d1mv5a_ 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (242)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEEE
T ss_conf 79998899879998414225899859999999999999799999999996098987798899884424678887436797
Q ss_pred ECCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCC---CCCCCCHHHHHHHHHHHHHCC
Q ss_conf 15798986778897517998876467799888999999769835885099985556---899879569999999999715
Q 000647 519 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN---WGDELSLGEQQRLGMARLFYH 595 (1374)
Q Consensus 519 ~Q~p~l~~gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~---~g~~LSgGqkQRlalARal~~ 595 (1374)
||+|++|++|++||+.++... ..+++++.++++.+++.++....|.+.++. .|.+||||||||++||||+++
T Consensus 82 ~Q~~~lf~~ti~eNi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~ 156 (242)
T d1mv5a_ 82 SQDSAIMAGTIRENLTYGLEG-----DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (242)
T ss_dssp CCSSCCCCEEHHHHTTSCTTS-----CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHEECCCCC-----CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 566545785345430124455-----542356778999997555420374210152368789879999999999999852
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 9989998668889999999999999980--59779999059226861367998149
Q 000647 596 KPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 596 ~p~iliLDEptSaLD~~~e~~i~~~l~~--~~~TiI~itHr~~~~~~~d~il~l~~ 649 (1374)
+|+++|||||||+||..++..+++.+++ .++|+|+||||++.+..+|+|++|++
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~ 212 (242)
T d1mv5a_ 157 NPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEK 212 (242)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEET
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEEC
T ss_conf 99899965886556988999998878887179989999787999984999999989
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.4e-45 Score=361.32 Aligned_cols=210 Identities=20% Similarity=0.278 Sum_probs=193.0
Q ss_pred CCCCEEEEEEEEECCCC-CCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC--CCCCC
Q ss_conf 89978996327847983-3333232088828985999759999299999999368999998386599866543--48765
Q 000647 1096 YQDSISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGC 1172 (1374)
Q Consensus 1096 ~~g~I~f~~V~~~yp~~-~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~--~~~r~ 1172 (1374)
.+|.|+|+||+|.||+. +++|+|+||+|++||+++|||+||||||||+++|.|+++|.+|+|.++|.|++++ ..+|.
T Consensus 13 ~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 92 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 92 (255)
T ss_dssp CSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHH
T ss_conf 78879999889995999976064438998399899998899980999999997127863000153998753078888634
Q ss_pred CEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCC-C
Q ss_conf 179963988779865678751699826899999763068875445677896899999985797023431103786545-6
Q 000647 1173 GIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-N 1251 (1374)
Q Consensus 1173 ~i~~VpQ~P~Lf~GTiRdNi~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~-~ 1251 (1374)
++++|||+|++|+|||||||.++.+ +..+++++++++.+++.++++.+|.|+|+.+ +
T Consensus 93 ~i~~v~Q~~~lf~~Ti~eNi~~g~~----------------------~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 93 QIGLVQQDNILFSDTVKENILLGRP----------------------TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCS----------------------SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EEEEEECCCCCCCCCHHHHHHCCCC----------------------CCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCC
T ss_conf 1456510156899879999851586----------------------799999999999969799997362420103338
Q ss_pred CCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 43589914442103423123577620012120235676304567887662211123368688850568899989999999
Q 000647 1252 WEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLY 1331 (1374)
Q Consensus 1252 ~~~~LS~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l~ 1331 (1374)
.+.+||||||||+|| ||||+++|+|++||||||+||.+++..+.
T Consensus 151 ~g~~LSgGq~QRi~i------------------------------------ARal~~~p~ililDEpts~LD~~t~~~i~ 194 (255)
T d2hyda1 151 RGVKLSGGQKQRLSI------------------------------------ARIFLNNPPILILDEATSALDLESESIIQ 194 (255)
T ss_dssp GGTTSCHHHHHHHHH------------------------------------HHHHHHCCSEEEEESTTTTCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH------------------------------------HHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 889849999999999------------------------------------99985599899983765447977999999
Q ss_pred HHHHH--CCCEEEEECCCCCCHHHCCCEEEEECC
Q ss_conf 99981--696399916998844210121898718
Q 000647 1332 RLAKD--MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1332 ~~~~~--~~~TvI~IaHR~~~i~~~~~~l~l~~g 1363 (1374)
+.+.. .++|+|.|+||++.++.+|+++.|.+|
T Consensus 195 ~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G 228 (255)
T d2hyda1 195 EALDVLSKDRTTLIVAHRLSTITHADKIVVIENG 228 (255)
T ss_dssp HHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETT
T ss_pred HHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECC
T ss_conf 9999875388899996899999859999999899
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=358.00 Aligned_cols=207 Identities=17% Similarity=0.219 Sum_probs=188.3
Q ss_pred CEEEEEEEEECCC-CCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC--CCCCCCEE
Q ss_conf 7899632784798-33333232088828985999759999299999999368999998386599866543--48765179
Q 000647 1099 SISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIF 1175 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~-~~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~--~~~r~~i~ 1175 (1374)
+|+|+||+|.||. .+++|+|+||+|++||++|||||||||||||+++|.|+++|.+|+|.+||.||..+ ..+|.+++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCC-CCC
Q ss_conf 9639887798656787516998268999997630688754456778968999999857970234311037865456-435
Q 000647 1176 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WED 1254 (1374)
Q Consensus 1176 ~VpQ~P~Lf~GTiRdNi~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~~-~~~ 1254 (1374)
+|||+|++|+|||+|||.++.+ +..++.++.+++.+++.+.++..|.|+++.++ .+.
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~----------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~ 138 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANP----------------------GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 138 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTST----------------------TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTT
T ss_pred EEECCCCCCCCCCCCCCCCCCC----------------------CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
T ss_conf 9824465578400035223575----------------------543888999999975578887632013443278788
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 89914442103423123577620012120235676304567887662211123368688850568899989999999999
Q 000647 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1334 (1374)
Q Consensus 1255 ~LS~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l~~~~ 1334 (1374)
.||||||||+|+ |||++++|+|+|||||||+||+.+++.+.+.+
T Consensus 139 ~LSGGq~QRval------------------------------------ARal~~~p~ililDEpts~LD~~~~~~i~~~l 182 (241)
T d2pmka1 139 GLSGGQRQRIAI------------------------------------ARALVNNPKILIFDEATSALDYESEHVIMRNM 182 (241)
T ss_dssp CCCHHHHHHHHH------------------------------------HHHHTTCCSEEEECCCCSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH------------------------------------HHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 669889898754------------------------------------43444165135564776555989999999999
Q ss_pred HH--CCCEEEEECCCCCCHHHCCCEEEEECC
Q ss_conf 81--696399916998844210121898718
Q 000647 1335 KD--MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1335 ~~--~~~TvI~IaHR~~~i~~~~~~l~l~~g 1363 (1374)
+. .++|+|.|+||++.++..|+++.|.+|
T Consensus 183 ~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G 213 (241)
T d2pmka1 183 HKICKGRTVIIIAHRLSTVKNADRIIVMEKG 213 (241)
T ss_dssp HHHHTTSEEEEECSSGGGGTTSSEEEEEETT
T ss_pred HHHHCCCEEEEEECCHHHHHHCCEEEEEECC
T ss_conf 9985899899997889999849999999899
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9.8e-45 Score=352.70 Aligned_cols=211 Identities=19% Similarity=0.273 Sum_probs=192.0
Q ss_pred CCCCEEEEEEEEECCCC-CCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC--CCCCC
Q ss_conf 89978996327847983-3333232088828985999759999299999999368999998386599866543--48765
Q 000647 1096 YQDSISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGC 1172 (1374)
Q Consensus 1096 ~~g~I~f~~V~~~yp~~-~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~--~~~r~ 1172 (1374)
..|+|+|+||+|.||+. +++|+|+||+|++||++|||||||||||||+++|.|+++|.+|+|.+||.|++.+ ..+|.
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCC-
Q ss_conf 1799639887798656787516998268999997630688754456778968999999857970234311037865456-
Q 000647 1173 GIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN- 1251 (1374)
Q Consensus 1173 ~i~~VpQ~P~Lf~GTiRdNi~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~~- 1251 (1374)
++++|||+|++|++|+++|+.++.. ....+++++.+++.+++.++++.+|.|+++.++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~---------------------~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~ 148 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYART---------------------EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGE 148 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTT---------------------SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCT
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCC---------------------CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC
T ss_conf 6879950254478620243320572---------------------2089999999999981799997355441014348
Q ss_pred CCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 43589914442103423123577620012120235676304567887662211123368688850568899989999999
Q 000647 1252 WEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLY 1331 (1374)
Q Consensus 1252 ~~~~LS~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l~ 1331 (1374)
.+..||||||||+|| ||||+++|++++||||||+||++++..+.
T Consensus 149 ~~~~LSGGqkQRvai------------------------------------ARal~~~p~ililDEpts~LD~~~~~~i~ 192 (253)
T d3b60a1 149 NGVLLSGGQRQRIAI------------------------------------ARALLRDSPILILDEATSALDTESERAIQ 192 (253)
T ss_dssp TSCSSCHHHHHHHHH------------------------------------HHHHHHCCSEEEEETTTSSCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH------------------------------------HHHHHCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 889849999999999------------------------------------99995499889951644458988999999
Q ss_pred HHHHH--CCCEEEEECCCCCCHHHCCCEEEEECC
Q ss_conf 99981--696399916998844210121898718
Q 000647 1332 RLAKD--MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1332 ~~~~~--~~~TvI~IaHR~~~i~~~~~~l~l~~g 1363 (1374)
+.++. .++|+|.|+||++.++.+|+++.|.+|
T Consensus 193 ~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G 226 (253)
T d3b60a1 193 AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDG 226 (253)
T ss_dssp HHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETT
T ss_pred HHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECC
T ss_conf 9998752278899998879999859999999899
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-44 Score=350.02 Aligned_cols=212 Identities=24% Similarity=0.322 Sum_probs=188.2
Q ss_pred CCCCEEEEEEEEECCCC--CCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC--CCC
Q ss_conf 89978996327847983--33332320888289859997599992999999993689999983865998665434--876
Q 000647 1096 YQDSISFSKLDIITPSQ--KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSG 1171 (1374)
Q Consensus 1096 ~~g~I~f~~V~~~yp~~--~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~--~~r 1171 (1374)
.+|.|+|+||+|.||+. .++|+|+||+|++||+++||||||||||||+++|.|+++|.+|+|.+||.||.+.+ .+|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred CCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHH
T ss_conf 53369999989988999999767443899849989999999998499999998614378768998899853110137888
Q ss_pred CCEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCC
Q ss_conf 51799639887798656787516998268999997630688754456778968999999857970234311037865456
Q 000647 1172 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN 1251 (1374)
Q Consensus 1172 ~~i~~VpQ~P~Lf~GTiRdNi~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~~ 1251 (1374)
.++++|||+|++|++|+++|+.++... +..+..+....+..++.+.++.+|.|+++.++
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~---------------------~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~ 146 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQ---------------------KPTMEEITAAAVKSGAHSFISGLPQGYDTEVD 146 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSS---------------------CCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCC
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHCC---------------------CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 776540456500276346554542101---------------------30278899999999899999856121113675
Q ss_pred -CCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf -4358991444210342312357762001212023567630456788766221112336868885056889998999999
Q 000647 1252 -WEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL 1330 (1374)
Q Consensus 1252 -~~~~LS~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l 1330 (1374)
.+..||||||||+|| ||||+++|+|++||||||+||+.++..+
T Consensus 147 ~~~~~LSGGqkQRvai------------------------------------ARal~~~p~ililDEpTs~LD~~~~~~i 190 (251)
T d1jj7a_ 147 EAGSQLSGGQRQAVAL------------------------------------ARALIRKPCVLILDDATSALDANSQLQV 190 (251)
T ss_dssp SSCSSSCHHHHHHHHH------------------------------------HHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred CCCCCCCHHHCEEEEE------------------------------------EECCCCCCCEEEECCCCCCCCHHHHHHH
T ss_conf 1676689547048998------------------------------------6044568707871675765685368999
Q ss_pred HHHHHH----CCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 999981----6963999169988442101218987189
Q 000647 1331 YRLAKD----MGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1331 ~~~~~~----~~~TvI~IaHR~~~i~~~~~~l~l~~g~ 1364 (1374)
.+.+++ .++|+|.|+||+++++.+|+++.|.+|+
T Consensus 191 ~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~ 228 (251)
T d1jj7a_ 191 EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGA 228 (251)
T ss_dssp HHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTE
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCE
T ss_conf 99999976506989999959799998599999998999
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.8e-45 Score=356.18 Aligned_cols=207 Identities=25% Similarity=0.354 Sum_probs=188.3
Q ss_pred EEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC--CCCCCCEEEE
Q ss_conf 89963278479833333232088828985999759999299999999368999998386599866543--4876517996
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYV 1177 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~--~~~r~~i~~V 1177 (1374)
|+++||+|.||+.+++|+|+||+|++||++|||||||||||||+++|.|+++|.+|+|.+||.|++++ ..+|.+|++|
T Consensus 2 le~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 81 (242)
T d1mv5a_ 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (242)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEEE
T ss_conf 79998899879998414225899859999999999999799999999996098987798899884424678887436797
Q ss_pred CCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCC-CCCCCC
Q ss_conf 3988779865678751699826899999763068875445677896899999985797023431103786545-643589
Q 000647 1178 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDIL 1256 (1374)
Q Consensus 1178 pQ~P~Lf~GTiRdNi~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~-~~~~~L 1256 (1374)
||+|++|+||+|+|+.++... ...++.++.+++.+++..++...|.|+++.+ +.+.+|
T Consensus 82 ~Q~~~lf~~ti~eNi~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~L 140 (242)
T d1mv5a_ 82 SQDSAIMAGTIRENLTYGLEG---------------------DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI 140 (242)
T ss_dssp CCSSCCCCEEHHHHTTSCTTS---------------------CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCC
T ss_pred CCCCCCCCCCHHHHEECCCCC---------------------CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 566545785345430124455---------------------54235677899999755542037421015236878987
Q ss_pred CHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 91444210342312357762001212023567630456788766221112336868885056889998999999999981
Q 000647 1257 SLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD 1336 (1374)
Q Consensus 1257 S~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l~~~~~~ 1336 (1374)
|||||||+|| ||||+++|+|++||||||+||..+++.+.+.++.
T Consensus 141 SGGqkQRv~i------------------------------------ARal~~~p~ililDEpts~LD~~~~~~i~~~l~~ 184 (242)
T d1mv5a_ 141 SGGQRQRLAI------------------------------------ARAFLRNPKILMLDEATASLDSESESMVQKALDS 184 (242)
T ss_dssp CHHHHHHHHH------------------------------------HHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred CHHHHHHHHH------------------------------------HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999999999------------------------------------9998529989996588655698899999887888
Q ss_pred --CCCEEEEECCCCCCHHHCCCEEEEECC
Q ss_conf --696399916998844210121898718
Q 000647 1337 --MGITFVTSSQRPALIPFHSLELRLIDG 1363 (1374)
Q Consensus 1337 --~~~TvI~IaHR~~~i~~~~~~l~l~~g 1363 (1374)
.++|+|+|+||++.++.+|+++.|.+|
T Consensus 185 l~~~~Tvi~itH~l~~~~~~D~i~vl~~G 213 (242)
T d1mv5a_ 185 LMKGRTTLVIAHRLSTIVDADKIYFIEKG 213 (242)
T ss_dssp HHTTSEEEEECCSHHHHHHCSEEEEEETT
T ss_pred HCCCCEEEEEECCHHHHHHCCEEEEEECC
T ss_conf 71799899997879999849999999899
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=9.4e-41 Score=322.32 Aligned_cols=193 Identities=24% Similarity=0.397 Sum_probs=169.7
Q ss_pred CCCEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEECC
Q ss_conf 88299964599869997022310277809988999858999664899987799869954899299884434627899157
Q 000647 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1374)
Q Consensus 442 ~~~i~~~~v~~~~p~~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~~~~~~~i~~v~Q~ 521 (1374)
.+.|.|+|+++ .++++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.++| +++|+||.
T Consensus 36 ~~~i~~~~~~~---~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------~i~~v~Q~ 105 (281)
T d1r0wa_ 36 ENNVSFSHLCL---VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------RVSFCSQF 105 (281)
T ss_dssp ----CHHHHHH---TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------CEEEECSS
T ss_pred CCCEEEEECCC---CCCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------EEEEEECC
T ss_conf 89679997698---997677375999859999999989998299999999579747882899999-------99998164
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9898677889751799887646779988899999976983588509998555---6899879569999999999715998
Q 000647 522 PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 522 p~l~~gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~---~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
|+++++|++||+.|+.. ..+.++.++++.+++..++..++.+..+ +.+.+||||||||++|||||+++|+
T Consensus 106 ~~l~~~tv~eni~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~ 178 (281)
T d1r0wa_ 106 SWIMPGTIKENIIFGVS-------YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178 (281)
T ss_dssp CCCCSEEHHHHHTTTSC-------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred CCCCCCEEECCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 30267603214203334-------56057999999977699998461233235555423779999999999999986963
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHCCEEEEECCCCC
Q ss_conf 9998668889999999999999980---59779999059226861367998149993
Q 000647 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGEGE 652 (1374)
Q Consensus 599 iliLDEptSaLD~~~e~~i~~~l~~---~~~TiI~itHr~~~~~~~d~il~l~~~g~ 652 (1374)
++|||||||+||..++..+++.+.. .++|+|+|||+++.+..||+|++|++ |.
T Consensus 179 illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~-G~ 234 (281)
T d1r0wa_ 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQ-GS 234 (281)
T ss_dssp EEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEET-TE
T ss_pred CHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEEC-CE
T ss_conf 513338554489899999999999886289999999252899985999999989-99
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.4e-40 Score=318.09 Aligned_cols=196 Identities=21% Similarity=0.353 Sum_probs=172.2
Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCC----CCCCCCEEEEEC
Q ss_conf 9996459986999702231027780998899985899966489998779986995489929988----443462789915
Q 000647 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1374)
Q Consensus 445 i~~~~v~~~~p~~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~----~~~~~~i~~v~Q 520 (1374)
|+++||++.| ++..+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ...++.|+||||
T Consensus 1 Iev~nv~k~y-g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q 79 (232)
T d2awna2 1 VQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 79 (232)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECS
T ss_pred CEEEEEEEEE-CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEECC
T ss_conf 9999999998-999998111778869989999989998299999999658788888899999977888644432223433
Q ss_pred CCCCCC-CCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 798986-7788975179988764677998889999997698358850999855568998795699999999997159989
Q 000647 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1374)
Q Consensus 521 ~p~l~~-gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~i 599 (1374)
+|.++. -|++||+.++...........++++.++++.+++.++.++.| ..||||||||++|||||+++|++
T Consensus 80 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~--------~~LSGGqkQRvaiAraL~~~P~i 151 (232)
T d2awna2 80 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP--------KALSGGQRQRVAIGRTLVAEPSV 151 (232)
T ss_dssp SCCC---------------------CHHHHHHHHHHHHC-----------------------------CHHHHHHTCCSE
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH--------HHCCHHHHHHHHHHHHHHCCCCE
T ss_conf 4202643337889789998759988999999999997578865664896--------56999999999999997039988
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEECCCHHHHH-HCCEEEEECC
Q ss_conf 998668889999999999999980----5977999905922686-1367998149
Q 000647 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 600 liLDEptSaLD~~~e~~i~~~l~~----~~~TiI~itHr~~~~~-~~d~il~l~~ 649 (1374)
++|||||++||+.+...+++.+++ .|+|+|++||++.... .||++++|++
T Consensus 152 lllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~ 206 (232)
T d2awna2 152 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA 206 (232)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf 9975888788988998999999999874298799994899999996999999979
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=7.6e-40 Score=315.43 Aligned_cols=197 Identities=21% Similarity=0.321 Sum_probs=172.9
Q ss_pred CEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCC----CCCCCCEEEEE
Q ss_conf 29996459986999702231027780998899985899966489998779986995489929988----44346278991
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1374)
Q Consensus 444 ~i~~~~v~~~~p~~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~----~~~~~~i~~v~ 519 (1374)
.|+++|+++.|+ +..+++++||++++||.++|+||||||||||+++|+|+.+|++|+|.++|.+ ...++.|+|||
T Consensus 6 ~I~v~nlsk~yg-~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~ 84 (239)
T d1v43a3 6 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 84 (239)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred EEEEEEEEEEEC-CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEEEE
T ss_conf 499987999999-9999813067887998999999999829999999975899987879991641354770001589980
Q ss_pred CCCCCCC-CCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 5798986-778897517998876467799888999999769835885099985556899879569999999999715998
Q 000647 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 520 Q~p~l~~-gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
|+|-++. .|++||+.|+...........++++.++++.++|.++.++.| ..||||||||++|||||.++|+
T Consensus 85 Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSGGq~QRvaiAraL~~~P~ 156 (239)
T d1v43a3 85 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP--------AQLSGGQRQRVAVARAIVVEPD 156 (239)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT--------TTCCSSCHHHHHHHHHHTTCCS
T ss_pred ECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH--------HHCCHHHHHHHHHHHHHCCCCC
T ss_conf 03353422209999999998739999999999999998759855660995--------4699999889999766404998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEECCCHHHH-HHCCEEEEECC
Q ss_conf 9998668889999999999999980----597799990592268-61367998149
Q 000647 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 599 iliLDEptSaLD~~~e~~i~~~l~~----~~~TiI~itHr~~~~-~~~d~il~l~~ 649 (1374)
+++|||||++||+.+...+.+.+++ .|+|+|+|||++... ..||++++|++
T Consensus 157 iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~ 212 (239)
T d1v43a3 157 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNR 212 (239)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf 24306886668989998999999999873198079994899999986999999989
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.1e-40 Score=318.41 Aligned_cols=198 Identities=28% Similarity=0.369 Sum_probs=172.5
Q ss_pred CEEEEEEEEECCCC-CEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCC---------CCCCC
Q ss_conf 29996459986999-702231027780998899985899966489998779986995489929988---------44346
Q 000647 444 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNK 513 (1374)
Q Consensus 444 ~i~~~~v~~~~p~~-~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~---------~~~~~ 513 (1374)
.|+++|+++.|+++ ..+|+|+||+|++||.++|+||||||||||+++|+|+.+|++|+|.++|.+ ...++
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CEEEEECCCCCCC-CCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 2789915798986-778897517998876467799888999999769835885099985556899879569999999999
Q 000647 514 EIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1374)
Q Consensus 514 ~i~~v~Q~p~l~~-gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1374)
+++||||+|.++. -|++|||.||...........++++.++++.++|.++.++.| ..||||||||++||||
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p--------~~LSGGqkQRvaiARa 154 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP--------RELSGAQQQRVALARA 154 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG--------GGSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCH--------HHCCHHHHHHHHHHHH
T ss_conf 51477304334666657777665567613799999999999986659176664895--------4599999858998757
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEECCCHHHH-HHCCEEEEECC
Q ss_conf 7159989998668889999999999999980----597799990592268-61367998149
Q 000647 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1374)
Q Consensus 593 l~~~p~iliLDEptSaLD~~~e~~i~~~l~~----~~~TiI~itHr~~~~-~~~d~il~l~~ 649 (1374)
|.++|++++|||||++||+.+...+.+.+++ .|+|+|+|||+++.+ .+||++++|++
T Consensus 155 L~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~ 216 (242)
T d1oxxk2 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVK 216 (242)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred HHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf 76046614544786679989988998999999863598799997999999996999999989
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-39 Score=313.36 Aligned_cols=198 Identities=23% Similarity=0.358 Sum_probs=166.4
Q ss_pred CEEEEEEEEECCCCC---EEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCC------C----
Q ss_conf 299964599869997---022310277809988999858999664899987799869954899299884------4----
Q 000647 444 YIEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D---- 510 (1374)
Q Consensus 444 ~i~~~~v~~~~p~~~---~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~~------~---- 510 (1374)
.|+++|+++.|+++. .+++|+||++++||.++|+||||||||||+++|+|+.+|++|+|.++|.+- +
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHH
T ss_conf 98999079994899820898713377884997999988999982165575068877776626999998576885551231
Q ss_pred CCCCEEEEECCCCCCC-CCHHHHHCCCCCCCCCC---CCCCHHHHHHHHHHCCCHH-HHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf 3462789915798986-77889751799887646---7799888999999769835-88509998555689987956999
Q 000647 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEV---EPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQ 585 (1374)
Q Consensus 511 ~~~~i~~v~Q~p~l~~-gTlreni~~~~~~~~~~---~~~~~~~~~~~l~~~~L~~-~~~~~~~~~~~~~g~~LSgGqkQ 585 (1374)
.+++|+||+|+|.++. -|+.||+.+|....... .....+++.+.++.++|.+ +.++.| ..|||||||
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p--------~~LSGGqkQ 152 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP--------NQLSGGQQQ 152 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG--------GGSCHHHHH
T ss_pred HCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH--------HHCCHHHHH
T ss_conf 255577880412417686688877578887224789999999999998876242345534880--------238999999
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 99999997159989998668889999999999999980----59779999059226861367998149
Q 000647 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 586 RlalARal~~~p~iliLDEptSaLD~~~e~~i~~~l~~----~~~TiI~itHr~~~~~~~d~il~l~~ 649 (1374)
|++||||+.++|++++||||||+||+.+...+++.+++ .|+|+|+|||+++..++||++++|++
T Consensus 153 RvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~ 220 (230)
T d1l2ta_ 153 RVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKD 220 (230)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEET
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEEC
T ss_conf 99987565227888994687654698999999999999998439999998788899986998999989
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.8e-40 Score=316.92 Aligned_cols=198 Identities=27% Similarity=0.360 Sum_probs=171.1
Q ss_pred CEEEEEEEEECCCCC---EEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCC------C---CC
Q ss_conf 299964599869997---02231027780998899985899966489998779986995489929988------4---43
Q 000647 444 YIEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------S---DL 511 (1374)
Q Consensus 444 ~i~~~~v~~~~p~~~---~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~------~---~~ 511 (1374)
.|+++|+++.|+++. .+|+|+||+|++||.++|+||||||||||+++|+|+.+|++|+|.++|.+ . .+
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHH
T ss_conf 97998279996999814898615057886997999989998988899998758863667732886768520875551155
Q ss_pred CCCEEEEECCCCCCC-CCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 462789915798986-7788975179988764677998889999997698358850999855568998795699999999
Q 000647 512 NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1374)
Q Consensus 512 ~~~i~~v~Q~p~l~~-gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalA 590 (1374)
+++++||||+|-++. -|++||+.+|............+++.++++.++|.+..++.| ..||||||||++||
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~--------~~LSGG~~QRvaiA 152 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP--------SNLSGGQKQRVAIA 152 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB--------SCCCHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCH--------HHCCHHHHHHHHHH
T ss_conf 4166430225222799649999999999849998999999999999769903554894--------34999999899986
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEECCCHHHHH-HCCEEEEECC
Q ss_conf 997159989998668889999999999999980----5977999905922686-1367998149
Q 000647 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 591 Ral~~~p~iliLDEptSaLD~~~e~~i~~~l~~----~~~TiI~itHr~~~~~-~~d~il~l~~ 649 (1374)
||+.++|+++||||||++||+.+...+++.+++ .|+|+|+|||++..+. +||++++|++
T Consensus 153 raL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~ 216 (240)
T d3dhwc1 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISN 216 (240)
T ss_dssp HHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEET
T ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEEC
T ss_conf 4010589868744655658988856799999999864697899983899999986999999979
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.9e-41 Score=324.47 Aligned_cols=195 Identities=21% Similarity=0.301 Sum_probs=169.1
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEE
Q ss_conf 99789963278479833333232088828985999759999299999999368999998386599866543487651799
Q 000647 1097 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176 (1374)
Q Consensus 1097 ~g~I~f~~V~~~yp~~~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~~~r~~i~~ 1176 (1374)
.+.|+|+++++ .+.+||+|+||+|++||++||+||||||||||+++|.|+++|.+|+|.++|. ++|
T Consensus 36 ~~~i~~~~~~~---~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~-----------i~~ 101 (281)
T d1r0wa_ 36 ENNVSFSHLCL---VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR-----------VSF 101 (281)
T ss_dssp ----CHHHHHH---TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSC-----------EEE
T ss_pred CCCEEEEECCC---CCCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCE-----------EEE
T ss_conf 89679997698---9976773759998599999999899982999999995797478828999999-----------999
Q ss_pred ECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCC-CCCC
Q ss_conf 639887798656787516998268999997630688754456778968999999857970234311037865456-4358
Q 000647 1177 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN-WEDI 1255 (1374)
Q Consensus 1177 VpQ~P~Lf~GTiRdNi~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~~-~~~~ 1255 (1374)
+||+|++|++|+++||.++... .+...+.+++.+.+...+...+.++++.++ .+.+
T Consensus 102 v~Q~~~l~~~tv~eni~~~~~~-----------------------~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 158 (281)
T d1r0wa_ 102 CSQFSWIMPGTIKENIIFGVSY-----------------------DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT 158 (281)
T ss_dssp ECSSCCCCSEEHHHHHTTTSCC-----------------------CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTT
T ss_pred EECCCCCCCCEEECCCCCCCCC-----------------------CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
T ss_conf 8164302676032142033345-----------------------60579999999776999984612332355554237
Q ss_pred CCHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHH-H
Q ss_conf 991444210342312357762001212023567630456788766221112336868885056889998999999999-9
Q 000647 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL-A 1334 (1374)
Q Consensus 1256 LS~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l~~~-~ 1334 (1374)
||||||||+|+ ||||+++|++++||||||+||+.+++.+.+. +
T Consensus 159 LSgGqkQRv~l------------------------------------ARaL~~~p~illLDEPts~LD~~~~~~i~~~~~ 202 (281)
T d1r0wa_ 159 LSGGQRARISL------------------------------------ARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 202 (281)
T ss_dssp SCHHHHHHHHH------------------------------------HHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCC
T ss_pred CCHHHHHHHHH------------------------------------HHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 79999999999------------------------------------999986963513338554489899999999999
Q ss_pred H--HCCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 8--16963999169988442101218987189
Q 000647 1335 K--DMGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1335 ~--~~~~TvI~IaHR~~~i~~~~~~l~l~~g~ 1364 (1374)
. ..+.|+|.|+||++.++.+|+++.|.+|+
T Consensus 203 ~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~ 234 (281)
T d1r0wa_ 203 CKLMANKTRILVTSKMEHLRKADKILILHQGS 234 (281)
T ss_dssp CCCTTTSEEEEECSCHHHHHTCSEEEEEETTE
T ss_pred HHHHCCCEEEEEECHHHHHHHCCEEEEEECCE
T ss_conf 88628999999925289998599999998999
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.7e-39 Score=312.77 Aligned_cols=197 Identities=24% Similarity=0.346 Sum_probs=170.9
Q ss_pred CEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCC-----C-----CCCC
Q ss_conf 29996459986999702231027780998899985899966489998779986995489929988-----4-----4346
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S-----DLNK 513 (1374)
Q Consensus 444 ~i~~~~v~~~~p~~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~-----~-----~~~~ 513 (1374)
.|+++|+++.|. +..+++|+||++++||.++|+||||||||||+++|+|+.+|++|+|.++|.+ . ..++
T Consensus 3 ~i~v~nl~k~yg-~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r 81 (240)
T d1g2912 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (240)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred CEEEEEEEEEEC-CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCCC
T ss_conf 189986999989-9999856066886998999999999809999999964878898989999998035664442453225
Q ss_pred CEEEEECCCCCCC-CCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 2789915798986-778897517998876467799888999999769835885099985556899879569999999999
Q 000647 514 EIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1374)
Q Consensus 514 ~i~~v~Q~p~l~~-gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1374)
.++||||+|-++. -|+.||+.+|...........++++.++++.+++.++.++.| ..||||||||++||||
T Consensus 82 ~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p--------~~LSGGqkQRv~IAra 153 (240)
T d1g2912 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP--------RELSGGQRQRVALGRA 153 (240)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG--------GGSCHHHHHHHHHHHH
T ss_pred CCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH--------HHCCHHHHHHHHHHHH
T ss_conf 51200221222310116676330687729998999999999998759966762993--------3499999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEECCCHHHHH-HCCEEEEECC
Q ss_conf 7159989998668889999999999999980----5977999905922686-1367998149
Q 000647 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 593 l~~~p~iliLDEptSaLD~~~e~~i~~~l~~----~~~TiI~itHr~~~~~-~~d~il~l~~ 649 (1374)
|.++|+++||||||++||+.+...+.+.+++ .|.|+|+|||+++.+. .||++++|++
T Consensus 154 L~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~ 215 (240)
T d1g2912 154 IVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNR 215 (240)
T ss_dssp HHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEEC
T ss_conf 82699889825887656989998999999999863698899995999999996999999989
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.3e-39 Score=309.71 Aligned_cols=196 Identities=27% Similarity=0.374 Sum_probs=170.5
Q ss_pred CEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCC----CCCCCCEEEEE
Q ss_conf 29996459986999702231027780998899985899966489998779986995489929988----44346278991
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1374)
Q Consensus 444 ~i~~~~v~~~~p~~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~----~~~~~~i~~v~ 519 (1374)
.|+++|+++.|++ .+|+|+||+|++||.++|+||||||||||+++|+|+.+|++|+|.++|.+ ...++.++|||
T Consensus 1 mi~v~nlsk~y~~--~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~ 78 (229)
T d3d31a2 1 MIEIESLSRKWKN--FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (229)
T ss_dssp CEEEEEEEEECSS--CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEECC--EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEEC
T ss_conf 9899989999499--78843378987998999998999829999999964768887889995673465216574056151
Q ss_pred CCCCCCC-CCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 5798986-778897517998876467799888999999769835885099985556899879569999999999715998
Q 000647 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1374)
Q Consensus 520 Q~p~l~~-gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ 598 (1374)
|+|.++. -|++||+.|+..... ....+++.++++.+++.++.++.| ..||||||||++||||++++|+
T Consensus 79 Q~~~l~~~~tV~enl~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSGG~~QRvaiAraL~~~P~ 147 (229)
T d3d31a2 79 QNYSLFPHMNVKKNLEFGMRMKK---IKDPKRVLDTARDLKIEHLLDRNP--------LTLSGGEQQRVALARALVTNPK 147 (229)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHHC---CCCHHHHHHHHHHTTCTTTTTSCG--------GGSCHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHCCHHHHHCCH--------HHCCHHHHCCHHHHHHHHCCCC
T ss_conf 21111746657788888776405---538999999999825655575895--------5479998401403043443677
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEECCCHHHHH-HCCEEEEECCCCCE
Q ss_conf 9998668889999999999999980----5977999905922686-13679981499936
Q 000647 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEW 653 (1374)
Q Consensus 599 iliLDEptSaLD~~~e~~i~~~l~~----~~~TiI~itHr~~~~~-~~d~il~l~~~g~~ 653 (1374)
+++|||||++||+.+...+.+.+++ .|+|+|+|||++.... .+|++++|.+ |..
T Consensus 148 iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~-G~i 206 (229)
T d3d31a2 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMD-GKL 206 (229)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESS-SCE
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEEC-CEE
T ss_conf 14434787679989999999999999864796899974999999996999999979-999
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.4e-38 Score=299.83 Aligned_cols=199 Identities=21% Similarity=0.276 Sum_probs=167.5
Q ss_pred CEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCC--------------
Q ss_conf 299964599869997022310277809988999858999664899987799869954899299884--------------
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------------- 509 (1374)
Q Consensus 444 ~i~~~~v~~~~p~~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~~-------------- 509 (1374)
.|+++|+++.| ++..+|+|+||++++||.++|+||||||||||+++|+|+.+|++|+|.++|.+-
T Consensus 2 ~Lev~nl~k~y-g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~ 80 (258)
T d1b0ua_ 2 KLHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 80 (258)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred EEEEEEEEEEE-CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCCC
T ss_conf 69999789998-99998815066886997999998999829999999974766789977999999336775200002351
Q ss_pred -----CCCCCEEEEECCCCCCC-CCHHHHHCCCC-CCCCCCCCCCHHHHHHHHHHCCCHHH-HHCCCCCCCCCCCCCCCH
Q ss_conf -----43462789915798986-77889751799-88764677998889999997698358-850999855568998795
Q 000647 510 -----DLNKEIFYVPQRPYTAV-GTLRDQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSL 581 (1374)
Q Consensus 510 -----~~~~~i~~v~Q~p~l~~-gTlreni~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~~~~g~~LSg 581 (1374)
..+++++||+|+|.++. -|+.||+.++. ..........++++.++++.+++.+. .++.| ..|||
T Consensus 81 ~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p--------~~LSG 152 (258)
T d1b0ua_ 81 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP--------VHLSG 152 (258)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG--------GGSCH
T ss_pred HHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC--------CCCCH
T ss_conf 7679997454489983323141101021365657876299989999999999998299524430682--------20567
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH---CCCEEEEECCCHHHHH-HCCEEEEECCCCC
Q ss_conf 699999999997159989998668889999999999999980---5977999905922686-1367998149993
Q 000647 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGEGE 652 (1374)
Q Consensus 582 GqkQRlalARal~~~p~iliLDEptSaLD~~~e~~i~~~l~~---~~~TiI~itHr~~~~~-~~d~il~l~~~g~ 652 (1374)
|||||++|||++..+|+++||||||++||+.+...+++.+++ .|+|+|+|||++..+. .||++++|.+ |.
T Consensus 153 G~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~-G~ 226 (258)
T d1b0ua_ 153 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQ-GK 226 (258)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEET-TE
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEEC-CE
T ss_conf 788898999998439987885245556887888899876554103688338994899999986999999979-99
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.1e-38 Score=303.13 Aligned_cols=206 Identities=21% Similarity=0.223 Sum_probs=165.2
Q ss_pred EEEEEEEEECCCC---CCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC------CC
Q ss_conf 8996327847983---33332320888289859997599992999999993689999983865998665434------87
Q 000647 1100 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------GS 1170 (1374)
Q Consensus 1100 I~f~~V~~~yp~~---~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~------~~ 1170 (1374)
|+++||++.|+.. ..+|+|+||+|++||.++|+||||||||||++++.|+.+|++|+|.++|.++.... ..
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred CCCEEEECCCCCCCCC-CHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHH-HHHHCCCCCC
Q ss_conf 6517996398877986-5678751699826899999763068875445677896899999985797023-4311037865
Q 000647 1171 GCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL-LEREEVGWDA 1248 (1374)
Q Consensus 1171 r~~i~~VpQ~P~Lf~G-TiRdNi~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~-~~~~~~Gldt 1248 (1374)
|.+|++|||+|.||+. |++||+.+|... ...... ..+...+++.+.|+.++|.+. ..+.
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~----------~~~~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~------ 142 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIF----------KYRGAM---SGEERRKRALECLKMAELEERFANHK------ 142 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHT----------CCSSCC---CHHHHHHHHHHHHHHTTCCGGGTTCC------
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHH----------HCCCCC---CHHHHHHHHHHHHHHHCHHHHHHCCC------
T ss_conf 55577880412417686688877578887----------224789---99999999999887624234553488------
Q ss_pred CCCCCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 45643589914442103423123577620012120235676304567887662211123368688850568899989999
Q 000647 1249 NLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEE 1328 (1374)
Q Consensus 1249 ~~~~~~~LS~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~ 1328 (1374)
...||||||||+|| ||||..+|++++||||||+||+.+.+
T Consensus 143 ----p~~LSGGqkQRvaI------------------------------------AraL~~~P~lLllDEPTs~LD~~~~~ 182 (230)
T d1l2ta_ 143 ----PNQLSGGQQQRVAI------------------------------------ARALANNPPIILADQPTGALDSKTGE 182 (230)
T ss_dssp ----GGGSCHHHHHHHHH------------------------------------HHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred ----HHHCCHHHHHHHHH------------------------------------HHHHHCCCCEEEECCCCCCCCHHHHH
T ss_conf ----02389999999998------------------------------------75652278889946876546989999
Q ss_pred HHHHHHH----HCCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 9999998----16963999169988442101218987189
Q 000647 1329 QLYRLAK----DMGITFVTSSQRPALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1329 ~l~~~~~----~~~~TvI~IaHR~~~i~~~~~~l~l~~g~ 1364 (1374)
.+.++++ +.|+|+|.|+|++...+++|+++.|.+|+
T Consensus 183 ~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~ 222 (230)
T d1l2ta_ 183 KIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE 222 (230)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTE
T ss_pred HHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCE
T ss_conf 9999999999843999999878889998699899998999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=5.4e-38 Score=301.29 Aligned_cols=200 Identities=20% Similarity=0.240 Sum_probs=170.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEEC
Q ss_conf 78996327847983333323208882898599975999929999999936899999838659986654348765179963
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~~~r~~i~~Vp 1178 (1374)
.|+++|++..|. ...+|+|+||+|++||.++|+|||||||||+++++.|+++|++|+|.++|.|+......+.+|++||
T Consensus 6 ~I~v~nlsk~yg-~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~ 84 (239)
T d1v43a3 6 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 84 (239)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred EEEEEEEEEEEC-CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEEEE
T ss_conf 499987999999-9999813067887998999999999829999999975899987879991641354770001589980
Q ss_pred CCCCCCC-CCHHHHHCCCCCH---HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 9887798-6567875169982---68999997630688754456778968999999857970234311037865456435
Q 000647 1179 QRPYTCL-GTLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 1254 (1374)
Q Consensus 1179 Q~P~Lf~-GTiRdNi~yp~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~~~~~ 1254 (1374)
|+|.+|+ -|++||+.++... +.. ..++.+.++|+.++|.+...+. ..
T Consensus 85 Q~~~l~~~ltv~enl~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~l~~~~~~~----------~~ 135 (239)
T d1v43a3 85 QSYAVWPHMTVYENIAFPLKIKKFPKD-------------------EIDKRVRWAAELLQIEELLNRY----------PA 135 (239)
T ss_dssp C------CCCHHHHHHTTCC--CCCHH-------------------HHHHHHHHHHHHTTCGGGTTSC----------TT
T ss_pred ECHHHCCCCHHHHHHHHHHHHCCCCHH-------------------HHHHHHHHHHHHCCCHHHHCCC----------HH
T ss_conf 033534222099999999987399999-------------------9999999999875985566099----------54
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 89914442103423123577620012120235676304567887662211123368688850568899989999999999
Q 000647 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1334 (1374)
Q Consensus 1255 ~LS~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l~~~~ 1334 (1374)
.||||||||++| ||||..+|++++||||||+||+.+.+.+.+++
T Consensus 136 ~LSGGq~QRvai------------------------------------AraL~~~P~iLllDEPts~LD~~~~~~i~~ll 179 (239)
T d1v43a3 136 QLSGGQRQRVAV------------------------------------ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI 179 (239)
T ss_dssp TCCSSCHHHHHH------------------------------------HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HCCHHHHHHHHH------------------------------------HHHHCCCCCCEEECCCCCCCCHHHHHHHHHHH
T ss_conf 699999889999------------------------------------76640499824306886668989998999999
Q ss_pred H----HCCCEEEEECCCCCCH-HHCCCEEEEECCC
Q ss_conf 8----1696399916998844-2101218987189
Q 000647 1335 K----DMGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1335 ~----~~~~TvI~IaHR~~~i-~~~~~~l~l~~g~ 1364 (1374)
+ +.|+|+|.|+|++..+ +++|+++.|.+|+
T Consensus 180 ~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~ 214 (239)
T d1v43a3 180 KKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQ 214 (239)
T ss_dssp HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 99987319807999489999998699999998999
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-38 Score=304.45 Aligned_cols=202 Identities=19% Similarity=0.336 Sum_probs=170.4
Q ss_pred EEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEECC
Q ss_conf 89963278479833333232088828985999759999299999999368999998386599866543487651799639
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~~~r~~i~~VpQ 1179 (1374)
|+++||++.| +...+|+|+||+|++||.++|+||||||||||++++.|+.+|++|+|.++|.++.+....+.+|++|||
T Consensus 1 Iev~nv~k~y-g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q 79 (232)
T d2awna2 1 VQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 79 (232)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECS
T ss_pred CEEEEEEEEE-CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEECC
T ss_conf 9999999998-999998111778869989999989998299999999658788888899999977888644432223433
Q ss_pred CCCCCCC-CHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 8877986-567875169982689999976306887544567789689999998579702343110378654564358991
Q 000647 1180 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1374)
Q Consensus 1180 ~P~Lf~G-TiRdNi~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~~~~~~LS~ 1258 (1374)
+|.||+. |++||+.+|...... ..+..++.+.++++.++|.+...+. ...|||
T Consensus 80 ~~~l~~~~tv~eni~~~~~~~~~----------------~~~~~~~~v~~~l~~~~l~~~~~~~----------~~~LSG 133 (232)
T d2awna2 80 SYALYPHLSVAENMSFGLKLAGA----------------KKEVINQRVNQVAEVLQLAHLLDRK----------PKALSG 133 (232)
T ss_dssp SCCC-------------------------------------CHHHHHHHHHHHHC-------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHHCCCHHHHHCC----------HHHCCH
T ss_conf 42026433378897899987599----------------8899999999999757886566489----------656999
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH---
Q ss_conf 44421034231235776200121202356763045678876622111233686888505688999899999999998---
Q 000647 1259 GEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK--- 1335 (1374)
Q Consensus 1259 GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l~~~~~--- 1335 (1374)
|||||++| ||||+++|++++|||||++||+.+...+.+.++
T Consensus 134 GqkQRvai------------------------------------AraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~ 177 (232)
T d2awna2 134 GQRQRVAI------------------------------------GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 177 (232)
T ss_dssp ------CH------------------------------------HHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------------------------------------HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999------------------------------------999703998899758887889889989999999998
Q ss_pred -HCCCEEEEECCCCC-CHHHCCCEEEEECCC
Q ss_conf -16963999169988-442101218987189
Q 000647 1336 -DMGITFVTSSQRPA-LIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1336 -~~~~TvI~IaHR~~-~i~~~~~~l~l~~g~ 1364 (1374)
+.|.|+|.|+|++. ...++|+++.|.+|+
T Consensus 178 ~~~g~tii~vTHd~~~a~~~~dri~vm~~G~ 208 (232)
T d2awna2 178 KRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208 (232)
T ss_dssp HHSCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 7429879999489999999699999997999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.5e-38 Score=303.88 Aligned_cols=204 Identities=21% Similarity=0.276 Sum_probs=170.3
Q ss_pred CEEEEEEEEECCCC-CCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC-----CCCCC
Q ss_conf 78996327847983-3333232088828985999759999299999999368999998386599866543-----48765
Q 000647 1099 SISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-----AGSGC 1172 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~-~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~-----~~~r~ 1172 (1374)
.|+++||+..|+.+ ..+|+|+||+|++||.++|+|||||||||+++++.|+.+|++|+|.++|.++... ...|.
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CEEEECCCCCCCCC-CHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCC
Q ss_conf 17996398877986-56787516998268999997630688754456778968999999857970234311037865456
Q 000647 1173 GIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN 1251 (1374)
Q Consensus 1173 ~i~~VpQ~P~Lf~G-TiRdNi~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~~ 1251 (1374)
++++|||+|.||+. |++|||.+|+... +. .....++.+.++++.++|.+...+.|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~----------~~------~~~~~~~~v~~~l~~~gL~~~~~~~p-------- 138 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNM----------KM------SKEEIRKRVEEVAKILDIHHVLNHFP-------- 138 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTS----------SC------CHHHHHHHHHHHHHHTTCGGGTTSCG--------
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHH----------CC------CHHHHHHHHHHHHHHCCHHHHHHCCH--------
T ss_conf 5147730433466665777766556761----------37------99999999999986659176664895--------
Q ss_pred CCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 43589914442103423123577620012120235676304567887662211123368688850568899989999999
Q 000647 1252 WEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLY 1331 (1374)
Q Consensus 1252 ~~~~LS~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l~ 1331 (1374)
..||||||||++| ||||+.+|++++|||||++||+.+...+.
T Consensus 139 --~~LSGGqkQRvai------------------------------------ARaL~~~P~llllDEPt~~LD~~~~~~i~ 180 (242)
T d1oxxk2 139 --RELSGAQQQRVAL------------------------------------ARALVKDPSLLLLDEPFSNLDARMRDSAR 180 (242)
T ss_dssp --GGSCHHHHHHHHH------------------------------------HHHHTTCCSEEEEESTTTTSCGGGHHHHH
T ss_pred --HHCCHHHHHHHHH------------------------------------HHHHHHCCCCEEECCCCCCCCHHHHHHHH
T ss_conf --4599999858998------------------------------------75776046614544786679989988998
Q ss_pred HHHH----HCCCEEEEECCCCCCH-HHCCCEEEEECCC
Q ss_conf 9998----1696399916998844-2101218987189
Q 000647 1332 RLAK----DMGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1332 ~~~~----~~~~TvI~IaHR~~~i-~~~~~~l~l~~g~ 1364 (1374)
++++ +.|.|+|.|+|++..+ .++|+++.|.+|+
T Consensus 181 ~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~ 218 (242)
T d1oxxk2 181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGK 218 (242)
T ss_dssp HHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 99999986359879999799999999699999998999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.8e-38 Score=303.51 Aligned_cols=198 Identities=19% Similarity=0.258 Sum_probs=167.8
Q ss_pred EEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEECC
Q ss_conf 89963278479833333232088828985999759999299999999368999998386599866543487651799639
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 1179 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~~~r~~i~~VpQ 1179 (1374)
|+++||+..|.+ .+|+|+||+|++||.++|+|||||||||++++|.|+.+|++|+|.++|.||.+....|.++++|||
T Consensus 2 i~v~nlsk~y~~--~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q 79 (229)
T d3d31a2 2 IEIESLSRKWKN--FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (229)
T ss_dssp EEEEEEEEECSS--CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred EEEEEEEEEECC--EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEECC
T ss_conf 899989999499--788433789879989999989998299999999647688878899956734652165740561512
Q ss_pred CCCCCCC-CHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 8877986-567875169982689999976306887544567789689999998579702343110378654564358991
Q 000647 1180 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 1258 (1374)
Q Consensus 1180 ~P~Lf~G-TiRdNi~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~~~~~~LS~ 1258 (1374)
+|.||+. |++||+.++... .+ ...++.+.++++.+++.++.++. ...|||
T Consensus 80 ~~~l~~~~tV~enl~~~~~~----------~~---------~~~~~~~~~~l~~~~l~~~~~~~----------~~~LSG 130 (229)
T d3d31a2 80 NYSLFPHMNVKKNLEFGMRM----------KK---------IKDPKRVLDTARDLKIEHLLDRN----------PLTLSG 130 (229)
T ss_dssp TCCCCTTSCHHHHHHHHHHH----------HC---------CCCHHHHHHHHHHTTCTTTTTSC----------GGGSCH
T ss_pred CCCCCCCCCHHHHHHHHHHH----------CC---------CCHHHHHHHHHHHHCCHHHHHCC----------HHHCCH
T ss_conf 11117466577888887764----------05---------53899999999982565557589----------554799
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH---
Q ss_conf 44421034231235776200121202356763045678876622111233686888505688999899999999998---
Q 000647 1259 GEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK--- 1335 (1374)
Q Consensus 1259 GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l~~~~~--- 1335 (1374)
|||||++| ||||+++|++++||||||+||+.+...+.++++
T Consensus 131 G~~QRvai------------------------------------AraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~ 174 (229)
T d3d31a2 131 GEQQRVAL------------------------------------ARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH 174 (229)
T ss_dssp HHHHHHHH------------------------------------HHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHCCHHH------------------------------------HHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98401403------------------------------------043443677144347876799899999999999998
Q ss_pred -HCCCEEEEECCCCCC-HHHCCCEEEEECCC
Q ss_conf -169639991699884-42101218987189
Q 000647 1336 -DMGITFVTSSQRPAL-IPFHSLELRLIDGE 1364 (1374)
Q Consensus 1336 -~~~~TvI~IaHR~~~-i~~~~~~l~l~~g~ 1364 (1374)
+.|.|+|.|+|++.. ...+|+++.|.+|+
T Consensus 175 ~~~g~tii~vtHd~~~~~~~~drv~vm~~G~ 205 (229)
T d3d31a2 175 KKNKLTVLHITHDQTEARIMADRIAVVMDGK 205 (229)
T ss_dssp HHTTCEEEEEESCHHHHHHHCSEEEEESSSC
T ss_pred HCCCCEEEEECCCHHHHHHHCCEEEEEECCE
T ss_conf 6479689997499999999699999997999
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.4e-37 Score=296.40 Aligned_cols=203 Identities=20% Similarity=0.288 Sum_probs=168.3
Q ss_pred CEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC------CCCC
Q ss_conf 7899632784798333332320888289859997599992999999993689999983865998665434------8765
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------GSGC 1172 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~------~~r~ 1172 (1374)
.|+++||+..|. ...+++|+||+|++||.++|+|||||||||+++++.|+.+|++|+|.++|.++...+ ..|.
T Consensus 3 ~i~v~nl~k~yg-~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r 81 (240)
T d1g2912 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (240)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred CEEEEEEEEEEC-CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCCC
T ss_conf 189986999989-9999856066886998999999999809999999964878898989999998035664442453225
Q ss_pred CEEEECCCCCCCCC-CHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCC
Q ss_conf 17996398877986-56787516998268999997630688754456778968999999857970234311037865456
Q 000647 1173 GIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN 1251 (1374)
Q Consensus 1173 ~i~~VpQ~P~Lf~G-TiRdNi~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~~ 1251 (1374)
++++|||+|-||+. |++||+.+|.... +.. .+..++.+.++++.++|.+...+.
T Consensus 82 ~ig~v~Q~~~L~~~ltV~eni~~~~~~~----------~~~------~~e~~~~v~~~l~~~~l~~~~~~~--------- 136 (240)
T d1g2912 82 DIAMVFQSYALYPHMTVYDNIAFPLKLR----------KVP------RQEIDQRVREVAELLGLTELLNRK--------- 136 (240)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHHHT----------TCC------HHHHHHHHHHHHHHHTCGGGTTCC---------
T ss_pred CCEECCCCHHHCCHHHHHHHHHHHHHHC----------CCC------HHHHHHHHHHHHHHCCCHHHHCCC---------
T ss_conf 5120022122231011667633068772----------999------899999999999875996676299---------
Q ss_pred CCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 43589914442103423123577620012120235676304567887662211123368688850568899989999999
Q 000647 1252 WEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLY 1331 (1374)
Q Consensus 1252 ~~~~LS~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l~ 1331 (1374)
...||||||||++| ||||+++|++++|||||++||+.+...+.
T Consensus 137 -p~~LSGGqkQRv~I------------------------------------AraL~~~P~iLllDEPt~~LD~~~~~~i~ 179 (240)
T d1g2912 137 -PRELSGGQRQRVAL------------------------------------GRAIVRKPQVFLMDEPLSNLDAKLRVRMR 179 (240)
T ss_dssp -GGGSCHHHHHHHHH------------------------------------HHHHHTCCSEEEEECTTTTSCHHHHHHHH
T ss_pred -HHHCCHHHHHHHHH------------------------------------HHHHHCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf -33499999999999------------------------------------99982699889825887656989998999
Q ss_pred HHHH----HCCCEEEEECCCCCCH-HHCCCEEEEECCC
Q ss_conf 9998----1696399916998844-2101218987189
Q 000647 1332 RLAK----DMGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1332 ~~~~----~~~~TvI~IaHR~~~i-~~~~~~l~l~~g~ 1364 (1374)
++++ +.|.|+|.|+|++..+ ..+|+++.|.+|+
T Consensus 180 ~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~ 217 (240)
T d1g2912 180 AELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGV 217 (240)
T ss_dssp HHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCE
T ss_conf 99999986369889999599999999699999998999
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.3e-36 Score=288.84 Aligned_cols=201 Identities=19% Similarity=0.243 Sum_probs=163.2
Q ss_pred CCCEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCC------C-CCCC
Q ss_conf 88299964599869997022310277809988999858999664899987799869954899299884------4-3462
Q 000647 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKE 514 (1374)
Q Consensus 442 ~~~i~~~~v~~~~p~~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~~------~-~~~~ 514 (1374)
+..|+++|+++.|. +..+|+|+||++++||.++|+||||||||||+++|+|+.+|++|+|.++|.+- . .+..
T Consensus 4 d~~Lev~~l~k~yg-~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred CEEEEEEEEEEEEC-CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 60799961899989-98888302578889979999999998599999999678888803898424434466088888742
Q ss_pred EEEEECCCCCCC-CCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC-CCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 789915798986-77889751799887646779988899999976-9835885099985556899879569999999999
Q 000647 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV-DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1374)
Q Consensus 515 i~~v~Q~p~l~~-gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARa 592 (1374)
++|+||++.++. -|++||+.++...... ......++.++++.. ++.+..++.+ ..||||||||++||||
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~LSGG~~Qrv~iAra 153 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKD-KEGIKRDLEWIFSLFPRLKERLKQLG--------GTLSGGEQQMLAIGRA 153 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCC-SSHHHHHHHHHHHHCHHHHTTTTSBS--------SSSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCHHHHHHCCH--------HHCCHHHHHHHHHHHH
T ss_conf 35567655457763699999988873278-88999999999987417688875854--------3389999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHH---CCCEEEEECCCHHHH-HHCCEEEEECCCCCE
Q ss_conf 7159989998668889999999999999980---597799990592268-613679981499936
Q 000647 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGEGEW 653 (1374)
Q Consensus 593 l~~~p~iliLDEptSaLD~~~e~~i~~~l~~---~~~TiI~itHr~~~~-~~~d~il~l~~~g~~ 653 (1374)
+.++|+++||||||++||+.+...+++.+++ .|+|+|++||++..+ ..||++++|++ |..
T Consensus 154 L~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~-G~i 217 (240)
T d1ji0a_ 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLET-GQI 217 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEET-TEE
T ss_pred HHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC-CEE
T ss_conf 9829987400398867999999999999999996899899995889999996999999989-999
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.7e-37 Score=292.54 Aligned_cols=202 Identities=19% Similarity=0.225 Sum_probs=169.0
Q ss_pred CCEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCC-----CCCCCCEEE
Q ss_conf 829996459986999702231027780998899985899966489998779986995489929988-----443462789
Q 000647 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFY 517 (1374)
Q Consensus 443 ~~i~~~~v~~~~p~~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~-----~~~~~~i~~ 517 (1374)
+.|+++|++..| +++.+|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|
T Consensus 1 gaI~v~nl~k~y-g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~ 79 (238)
T d1vpla_ 1 GAVVVKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 79 (238)
T ss_dssp CCEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CCEEEEEEEEEE-CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHEEE
T ss_conf 978999589999-9999980625688489799999999999999999996698878887999867244683988721867
Q ss_pred EECCCCCCC-CCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 915798986-7788975179988764677998889999997698358850999855568998795699999999997159
Q 000647 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1374)
Q Consensus 518 v~Q~p~l~~-gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~ 596 (1374)
+||.+.++. -|++||+.|.............+.+.++++.+++.+..++.+ ..||||||||++||||++++
T Consensus 80 vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lSgG~~qrv~iA~al~~~ 151 (238)
T d1vpla_ 80 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV--------STYSKGMVRKLLIARALMVN 151 (238)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBG--------GGCCHHHHHHHHHHHHHTTC
T ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHH--------HHCCHHHHHHHHHHHHHHCC
T ss_conf 5001546878667788898998617998999999999998679788885045--------33799898999999998659
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHH---CCCEEEEECCCHHHHH-HCCEEEEECCCCCEE
Q ss_conf 989998668889999999999999980---5977999905922686-136799814999367
Q 000647 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGEGEWR 654 (1374)
Q Consensus 597 p~iliLDEptSaLD~~~e~~i~~~l~~---~~~TiI~itHr~~~~~-~~d~il~l~~~g~~~ 654 (1374)
|++++|||||++||+.+...+.+.+++ .|+|+|++||+++.+. .||++++|++ |...
T Consensus 152 p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~-G~iv 212 (238)
T d1vpla_ 152 PRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHN-GTIV 212 (238)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEET-TEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC-CEEE
T ss_conf 998873379889798999999999999996599899995989999996999999989-9999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=8.2e-37 Score=292.30 Aligned_cols=200 Identities=24% Similarity=0.316 Sum_probs=165.9
Q ss_pred CEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCC------C-CCCCEE
Q ss_conf 299964599869997022310277809988999858999664899987799869954899299884------4-346278
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIF 516 (1374)
Q Consensus 444 ~i~~~~v~~~~p~~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~~------~-~~~~i~ 516 (1374)
.++++|++..|. +..+|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+- + .+..|+
T Consensus 4 iL~v~nlsk~yg-~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~ 82 (254)
T d1g6ha_ 4 ILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 82 (254)
T ss_dssp EEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred EEEEEEEEEEEC-CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCCC
T ss_conf 699977899979-9688712179988997999999999849999999977976887379999996640569999983387
Q ss_pred EEECCCCCCC-CCHHHHHCCCCCCCCC----------C---CCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 9915798986-7788975179988764----------6---779988899999976983588509998555689987956
Q 000647 517 YVPQRPYTAV-GTLRDQLIYPLTSDQE----------V---EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLG 582 (1374)
Q Consensus 517 ~v~Q~p~l~~-gTlreni~~~~~~~~~----------~---~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgG 582 (1374)
|+||+|.++. -|+.||+.++...... . +....++..++++.+++.+..++.+ ..||||
T Consensus 83 ~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG 154 (254)
T d1g6ha_ 83 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA--------GELSGG 154 (254)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG--------GGSCHH
T ss_pred CCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH--------HHCCCH
T ss_conf 257764247887423214301333034504566542135328999999999987619630205953--------569918
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH---HCCCEEEEECCCHHHH-HHCCEEEEECCCCCE
Q ss_conf 9999999999715998999866888999999999999998---0597799990592268-613679981499936
Q 000647 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALV-AFHDVVLSLDGEGEW 653 (1374)
Q Consensus 583 qkQRlalARal~~~p~iliLDEptSaLD~~~e~~i~~~l~---~~~~TiI~itHr~~~~-~~~d~il~l~~~g~~ 653 (1374)
||||++||||+.++|+++||||||++||+.....+++.++ +.|+|+|+|||+++.+ ..||++++|++ |..
T Consensus 155 ~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~-G~i 228 (254)
T d1g6ha_ 155 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFN-GQI 228 (254)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEET-TEE
T ss_pred HHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC-CEE
T ss_conf 88899999999759272324397656999999999999999997899899994769999986999999969-989
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.3e-38 Score=300.81 Aligned_cols=203 Identities=21% Similarity=0.254 Sum_probs=167.6
Q ss_pred EEEEEEEEECCCCC---CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC-----CCC
Q ss_conf 89963278479833---3332320888289859997599992999999993689999983865998665434-----876
Q 000647 1100 ISFSKLDIITPSQK---LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSG 1171 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~---~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~-----~~r 1171 (1374)
|+++||+..|+.+. .+|+|+||+|++||.++|+||||||||||++++.|+.+|++|+|.++|.|+.+.+ ..|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCEEEECCCCCCCCC-CHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCC
Q ss_conf 517996398877986-5678751699826899999763068875445677896899999985797023431103786545
Q 000647 1172 CGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 1250 (1374)
Q Consensus 1172 ~~i~~VpQ~P~Lf~G-TiRdNi~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~ 1250 (1374)
.++++|||+|-+|+. |++||+.+|.. ..+.. .+...+.+.++|+.++|.+...+.
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~----------~~~~~------~~~~~~~v~~~L~~vgL~~~~~~~-------- 137 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLE----------LDNTP------KDEVKRRVTELLSLVGLGDKHDSY-------- 137 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHH----------TTTCC------TTHHHHHHHHHHHHHSTTTTTSSC--------
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHH----------HCCCC------HHHHHHHHHHHHHHCCCCHHHHCC--------
T ss_conf 166430225222799649999999999----------84999------899999999999976990355489--------
Q ss_pred CCCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 64358991444210342312357762001212023567630456788766221112336868885056889998999999
Q 000647 1251 NWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQL 1330 (1374)
Q Consensus 1251 ~~~~~LS~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l 1330 (1374)
...||||||||+|| ||||..+|++++|||||++||+.+...+
T Consensus 138 --~~~LSGG~~QRvai------------------------------------AraL~~~P~lLllDEPt~~LD~~~~~~i 179 (240)
T d3dhwc1 138 --PSNLSGGQKQRVAI------------------------------------ARALASNPKVLLCDEATSALDPATTRSI 179 (240)
T ss_dssp --BSCCCHHHHHHHHH------------------------------------HHHHHTCCSEEEEESGGGSSCHHHHHHH
T ss_pred --HHHCCHHHHHHHHH------------------------------------HHHHCCCCCEEEECCCCCCCCHHHHHHH
T ss_conf --43499999989998------------------------------------6401058986874465565898885679
Q ss_pred HHHHH----HCCCEEEEECCCCCCHH-HCCCEEEEECCC
Q ss_conf 99998----16963999169988442-101218987189
Q 000647 1331 YRLAK----DMGITFVTSSQRPALIP-FHSLELRLIDGE 1364 (1374)
Q Consensus 1331 ~~~~~----~~~~TvI~IaHR~~~i~-~~~~~l~l~~g~ 1364 (1374)
.++++ +.|.|+|.|+|++..+. ++|+++.|.+|+
T Consensus 180 ~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~ 218 (240)
T d3dhwc1 180 LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE 218 (240)
T ss_dssp HHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCE
T ss_conf 999999986469789998389999998699999997999
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.6e-36 Score=287.40 Aligned_cols=200 Identities=19% Similarity=0.190 Sum_probs=165.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC----------
Q ss_conf 7899632784798333332320888289859997599992999999993689999983865998665434----------
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---------- 1168 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~---------- 1168 (1374)
.|+++||+..| ++..+|+|+||+|++||.+||+||||||||||++++.|+++|.+|+|.++|.+|....
T Consensus 2 ~Lev~nl~k~y-g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~ 80 (258)
T d1b0ua_ 2 KLHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 80 (258)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred EEEEEEEEEEE-CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCCC
T ss_conf 69999789998-99998815066886997999998999829999999974766789977999999336775200002351
Q ss_pred -----CCCCCEEEECCCCCCCCC-CHHHHHCCCC----CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHH
Q ss_conf -----876517996398877986-5678751699----826899999763068875445677896899999985797023
Q 000647 1169 -----GSGCGIFYVPQRPYTCLG-TLRDQIIYPL----SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 1238 (1374)
Q Consensus 1169 -----~~r~~i~~VpQ~P~Lf~G-TiRdNi~yp~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~ 1238 (1374)
..|.++++|||+|.+|+. |+++|+.++. ..... ..++.+.++++.+++.+.
T Consensus 81 ~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~l~~~ 141 (258)
T d1b0ua_ 81 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKH-------------------DARERALKYLAKVGIDER 141 (258)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHH-------------------HHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHH-------------------HHHHHHHHHHHHCCCCHH
T ss_conf 7679997454489983323141101021365657876299989-------------------999999999998299524
Q ss_pred H-HHHCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 4-311037865456435899144421034231235776200121202356763045678876622111233686888505
Q 000647 1239 L-EREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDE 1317 (1374)
Q Consensus 1239 ~-~~~~~Gldt~~~~~~~LS~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDE 1317 (1374)
. .+. ...||||||||++| ||||..+|++++|||
T Consensus 142 ~~~~~----------p~~LSGG~~QRv~i------------------------------------AraL~~~P~llilDE 175 (258)
T d1b0ua_ 142 AQGKY----------PVHLSGGQQQRVSI------------------------------------ARALAMEPDVLLFDE 175 (258)
T ss_dssp HHTSC----------GGGSCHHHHHHHHH------------------------------------HHHHHTCCSEEEEES
T ss_pred HHCCC----------CCCCCHHHHHHHHH------------------------------------HHHHHCCCCEEEECC
T ss_conf 43068----------22056778889899------------------------------------999843998788524
Q ss_pred CCCCCCHHHHHHHHHHHH---HCCCEEEEECCCCCCH-HHCCCEEEEECCC
Q ss_conf 688999899999999998---1696399916998844-2101218987189
Q 000647 1318 CTNATSVDVEEQLYRLAK---DMGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1318 aTSaLD~~~e~~l~~~~~---~~~~TvI~IaHR~~~i-~~~~~~l~l~~g~ 1364 (1374)
||++||+.+.+.+.++++ +.|.|+|.|+|++..+ ..+|+++.|.+|+
T Consensus 176 PT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~ 226 (258)
T d1b0ua_ 176 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 226 (258)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 555688788889987655410368833899489999998699999997999
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=9.3e-36 Score=284.30 Aligned_cols=186 Identities=24% Similarity=0.350 Sum_probs=156.8
Q ss_pred EEEECCCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCC----CCCCCCEEEEECCCCCC
Q ss_conf 59986999702231027780998899985899966489998779986995489929988----44346278991579898
Q 000647 450 VKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQRPYTA 525 (1374)
Q Consensus 450 v~~~~p~~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~----~~~~~~i~~v~Q~p~l~ 525 (1374)
+...+ +...+ |+||++. ++.++|+||||||||||+++|+|+.+|++|+|.++|.+ ...++.|+||||+|.++
T Consensus 7 ~~k~~--g~~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~ 82 (240)
T d2onka1 7 AEKRL--GNFRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALF 82 (240)
T ss_dssp EEEEE--TTEEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCC
T ss_pred EEEEE--CCEEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHC
T ss_conf 99998--99999-9999749-97999997999809999999973999896289999999886998992852252314435
Q ss_pred C-CCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 6-778897517998876467799888999999769835885099985556899879569999999999715998999866
Q 000647 526 V-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1374)
Q Consensus 526 ~-gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~iliLDE 604 (1374)
. -|++||+.||..... ....++++.++++.++|.++.++.| ..||||||||++||||++++|++++|||
T Consensus 83 ~~ltV~enl~~~l~~~~--~~~~~~~v~~~l~~~gl~~~~~~~~--------~~LSGG~kQRvaiAral~~~P~illlDE 152 (240)
T d2onka1 83 PHLSVYRNIAYGLRNVE--RVERDRRVREMAEKLGIAHLLDRKP--------ARLSGGERQRVALARALVIQPRLLLLDE 152 (240)
T ss_dssp TTSCHHHHHHTTCTTSC--HHHHHHHHHHHHHTTTCTTTTTCCG--------GGSCHHHHHHHHHHHHHTTCCSSBEEES
T ss_pred CCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCHHHHHCCH--------HHCCHHHHHHHHHHHHHHCCCCCEEECC
T ss_conf 22015576665323367--7889999999998638375665794--------4489999899999877751677067528
Q ss_pred CCCCCCHHHHHHHHHHHHH----CCCEEEEECCCHHHHH-HCCEEEEECC
Q ss_conf 8889999999999999980----5977999905922686-1367998149
Q 000647 605 CTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1374)
Q Consensus 605 ptSaLD~~~e~~i~~~l~~----~~~TiI~itHr~~~~~-~~d~il~l~~ 649 (1374)
||++||+.+...+.+.+++ .|+|+|+|||++..+. .||++++|++
T Consensus 153 Pts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~ 202 (240)
T d2onka1 153 PLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLN 202 (240)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEET
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf 65558879999999999999874397699981899999996999999989
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.8e-35 Score=280.66 Aligned_cols=215 Identities=20% Similarity=0.276 Sum_probs=164.5
Q ss_pred CEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC---CCCCCEE
Q ss_conf 7899632784798333332320888289859997599992999999993689999983865998665434---8765179
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIF 1175 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~---~~r~~i~ 1175 (1374)
-++++||+.+|. +..+|+|+||+|++||.+||+||||||||||++++.|+++|.+|+|.++|.|+.... ..+.+|+
T Consensus 4 iL~v~nlsk~yg-~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~ 82 (254)
T d1g6ha_ 4 ILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 82 (254)
T ss_dssp EEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred EEEEEEEEEEEC-CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCCC
T ss_conf 699977899979-9688712179988997999999999849999999977976887379999996640569999983387
Q ss_pred EECCCCCCCCC-CHHHHHCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 96398877986-567875169982-6899999763068875445677896899999985797023431103786545643
Q 000647 1176 YVPQRPYTCLG-TLRDQIIYPLSR-EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 1253 (1374)
Q Consensus 1176 ~VpQ~P~Lf~G-TiRdNi~yp~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~~~~ 1253 (1374)
++||+|.+|+. |++||+.++... ............. ........+...++++.+++.....+. .
T Consensus 83 ~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~ 148 (254)
T d1g6ha_ 83 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKW----IPKEEEMVEKAFKILEFLKLSHLYDRK----------A 148 (254)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSS----CCCCHHHHHHHHHHHHHTTCGGGTTSB----------G
T ss_pred CCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCC----CCCHHHHHHHHHHHHHHCCCCHHCCCC----------H
T ss_conf 25776424788742321430133303450456654213----532899999999998761963020595----------3
Q ss_pred CCCCHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 58991444210342312357762001212023567630456788766221112336868885056889998999999999
Q 000647 1254 DILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRL 1333 (1374)
Q Consensus 1254 ~~LS~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l~~~ 1333 (1374)
..||||||||++| ||||.++|++++|||||++||+...+.++++
T Consensus 149 ~~LSgG~~Qrv~i------------------------------------AraL~~~P~llilDEPt~gLD~~~~~~i~~~ 192 (254)
T d1g6ha_ 149 GELSGGQMKLVEI------------------------------------GRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 192 (254)
T ss_dssp GGSCHHHHHHHHH------------------------------------HHHHHTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHH------------------------------------HHHHHHCCCCHHHCCCCCCCCHHHHHHHHHH
T ss_conf 5699188889999------------------------------------9999759272324397656999999999999
Q ss_pred HH---HCCCEEEEECCCCCC-HHHCCCEEEEECCC
Q ss_conf 98---169639991699884-42101218987189
Q 000647 1334 AK---DMGITFVTSSQRPAL-IPFHSLELRLIDGE 1364 (1374)
Q Consensus 1334 ~~---~~~~TvI~IaHR~~~-i~~~~~~l~l~~g~ 1364 (1374)
++ +.|+|+|.|+|++.. ..++|+++.|.+|+
T Consensus 193 i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~ 227 (254)
T d1g6ha_ 193 VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 227 (254)
T ss_dssp HHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTE
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 99999789989999476999998699999996998
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.5e-35 Score=281.02 Aligned_cols=203 Identities=19% Similarity=0.276 Sum_probs=159.3
Q ss_pred CCEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC---CCCCCE
Q ss_conf 97899632784798333332320888289859997599992999999993689999983865998665434---876517
Q 000647 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGI 1174 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~~~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~---~~r~~i 1174 (1374)
--++++|++..| +...+|+|+||+|++||.++|+|||||||||+++++.|+++|.+|+|.++|.|+.... ..|.++
T Consensus 5 ~~Lev~~l~k~y-g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi 83 (240)
T d1ji0a_ 5 IVLEVQSLHVYY-GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred EEEEEEEEEEEE-CCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCC
T ss_conf 079996189998-9988883025788899799999999985999999996788888038984244344660888887423
Q ss_pred EEECCCCCCCCC-CHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC-CCCHHHHHHCCCCCCCCCC
Q ss_conf 996398877986-56787516998268999997630688754456778968999999857-9702343110378654564
Q 000647 1175 FYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGV-RLSYLLEREEVGWDANLNW 1252 (1374)
Q Consensus 1175 ~~VpQ~P~Lf~G-TiRdNi~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v-~L~~~~~~~~~Gldt~~~~ 1252 (1374)
+++||++.+|+. |++||+.++..... ........+..+++.. ++.+.. +. .
T Consensus 84 ~~~~q~~~l~~~ltv~en~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~~~-------~~---~ 136 (240)
T d1ji0a_ 84 ALVPEGRRIFPELTVYENLMMGAYNRK-----------------DKEGIKRDLEWIFSLFPRLKERL-------KQ---L 136 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCC-----------------CSSHHHHHHHHHHHHCHHHHTTT-------TS---B
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCC-----------------CHHHHHHHHHHHHHHHHCHHHHH-------HC---C
T ss_conf 556765545776369999998887327-----------------88899999999998741768887-------58---5
Q ss_pred CCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 35899144421034231235776200121202356763045678876622111233686888505688999899999999
Q 000647 1253 EDILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYR 1332 (1374)
Q Consensus 1253 ~~~LS~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l~~ 1332 (1374)
...||||||||++| ||||.++|++++|||||++||+...+.+.+
T Consensus 137 ~~~LSGG~~Qrv~i------------------------------------AraL~~~P~lLllDEPt~gLD~~~~~~i~~ 180 (240)
T d1ji0a_ 137 GGTLSGGEQQMLAI------------------------------------GRALMSRPKLLMMDEPSLGLAPILVSEVFE 180 (240)
T ss_dssp SSSSCHHHHHHHHH------------------------------------HHHHTTCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred HHHCCHHHHHHHHH------------------------------------HHHHHHCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 43389999999999------------------------------------999982998740039886799999999999
Q ss_pred HHH---HCCCEEEEECCCC-CCHHHCCCEEEEECCC
Q ss_conf 998---1696399916998-8442101218987189
Q 000647 1333 LAK---DMGITFVTSSQRP-ALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1333 ~~~---~~~~TvI~IaHR~-~~i~~~~~~l~l~~g~ 1364 (1374)
+++ +.|.|+|.++|++ ...+.+|+++.|.+|+
T Consensus 181 ~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~ 216 (240)
T d1ji0a_ 181 VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQ 216 (240)
T ss_dssp HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 999999689989999588999999699999998999
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8.9e-35 Score=276.81 Aligned_cols=204 Identities=21% Similarity=0.272 Sum_probs=164.6
Q ss_pred CCEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC-CCCCCCEEE
Q ss_conf 9789963278479833333232088828985999759999299999999368999998386599866543-487651799
Q 000647 1098 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFY 1176 (1374)
Q Consensus 1098 g~I~f~~V~~~yp~~~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~-~~~r~~i~~ 1176 (1374)
|.|+++|++..| +...+|+|+||+|++||.+||+||||||||||+++|.|+++|.+|+|.++|.|+.+. ...|..+++
T Consensus 1 gaI~v~nl~k~y-g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~ 79 (238)
T d1vpla_ 1 GAVVVKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 79 (238)
T ss_dssp CCEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CCEEEEEEEEEE-CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHEEE
T ss_conf 978999589999-9999980625688489799999999999999999996698878887999867244683988721867
Q ss_pred ECCCCCCCCC-CHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 6398877986-567875169982689999976306887544567789689999998579702343110378654564358
Q 000647 1177 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 1255 (1374)
Q Consensus 1177 VpQ~P~Lf~G-TiRdNi~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~~~~~~ 1255 (1374)
|||++.+|+. |++||+.+.... ++.. ....++.+...++.+++.+..... -..
T Consensus 80 vpq~~~~~~~ltv~e~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~~~~~----------~~~ 133 (238)
T d1vpla_ 80 LPEEAGAYRNMQGIEYLRFVAGF----------YASS------SSEIEEMVERATEIAGLGEKIKDR----------VST 133 (238)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHH----------HCCC------HHHHHHHHHHHHHHHCCGGGGGSB----------GGG
T ss_pred EEECCCCCCCCCHHHHHHHHHHH----------CCCC------HHHHHHHHHHHHHHCCCHHHHHHH----------HHH
T ss_conf 50015468786677888989986----------1799------899999999999867978888504----------533
Q ss_pred CCHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99144421034231235776200121202356763045678876622111233686888505688999899999999998
Q 000647 1256 LSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1335 (1374)
Q Consensus 1256 LS~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l~~~~~ 1335 (1374)
||+|||||++| |||++++||+++|||||++||+...+.+.++++
T Consensus 134 lSgG~~qrv~i------------------------------------A~al~~~p~illLDEPt~gLD~~~~~~i~~~i~ 177 (238)
T d1vpla_ 134 YSKGMVRKLLI------------------------------------ARALMVNPRLAILDEPTSGLDVLNAREVRKILK 177 (238)
T ss_dssp CCHHHHHHHHH------------------------------------HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH------------------------------------HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 79989899999------------------------------------999865999887337988979899999999999
Q ss_pred ---HCCCEEEEECCCCCCH-HHCCCEEEEECCC
Q ss_conf ---1696399916998844-2101218987189
Q 000647 1336 ---DMGITFVTSSQRPALI-PFHSLELRLIDGE 1364 (1374)
Q Consensus 1336 ---~~~~TvI~IaHR~~~i-~~~~~~l~l~~g~ 1364 (1374)
+.|.|+|.++|++..+ .++|+++.|.+|+
T Consensus 178 ~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~ 210 (238)
T d1vpla_ 178 QASQEGLTILVSSHNMLEVEFLCDRIALIHNGT 210 (238)
T ss_dssp HHHHTTCEEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred HHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 999659989999598999999699999998999
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=7.4e-35 Score=277.41 Aligned_cols=181 Identities=23% Similarity=0.346 Sum_probs=154.1
Q ss_pred CCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCC-CHHHHHCCCC
Q ss_conf 320888289859997599992999999993689999983865998665434876517996398877986-5678751699
Q 000647 1118 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLG-TLRDQIIYPL 1196 (1374)
Q Consensus 1118 ~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~~~r~~i~~VpQ~P~Lf~G-TiRdNi~yp~ 1196 (1374)
|+||++. +|.++|+|||||||||+++++.|+.+|.+|+|.++|.|+......|.+|++|||+|.+|+. |++||+.+|+
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l 95 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGL 95 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTC
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHHHH
T ss_conf 9999749-979999979998099999999739998962899999998869989928522523144352201557666532
Q ss_pred CH-HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHH
Q ss_conf 82-68999997630688754456778968999999857970234311037865456435899144421034231235776
Q 000647 1197 SR-EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQL 1275 (1374)
Q Consensus 1197 ~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~~~~~~LS~GQrQrlai~~~~~~~~~ 1275 (1374)
.. ...+ .++.+.++++.++|.+...+.| ..||||||||++|
T Consensus 96 ~~~~~~~-------------------~~~~v~~~l~~~gl~~~~~~~~----------~~LSGG~kQRvai--------- 137 (240)
T d2onka1 96 RNVERVE-------------------RDRRVREMAEKLGIAHLLDRKP----------ARLSGGERQRVAL--------- 137 (240)
T ss_dssp TTSCHHH-------------------HHHHHHHHHHTTTCTTTTTCCG----------GGSCHHHHHHHHH---------
T ss_pred CCCCHHH-------------------HHHHHHHHHHHCCCHHHHHCCH----------HHCCHHHHHHHHH---------
T ss_conf 3367788-------------------9999999998638375665794----------4489999899999---------
Q ss_pred HHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH----HCCCEEEEECCCCC-C
Q ss_conf 200121202356763045678876622111233686888505688999899999999998----16963999169988-4
Q 000647 1276 CSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPA-L 1350 (1374)
Q Consensus 1276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l~~~~~----~~~~TvI~IaHR~~-~ 1350 (1374)
|||++++|++++||||||+||+.+...+.++++ +.|+|+|.|+|.+. .
T Consensus 138 ---------------------------Aral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~ 190 (240)
T d2onka1 138 ---------------------------ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA 190 (240)
T ss_dssp ---------------------------HHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH
T ss_pred ---------------------------HHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf ---------------------------87775167706752865558879999999999999874397699981899999
Q ss_pred HHHCCCEEEEECCC
Q ss_conf 42101218987189
Q 000647 1351 IPFHSLELRLIDGE 1364 (1374)
Q Consensus 1351 i~~~~~~l~l~~g~ 1364 (1374)
..++|+++.|.+|+
T Consensus 191 ~~~adri~vm~~G~ 204 (240)
T d2onka1 191 AMLADEVAVMLNGR 204 (240)
T ss_dssp HHHCSEEEEEETTE
T ss_pred HHHCCEEEEEECCE
T ss_conf 99699999998999
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.4e-33 Score=264.78 Aligned_cols=189 Identities=21% Similarity=0.345 Sum_probs=152.0
Q ss_pred CEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCC-CCCCCCEEEEECCC
Q ss_conf 29996459986999702231027780998899985899966489998779986995489929988-44346278991579
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRP 522 (1374)
Q Consensus 444 ~i~~~~v~~~~p~~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~-~~~~~~i~~v~Q~p 522 (1374)
.|+++|+++.| ++++++++||++++|+.++|+||||||||||+++|+|+++|++|+|.++|.+ ...+..++|+||++
T Consensus 2 ~lev~~ls~~y--~~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~ 79 (200)
T d1sgwa_ 2 KLEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 79 (200)
T ss_dssp EEEEEEEEEES--SSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred EEEEEEEEEEE--CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEECC
T ss_conf 59999899993--9928842088985998999999999719999999966205677889999896267367089995013
Q ss_pred CCCC-CCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 8986-778897517998876467799888999999769835885099985556899879569999999999715998999
Q 000647 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1374)
Q Consensus 523 ~l~~-gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~ili 601 (1374)
.++. -|+.+++.+...... ...++.++.++++.+++.++..+ + ..||||||||+++||+++++|+++|
T Consensus 80 ~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~-~--------~~LSgG~~qrv~ia~al~~~~~lll 148 (200)
T d1sgwa_ 80 IVPRKISVEDYLKAVASLYG--VKVNKNEIMDALESVEVLDLKKK-L--------GELSQGTIRRVQLASTLLVNAEIYV 148 (200)
T ss_dssp CCCTTSBHHHHHHHHHHHTT--CCCCHHHHHHHHHHTTCCCTTSB-G--------GGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred CCCCCCCHHHHHHHHHHHCC--CCCCHHHHHHHHHHCCCCCCCCC-C--------CCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 57888289999999997548--86379999999987488563012-6--------8689718888999998864998999
Q ss_pred EECCCCCCCHHHHHHHHHHHHH----CCCEEEEECCCHHHHHHCCEEEEEC
Q ss_conf 8668889999999999999980----5977999905922686136799814
Q 000647 602 LDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLD 648 (1374)
Q Consensus 602 LDEptSaLD~~~e~~i~~~l~~----~~~TiI~itHr~~~~~~~d~il~l~ 648 (1374)
|||||++||.++...+++.+.+ .+.++|+.+|++ .+||.+..+.
T Consensus 149 lDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l---~~~D~~~~l~ 196 (200)
T d1sgwa_ 149 LDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL---SYCDVNENLH 196 (200)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC---TTSSEEEEGG
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECHH---HHCCHHHHEE
T ss_conf 86862016999999999999999867999999991625---4416123401
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.3e-31 Score=252.66 Aligned_cols=187 Identities=21% Similarity=0.264 Sum_probs=154.9
Q ss_pred CEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCC------CCCCCCEEE
Q ss_conf 29996459986999702231027780998899985899966489998779986995489929988------443462789
Q 000647 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1374)
Q Consensus 444 ~i~~~~v~~~~p~~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~------~~~~~~i~~ 517 (1374)
.++++||+.. ..++++||+|++||.++|+||||||||||+++|+|+. +.+|+|.++|.+ .++.....|
T Consensus 3 il~~~dv~~~-----~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~ 76 (231)
T d1l7vc_ 3 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAY 76 (231)
T ss_dssp EEEEEEECCT-----TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEE
T ss_pred EEEEECCCCC-----CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCEE
T ss_conf 9999874157-----1555888899489899999899980999999994887-995599999999986998999864024
Q ss_pred EECCCCC-CCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 9157989-86778897517998876467799888999999769835885099985556899879569999999999715-
Q 000647 518 VPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH- 595 (1374)
Q Consensus 518 v~Q~p~l-~~gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~- 595 (1374)
++|+... +..++.+++.+.... ....+.+.++++.+++.+..++.+ ..||||||||+++||++++
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~--------~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 77 LSQQQTPPFATPVWHYLTLHQHD-----KTRTELLNDVAGALALDDKLGRST--------NQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp ECSCCCCCSSCBHHHHHHHHCSC-----TTCHHHHHHHHHHTTCTTTTTSBG--------GGCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCHHHHHHHCCCH-----HHHHHHHHHHHHHCCCHHHHCCCH--------HHCCHHHHHHHHHHHHHHHH
T ss_conf 51213577442098876410014-----668999999998659876767684--------45699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHH---HCCCEEEEECCCHHH-HHHCCEEEEECC
Q ss_conf ------998999866888999999999999998---059779999059226-861367998149
Q 000647 596 ------KPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPAL-VAFHDVVLSLDG 649 (1374)
Q Consensus 596 ------~p~iliLDEptSaLD~~~e~~i~~~l~---~~~~TiI~itHr~~~-~~~~d~il~l~~ 649 (1374)
+|++++|||||++||......+++.++ +.|+|+|+++|+++. ..++|++++|++
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~ 207 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKG 207 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEET
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf 7133899889997187777898999999999999986799999996779999997999999979
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=1.8e-31 Score=251.72 Aligned_cols=189 Identities=19% Similarity=0.300 Sum_probs=149.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEEC
Q ss_conf 78996327847983333323208882898599975999929999999936899999838659986654348765179963
Q 000647 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178 (1374)
Q Consensus 1099 ~I~f~~V~~~yp~~~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~~~r~~i~~Vp 1178 (1374)
.|+++|+++.|. ++||+|+||+|++||.++|+||||||||||++++.|+++|.+|+|.++|.++... +.+++++|
T Consensus 2 ~lev~~ls~~y~--~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~---~~~i~~~~ 76 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV---KGKIFFLP 76 (200)
T ss_dssp EEEEEEEEEESS--SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGG---GGGEEEEC
T ss_pred EEEEEEEEEEEC--CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHH---CCCEEEEE
T ss_conf 599998999939--9288420889859989999999997199999999662056778899998962673---67089995
Q ss_pred CCCCCCCC-CHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 98877986-56787516998268999997630688754456778968999999857970234311037865456435899
Q 000647 1179 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 1257 (1374)
Q Consensus 1179 Q~P~Lf~G-TiRdNi~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~~~~~~LS 1257 (1374)
|++.++.. |+++|+.+.. ..++ ....++++.+.++.+++.++ +.. -..||
T Consensus 77 ~~~~~~~~~t~~~~l~~~~----------~~~~--------~~~~~~~~~~~l~~~~~~~~--------~~~---~~~LS 127 (200)
T d1sgwa_ 77 EEIIVPRKISVEDYLKAVA----------SLYG--------VKVNKNEIMDALESVEVLDL--------KKK---LGELS 127 (200)
T ss_dssp SSCCCCTTSBHHHHHHHHH----------HHTT--------CCCCHHHHHHHHHHTTCCCT--------TSB---GGGSC
T ss_pred ECCCCCCCCCHHHHHHHHH----------HHCC--------CCCCHHHHHHHHHHCCCCCC--------CCC---CCCCC
T ss_conf 0135788828999999999----------7548--------86379999999987488563--------012---68689
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH--
Q ss_conf 144421034231235776200121202356763045678876622111233686888505688999899999999998--
Q 000647 1258 LGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLAK-- 1335 (1374)
Q Consensus 1258 ~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l~~~~~-- 1335 (1374)
+|||||+++ |||++++|++++|||||++||+++...+.+.+.
T Consensus 128 gG~~qrv~i------------------------------------a~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~ 171 (200)
T d1sgwa_ 128 QGTIRRVQL------------------------------------ASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEI 171 (200)
T ss_dssp HHHHHHHHH------------------------------------HHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred CCHHHHHHH------------------------------------HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 718888999------------------------------------99886499899986862016999999999999999
Q ss_pred --HCCCEEEEECCCCCCHHHCCCEEEE
Q ss_conf --1696399916998844210121898
Q 000647 1336 --DMGITFVTSSQRPALIPFHSLELRL 1360 (1374)
Q Consensus 1336 --~~~~TvI~IaHR~~~i~~~~~~l~l 1360 (1374)
+.+.++|+..|.+ .++|...++
T Consensus 172 ~~~~~~~ii~~~~~l---~~~D~~~~l 195 (200)
T d1sgwa_ 172 LKEKGIVIISSREEL---SYCDVNENL 195 (200)
T ss_dssp HHHHSEEEEEESSCC---TTSSEEEEG
T ss_pred HHCCCEEEEEEECHH---HHCCHHHHE
T ss_conf 867999999991625---441612340
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=2.1e-30 Score=243.49 Aligned_cols=192 Identities=21% Similarity=0.268 Sum_probs=152.9
Q ss_pred EEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC--CCCCCEEEE
Q ss_conf 899632784798333332320888289859997599992999999993689999983865998665434--876517996
Q 000647 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYV 1177 (1374)
Q Consensus 1100 I~f~~V~~~yp~~~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~--~~r~~i~~V 1177 (1374)
++++||+..| +|+++||+|++||.+||+|||||||||++++|.|+.+ .+|+|.++|.++.... ..+...+++
T Consensus 4 l~~~dv~~~~-----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~-~~G~I~~~g~~i~~~~~~~~~~~~~~~ 77 (231)
T d1l7vc_ 4 MQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYL 77 (231)
T ss_dssp EEEEEECCTT-----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC-CSSEEEESSSBGGGSCHHHHHHHEEEE
T ss_pred EEEECCCCCC-----EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC-CCEEEEECCEECCCCCHHHHHHHCEEE
T ss_conf 9998741571-----5558888994898999998999809999999948879-955999999999869989998640245
Q ss_pred CCCCCC-CCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 398877-9865678751699826899999763068875445677896899999985797023431103786545643589
Q 000647 1178 PQRPYT-CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 1256 (1374)
Q Consensus 1178 pQ~P~L-f~GTiRdNi~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~~~~~~L 1256 (1374)
+|++.. |..++.+++...... ....+.+.++++.+++.+.+.+. ...|
T Consensus 78 ~~~~~~~~~~~v~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~~~~~----------~~~L 126 (231)
T d1l7vc_ 78 SQQQTPPFATPVWHYLTLHQHD---------------------KTRTELLNDVAGALALDDKLGRS----------TNQL 126 (231)
T ss_dssp CSCCCCCSSCBHHHHHHHHCSC---------------------TTCHHHHHHHHHHTTCTTTTTSB----------GGGC
T ss_pred ECCCCCCCCCCHHHHHHHCCCH---------------------HHHHHHHHHHHHHCCCHHHHCCC----------HHHC
T ss_conf 1213577442098876410014---------------------66899999999865987676768----------4456
Q ss_pred CHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC-------CCCEEEEECCCCCCCHHHHHH
Q ss_conf 9144421034231235776200121202356763045678876622111233-------686888505688999899999
Q 000647 1257 SLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFH-------KPKFGILDECTNATSVDVEEQ 1329 (1374)
Q Consensus 1257 S~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr-------~pkillLDEaTSaLD~~~e~~ 1329 (1374)
|||||||+++ |||+++ +|++++|||||++||+.....
T Consensus 127 SgG~~Qrv~i------------------------------------A~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~ 170 (231)
T d1l7vc_ 127 SGGEWQRVRL------------------------------------AAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSA 170 (231)
T ss_dssp CHHHHHHHHH------------------------------------HHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHH
T ss_pred CHHHHHHHHH------------------------------------HHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHH
T ss_conf 9988999999------------------------------------9999851713389988999718777789899999
Q ss_pred HHHHHH---HCCCEEEEECCCC-CCHHHCCCEEEEECCC
Q ss_conf 999998---1696399916998-8442101218987189
Q 000647 1330 LYRLAK---DMGITFVTSSQRP-ALIPFHSLELRLIDGE 1364 (1374)
Q Consensus 1330 l~~~~~---~~~~TvI~IaHR~-~~i~~~~~~l~l~~g~ 1364 (1374)
+.++++ ..|+|+|.++|++ ...+++|+++.|.+|+
T Consensus 171 i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~ 209 (231)
T d1l7vc_ 171 LDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGK 209 (231)
T ss_dssp HHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTE
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 999999998679999999677999999799999997998
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.83 E-value=4e-15 Score=127.16 Aligned_cols=316 Identities=14% Similarity=0.136 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68899999997205450359999999999999999999999888999999982-49138999999999999999999999
Q 000647 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFL-RRVPLFFQLISENILLCFLLSTMHST 163 (1374)
Q Consensus 85 ~~~l~~Ll~i~~p~~~~~~~~~l~~~~~l~v~~t~ls~~~~~~~g~~~~al~~-~~~~~f~~~l~~~~~~~~~~~~~~~~ 163 (1374)
||-+++|++.+.|++. .++..+++.++.+.++...+.+.+.++|.+.. ++...+... .+..+...++...
T Consensus 1 Wk~~krl~~~~~~~k~-----~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~----~~~~~~~~~~~~i 71 (319)
T d3b60a2 1 WQTFRRLWPTIAPFKA-----GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWM----PLVVIGLMILRGI 71 (319)
T ss_dssp CHHHHHHHHHHGGGHH-----HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHS----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH----HHHHHHHHHHHHH
T ss_conf 9689999999999999-----999999999999999999999999999987446877899999----9999999997645
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999998411004434104899-9992579881199999999999998799999999999999
Q 000647 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1374)
Q Consensus 164 ~~yl~~~l~~~~R~~Lt~~l~~~yl~~~~~y~l~~~d~~-~~npdqRIt~Di~~~~~~~~~l~~~~l~~~l~~~~~~~~l 242 (1374)
..|+...+..++..++...++.+.+++....+.+++++. .++..+|+++|++.+.+.+.......+..++..+. ....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~-~~~~ 150 (319)
T d3b60a2 72 TSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIG-LFIM 150 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHH
T ss_conf 335466544343100011000477776501011110233322111112121210000111112001123344566-8888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 98613669999999999999999999699999999999999999999999999499999818849999999999999999
Q 000647 243 CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1374)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~~i~~~i~~~l~~l~~~~~~~e~~~r~~~~~ir~naE~Ia~~~ge~~E~~~l~~~f~~l~~ 322 (1374)
+.+.+|.+++++++..++...+.....++..+...+.++.+++..........+.+.|+.++.|+.+.+++++..++..+
T Consensus 151 ~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~ 230 (319)
T d3b60a2 151 MFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRL 230 (319)
T ss_dssp HHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHH
T ss_conf 87652002102566899999988766668778789887644567788777624872353111010245666665313567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999899888886653620442578651458999999999999999999999999999999
Q 000647 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1374)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~p~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 402 (1374)
...+..+..........+.. .+.. ..+++...+ ....+..+.|.. +. +..++.....++..+......
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~l~~g~~---~~~~g~it~g~l--~~----~~~~~~~~~~pl~~l~~~~~~ 298 (319)
T d3b60a2 231 QGMKMVSASSISDPIIQLIA-SLAL--AFVLYAASF---PSVMDSLTAGTI--TV----VFSSMIALMRPLKSLTNVNAQ 298 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHS---SSTTSSSHHHHH--HH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHH-HHHH--HHHHHHHHH---HHHCCCCCHHHH--HH----HHHHHHHHHHHHHHHHHHHHH
T ss_conf 78888877774064010000-0023--799999999---998099789999--99----999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999853000
Q 000647 403 LNRLSGYADRIHELMVISRE 422 (1374)
Q Consensus 403 l~~l~~~~~Ri~el~~~~~~ 422 (1374)
+.+...+.+|+.|++|.++|
T Consensus 299 ~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 299 FQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999669989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.80 E-value=6e-15 Score=125.78 Aligned_cols=316 Identities=10% Similarity=0.058 Sum_probs=200.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHH-HHHHHHHHHH
Q ss_conf 9999999720545035999999999999999999999988899999998249138---99999999999-9999999999
Q 000647 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPL---FFQLISENILL-CFLLSTMHST 163 (1374)
Q Consensus 88 l~~Ll~i~~p~~~~~~~~~l~~~~~l~v~~t~ls~~~~~~~g~~~~al~~~~~~~---f~~~l~~~~~~-~~~~~~~~~~ 163 (1374)
+++|++++.|+++ .++..+++.++.+.+++..+.+.+.++|.+..++... ....+.....+ .+...++...
T Consensus 2 lKrl~~~~k~~k~-----~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (323)
T d2hyda2 2 IKRYLQFVKPYKY-----RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPP 76 (323)
T ss_dssp HHHHHHHHGGGHH-----HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999-----99999999999999999999999999999862677421556899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999998411004434104899-9992579881199999999999998799999999999999
Q 000647 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1374)
Q Consensus 164 ~~yl~~~l~~~~R~~Lt~~l~~~yl~~~~~y~l~~~d~~-~~npdqRIt~Di~~~~~~~~~l~~~~l~~~l~~~~~~~~l 242 (1374)
..|+...+..+...++..+++.+.+++....+.+++++. .++..+|+++|++.+.+.....+...+..++..+.. +..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~-~~~ 155 (323)
T d2hyda2 77 IEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIA-LSI 155 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHH-HHH
T ss_conf 9999999999999855677888876654023321000122211000111133210011134542011146653346-544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 98613669999999999999999999699999999999999999999999999499999818849999999999999999
Q 000647 243 CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1374)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~~i~~~i~~~l~~l~~~~~~~e~~~r~~~~~ir~naE~Ia~~~ge~~E~~~l~~~f~~l~~ 322 (1374)
+.+.+|.++++.++..++...+...+++...+...+.++..++..........+.++|+.++.|+.+.+++++..++..+
T Consensus 156 l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~ 235 (323)
T d2hyda2 156 MFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLT 235 (323)
T ss_dssp HHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCC
T ss_conf 00001468889999887777777641233320267789899999978788755970234676411100233022311110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999899888886653620442578651458999999999999999999999999999999
Q 000647 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1374)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~p~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 402 (1374)
...+..+..........++. .+...+.+.+....+..|.+ +.|.... +..++.....++..+...+..
T Consensus 236 ~~~k~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~g~~-----s~g~l~~------~~~~~~~l~~~l~~l~~~~~~ 303 (323)
T d2hyda2 236 RALKHTRWNAYSFAAINTVT-DIGPIIVIGVGAYLAISGSI-----TVGTLAA------FVGYLELLFGPLRRLVASFTT 303 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTSC-----CHHHHHH------HHHTHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCC-HHHHHHHHHHHHHHHHCCCC-----CHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_conf 15677652000011111012-05589999999999984998-----8999999------999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999985300
Q 000647 403 LNRLSGYADRIHELMVISR 421 (1374)
Q Consensus 403 l~~l~~~~~Ri~el~~~~~ 421 (1374)
+.+...+.+|+.|++|.++
T Consensus 304 ~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 304 LTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999977999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.28 E-value=1.3e-13 Score=115.58 Aligned_cols=145 Identities=12% Similarity=0.046 Sum_probs=94.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCC-CCCCCEEEEEC-----CCCCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 8999858999664899987799869954899299884-43462789915-----79898677889751799887646779
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-DLNKEIFYVPQ-----RPYTAVGTLRDQLIYPLTSDQEVEPL 546 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~~-~~~~~i~~v~Q-----~p~l~~gTlreni~~~~~~~~~~~~~ 546 (1374)
+++|+||||||||||++.++|.+++..|.+..++... ....+.++..+ .+++...........
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 70 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLV----------- 70 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEE-----------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443-----------
Q ss_pred CHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC--CHHHHHHHHHHHHHC
Q ss_conf 988899999976983588509998555689987956999999999971599899986688899--999999999999805
Q 000647 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV--TTDMEERFCAKVRAM 624 (1374)
Q Consensus 547 ~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~iliLDEptSaL--D~~~e~~i~~~l~~~ 624 (1374)
++...+. ....+++|+++|.++++++.++|+++++|||.... +.+....+.+.++..
T Consensus 71 ------------------~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~ 129 (178)
T d1ye8a1 71 ------------------GSYGVNV---QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDP 129 (178)
T ss_dssp ------------------TTEEECH---HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCT
T ss_pred ------------------HHHHCCC---CHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf ------------------0230376---2566532013789999997409974230277731004579999999875057
Q ss_pred CCEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 9779999059226861367998149
Q 000647 625 GTSCITISHRPALVAFHDVVLSLDG 649 (1374)
Q Consensus 625 ~~TiI~itHr~~~~~~~d~il~l~~ 649 (1374)
+.++|.++|+......++++..+++
T Consensus 130 ~~~il~~~h~~~~~~~~~~i~~~~~ 154 (178)
T d1ye8a1 130 NVNVVATIPIRDVHPLVKEIRRLPG 154 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTCTT
T ss_pred CCEEEEEECCHHHHHHHCEEEEEEC
T ss_conf 9789999744778986365998719
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.25 E-value=1.2e-13 Score=115.96 Aligned_cols=146 Identities=13% Similarity=0.067 Sum_probs=96.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCC---EEEECCCCCCCCCCHHHHHCCCCCHHHHHHH
Q ss_conf 5999759999299999999368999998386599866543487651---7996398877986567875169982689999
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG---IFYVPQRPYTCLGTLRDQIIYPLSREEAELR 1204 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~~~r~~---i~~VpQ~P~Lf~GTiRdNi~yp~~~~~~~~~ 1204 (1374)
||+|+||+|||||||++.+.+.+++..|.+..++.+..... .+.. ..+.++.+.++..+...+....
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK-KRTGFRIITTEGKKKIFSSKFFTSKKLVG--------- 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-------CCEEEEEETTCCEEEEEETTCCCSSEET---------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 89999899938999999998148888646998771328888-76531123366777887541134554430---------
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCH
Q ss_conf 97630688754456778968999999857970234311037865456435899144421034231235776200121202
Q 000647 1205 ALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMVSHLVLIQLCSINKISEL 1284 (1374)
Q Consensus 1205 ~~~~~~~~~~~~~~~~~~d~~l~~~L~~v~L~~~~~~~~~Gldt~~~~~~~LS~GQrQrlai~~~~~~~~~~~~~~~~~~ 1284 (1374)
+ .+.+.. ...+|+|++|+.++
T Consensus 72 ------------------------------------~--~~~~~~---~~~~~~~~~~~~~l------------------ 92 (178)
T d1ye8a1 72 ------------------------------------S--YGVNVQ---YFEELAIPILERAY------------------ 92 (178)
T ss_dssp ------------------------------------T--EEECHH---HHHHHHHHHHHHHH------------------
T ss_pred ------------------------------------H--HHCCCC---HHHHHHHHHHHHHH------------------
T ss_conf ------------------------------------2--303762---56653201378999------------------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC--CHHHHHHHHHHHHHCCCEEEEECCCCCCHHHCCCEEEE
Q ss_conf 35676304567887662211123368688850568899--98999999999981696399916998844210121898
Q 000647 1285 DWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNAT--SVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRL 1360 (1374)
Q Consensus 1285 ~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaL--D~~~e~~l~~~~~~~~~TvI~IaHR~~~i~~~~~~l~l 1360 (1374)
++++.++|+++++||++... +.+..+.+.+.+...+.|+|.++|+....+..+++..+
T Consensus 93 ------------------~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i~~~ 152 (178)
T d1ye8a1 93 ------------------REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp ------------------HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred ------------------HHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCEEEEE
T ss_conf ------------------999740997423027773100457999999987505797899997447789863659987
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.74 E-value=1.2e-05 Score=54.93 Aligned_cols=257 Identities=13% Similarity=0.158 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf 98799999999999999999899899999999999999999999999751488-62333137899999866047999999
Q 000647 793 DKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKL 871 (1374)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ll~~~l~~~-~f~~~~~~~~~~~~~~~ri~~D~~~l 871 (1374)
+........+..++..++..+......+...+.+.+...++..++++++++.+ .||+..+. .+..+|++.|++.+
T Consensus 51 ~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~----g~~~~~~~~d~~~~ 126 (319)
T d3b60a2 51 DRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQST----GTLLSRITYDSEQV 126 (319)
T ss_dssp THHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCH----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCC----CCCCCCCCCCCCCC
T ss_conf 77899999999999999764533546654434310001100047777650101111023332----21111121212100
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999887775686999-------99999999995213479999999999999999852761000289876101236899
Q 000647 872 TTDLSGLVTGMVKPSVD-------ILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMH 944 (1374)
Q Consensus 872 ~~~l~~l~~~~v~~~i~-------~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~ 944 (1374)
...+......++..++. +.+..|.+.++.. ..++.+. .......+.......+..+..+......
T Consensus 127 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (319)
T d3b60a2 127 ASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILV----VLAPIVS----IAIRVVSKRFRSISKNMQNTMGQVTTSA 198 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH----HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH----HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0011111200112334456688888765200210256----6899999----9887666687787898876445677887
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 99987578766029917999999999999999999999999785557789982103488988999998630264012210
Q 000647 945 ERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVST 1024 (1374)
Q Consensus 945 ~~l~~~~esia~~~g~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 1024 (1374)
.....+.+.+..++.+..+.+.+++...+..+......+.......... +.........++++...... +.+ +
T Consensus 199 ~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~g~~~~~~-g~i-t 271 (319)
T d3b60a2 199 EQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQ-----LIASLALAFVLYAASFPSVM-DSL-T 271 (319)
T ss_dssp HHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHSSSTT-SSS-H
T ss_pred HHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHHHHHHHHHC-CCC-C
T ss_conf 7762487235311101024566666531356778888877774064010-----00000237999999999980-997-8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 357999999999999999987999999999999998799779999999
Q 000647 1025 QGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEEL 1072 (1374)
Q Consensus 1025 ~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~~ 1072 (1374)
.|.+... .....+...++..+......+.+...+.+|+.++.+.
T Consensus 272 ~g~l~~~----~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~ 315 (319)
T d3b60a2 272 AGTITVV----FSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 315 (319)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999----9999999999999999999999999999999999669
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.63 E-value=2.5e-05 Score=52.56 Aligned_cols=235 Identities=14% Similarity=0.104 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH------
Q ss_conf 99899899999999999999999999999751488-62333137899999866047999999999998877756------
Q 000647 811 SSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMV------ 883 (1374)
Q Consensus 811 ~~~~~~~~~~~~~~l~~~~~~~l~~~ll~~~l~~~-~f~~~~~~~~~~~~~~~ri~~D~~~l~~~l~~l~~~~v------ 883 (1374)
..+......++..+.+.+....+..++++++++.+ .||+..+ .++..+|++.|++.+.......+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~----~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~ 149 (323)
T d2hyda2 74 RPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQ----VGQVISRVINDVEQTKDFILTGLMNIWLDCITI 149 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSC----HHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHH
T ss_conf 9999999999999999855677888876654023321000122----211000111133210011134542011146653
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCH
Q ss_conf -869999999999999521347999999999999999985276100028987610123-689999987578766029917
Q 000647 884 -KPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTF-RFMHERLRAHAESVAFFGGGA 961 (1374)
Q Consensus 884 -~~~i~~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~~l~~~~esia~~~g~~ 961 (1374)
..++.+.+..|.++.+... ....+......+.+ .......+..+..+.. ....+.+ .+.+.+..++.+.
T Consensus 150 i~~~~~l~~~~~~l~li~l~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~e~~-~~~~~Ik~~~~e~ 220 (323)
T d2hyda2 150 IIALSIMFFLDVKLTLAALF----IFPFYILTVYVFFG----RLRKLTRERSQALAEVQGFLHERV-QGISVVKSFAIED 220 (323)
T ss_dssp HHHHHHHHHHCTTTHHHHTT----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHC
T ss_conf 34654400001468889999----88777777764123----332026778989999997878875-5970234676411
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999978555778998210348898899999863--0264012210357999999999999
Q 000647 962 REKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME--HKGDRALVSTQGELAHALRFLASVV 1039 (1374)
Q Consensus 962 ~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~--~~~~~~~~~~~~~~~~a~~~~a~~~ 1039 (1374)
.+.+.+++...+..+......+.......... +...+...+.++++.. ..|.. +.|.+... ....
T Consensus 221 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~g~~----s~g~l~~~----~~~~ 287 (323)
T d2hyda2 221 NEAKNFDKKNTNFLTRALKHTRWNAYSFAAIN-----TVTDIGPIIVIGVGAYLAISGSI----TVGTLAAF----VGYL 287 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHTSC----CHHHHHHH----HHTH
T ss_pred CCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC-----CCCHHHHHHHHHHHHHHHHCCCC----CHHHHHHH----HHHH
T ss_conf 10023302231111015677652000011111-----01205589999999999984998----89999999----9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998799999999999999879977999999
Q 000647 1040 SQSFLAFGDILELHRKFVELSGGINRIFELEE 1071 (1374)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~~~~~~Ri~~l~~ 1071 (1374)
.+...++..+.+....+.+...+.+|+.++.+
T Consensus 288 ~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 288 ELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999999999999977
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=1.5e-06 Score=61.91 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=59.3
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 89914442103423123577620012120235676304567887662211123368688850568899989999999999
Q 000647 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1334 (1374)
Q Consensus 1255 ~LS~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l~~~~ 1334 (1374)
.+|||||.+++++ +.+ |-....+++|++|||++++||......+.+++
T Consensus 332 ~lSgGEk~~~~la--l~l------------------------------al~~~~~~pililDE~d~~Ld~~~~~~~~~~l 379 (427)
T d1w1wa_ 332 YLSGGEKTVAALA--LLF------------------------------AINSYQPSPFFVLDEVDAALDITNVQRIAAYI 379 (427)
T ss_dssp GSCHHHHHHHHHH--HHH------------------------------HHHTSSCCSEEEESSTTTTCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHH--HHH------------------------------HHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 3223047999999--999------------------------------99547999779996887778999999999999
Q ss_pred HH---CCCEEEEECCCCCCHHHCCCEEEEE-CCCCC
Q ss_conf 81---6963999169988442101218987-18988
Q 000647 1335 KD---MGITFVTSSQRPALIPFHSLELRLI-DGEGN 1366 (1374)
Q Consensus 1335 ~~---~~~TvI~IaHR~~~i~~~~~~l~l~-~g~g~ 1366 (1374)
.. .+.-+|+|||.+.++...|.+.... .++++
T Consensus 380 ~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V~~~~~~g 415 (427)
T d1w1wa_ 380 RRHRNPDLQFIVISLKNTMFEKSDALVGVYRQQQEN 415 (427)
T ss_dssp HHHCBTTBEEEEECSCHHHHTTCSEEEEEEEETTTT
T ss_pred HHHHCCCCEEEEEECCHHHHHHCCCEEEEEEECCCC
T ss_conf 997289988999958789997366179999927998
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.87 E-value=2.1e-05 Score=53.04 Aligned_cols=71 Identities=28% Similarity=0.403 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHCCEEEEE
Q ss_conf 98795699999999997----159989998668889999999999999980---597799990592268613679981
Q 000647 577 DELSLGEQQRLGMARLF----YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSL 647 (1374)
Q Consensus 577 ~~LSgGqkQRlalARal----~~~p~iliLDEptSaLD~~~e~~i~~~l~~---~~~TiI~itHr~~~~~~~d~il~l 647 (1374)
..||||||.++++|-.+ +.++++++||||+++||......+.+.+++ .+.-+|++||++.....+|+++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.49 E-value=0.00073 Score=41.35 Aligned_cols=70 Identities=29% Similarity=0.359 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHCCEEEEE
Q ss_conf 879569999999999----7159989998668889999999999999980--597799990592268613679981
Q 000647 578 ELSLGEQQRLGMARL----FYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSL 647 (1374)
Q Consensus 578 ~LSgGqkQRlalARa----l~~~p~iliLDEptSaLD~~~e~~i~~~l~~--~~~TiI~itHr~~~~~~~d~il~l 647 (1374)
.+|+|||+...++.. ....|.+++.|||-++|++.....+.+.+++ .+.-+|++||.+.++...|+++.+
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v 294 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGV 294 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 0257776677777665565422674455432033579789999999999855488799998988999732428999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.13 E-value=0.0069 Score=33.94 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=35.3
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHH----HHHHHHCCCEEEEECCCHHHHHH
Q ss_conf 159989998668889999999999----99998059779999059226861
Q 000647 594 YHKPKFAILDECTSAVTTDMEERF----CAKVRAMGTSCITISHRPALVAF 640 (1374)
Q Consensus 594 ~~~p~iliLDEptSaLD~~~e~~i----~~~l~~~~~TiI~itHr~~~~~~ 640 (1374)
..+..++++||...+-+++-...+ .+.+.+.+..++++||..++...
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l 162 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL 162 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred CCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHHH
T ss_conf 897727855454568623320025888888886237613786520233322
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.08 E-value=0.0031 Score=36.59 Aligned_cols=85 Identities=20% Similarity=0.222 Sum_probs=64.2
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 89914442103423123577620012120235676304567887662211123368688850568899989999999999
Q 000647 1255 ILSLGEQQRLGMVSHLVLIQLCSINKISELDWLIYCCLTLFFPPFSYKARLFFHKPKFGILDECTNATSVDVEEQLYRLA 1334 (1374)
Q Consensus 1255 ~LS~GQrQrlai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ARallr~pkillLDEaTSaLD~~~e~~l~~~~ 1334 (1374)
.+|.|||+++.++..+ +.....+|.+++.||+-++|++.....+.+.+
T Consensus 219 ~~~~g~~~l~~~~~~~--------------------------------~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l 266 (308)
T d1e69a_ 219 LLSGGEKALVGLALLF--------------------------------ALMEIKPSPFYVLDEVDSPLDDYNAERFKRLL 266 (308)
T ss_dssp GSCHHHHHHHHHHHHH--------------------------------HHTTTSCCSEEEEESCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------------------------------HHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 0257776677777665--------------------------------56542267445543203357978999999999
Q ss_pred HH--CCCEEEEECCCCCCHHHCCCEEEEECCCCCEEEEE
Q ss_conf 81--69639991699884421012189871898849971
Q 000647 1335 KD--MGITFVTSSQRPALIPFHSLELRLIDGEGNWELRT 1371 (1374)
Q Consensus 1335 ~~--~~~TvI~IaHR~~~i~~~~~~l~l~~g~g~~~~~~ 1371 (1374)
+. .+.-+|+++|++.+++..|++..+...+|--.+-+
T Consensus 267 ~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~g~s~i~~ 305 (308)
T d1e69a_ 267 KENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVP 305 (308)
T ss_dssp HHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEE
T ss_pred HHHCCCCEEEEEECCHHHHHHCCCEEEEEEECCEEEEEE
T ss_conf 985548879999898899973242899999699999999
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.0099 Score=32.73 Aligned_cols=140 Identities=19% Similarity=0.181 Sum_probs=71.4
Q ss_pred CCCEEEEEEEEECC------CCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHC--------CCCCCCC-CEEEECC
Q ss_conf 88299964599869------9970223102778099889998589996648999877--------9986995-4899299
Q 000647 442 ANYIEFSGVKVVTP------TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLG--------GLWPLVS-GHIAKPG 506 (1374)
Q Consensus 442 ~~~i~~~~v~~~~p------~~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~--------Gl~~~~~-G~I~~~~ 506 (1374)
++.+++++.. .| +...+-+|+++. +.+..+.|+|||.+||||++|.++ |.+-|.+ .++ +.
T Consensus 9 ~~~l~i~~~r--HPlle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~--~~ 83 (234)
T d1wb9a2 9 KPGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEI--GP 83 (234)
T ss_dssp SSCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEE--CC
T ss_pred CCCEEEEEEE--CCEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEEC--CC
T ss_conf 9968999737--87797446998264057988-9953999954673136899998799999987297674176661--34
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 88443462789915798986778897517998876467799888999999769835885099985556899879569999
Q 000647 507 VGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1374)
Q Consensus 507 ~~~~~~~~i~~v~Q~p~l~~gTlreni~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQR 586 (1374)
. ++|..-... .|++.-+ ..-=..|-+|
T Consensus 84 ~-----d~I~~~~~~--------~d~~~~~----------------------------------------~S~F~~E~~~ 110 (234)
T d1wb9a2 84 I-----DRIFTRVGA--------ADDLASG----------------------------------------RSTFMVEMTE 110 (234)
T ss_dssp C-----CEEEEEEC-----------------------------------------------------------CHHHHHH
T ss_pred C-----HHHEEEECC--------CCCCCCC----------------------------------------HHHHHHHHHH
T ss_conf 4-----202348746--------7534365----------------------------------------3189999999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH----HHHHH-CCCEEEEECCCHHHHH
Q ss_conf 99999971599899986688899999999999----99980-5977999905922686
Q 000647 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFC----AKVRA-MGTSCITISHRPALVA 639 (1374)
Q Consensus 587 lalARal~~~p~iliLDEptSaLD~~~e~~i~----~~l~~-~~~TiI~itHr~~~~~ 639 (1374)
+.-.---..+..++++||..++-+++-...+. +.+.. .+..+++.||...+..
T Consensus 111 ~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 111 TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 168 (234)
T ss_dssp HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf 9999974546608853222358774566678987645432045442898524687764
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.42 E-value=0.0046 Score=35.27 Aligned_cols=119 Identities=16% Similarity=0.221 Sum_probs=68.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCH
Q ss_conf 09988999858999664899987799869954899299884434627899157989867788975179988764677998
Q 000647 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH 548 (1374)
Q Consensus 469 ~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~~~~~~~i~~v~Q~p~l~~gTlreni~~~~~~~~~~~~~~~ 548 (1374)
.++-.++++||+||||||.+..+....+....+| .-+- +|. -|........ ...
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i-------------~tiE-dPi----------E~~~~~~~q~-~v~- 209 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI-------------LTVE-DPI----------EFDIDGIGQT-QVN- 209 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE-------------EEEE-SSC----------CSCCSSSEEE-ECB-
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEE-------------EEEC-CCC----------CCCCCCCCEE-EEC-
T ss_conf 4105489876787774477999866625787469-------------9962-674----------3456788702-655-
Q ss_pred HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 88999999769835885099985556899879569999999999715998999866888999999999999998059779
Q 000647 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSC 628 (1374)
Q Consensus 549 ~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~iliLDEptSaLD~~~e~~i~~~l~~~~~Ti 628 (1374)
-..|+----++..++-++|++++..|... .++.....+.. ..|..+
T Consensus 210 ------------------------------~~~~~~~~~~l~~~lR~dPDvi~igEiRd---~~ta~~a~~aa-~tGhlV 255 (401)
T d1p9ra_ 210 ------------------------------PRVDMTFARGLRAILRQDPDVVMVGEIRD---LETAQIAVQAS-LTGHLV 255 (401)
T ss_dssp ------------------------------GGGTBCHHHHHHHHGGGCCSEEEESCCCS---HHHHHHHHHHH-HTTCEE
T ss_pred ------------------------------CCCCCCHHHHHHHHHHHCCCEEEECCCCC---HHHHHHHHHHH-HCCCEE
T ss_conf ------------------------------87677999999999841388898457687---59999999997-249858
Q ss_pred EEECCCHHHHHHCCEEEEE
Q ss_conf 9990592268613679981
Q 000647 629 ITISHRPALVAFHDVVLSL 647 (1374)
Q Consensus 629 I~itHr~~~~~~~d~il~l 647 (1374)
+..-|-.+.....++...+
T Consensus 256 ~tTlHa~~a~~~~~Rl~~~ 274 (401)
T d1p9ra_ 256 MSTLHTNTAVGAVTRLRDM 274 (401)
T ss_dssp EEEECCSSSHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHC
T ss_conf 9983367667665432100
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.25 E-value=0.0028 Score=36.92 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8985999759999299999999368999998386
Q 000647 1125 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158 (1374)
Q Consensus 1125 ~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~ 1158 (1374)
+|++..++|+||.|||||++.|.+=.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.03 Score=29.05 Aligned_cols=149 Identities=14% Similarity=0.155 Sum_probs=66.5
Q ss_pred CCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCC----CCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCHHHH
Q ss_conf 970223102778099889998589996648999877998----6995489929988443462789915798986778897
Q 000647 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW----PLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQ 532 (1374)
Q Consensus 457 ~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~----~~~~G~I~~~~~~~~~~~~i~~v~Q~p~l~~gTlren 532 (1374)
-+.++.+ +.+|+.+.|.|++|+|||||+--++--+ +...+.... ...+.|+.-+.. ...+.+.
T Consensus 19 ~d~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~-------~~~vl~~~~E~~--~~~~~~R 85 (274)
T d1nlfa_ 19 LDYVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELP-------TGPVIYLPAEDP--PTAIHHR 85 (274)
T ss_dssp CCEEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCC-------CCCEEEEESSSC--HHHHHHH
T ss_pred HHHHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCC-------CCCEEEEECCCH--HHHHHHH
T ss_conf 7898689----55895899992899989999999999997699721112357-------873689851234--9999999
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC---
Q ss_conf 51799887646779988899999976983588509998555689987956999999999971599899986688899---
Q 000647 533 LIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV--- 609 (1374)
Q Consensus 533 i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~g~~LSgGqkQRlalARal~~~p~iliLDEptSaL--- 609 (1374)
+.--. ................+. +.. +.....-....+.-...-.++|+++++|--+...
T Consensus 86 l~~~~------~~~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~ 148 (274)
T d1nlfa_ 86 LHALG------AHLSAEERQAVADGLLIQ------PLI-----GSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEE 148 (274)
T ss_dssp HHHHH------TTSCHHHHHHHHHHEEEC------CCT-----TSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSC
T ss_pred HHHHH------HCCCHHHHHCCCCCCEEC------CCC-----CCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHCCCC
T ss_conf 99986------236866653123332321------456-----7420357899999988752676589628135422665
Q ss_pred --CHHHHHHHHHHH----HHCCCEEEEECCCH
Q ss_conf --999999999999----80597799990592
Q 000647 610 --TTDMEERFCAKV----RAMGTSCITISHRP 635 (1374)
Q Consensus 610 --D~~~e~~i~~~l----~~~~~TiI~itHr~ 635 (1374)
|......++..+ +..+.+++++.|-.
T Consensus 149 ~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 149 ENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 23225689999887777644797540131005
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.02 E-value=0.011 Score=32.31 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=31.1
Q ss_pred CCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 999702231027780998899985899966489998779
Q 000647 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 455 p~~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~G 493 (1374)
|+|-+-|+++.--+.+|+.+.|.|++|+||||++.-++-
T Consensus 19 ~TG~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 19 FSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp CCSCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 788366888746978980899994799979999999997
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.97 E-value=0.0022 Score=37.77 Aligned_cols=40 Identities=23% Similarity=0.379 Sum_probs=29.1
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 2778099889998589996648999877998699548992
Q 000647 465 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504 (1374)
Q Consensus 465 sl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~ 504 (1374)
..-++.+..++|+||.||||||++++|++..|+..=-|++
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9999837888999403566257899986530145623311
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.91 E-value=0.0041 Score=35.66 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=31.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 99889998589996648999877998699548992
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~ 504 (1374)
+|+..+++|+||+|||||++.|.|-.....|.|..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC
T ss_conf 69808997889877888877305355501068420
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.90 E-value=0.03 Score=29.07 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=29.3
Q ss_pred CCCCEEEEEEEE-EEECCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 999702231027-7809988999858999664899987799
Q 000647 455 PTGNVLVENLTL-KVEPGSNLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 455 p~~~~~l~~lsl-~i~~G~~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
|+|.+-|+++=- -+++|..+.|.||+|||||+|+.-++--
T Consensus 9 ~TG~~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 9 SSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp CCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 78967798845689869849999918999999999999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.58 E-value=0.0025 Score=37.36 Aligned_cols=27 Identities=33% Similarity=0.613 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCC
Q ss_conf 988999858999664899987799869
Q 000647 471 GSNLLITGPNGSGKSSLFRVLGGLWPL 497 (1374)
Q Consensus 471 G~~~~I~GpsGsGKSTLl~~L~Gl~~~ 497 (1374)
|..+.|+||||||||||.+.|...+|.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.50 E-value=0.0043 Score=35.50 Aligned_cols=27 Identities=37% Similarity=0.630 Sum_probs=23.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099889998589996648999877998
Q 000647 469 EPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 469 ~~G~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
|+|.+++|+||+||||||+.+.|+..+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.47 E-value=0.0034 Score=36.23 Aligned_cols=40 Identities=25% Similarity=0.436 Sum_probs=32.4
Q ss_pred CEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 2088828985999759999299999999368999998386
Q 000647 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158 (1374)
Q Consensus 1119 lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~ 1158 (1374)
+...++.|..+.|+|++||||||++++|.+..|+..=-|+
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivt 198 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIIS 198 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEE
T ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 9999983788899940356625789998653014562331
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.47 E-value=0.0037 Score=35.96 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=12.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 998899985899966489998779
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+|..++|+|++||||||+.+.|+.
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976999889999999999999999
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.41 E-value=0.056 Score=27.01 Aligned_cols=44 Identities=18% Similarity=0.100 Sum_probs=28.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHH----H-HHHHHCCCEEEEECCCCCCHH
Q ss_conf 6868885056889998999999----9-999816963999169988442
Q 000647 1309 KPKFGILDECTNATSVDVEEQL----Y-RLAKDMGITFVTSSQRPALIP 1352 (1374)
Q Consensus 1309 ~pkillLDEaTSaLD~~~e~~l----~-~~~~~~~~TvI~IaHR~~~i~ 1352 (1374)
+..++++||.-+.++++-...+ . .+....++.+++.+|-.....
T Consensus 120 ~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 120 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 168 (234)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf 6608853222358774566678987645432045442898524687764
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.39 E-value=0.0051 Score=34.93 Aligned_cols=26 Identities=42% Similarity=0.606 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99889998589996648999877998
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.|+.++|+||+||||||+.+.|+...
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.37 E-value=0.00039 Score=43.45 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=17.8
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCCCCCCE
Q ss_conf 889998589996648999877998699548
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~ 501 (1374)
+++.|+||+|+|||||++.++..+....+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~ 31 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVP 31 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 699998899971999999999999977997
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.27 E-value=0.0053 Score=34.79 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=28.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCC
Q ss_conf 899985899966489998779986995489929988443462789915798986
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAV 526 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~~~~~~~i~~v~Q~p~l~~ 526 (1374)
.++|.|++||||||+.+.|..+.....+ ...+..++++.|...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------HRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------CCCEEEEEGGGGBCC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------CCCEEEEEEEEEECC
T ss_conf 9999689999876899999999730468-----------996599952156898
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.22 E-value=0.0025 Score=37.34 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8985999759999299999999368999998386
Q 000647 1125 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158 (1374)
Q Consensus 1125 ~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~ 1158 (1374)
.|++..++|+||.|||||+++|.+=.....|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.17 E-value=0.0092 Score=32.99 Aligned_cols=28 Identities=43% Similarity=0.625 Sum_probs=23.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 8999858999664899987799869954
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLWPLVSG 500 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~~~~~G 500 (1374)
.++|+|++|+|||||++.|.|.-.-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7999899999789999999588867775
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.16 E-value=0.0061 Score=34.35 Aligned_cols=27 Identities=41% Similarity=0.751 Sum_probs=23.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 985999759999299999999368999
Q 000647 1126 GKSLLVTGPNGSGKSSVFRVLRGLWPV 1152 (1374)
Q Consensus 1126 Ge~v~IvG~SGsGKSTL~~~L~rl~~~ 1152 (1374)
|+-+.|+||||||||||.+.|..-++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.01 E-value=0.0065 Score=34.11 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289859997599992999999993689
Q 000647 1124 VPGKSLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1124 ~~Ge~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
++|..|.++|.+||||||+.+.|.+-.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.90 E-value=0.011 Score=32.31 Aligned_cols=38 Identities=34% Similarity=0.440 Sum_probs=28.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCC
Q ss_conf 8985999759999299999999368999998386599866
Q 000647 1125 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHI 1164 (1374)
Q Consensus 1125 ~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI 1164 (1374)
.|+-|.|+|++||||||+.+.|.+-... --+.+|+.++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~d~~ 40 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHSDDL 40 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECTTHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECHHHH
T ss_conf 9859999889999889999999999599--9799068999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.88 E-value=0.078 Score=25.90 Aligned_cols=42 Identities=14% Similarity=0.025 Sum_probs=20.3
Q ss_pred CCCEEEEECCCCCCCHHHHH----HHHHHHHHCCCEEEEECCCCCC
Q ss_conf 68688850568899989999----9999998169639991699884
Q 000647 1309 KPKFGILDECTNATSVDVEE----QLYRLAKDMGITFVTSSQRPAL 1350 (1374)
Q Consensus 1309 ~pkillLDEaTSaLD~~~e~----~l~~~~~~~~~TvI~IaHR~~~ 1350 (1374)
+..++|+||--..++.+-.. ++.+.+.+.+++++..+|-..+
T Consensus 114 ~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL 159 (224)
T d1ewqa2 114 ENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFEL 159 (224)
T ss_dssp TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHH
T ss_pred CCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHH
T ss_conf 7727855454568623320025888888886237613786520233
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.0076 Score=33.61 Aligned_cols=28 Identities=39% Similarity=0.666 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCC
Q ss_conf 9988999858999664899987799869
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGLWPL 497 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl~~~ 497 (1374)
+|..+.|+||||+||+||.+.|.-..|.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~ 28 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPL 28 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9809999999999999999999863986
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.0023 Score=37.50 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=27.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 859997599992999999993689999983865
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 1159 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~i 1159 (1374)
+.|.|+||.|+||||+++.+.+.+....+++..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~ 34 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 699998899971999999999999977997999
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.76 E-value=0.0077 Score=33.56 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=21.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099889998589996648999877998
Q 000647 469 EPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 469 ~~G~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
+.+..+.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.67 E-value=0.0096 Score=32.85 Aligned_cols=23 Identities=35% Similarity=0.328 Sum_probs=15.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.++|.||+|||||||.+.|.-..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978988789999999999983
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.60 E-value=0.014 Score=31.65 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=24.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2898599975999929999999936899
Q 000647 1124 VPGKSLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1124 ~~Ge~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
++|-++.|+|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.60 E-value=0.0045 Score=35.34 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=31.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 99889998589996648999877998699548992
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~ 504 (1374)
+|+..+++|+||+|||||++.|.|......|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf 35649998778734878987515176764035553
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.57 E-value=0.0072 Score=33.77 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=18.2
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 889998589996648999877998
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
+.++|+||+|||||||++.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.56 E-value=0.012 Score=32.18 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 98899985899966489998779986
Q 000647 471 GSNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 471 G~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
.+.++|+|++||||||+.+.|+...+
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.51 E-value=0.011 Score=32.36 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.++|+|++|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.51 E-value=0.011 Score=32.51 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8599975999929999999936899
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
++|+|+|++||||||+.+.|..-+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.45 E-value=0.013 Score=31.89 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.++++|.+|+|||||++.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.41 E-value=0.013 Score=31.94 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=29.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCC
Q ss_conf 899985899966489998779986995489929988443462789915798986
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAV 526 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~~~~~~~i~~v~Q~p~l~~ 526 (1374)
.++|.|++||||||+.+.|.-....... .. ....+..++++.|...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~--~~------~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEV--DY------RQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGS--CG------GGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCC--CC------CCCCEEEEECCCCCCC
T ss_conf 9999899978799999999999641013--45------7884399934653224
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.40 E-value=0.012 Score=32.09 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 599975999929999999936899
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
-|||.|++||||||+.+.|.....
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.39 E-value=0.0051 Score=34.94 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=12.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.++|+|++|||||||++.|...+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189998999999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.35 E-value=0.0054 Score=34.72 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=16.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9988999858999664899987799
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
+|..++++|++||||||+.+.|+..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9969998899999999999999999
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.18 E-value=0.011 Score=32.27 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=17.2
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 88999858999664899987799
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
+.+.++||+||||||+.+.|+-.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 74999899999999999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.18 E-value=0.023 Score=29.89 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=34.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCHH
Q ss_conf 59997599992999999993689999983865998665434876517996398877986567
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLR 1189 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~~~r~~i~~VpQ~P~Lf~GTiR 1189 (1374)
-|||.|++||||||+.+.|..+..-..+. ..+.+|++|-|..+...+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~---------------~~v~~Is~D~F~~~~~~l 128 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH---------------RRVELITTDGFLHPNQVL 128 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC---------------CCEEEEEGGGGBCCHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC---------------CCEEEEEEEEEECCCHHH
T ss_conf 99996899998768999999997304689---------------965999521568984588
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.14 E-value=0.017 Score=31.02 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=22.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099889998589996648999877998
Q 000647 469 EPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 469 ~~G~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
|+|-++.|+||.||||||+.+.|+--+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.09 E-value=0.017 Score=30.90 Aligned_cols=27 Identities=37% Similarity=0.639 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898599975999929999999936899
Q 000647 1125 PGKSLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1125 ~Ge~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
.|.-+.|+||||+||+||...|..-+|
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.08 E-value=0.015 Score=31.42 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 5999759999299999999368999
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWPV 1152 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~~ 1152 (1374)
-++|+|++|||||||+..|.+-+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.07 E-value=0.012 Score=32.13 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999858999664899987799
Q 000647 473 NLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
.++|+||+||||||+.+.|+--
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 7989899999989999999999
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.016 Score=31.12 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=30.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 5999759999299999999368999998386599866543487651799639887798
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCL 1185 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~~~r~~i~~VpQ~P~Lf~ 1185 (1374)
-|||.|++||||||+.+.|........ + + . ....+.+|+||-|...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~--~--~---~-----~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE--V--D---Y-----RQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG--S--C---G-----GGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC--C--C---C-----CCCCEEEEECCCCCCC
T ss_conf 999989997879999999999964101--3--4---5-----7884399934653224
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.86 E-value=0.02 Score=30.47 Aligned_cols=26 Identities=27% Similarity=0.647 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98599975999929999999936899
Q 000647 1126 GKSLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1126 Ge~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
.+-|.|+|++||||||+.+.|.+..+
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.81 E-value=0.019 Score=30.59 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.++|+|++|+|||||++.|.|.-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=93.69 E-value=0.019 Score=30.53 Aligned_cols=21 Identities=38% Similarity=0.400 Sum_probs=14.3
Q ss_pred CEEEEECCCCCCHHHHHHHHC
Q ss_conf 889998589996648999877
Q 000647 472 SNLLITGPNGSGKSSLFRVLG 492 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~ 492 (1374)
+.+.|+||+||||||+++.|.
T Consensus 3 klIii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799998999999999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.68 E-value=0.021 Score=30.28 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 859997599992999999993689
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
-++.|+|++||||||+.+.|..-+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.65 E-value=0.021 Score=30.24 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 988999858999664899987799
Q 000647 471 GSNLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 471 G~~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
+=+++|+|++|+|||||++.|.|.
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 888999999999999999999778
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.58 E-value=0.018 Score=30.77 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 8899985899966489998779986
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
..++|+||+||||||+.+.|+..++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.51 E-value=0.025 Score=29.68 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 859997599992999999993689
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
+.+.++|++||||||+.+.|..-+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=93.48 E-value=0.0012 Score=39.59 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=30.4
Q ss_pred EEEEEEECCCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 96459986999702231027780998899985899966489998779
Q 000647 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 447 ~~~v~~~~p~~~~~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~G 493 (1374)
++.+++..- ..+++.++.+.+| .++|+|||||||||++.+|.-
T Consensus 4 l~~l~l~Nf---~~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 4 FRSLTLINW---NGFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp EEEEEEEEE---TTEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEEEECC---CCEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 569999782---6870279974998-089988999987999999999
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.43 E-value=0.025 Score=29.69 Aligned_cols=24 Identities=42% Similarity=0.695 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 988999858999664899987799
Q 000647 471 GSNLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 471 G~~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
|=.++++|++|+|||||++.|.|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.41 E-value=0.012 Score=32.06 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89859997599992999999993689
Q 000647 1125 PGKSLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1125 ~Ge~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
.|..|.++|++||||||+.+.|.+.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.31 E-value=0.027 Score=29.38 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=21.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC-C-CCCCEEECCCCCCC
Q ss_conf 289859997599992999999993689-9-99983865998665
Q 000647 1124 VPGKSLLVTGPNGSGKSSVFRVLRGLW-P-VVSGSLTKPSQHID 1165 (1374)
Q Consensus 1124 ~~Ge~v~IvG~SGsGKSTL~~~L~rl~-~-~~sG~I~idg~dI~ 1165 (1374)
+.|..+.++|.|||||||+.+.|..-. . ..--.+.+||.+++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHH
T ss_conf 99869999899999989999999988777427508997536788
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.31 E-value=0.026 Score=29.50 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 98899985899966489998779986
Q 000647 471 GSNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 471 G~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
.+.++|.|+.||||||+.+.|+..+.
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899989999898999999999998
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.27 E-value=0.032 Score=28.84 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.++++|+.|+|||||++.|.|.-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.23 E-value=0.024 Score=29.74 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=22.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289859997599992999999993689
Q 000647 1124 VPGKSLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1124 ~~Ge~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
+.+.-+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.21 E-value=0.032 Score=28.84 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.++++|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=93.20 E-value=0.16 Score=23.58 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=24.9
Q ss_pred CCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 333323208882898599975999929999999936
Q 000647 1113 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1113 ~~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
..++.|+ .||+-..|+|++|+||||+..-|.-
T Consensus 20 d~li~G~----~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 20 DYVLPNM----VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp CEEETTE----ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHCCC----CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 8986895----5895899992899989999999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.20 E-value=0.024 Score=29.86 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=16.2
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 8899985899966489998779986
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
..+.|+||||+||+||.+.|....|
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.19 E-value=0.025 Score=29.64 Aligned_cols=26 Identities=38% Similarity=0.640 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99889998589996648999877998
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
++..++++||+|||||.|+++|+...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 98669998999988889999986213
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.18 E-value=0.019 Score=30.56 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 89998589996648999877998699
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLWPLV 498 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~~~~ 498 (1374)
++++.||.|+||||++++++..+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 48987999973889999998503888
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.14 E-value=0.023 Score=29.96 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=24.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCC
Q ss_conf 59997599992999999993689999983865998
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQ 1162 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~ 1162 (1374)
-+.|+|++||||||+.+.|.+-++ +.+.+++.
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~d 35 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD---NSAYIEGD 35 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS---SEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC---CCEEEEHH
T ss_conf 899989999998999999999809---98898307
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.09 E-value=0.018 Score=30.68 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=14.2
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
.++|+|++++|||||++.|.|
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEE
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 699989999879999999968
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.00 E-value=0.027 Score=29.44 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99889998589996648999877998
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
+...++|+||.||||||+.+.|+-.+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.99 E-value=0.021 Score=30.33 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8599975999929999999936899
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
+-+.|+||||+||+||++.|.+-.|
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=92.98 E-value=0.029 Score=29.19 Aligned_cols=34 Identities=26% Similarity=0.248 Sum_probs=23.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCC
Q ss_conf 5999759999299999999368999998386599866
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHI 1164 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI 1164 (1374)
-|.|+|++||||||+.+.|.+- ..|...++..|+
T Consensus 4 lIii~G~pGsGKTTla~~L~~~---~~~~~~~~~d~~ 37 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIAK---NPGFYNINRDDY 37 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH---STTEEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH---CCCCEEECHHHH
T ss_conf 9999899999999999999995---799799603999
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.97 E-value=0.024 Score=29.80 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 8899985899966489998779986
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
..+++.||.|||||||.+.|++...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.93 E-value=0.04 Score=28.09 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=28.7
Q ss_pred CCCCEEEEEEEE-EEECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 999702231027-78099889998589996648999877998
Q 000647 455 PTGNVLVENLTL-KVEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 455 p~~~~~l~~lsl-~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
|+|.+-|+.+-= -+++|+.+.|.||+|||||+|+.-++.-.
T Consensus 6 ~TG~~~LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 6 TTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp CCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 588878997155898599799999589999999999999999
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.92 E-value=0.014 Score=31.62 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999929999999936899
Q 000647 1129 LLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1129 v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
++|+|++|||||||+..|.+.+.
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99980999989999999999998
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.91 E-value=0.027 Score=29.43 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 998899985899966489998779986
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
+.-+++++|++|+|||||++.+.+-..
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 777899999999898999999967887
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.90 E-value=0.034 Score=28.62 Aligned_cols=24 Identities=42% Similarity=0.848 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 899985899966489998779986
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
-+.|+|||||||+||.+.|+...|
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.88 E-value=0.043 Score=27.91 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 0998899985899966489998779
Q 000647 469 EPGSNLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 469 ~~G~~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+.-+.+.++|++||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.75 E-value=0.04 Score=28.11 Aligned_cols=22 Identities=36% Similarity=0.447 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999858999664899987799
Q 000647 473 NLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
.++|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.74 E-value=0.048 Score=27.50 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=24.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289859997599992999999993689
Q 000647 1124 VPGKSLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1124 ~~Ge~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
++|-++.|+||.||||||+.+.|..-|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=92.72 E-value=0.03 Score=29.04 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 59997599992999999993689
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
+|+|+|++|+|||||++.|.+--
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.70 E-value=0.04 Score=28.15 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=23.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 80998899985899966489998779986
Q 000647 468 VEPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 468 i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
++....+++.||+|||||++++.++..+.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 99888678668998882289999999829
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.68 E-value=0.038 Score=28.32 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 8899985899966489998779986
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
..+++.||+|+||||++++++....
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4499987999988899999999987
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.64 E-value=0.017 Score=31.01 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 889998589996648999877998699
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLWPLV 498 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~~~~ 498 (1374)
+.++|+|++|||||||+..|...+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 099998099998999999999999867
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.53 E-value=0.021 Score=30.30 Aligned_cols=23 Identities=35% Similarity=0.882 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999929999999936899
Q 000647 1129 LLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1129 v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
|.|+|||||||+||.+.|..-.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.50 E-value=0.032 Score=28.85 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99985899966489998779986
Q 000647 474 LLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 474 ~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
+.|+|||||||+||.+.|....+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=92.49 E-value=0.027 Score=29.39 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9998589996648999877998
Q 000647 474 LLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 474 ~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
++|+|++++|||||++.|.|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=92.44 E-value=0.032 Score=28.86 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=18.8
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 88999858999664899987799
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
+.+.++|++||||||+.+.|+-.
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 98899889999889999999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.43 E-value=0.043 Score=27.87 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999929999999936899
Q 000647 1129 LLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1129 v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
|.|+|||||||+||.+.|..-++
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.43 E-value=0.046 Score=27.63 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
.++|+|+.||||||+++.+.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.43 E-value=0.05 Score=27.37 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=26.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHH
Q ss_conf 59989998668889999999999999980597799990592268
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALV 638 (1374)
Q Consensus 595 ~~p~iliLDEptSaLD~~~e~~i~~~l~~~~~TiI~itHr~~~~ 638 (1374)
.+.+++++|-.. .. .+.+..+.+.+++.++.+++|-......
T Consensus 134 ~~~d~~l~~~~~-~~-~~~d~~l~~~l~~~~k~~~~V~nK~D~~ 175 (400)
T d1tq4a_ 134 YEYDFFIIISAT-RF-KKNDIDIAKAISMMKKEFYFVRTKVDSD 175 (400)
T ss_dssp GGCSEEEEEESS-CC-CHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred HCCEEEEEECCC-CC-CHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 226599996588-88-7889999999997699879997086321
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.42 E-value=0.032 Score=28.85 Aligned_cols=22 Identities=45% Similarity=0.570 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999858999664899987799
Q 000647 473 NLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
.+.|+|++||||||+.+.|+..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 3999899999889999999998
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.38 E-value=0.045 Score=27.72 Aligned_cols=27 Identities=37% Similarity=0.587 Sum_probs=20.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898599975999929999999936899
Q 000647 1125 PGKSLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1125 ~Ge~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
|+..++++||+||||+.|.++|.+...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 986699989999888899999862132
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=92.35 E-value=0.042 Score=27.95 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=14.4
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|++|||||||++.+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.33 E-value=0.028 Score=29.35 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 9889998589996648999877998699
Q 000647 471 GSNLLITGPNGSGKSSLFRVLGGLWPLV 498 (1374)
Q Consensus 471 G~~~~I~GpsGsGKSTLl~~L~Gl~~~~ 498 (1374)
.-.++|+||.|+|||||+..|...+...
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~ 81 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIRE 81 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 3289743899998999999999999756
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.30 E-value=0.043 Score=27.86 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=13.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++|+|++|||||||++.+.+
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999899999999967
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.29 E-value=0.039 Score=28.17 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 889998589996648999877998
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.++++.||+|+||||++++++...
T Consensus 46 ~~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 769997899974879999999998
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=92.27 E-value=0.023 Score=30.00 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=11.9
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9998589996648999877998
Q 000647 474 LLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 474 ~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
++|+|++++|||||++.|.|..
T Consensus 19 I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 19 VAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998899998999999985898
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.20 E-value=0.04 Score=28.13 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99889998589996648999877998
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
+-..++|+||.||||||+.+.|+.-+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97289998999999899999999985
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.12 E-value=0.043 Score=27.89 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 889998589996648999877998
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
-.++|-||+||||||+.+.|+--+
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 599978999879899999999996
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.02 E-value=0.046 Score=27.68 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 8899985899966489998779986
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
..++++|.+||||||+++.|+....
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.02 E-value=0.044 Score=27.82 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 59997599992999999993689
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
+|+++|++|+||||+++.|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.99 E-value=0.034 Score=28.68 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=23.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8099889998589996648999877998
Q 000647 468 VEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 468 i~~G~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
++.+..+.|.||.||||||+.+.|+.-|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.97 E-value=0.05 Score=27.40 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999858999664899987799
Q 000647 473 NLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
.++|+|++|+|||||++.|.|-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.93 E-value=0.034 Score=28.66 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=23.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 859997599992999999993689999983
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGLWPVVSGS 1156 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl~~~~sG~ 1156 (1374)
+-|+|.|+.||||||+.+.|...+.....+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 889998999989899999999999876998
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=91.88 E-value=0.056 Score=27.03 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999858999664899987799
Q 000647 473 NLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
.++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918998399999999998
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.88 E-value=0.036 Score=28.46 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 889998589996648999877998
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.++.|.||.||||||+.+.|+--+
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 299998899999899999999987
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.82 E-value=0.049 Score=27.48 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
++.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.82 E-value=0.06 Score=26.79 Aligned_cols=47 Identities=30% Similarity=0.391 Sum_probs=31.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEECCC
Q ss_conf 9889998589996648999877998699548992998844346278991579
Q 000647 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1374)
Q Consensus 471 G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~~~~~~~i~~v~Q~p 522 (1374)
.++++++||+|||||-|++.|+++... --+..+... -...+|+..+.
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT~---fTeaGYvG~DV 95 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATK---FTEVGYVGKEV 95 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGG---GC----CCCCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCE---EEECCEEECCH
T ss_conf 564799899998899999999987389--889862551---14111110444
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.79 E-value=0.076 Score=25.99 Aligned_cols=39 Identities=33% Similarity=0.325 Sum_probs=27.7
Q ss_pred CCCCEEEEEEEE-EEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 999702231027-780998899985899966489998779
Q 000647 455 PTGNVLVENLTL-KVEPGSNLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 455 p~~~~~l~~lsl-~i~~G~~~~I~GpsGsGKSTLl~~L~G 493 (1374)
|+|.+-|+.+-- -+++|+.+.|.||+|||||+|..-++-
T Consensus 17 ~TGi~~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 17 TTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp CCSCHHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 5889789963179986996999983899988999999999
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.78 E-value=0.034 Score=28.66 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=7.8
Q ss_pred HHCCCCCEEEEECCC
Q ss_conf 971599899986688
Q 000647 592 LFYHKPKFAILDECT 606 (1374)
Q Consensus 592 al~~~p~iliLDEpt 606 (1374)
-......++++||-.
T Consensus 245 ~~v~~~~~~~~dei~ 259 (443)
T d1g41a_ 245 DAVEQNGIVFIDEID 259 (443)
T ss_dssp HHHHHHCEEEEETGG
T ss_pred HHHHCCCCCCCCHHH
T ss_conf 987426755542233
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.74 E-value=0.09 Score=25.44 Aligned_cols=23 Identities=39% Similarity=0.400 Sum_probs=12.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHC
Q ss_conf 99889998589996648999877
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLG 492 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~ 492 (1374)
.|.-++|+|+||+||||+...+.
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 99999998189999899999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.73 E-value=0.052 Score=27.23 Aligned_cols=22 Identities=41% Similarity=0.449 Sum_probs=18.6
Q ss_pred CEEEEECCCCCCHHHHHHHHCC
Q ss_conf 8899985899966489998779
Q 000647 472 SNLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~G 493 (1374)
-.++|+|++||||||+++.|.-
T Consensus 4 ~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999989887789999999998
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=91.69 E-value=0.089 Score=25.48 Aligned_cols=25 Identities=40% Similarity=0.349 Sum_probs=13.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHC
Q ss_conf 8099889998589996648999877
Q 000647 468 VEPGSNLLITGPNGSGKSSLFRVLG 492 (1374)
Q Consensus 468 i~~G~~~~I~GpsGsGKSTLl~~L~ 492 (1374)
.-.|.-++|+|+||+||||+.-.+.
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHH
T ss_pred EECCEEEEEEECCCCCHHHHHHHHH
T ss_conf 9999999998089999899999999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.094 Score=25.29 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 882898599975999929999999936
Q 000647 1122 EIVPGKSLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1122 ~I~~Ge~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
-|++|+-+.|.|++|||||++..-+..
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 985997999995899999999999999
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.63 E-value=0.048 Score=27.49 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
+|+|+|++|+|||||++.|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.60 E-value=0.057 Score=26.92 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=24.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 78099889998589996648999877998
Q 000647 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 467 ~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.-++|..++++|.+||||||+.+.|....
T Consensus 20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 20 RNQRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 58998699998999999899999999887
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.57 E-value=0.054 Score=27.15 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 859997599992999999993689
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
-||++||++|+|||||+..|.+=.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789999999989899999996788
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=91.51 E-value=0.066 Score=26.48 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 859997599992999999993689
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
+++.|+|++||||||+.+.|..-+
T Consensus 1 k~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 939998999998899999999983
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.49 E-value=0.059 Score=26.86 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
+|+|+|++|+|||||++.|.+-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=91.48 E-value=0.052 Score=27.27 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 985999759999299999999368
Q 000647 1126 GKSLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1126 Ge~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
|=||+++|++|+|||||++.|.+-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=91.38 E-value=0.041 Score=28.08 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
.|||+|++++|||||++.|.+-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.33 E-value=0.11 Score=24.88 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
+++++|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.27 E-value=0.056 Score=27.03 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 985999759999299999999368
Q 000647 1126 GKSLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1126 Ge~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
+=+|+|+|++|+|||||+..|.+-
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 888999999999999999999778
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.26 E-value=0.066 Score=26.47 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999858999664899987799
Q 000647 473 NLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
+++++|++|+|||||++.+.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.26 E-value=0.029 Score=29.22 Aligned_cols=30 Identities=27% Similarity=0.525 Sum_probs=25.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 780998899985899966489998779986
Q 000647 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 467 ~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
.+++...+++.||+|||||+|.+++++.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.24 E-value=0.047 Score=27.60 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999858999664899987799
Q 000647 473 NLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
.+.++|++||||||+.+.|+..
T Consensus 3 ~IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 4899889999889999999998
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.21 E-value=0.065 Score=26.49 Aligned_cols=22 Identities=45% Similarity=0.578 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
-+||+|..||||||+...|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.19 E-value=0.042 Score=27.94 Aligned_cols=39 Identities=15% Similarity=0.352 Sum_probs=28.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCC
Q ss_conf 8999858999664899987799869954899299884434627899157989
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 524 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~~~~~~~i~~v~Q~p~l 524 (1374)
.++|+|+|||||||+.+.|....... | -....+.|+.|.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~------------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G------------VKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T------------CCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C------------CCEEEEECCCCC
T ss_conf 99998999780999999999997156-9------------976999477787
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=91.18 E-value=0.066 Score=26.48 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
++.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.16 E-value=0.075 Score=26.05 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 85999759999299999999368
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
+.+-++|++||||||+.+.|..-
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 98899889999889999999999
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=91.11 E-value=0.064 Score=26.59 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 59997599992999999993689
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
-|+|+|+.|||||||+..|.+..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.05 E-value=0.064 Score=26.55 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 599975999929999999936899
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
-|.+||.+||||||+++.|.+...
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.05 E-value=0.16 Score=23.60 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=25.5
Q ss_pred CCCCEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 323208882898599975999929999999936
Q 000647 1116 ARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1116 L~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
+++-.+.| .|.-|.|+|+||+||||+...|..
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 78999999-999999981899998999999998
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.04 E-value=0.05 Score=27.36 Aligned_cols=21 Identities=38% Similarity=0.803 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
+|+|+|++|+|||||+..|.+
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~ 25 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTT 25 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999889999999967
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.99 E-value=0.066 Score=26.47 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.++|.||.||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.99 E-value=0.058 Score=26.86 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=15.6
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 889998589996648999877998
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
-.++|.|+.||||||+++.|....
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=90.98 E-value=0.078 Score=25.91 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
-|||+|..||||||+.+.|..+
T Consensus 4 iIgITG~igSGKStv~~~l~~~ 25 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTDL 25 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9998888878899999999987
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.96 E-value=0.1 Score=24.93 Aligned_cols=29 Identities=34% Similarity=0.360 Sum_probs=17.7
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 08882898599975999929999999936
Q 000647 1120 TFEIVPGKSLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1120 sl~I~~Ge~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
++-...|.-|.|+|+||+||||+...|.+
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999999999980899999999999998
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=90.96 E-value=0.086 Score=25.60 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
||+++|+.|+|||||++.|.+-
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999999998999999998089
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=90.95 E-value=0.028 Score=29.31 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 599975999929999999936899
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
+|||+|+.|+|||||+..|.+.|.
T Consensus 56 ~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 56 RLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 897438999989999999999997
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.91 E-value=0.075 Score=26.03 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9988999858999664899987799
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
.+..++|.||.|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 5987999869998299999999997
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.89 E-value=0.047 Score=27.56 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 998899985899966489998779986
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
+++.++|-|+-||||||+++.|+..++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=90.87 E-value=0.049 Score=27.47 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.+++.||.|||||+++++++..+
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=90.85 E-value=0.074 Score=26.09 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 59997599992999999993689
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
+|+|+|++|+|||||++.|.+--
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=90.77 E-value=0.054 Score=27.14 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 899985899966489998779986
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
++++.||.|+||||+++++++.+.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 389889799878889999999849
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.72 E-value=0.059 Score=26.86 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 889998589996648999877998
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
..+++.||.|||||++++.++..+
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 079988969998899999986201
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.66 E-value=0.061 Score=26.70 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
++++.||+|+||||++++++...
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 59998999998499999999997
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=90.59 E-value=0.051 Score=27.31 Aligned_cols=34 Identities=32% Similarity=0.395 Sum_probs=24.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 2898599975999929999999936899999838
Q 000647 1124 VPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL 1157 (1374)
Q Consensus 1124 ~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I 1157 (1374)
.++--+.++|||||||||.+.++.+..+....+|
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i 189 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI 189 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEE
T ss_conf 4105489876787774477999866625787469
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.58 E-value=0.088 Score=25.52 Aligned_cols=23 Identities=35% Similarity=0.312 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 88999858999664899987799
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
..++|+|+.|+|||||++.+.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.56 E-value=0.088 Score=25.51 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 859997599992999999993689
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
..|.|+||.||||||+...|..-|
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489998999998899999999997
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=90.56 E-value=0.0046 Score=35.28 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=24.8
Q ss_pred CCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 3232088828985999759999299999999368
Q 000647 1116 ARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1116 L~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
.++.+++..+| ...|+|+|||||||++.+|.-.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 70279974998-0899889999879999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=90.55 E-value=0.092 Score=25.38 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=17.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 998899985899966489998779
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+.-+++++|..|||||||++.+.+
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 857999999999898999999966
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.53 E-value=0.078 Score=25.92 Aligned_cols=38 Identities=29% Similarity=0.353 Sum_probs=26.4
Q ss_pred CCCCEEEEEEEE-EEECCCEEEEECCCCCCHHHHHHHHC
Q ss_conf 999702231027-78099889998589996648999877
Q 000647 455 PTGNVLVENLTL-KVEPGSNLLITGPNGSGKSSLFRVLG 492 (1374)
Q Consensus 455 p~~~~~l~~lsl-~i~~G~~~~I~GpsGsGKSTLl~~L~ 492 (1374)
|+|.+-|+.+=- -+++|+.+.|.||+||||||+.--++
T Consensus 19 ~TGi~~LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 19 STGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp CCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 779988997426995588799998589898899999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=90.52 E-value=0.06 Score=26.78 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||+|||++|+|||||++.+.+
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999899999999967
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=90.51 E-value=0.1 Score=24.96 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=28.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCC
Q ss_conf 828985999759999299999999368999998386599866
Q 000647 1123 IVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHI 1164 (1374)
Q Consensus 1123 I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI 1164 (1374)
+++...+.+.||+|||||++++++.+-+... -+.++..++
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l 81 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHHHH
T ss_conf 9988867866899888228999999982998--799886994
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=90.48 E-value=0.061 Score=26.74 Aligned_cols=21 Identities=24% Similarity=0.524 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|++|+|||||++.|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=90.47 E-value=0.063 Score=26.60 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8599975999929999999936899
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
-+|+|+|++++|||||++.|.+-..
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7899988999989999999858985
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.47 E-value=0.086 Score=25.61 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999858999664899987799
Q 000647 473 NLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
.++|+|+.||||||..+.+..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.44 E-value=0.065 Score=26.53 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 8899985899966489998779986
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
+.+.|.|++||||||+.+.|+..++
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.44 E-value=0.033 Score=28.78 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=28.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 59997599992999999993689999983865998665434876517996398877
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYT 1183 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~~~r~~i~~VpQ~P~L 1183 (1374)
-|||+|.|||||||+.+.|....... | ....+|+||.|-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~----------------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G----------------VKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T----------------CCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C----------------CCEEEEECCCCC
T ss_conf 99998999780999999999997156-9----------------976999477787
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.44 E-value=0.09 Score=25.44 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999858999664899987799
Q 000647 473 NLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
.++|.|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9983799878899999999999
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.37 E-value=0.081 Score=25.79 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
++.|.||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=90.35 E-value=0.1 Score=25.09 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999858999664899987799
Q 000647 473 NLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
.++|+|+..+|||||++.|.|.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999907787099999999974
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.26 E-value=0.087 Score=25.54 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
.|+|+|.+|+|||||++.|.+-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.26 E-value=0.09 Score=25.42 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 59997599992999999993689
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
++.++|+.||||||+.+.|..-+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 48998899998899999999984
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.23 E-value=0.11 Score=24.69 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099889998589996648999877998
Q 000647 469 EPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 469 ~~G~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
++|..++|.|+-||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 980599998998889999999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.21 E-value=0.079 Score=25.86 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
++.|+||.||||||..+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=90.20 E-value=0.065 Score=26.49 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
.|||+|++++|||||++.|.+-
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999899999899999999689
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.18 E-value=0.032 Score=28.81 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=28.1
Q ss_pred EEEEEEEECCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 310277809988999858999664899987799
Q 000647 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 462 ~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
=|.=+.+-+|++.+|.|++|+|||+|+..++.-
T Consensus 34 ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 34 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp HHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred EEECCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 641256457875568679998878999999997
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=90.14 E-value=0.087 Score=25.56 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.++|-||.||||+|+.+.|+.-+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.08 E-value=0.11 Score=24.77 Aligned_cols=30 Identities=27% Similarity=0.576 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC---CCCCEE
Q ss_conf 599975999929999999936899---999838
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWP---VVSGSL 1157 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~---~~sG~I 1157 (1374)
.|+|-||.||||||+.+.|..=|. .++|.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl 37 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 37 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
T ss_conf 999789998798999999999969947877999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.05 E-value=0.13 Score=24.17 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 898599975999929999999936
Q 000647 1125 PGKSLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1125 ~Ge~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
.-+-+.++|+.||||||+.+-|+.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999989999999997
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.05 E-value=0.098 Score=25.15 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|+.|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.96 E-value=0.087 Score=25.53 Aligned_cols=27 Identities=22% Similarity=0.116 Sum_probs=23.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 780998899985899966489998779
Q 000647 467 KVEPGSNLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 467 ~i~~G~~~~I~GpsGsGKSTLl~~L~G 493 (1374)
-+++|+.+.|.||+|||||++..-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.95 E-value=0.11 Score=24.85 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 99889998589996648999877998699
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLV 498 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~ 498 (1374)
+..+++|.||.|+||||+++.++..++..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~~ 70 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKDK 70 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 88816888989998999999999997544
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.92 E-value=0.082 Score=25.72 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 889998589996648999877998
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.-+++.||.|||||++++.++...
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 646876699888308999999874
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=89.85 E-value=0.11 Score=24.66 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99889998589996648999877998
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
+.-++.|+||.||||||+.+.|+--+
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 62169998899998799999999997
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.83 E-value=0.068 Score=26.35 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898599975999929999999936899
Q 000647 1125 PGKSLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1125 ~Ge~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
.++.++|-|+.||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.81 E-value=0.08 Score=25.84 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
++++.||+|+||||++++++...
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHH
T ss_conf 49998899987054699999997
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=89.80 E-value=0.099 Score=25.13 Aligned_cols=23 Identities=17% Similarity=0.523 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 59997599992999999993689
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
++.|.||.||||||+...|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.79 E-value=0.11 Score=24.70 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
-|||.|++||||||+...|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9983799878899999999999
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=89.69 E-value=0.033 Score=28.71 Aligned_cols=29 Identities=34% Similarity=0.565 Sum_probs=25.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 99889998589996648999877998699
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLV 498 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~ 498 (1374)
.|.++++.||.|+|||+|+|.++++.|+.
T Consensus 27 ~~h~vLl~G~pG~GKT~lar~~~~iLp~~ 55 (333)
T d1g8pa_ 27 GIGGVLVFGDRGTGKSTAVRALAALLPEI 55 (333)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 99708998899852999999998737982
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.69 E-value=0.13 Score=24.26 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99889998589996648999877998
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
+|..+.|-|+-||||||+.+.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98789998998887999999999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.68 E-value=0.12 Score=24.40 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.59 E-value=0.13 Score=24.15 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=27.3
Q ss_pred CCCCEEEEEEEE-EEECCCEEEEECCCCCCHHHHHHHHC
Q ss_conf 999702231027-78099889998589996648999877
Q 000647 455 PTGNVLVENLTL-KVEPGSNLLITGPNGSGKSSLFRVLG 492 (1374)
Q Consensus 455 p~~~~~l~~lsl-~i~~G~~~~I~GpsGsGKSTLl~~L~ 492 (1374)
|+|-+-|+++-- -+++|+.+.|.|++|+|||+|+.-++
T Consensus 9 ~TGi~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 9 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 479377988556899698399999479999999999999
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.49 E-value=0.12 Score=24.55 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 998899985899966489998779986
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
+|..+.|-|+-||||||+.+.|.....
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.46 E-value=0.024 Score=29.83 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999858999664899987799
Q 000647 473 NLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
.++++|++++|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.45 E-value=0.13 Score=24.16 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 59997599992999999993689
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
++.|.|+.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.39 E-value=0.13 Score=24.14 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.36 E-value=0.084 Score=25.65 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
|++++|++|+|||||+..|.+=
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.32 E-value=0.089 Score=25.47 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 599975999929999999936899
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
-+.++||.||||||+.++|.+-..
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999889799889999999999865
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.29 E-value=0.091 Score=25.42 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 599975999929999999936899
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
.|+|.|..||||||+++.|.+-.+
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999889999888999999998707
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=89.29 E-value=0.2 Score=22.82 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=23.8
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 08882898599975999929999999936
Q 000647 1120 TFEIVPGKSLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1120 sl~I~~Ge~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
++--..|.-|+|+|+||+||||+...|.+
T Consensus 8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 8 VLVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999999999980899998999999998
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.19 E-value=0.13 Score=24.18 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 859997599992999999993689
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
..+.|+||.||||||+.+.|..-|
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999999899999999985
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.08 E-value=0.14 Score=23.99 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=17.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 898599975999929999999936
Q 000647 1125 PGKSLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1125 ~Ge~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
.+..+.|+|+.|+|||||++.+.+
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 598799986999829999999999
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.05 E-value=0.12 Score=24.55 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 889998589996648999877998
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.++.|.||.||||||+.+.|+-.+
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998999999899999999996
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.03 E-value=0.097 Score=25.18 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8599975999929999999936
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
++|+|+|+.|+|||||+..|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 9899999999898999999980
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.02 E-value=0.16 Score=23.57 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=13.9
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=89.00 E-value=0.13 Score=24.12 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|+.|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999899999999964
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.00 E-value=0.16 Score=23.52 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|+.|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.96 E-value=0.13 Score=24.14 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 999999999971599899986688899
Q 000647 583 EQQRLGMARLFYHKPKFAILDECTSAV 609 (1374)
Q Consensus 583 qkQRlalARal~~~p~iliLDEptSaL 609 (1374)
++-|-.+.+|-.+.|-++++||.-.-.
T Consensus 87 ~~l~~~f~~A~~~~p~il~ideid~l~ 113 (265)
T d1r7ra3 87 ANVREIFDKARQAAPCVLFFDELDSIA 113 (265)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSGGGTC
T ss_pred HHHHHHHHHHHHCCCCCEEHHHHHHCC
T ss_conf 999999999986398435687546324
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=88.95 E-value=0.15 Score=23.73 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 59997599992999999993689
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
++.|.|+.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=88.92 E-value=0.12 Score=24.48 Aligned_cols=23 Identities=13% Similarity=0.414 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 98599975999929999999936
Q 000647 1126 GKSLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1126 Ge~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
.=||.+||+.|||||||+..|.+
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEEEECCCCCCHHHHHHHHHC
T ss_conf 57999999999898999999966
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.90 E-value=0.2 Score=22.84 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=25.6
Q ss_pred CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 3332320888289859997599992999999993
Q 000647 1114 LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLR 1147 (1374)
Q Consensus 1114 ~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~ 1147 (1374)
.+|.| =+++|+.+.|.|++||||||+..-+.
T Consensus 25 ~ll~G---Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 25 TLLGG---GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp HHHTS---SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred HHHCC---CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 63179---98699699998389998899999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.89 E-value=0.15 Score=23.77 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 89998589996648999877
Q 000647 473 NLLITGPNGSGKSSLFRVLG 492 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~ 492 (1374)
+++++|++|+|||||++-+.
T Consensus 4 Kv~liG~~~vGKSsLi~rl~ 23 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYC 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989959899999998
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.84 E-value=0.16 Score=23.55 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 59997599992999999993689
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
.|.|.||.||||||+...|..-|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.67 E-value=0.16 Score=23.53 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 599975999929999999936899
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
.+.+.||+|+||||+++++.+-..
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.63 E-value=0.14 Score=23.90 Aligned_cols=40 Identities=20% Similarity=0.154 Sum_probs=27.7
Q ss_pred CCCCEEEEEEEE-EEECCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 999702231027-7809988999858999664899987799
Q 000647 455 PTGNVLVENLTL-KVEPGSNLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 455 p~~~~~l~~lsl-~i~~G~~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
|+|-+-|+++-= -+++|+.+.|.|++|+|||++..-++--
T Consensus 17 ~TG~~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 17 STSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp CCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 27987899720798628859999917999989999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=88.61 E-value=0.15 Score=23.67 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
-|||+|..||||||+.+.|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.49 E-value=0.098 Score=25.16 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=29.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHC--CCEEEEECCCHHH
Q ss_conf 599899986688899999999999999805--9779999059226
Q 000647 595 HKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPAL 637 (1374)
Q Consensus 595 ~~p~iliLDEptSaLD~~~e~~i~~~l~~~--~~TiI~itHr~~~ 637 (1374)
.+.+++++||+-. +..+....+...+.+. +..+|+++++.+.
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 173 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCC
T ss_conf 8724999424333-4543111221002213566430001021110
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.48 E-value=0.19 Score=23.03 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289859997599992999999993689
Q 000647 1124 VPGKSLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1124 ~~Ge~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
+.|.-+.|.|+-||||||+++.|..-+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 980599998998889999999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.41 E-value=0.16 Score=23.55 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 599975999929999999936899
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
++.|+|+.||||||+.+.|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899987999998999999999869
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.39 E-value=0.18 Score=23.05 Aligned_cols=24 Identities=42% Similarity=0.754 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 899985899966489998779986
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
.++++|++|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.35 E-value=0.17 Score=23.33 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=88.31 E-value=0.17 Score=23.26 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||+++|+.|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999899999999964
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.24 E-value=0.12 Score=24.57 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
++++.||.|+||||++++++...
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 59998899877558999999985
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.20 E-value=0.18 Score=23.21 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|++|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999399999999962
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.15 E-value=0.15 Score=23.70 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
.+.+.||+|+||||+++++.+-
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6999789997487999999999
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=88.11 E-value=0.25 Score=22.07 Aligned_cols=28 Identities=39% Similarity=0.338 Sum_probs=22.7
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHC
Q ss_conf 2778099889998589996648999877
Q 000647 465 TLKVEPGSNLLITGPNGSGKSSLFRVLG 492 (1374)
Q Consensus 465 sl~i~~G~~~~I~GpsGsGKSTLl~~L~ 492 (1374)
++-.-.|.-++|+|+||+||||+.-.+.
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHH
T ss_conf 9999999999998089999999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=88.07 E-value=0.11 Score=24.73 Aligned_cols=41 Identities=27% Similarity=0.579 Sum_probs=26.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEECCCC
Q ss_conf 998899985899966489998779986995489929988443462789915798
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~~~~~~~i~~v~Q~p~ 523 (1374)
++..++++||+|+||||.+--|+..+. ..| .+++++.=+.|
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g------------~kV~lit~Dt~ 45 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLG------------KKVMFCAGDTF 45 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTT------------CCEEEECCCCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------CCEEEEEECCC
T ss_conf 977999989999988999999999999-779------------90799981366
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.07 E-value=0.37 Score=20.78 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
.++++|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=88.05 E-value=0.18 Score=23.10 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.98 E-value=0.19 Score=22.97 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
.++++|+.|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.96 E-value=0.23 Score=22.38 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHC
Q ss_conf 9998589996648999877
Q 000647 474 LLITGPNGSGKSSLFRVLG 492 (1374)
Q Consensus 474 ~~I~GpsGsGKSTLl~~L~ 492 (1374)
++++|++|+|||||++-+.
T Consensus 9 I~vvG~~~vGKSSli~~~~ 27 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYV 27 (174)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999979999999998
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.95 E-value=0.39 Score=20.55 Aligned_cols=24 Identities=29% Similarity=0.646 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 899985899966489998779986
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
+++++|..|+|||||++.+.+..+
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.92 E-value=0.19 Score=23.00 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|.+|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.91 E-value=0.32 Score=21.20 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||+++|.+|+|||||++-+..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=87.86 E-value=0.16 Score=23.44 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975999929999999936899
Q 000647 1129 LLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1129 v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
+.|+|++||||||+.+.|...+.
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989899898999999999998
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.85 E-value=0.24 Score=22.14 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898599975999929999999936899
Q 000647 1125 PGKSLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1125 ~Ge~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
.|..++|-|.-||||||++++|.....
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=87.84 E-value=0.15 Score=23.66 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 59997599992999999993689
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
+|+|+|+..+|||||+..|.+.-
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.81 E-value=0.18 Score=23.19 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=13.3
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 89998589996648999877
Q 000647 473 NLLITGPNGSGKSSLFRVLG 492 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~ 492 (1374)
.++++|+.|+|||||++.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~ 25 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFV 25 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999989929899999997
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=87.78 E-value=0.14 Score=23.93 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 59997599992999999993689
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
.|.+.||.|||||++.+++..-+
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 79988969998899999986201
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.78 E-value=0.18 Score=23.17 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=15.9
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|++|+|||||++.+.+
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.74 E-value=0.13 Score=24.20 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=24.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 0998899985899966489998779986
Q 000647 469 EPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 469 ~~G~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
+++..+++.||.|+|||++.++|+++..
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.65 E-value=0.18 Score=23.07 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|++|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=87.58 E-value=0.19 Score=22.88 Aligned_cols=25 Identities=40% Similarity=0.530 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9889998589996648999877998
Q 000647 471 GSNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 471 G~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.-.++|+||.|+|||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.49 E-value=0.19 Score=22.96 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|+.|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=87.49 E-value=0.16 Score=23.44 Aligned_cols=45 Identities=24% Similarity=0.516 Sum_probs=30.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 89859997599992999999993689999983865998665434876517996398877986
Q 000647 1125 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLG 1186 (1374)
Q Consensus 1125 ~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~idg~dI~~~~~~r~~i~~VpQ~P~Lf~G 1186 (1374)
.+..+++|||+|+||+|.+.=|...+- ..|. ++++|.=|.|=..+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g~----------------kV~lit~Dt~R~gA 49 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGK----------------KVMFCAGDTFRAAG 49 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTTC----------------CEEEECCCCSSTTH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCCC----------------CEEEEEECCCCCCC
T ss_conf 977999989999988999999999999-7799----------------07999813666540
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.47 E-value=0.12 Score=24.41 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 82898599975999929999999936899
Q 000647 1123 IVPGKSLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1123 I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
++.+..+.|.||.||||||+...|..-|.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 46782899989999987999999999869
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.35 E-value=0.24 Score=22.20 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898599975999929999999936899
Q 000647 1125 PGKSLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1125 ~Ge~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
.|..+.|-|+-||||||++..|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.28 E-value=0.32 Score=21.26 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.++++|.-.+|||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.28 E-value=0.2 Score=22.74 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|.+|+|||||++-+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.27 E-value=0.22 Score=22.46 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=14.6
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 89998589996648999877
Q 000647 473 NLLITGPNGSGKSSLFRVLG 492 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~ 492 (1374)
+++++|..|+|||||++-+.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~ 25 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFV 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999989949999999997
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.22 E-value=0.2 Score=22.77 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|++|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899388999999971
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.07 E-value=0.31 Score=21.31 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHC-CCEEEEECC
Q ss_conf 879569999999999715998--99986688899999999999999805-977999905
Q 000647 578 ELSLGEQQRLGMARLFYHKPK--FAILDECTSAVTTDMEERFCAKVRAM-GTSCITISH 633 (1374)
Q Consensus 578 ~LSgGqkQRlalARal~~~p~--iliLDEptSaLD~~~e~~i~~~l~~~-~~TiI~itH 633 (1374)
.-...+.+-.++++.++.++. ++..+.++..+.......+.+.+... .++++++++
T Consensus 143 ~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk 201 (299)
T d2akab1 143 QPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITK 201 (299)
T ss_dssp SCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 63147999999999986275603566403454211259999999738677813667702
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=87.03 E-value=0.14 Score=23.88 Aligned_cols=45 Identities=22% Similarity=0.447 Sum_probs=27.5
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEECCCC
Q ss_conf 7780998899985899966489998779986995489929988443462789915798
Q 000647 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1374)
Q Consensus 466 l~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~~~~~~~i~~v~Q~p~ 523 (1374)
+.-.+...++++||+|+||||.+--|+-.+. ..| .+++++.=+.|
T Consensus 6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~------------~kV~lit~Dt~ 50 (213)
T d1vmaa2 6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEG------------KSVVLAAADTF 50 (213)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTT------------CCEEEEEECTT
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------CCEEEEEECCC
T ss_conf 7999998999989999988999999999999-779------------90699960133
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.02 E-value=0.19 Score=22.98 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
.+.+.||+|+||||+++++.+-
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 5999899999849999999999
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.94 E-value=0.22 Score=22.51 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=16.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=86.88 E-value=0.18 Score=23.10 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=23.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 882898599975999929999999936
Q 000647 1122 EIVPGKSLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1122 ~I~~Ge~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
=+.||+-+.|.|++|+||||+..-+..
T Consensus 31 G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 31 GARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp SBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 978980899994799979999999997
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.88 E-value=0.24 Score=22.19 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 89998589996648999877
Q 000647 473 NLLITGPNGSGKSSLFRVLG 492 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~ 492 (1374)
+++++|+.|+|||||++-+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~ 23 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFC 23 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999929899999997
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=86.85 E-value=0.28 Score=21.74 Aligned_cols=46 Identities=24% Similarity=0.215 Sum_probs=33.3
Q ss_pred CCCCEEEEE-EE-EEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 999702231-02-77809988999858999664899987799869954
Q 000647 455 PTGNVLVEN-LT-LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500 (1374)
Q Consensus 455 p~~~~~l~~-ls-l~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G 500 (1374)
|+|...|+. +. =-++.|..+.|.||+|||||||+--++.......|
T Consensus 36 sTG~~~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~ 83 (263)
T d1u94a1 36 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 83 (263)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 169889999756799667358998057774789999999999870898
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.85 E-value=0.24 Score=22.18 Aligned_cols=31 Identities=19% Similarity=0.055 Sum_probs=25.8
Q ss_pred CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 3332320888289859997599992999999993
Q 000647 1114 LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLR 1147 (1374)
Q Consensus 1114 ~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~ 1147 (1374)
.+|.| =|++|+.+.|.|++|||||++..-+.
T Consensus 28 ~~lgG---Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 28 KLLGG---GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp HHTTS---SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred HHHCC---CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 73169---97689799998899887889999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=86.80 E-value=0.23 Score=22.30 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|++|+|||||+..+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=86.70 E-value=0.22 Score=22.50 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9859997599992999999993689999
Q 000647 1126 GKSLLVTGPNGSGKSSVFRVLRGLWPVV 1153 (1374)
Q Consensus 1126 Ge~v~IvG~SGsGKSTL~~~L~rl~~~~ 1153 (1374)
...+.|+||.|+||||+++.+.+.+...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~ 70 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDK 70 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 8816888989998999999999997544
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.70 E-value=0.25 Score=22.12 Aligned_cols=21 Identities=33% Similarity=0.713 Sum_probs=10.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
.+.+.||.|+|||++++++.+
T Consensus 40 giLL~GppGtGKT~l~~ala~ 60 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVAN 60 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHH
T ss_conf 468766998883089999998
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.64 E-value=0.23 Score=22.33 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=12.4
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 89998589996648999877
Q 000647 473 NLLITGPNGSGKSSLFRVLG 492 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~ 492 (1374)
.++|+|+-||||||..+.|.
T Consensus 3 iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99997999988999999999
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=86.60 E-value=0.16 Score=23.44 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=23.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 59997599992999999993689999983
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWPVVSGS 1156 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~~~sG~ 1156 (1374)
.+.+.||.|+||||+.+++..-+....+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~~ 65 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIHV 65 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 48987999973889999998503888533
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.60 E-value=0.25 Score=22.01 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=15.8
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 89998589996648999877
Q 000647 473 NLLITGPNGSGKSSLFRVLG 492 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~ 492 (1374)
+++++|..|+|||||++-+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~ 24 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYC 24 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999939899999998
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=86.56 E-value=0.18 Score=23.23 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=15.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 882898599975999929999999936
Q 000647 1122 EIVPGKSLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1122 ~I~~Ge~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
.|..|||++|.|++|+|||+|+..+.+
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 645787556867999887899999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.53 E-value=0.34 Score=21.02 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 82898599975999929999999936
Q 000647 1123 IVPGKSLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1123 I~~Ge~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
+++|+-+.|.|++|||||++..-+..
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 86984999991899999999999999
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=86.53 E-value=0.23 Score=22.28 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
+|||+|+=|+||||++..|.+.
T Consensus 53 ~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 53 RVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9861179988899999999998
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.52 E-value=0.22 Score=22.44 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|.+|+|||||++.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.52 E-value=0.23 Score=22.30 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.49 E-value=0.22 Score=22.50 Aligned_cols=30 Identities=30% Similarity=0.240 Sum_probs=24.4
Q ss_pred CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 333232088828985999759999299999999
Q 000647 1114 LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVL 1146 (1374)
Q Consensus 1114 ~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L 1146 (1374)
.+|.| =+++|+.+.|.|++||||||+..-+
T Consensus 27 ~ll~G---Glp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 27 KLLGG---GIETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp HHHTS---SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred HHHCC---CCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 74269---9558879999858989889999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.46 E-value=0.34 Score=21.00 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHH
Q ss_conf 82898599975999929999999
Q 000647 1123 IVPGKSLLVTGPNGSGKSSVFRV 1145 (1374)
Q Consensus 1123 I~~Ge~v~IvG~SGsGKSTL~~~ 1145 (1374)
+++|+-+.|.|++|+|||++..-
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHH
T ss_conf 96983999994799999999999
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.31 E-value=0.26 Score=21.91 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
.++++|..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.27 E-value=0.28 Score=21.70 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 59997599992999999993689
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
++.|.|+.||||||+...|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.26 E-value=0.22 Score=22.50 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 8899985899966489998779986
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
..++++||+|+|||.|++.|+....
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 5899977875006999999986336
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=86.25 E-value=0.3 Score=21.47 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=25.5
Q ss_pred CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 3332320888289859997599992999999993
Q 000647 1114 LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLR 1147 (1374)
Q Consensus 1114 ~vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~ 1147 (1374)
.+|.| -+++|+-+.|+|++|+|||++..-+.
T Consensus 25 ~ll~G---Gl~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 25 SVLGG---GLESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp HHTTS---SEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred HHCCC---CCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 72079---86288599999179999899999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=86.22 E-value=0.22 Score=22.50 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 859997599992999999993689
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
..+++|||+|+||+|.+.=|...+
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998999998899999999999
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.21 E-value=0.27 Score=21.84 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=86.20 E-value=0.16 Score=23.55 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=17.8
Q ss_pred CEEEEECCCCCCHHHHHHHHCC
Q ss_conf 8899985899966489998779
Q 000647 472 SNLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~G 493 (1374)
-.++++|++|+|||||++-+.+
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 8999999999988999988733
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=86.16 E-value=0.28 Score=21.74 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 599975999929999999936899
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
.+.+.||.|+|||++++++.+-+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.15 E-value=0.28 Score=21.74 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.++|+|...+||||||++|.|--
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=86.03 E-value=0.28 Score=21.73 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=15.9
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 89998589996648999877
Q 000647 473 NLLITGPNGSGKSSLFRVLG 492 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~ 492 (1374)
+++++|..|+|||||++-+.
T Consensus 6 KivlvG~~~vGKTsli~~~~ 25 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989958899999997
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.95 E-value=0.18 Score=23.14 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|.+|+|||||+..+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.92 E-value=0.18 Score=23.16 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
|+.++|++|+|||||++.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=85.89 E-value=0.25 Score=22.00 Aligned_cols=23 Identities=39% Similarity=0.700 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.++.+||+|||||-|.+.|+.+.
T Consensus 70 niLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 70 NILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
T ss_conf 32441899863789999998644
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=85.89 E-value=0.46 Score=20.04 Aligned_cols=31 Identities=26% Similarity=0.235 Sum_probs=24.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCEEE
Q ss_conf 8999858999664899987799869954899
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~ 503 (1374)
++.|-|+-|+||||+++.|........+.+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~ 38 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLY 38 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 9999888667899999999998656997699
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.89 E-value=0.26 Score=21.96 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.89 E-value=0.29 Score=21.56 Aligned_cols=21 Identities=38% Similarity=0.415 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|+.|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.69 E-value=0.29 Score=21.60 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.57 E-value=0.29 Score=21.52 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.+||.+|+|||||+..+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999399999999962
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=85.51 E-value=0.23 Score=22.29 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=18.5
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 859997599992999999993
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLR 1147 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~ 1147 (1374)
=||.++|++|+|||||++.+.
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899999999998899998873
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=85.48 E-value=0.29 Score=21.51 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 5999759999299999999368999
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWPV 1152 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~~ 1152 (1374)
.+.+.||.|+||||+++++.+-+..
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~~ 61 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELGV 61 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 3898897998788899999998498
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.44 E-value=0.3 Score=21.45 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.+.|-|+-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.42 E-value=0.29 Score=21.53 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99985899966489998779
Q 000647 474 LLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 474 ~~I~GpsGsGKSTLl~~L~G 493 (1374)
++|+|+.|+|||||++-+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999961
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.35 E-value=0.27 Score=21.78 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 599975999929999999936899
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
||.++|.+|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=85.32 E-value=0.26 Score=21.94 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=16.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8099889998589996648999877998
Q 000647 468 VEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 468 i~~G~~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.++|..+++.|+=|+||||+.|.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7998299996687765889999987642
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.27 E-value=0.39 Score=20.63 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 599975999929999999936899
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
||.++|..|+|||||++.+.+-.+
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.26 E-value=0.2 Score=22.73 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
|+.++|+.|+|||||+..+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.25 E-value=0.31 Score=21.38 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||+++|.+|+|||||++.+..
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=85.18 E-value=0.31 Score=21.34 Aligned_cols=31 Identities=23% Similarity=0.526 Sum_probs=23.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC---CCCCCEEE
Q ss_conf 59997599992999999993689---99998386
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLW---PVVSGSLT 1158 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~---~~~sG~I~ 1158 (1374)
-|+|-||.||||||+.+.|..=| ..++|.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdLl 38 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY 38 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHH
T ss_conf 8997799988989999999999699089888999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=85.14 E-value=0.21 Score=22.66 Aligned_cols=41 Identities=22% Similarity=0.405 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEECCCC
Q ss_conf 998899985899966489998779986995489929988443462789915798
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~~~~~~~i~~v~Q~p~ 523 (1374)
.-..++++||+|+||||.+--|+-.+. .+| .+++.+.=+.|
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g------------~kV~lit~Dt~ 48 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLARQFE-QQG------------KSVMLAAGDTF 48 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHHH-TTT------------CCEEEECCCTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------CCEEEEECCCC
T ss_conf 997999989999998999999999999-779------------94799823213
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.09 E-value=0.33 Score=21.18 Aligned_cols=21 Identities=43% Similarity=0.645 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.06 E-value=0.31 Score=21.35 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 89998589996648999877
Q 000647 473 NLLITGPNGSGKSSLFRVLG 492 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~ 492 (1374)
+++|+|.+|+|||||++-+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999989999999996
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.00 E-value=0.19 Score=23.03 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
.++++|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.91 E-value=0.31 Score=21.34 Aligned_cols=20 Identities=25% Similarity=0.655 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 89998589996648999877
Q 000647 473 NLLITGPNGSGKSSLFRVLG 492 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~ 492 (1374)
+++++|.+|+|||||++-+.
T Consensus 4 KivliG~~~vGKTsli~r~~ 23 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFA 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999959899999997
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.87 E-value=0.34 Score=21.06 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
.++++|.+|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999899899999999970
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.84 E-value=0.34 Score=21.04 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 89998589996648999877
Q 000647 473 NLLITGPNGSGKSSLFRVLG 492 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~ 492 (1374)
.++++|+.|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsli~~~~ 27 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFK 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999929999999997
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.83 E-value=0.31 Score=21.38 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|..|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=84.82 E-value=0.33 Score=21.14 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEECC
Q ss_conf 599975999929999999936899999838659
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKP 1160 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~~~sG~I~id 1160 (1374)
.+||+|.-||||||+.+.|..-+ |-..++
T Consensus 3 iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf 99997999988999999999868----985980
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.82 E-value=0.2 Score=22.76 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
.++++|+.|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.77 E-value=0.3 Score=21.45 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=11.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997599992999999993689
Q 000647 1129 LLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1129 v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
+.++||||+||+.+.+.|.+..
T Consensus 55 ~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 55 FLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHC
T ss_conf 9997787500699999998633
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.75 E-value=0.4 Score=20.48 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|++|+|||||+.-+..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.68 E-value=0.32 Score=21.22 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.54 E-value=0.32 Score=21.22 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.0
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 859997599992999999993
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLR 1147 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~ 1147 (1374)
-||.|+|.+|+|||||+..+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~ 25 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFV 25 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 389999989929899999997
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.52 E-value=0.21 Score=22.60 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||+++|.+|+|||||+..+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.39 E-value=0.34 Score=21.07 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 89998589996648999877
Q 000647 473 NLLITGPNGSGKSSLFRVLG 492 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~ 492 (1374)
.++++|++|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999969999999997
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.36 E-value=0.31 Score=21.39 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
.+.+.||.|+||||+++++.+-
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHH
T ss_conf 4999889998705469999999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.27 E-value=0.34 Score=21.08 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|.+|+|||||+..+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.27 E-value=0.34 Score=21.08 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8599975999929999999936
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
.||.++|.+|+|||||+..+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899388999999971
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=84.18 E-value=0.29 Score=21.57 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=19.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 988999858999664899987799
Q 000647 471 GSNLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 471 G~~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
.-+++++|++|+|||||++.+.+-
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 479999999998789999998448
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=84.13 E-value=0.2 Score=22.80 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=25.7
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 2231027780998899985899966489998779986
Q 000647 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 460 ~l~~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
+.+.+-...++| .++++||.|||||.|.+.|++...
T Consensus 113 ~~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 113 VAEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 898861436886-388877998508899999999863
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.08 E-value=0.37 Score=20.74 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|.+|+|||||+..+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.93 E-value=0.4 Score=20.48 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=15.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899985899966489998779
Q 000647 473 NLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~G 493 (1374)
.++++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.92 E-value=0.37 Score=20.74 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=26.6
Q ss_pred EEEEEEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 1027780998899985899966489998779
Q 000647 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 463 ~lsl~i~~G~~~~I~GpsGsGKSTLl~~L~G 493 (1374)
|.-+.+-+|++.+|.|++|+|||+|+.-++.
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 1025636788777667999898999999999
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.83 E-value=0.39 Score=20.58 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
|+.++|.+|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.81 E-value=0.071 Score=26.24 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
||+++|++|+|||||++.|.+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=83.76 E-value=0.33 Score=21.14 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=26.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEECCCC
Q ss_conf 98899985899966489998779986995489929988443462789915798
Q 000647 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1374)
Q Consensus 471 G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~~~~~~~i~~v~Q~p~ 523 (1374)
...++++||+|+||||.+--|+..+.. .| .+++.+.=+.|
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~-~g------------~kV~lit~Dt~ 49 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKG-KG------------RRPLLVAADTQ 49 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH-TT------------CCEEEEECCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH-CC------------CCEEEEECCCC
T ss_conf 868999899999889999999999997-79------------92799954434
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.73 E-value=0.41 Score=20.45 Aligned_cols=19 Identities=32% Similarity=0.690 Sum_probs=12.5
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 8999858999664899987
Q 000647 473 NLLITGPNGSGKSSLFRVL 491 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L 491 (1374)
+++++|.+|+|||||++-+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999989999989999988
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.67 E-value=0.39 Score=20.55 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 59997599992999999993
Q 000647 1128 SLLVTGPNGSGKSSVFRVLR 1147 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~ 1147 (1374)
||.++|..|+|||||++-+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~ 24 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYC 24 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999939899999998
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=83.62 E-value=0.44 Score=20.22 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98599975999929999999936899
Q 000647 1126 GKSLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1126 Ge~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
.-++.|.|+-||||||+.+.|..=|.
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 21699988999987999999999979
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=83.61 E-value=0.71 Score=18.61 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 988999858999664899987799
Q 000647 471 GSNLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 471 G~~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
+-.++|+|-..+||||||++|.+-
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 834888899999889999999779
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.59 E-value=0.4 Score=20.50 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.56 E-value=0.46 Score=20.05 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=29.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHH-HCCCCCCCCE-EE-CCCCCCCCC
Q ss_conf 28985999759999299999999-3689999983-86-599866543
Q 000647 1124 VPGKSLLVTGPNGSGKSSVFRVL-RGLWPVVSGS-LT-KPSQHIDEE 1167 (1374)
Q Consensus 1124 ~~Ge~v~IvG~SGsGKSTL~~~L-~rl~~~~sG~-I~-idg~dI~~~ 1167 (1374)
+.|=.+-+.|-+|||||||..+| -+|.+...|+ |+ +||.+++.+
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~ri 50 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKTEL 50 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHH
T ss_conf 65169998088877888999999999987659962587368878899
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.54 E-value=0.44 Score=20.18 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 859997599992999999993689
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
-++.|.|+-||||||+.+.|..-|
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998999999899999999996
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.53 E-value=0.31 Score=21.37 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 59997599992999999993
Q 000647 1128 SLLVTGPNGSGKSSVFRVLR 1147 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~ 1147 (1374)
||.++|.+|+|||||++.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~ 24 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHL 24 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999908899999998
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.49 E-value=0.31 Score=21.32 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=28.6
Q ss_pred HCCCCCEEEEECCCCCC-CHHHHHHHHHH---HHHCCCEEEEECCC
Q ss_conf 71599899986688899-99999999999---98059779999059
Q 000647 593 FYHKPKFAILDECTSAV-TTDMEERFCAK---VRAMGTSCITISHR 634 (1374)
Q Consensus 593 l~~~p~iliLDEptSaL-D~~~e~~i~~~---l~~~~~TiI~itHr 634 (1374)
.+...+++++||.-.-. +...+..++.. +.+.++.+|+.+..
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 139 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 8762130101126550586577889999999876316638995487
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=83.46 E-value=0.19 Score=22.91 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 899985899966489998779986
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
.+.+.||.|+|||++++.++....
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899678999899999999999987
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=83.43 E-value=0.4 Score=20.50 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999858999664899987799
Q 000647 473 NLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
.++|+|...+|||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.33 E-value=0.46 Score=20.04 Aligned_cols=22 Identities=36% Similarity=0.315 Sum_probs=17.8
Q ss_pred CEEEEECCCCCCHHHHHHHHCC
Q ss_conf 8899985899966489998779
Q 000647 472 SNLLITGPNGSGKSSLFRVLGG 493 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~G 493 (1374)
=+++++|++|+|||||++-+.+
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899789999999971
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.31 E-value=0.35 Score=20.92 Aligned_cols=25 Identities=32% Similarity=0.322 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 8899985899966489998779986
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
..+.|+||-++|||+|++.|.|...
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 9999889999979999999809987
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.24 E-value=0.39 Score=20.56 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|..|+|||||++.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.23 E-value=0.39 Score=20.59 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.22 E-value=0.42 Score=20.31 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|.+|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.20 E-value=0.44 Score=20.19 Aligned_cols=29 Identities=34% Similarity=0.458 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHHC-CCCCCCCC
Q ss_conf 889998589996648999877-99869954
Q 000647 472 SNLLITGPNGSGKSSLFRVLG-GLWPLVSG 500 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~-Gl~~~~~G 500 (1374)
-+++++|++|+|||||++-+. +...|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 779999899998899999895098278888
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.10 E-value=0.36 Score=20.83 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
.+.+.||.|+||||+++++.+-
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 5999889987755899999998
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.10 E-value=0.41 Score=20.40 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9988999858999664899987799
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
.+-.++|+|...+||||||++|.+-
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8737999789999899999999778
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.93 E-value=0.44 Score=20.17 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|.+|+|||||+.-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.83 E-value=0.44 Score=20.21 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 599975999929999999936899
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
.|.|-|.-||||||+++.|..-+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.78 E-value=0.46 Score=20.07 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|.+|+|||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.68 E-value=0.38 Score=20.64 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
.++++|.-.+|||||+++|+|.=
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.66 E-value=0.43 Score=20.28 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.|+|+.|+|||||+.-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=82.56 E-value=0.34 Score=21.00 Aligned_cols=37 Identities=24% Similarity=0.195 Sum_probs=25.5
Q ss_pred CCEEEEECCCCCCHHHHHHH-HCCCCCCCCCEEEECCC
Q ss_conf 98899985899966489998-77998699548992998
Q 000647 471 GSNLLITGPNGSGKSSLFRV-LGGLWPLVSGHIAKPGV 507 (1374)
Q Consensus 471 G~~~~I~GpsGsGKSTLl~~-L~Gl~~~~~G~I~~~~~ 507 (1374)
..|++|+|++|||||++++. +........+-|.+|..
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~k 87 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 87 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 26589990799968999999999998479988999687
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.46 E-value=0.48 Score=19.92 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 59997599992999999993
Q 000647 1128 SLLVTGPNGSGKSSVFRVLR 1147 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~ 1147 (1374)
||.++|..|+|||||+.-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999949899999998
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=82.40 E-value=0.4 Score=20.47 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=10.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
+++|||...|||||++.+|.|.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~ 47 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGR 47 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCHHHHHHHHHCC
T ss_conf 5999818989799999999689
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=82.36 E-value=0.31 Score=21.31 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|+.|+|||||++.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999878999999844
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=82.20 E-value=0.26 Score=21.98 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8599975999929999999936899
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
.-+++|||+|+||+|.+.=|...+-
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999989999998999999999999
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.99 E-value=0.51 Score=19.70 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 59997599992999999993
Q 000647 1128 SLLVTGPNGSGKSSVFRVLR 1147 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~ 1147 (1374)
||.++|..|+|||||+.-+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~ 24 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999919899999997
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=81.95 E-value=0.55 Score=19.47 Aligned_cols=24 Identities=33% Similarity=0.707 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 899985899966489998779986
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
+++|+|...+|||||++.|.|...
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999993458849999999970344
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.94 E-value=0.35 Score=20.99 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89998589996648999877998
Q 000647 473 NLLITGPNGSGKSSLFRVLGGLW 495 (1374)
Q Consensus 473 ~~~I~GpsGsGKSTLl~~L~Gl~ 495 (1374)
+++|.||.|+||||++++++..+
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 59988999998899999999762
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=81.85 E-value=0.56 Score=19.38 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8599975999929999999936899
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
.-+.+|||+|+||||.+.=|...+-
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 6899989999988999999999999
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.82 E-value=0.34 Score=21.02 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|..|+|||||+..+..
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=81.70 E-value=0.24 Score=22.26 Aligned_cols=10 Identities=10% Similarity=-0.147 Sum_probs=6.2
Q ss_pred CCEEEECCCC
Q ss_conf 5179963988
Q 000647 1172 CGIFYVPQRP 1181 (1374)
Q Consensus 1172 ~~i~~VpQ~P 1181 (1374)
..+.++.|.+
T Consensus 306 v~~~l~~Qs~ 315 (433)
T d1e9ra_ 306 LRVVAGLQST 315 (433)
T ss_dssp EEEEEEESCH
T ss_pred CEEEEEECCH
T ss_conf 1599993648
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=81.60 E-value=0.37 Score=20.73 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=27.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEECCCC
Q ss_conf 998899985899966489998779986995489929988443462789915798
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G~I~~~~~~~~~~~~i~~v~Q~p~ 523 (1374)
....++++||+|+||||.+--|+-.+. ..| .+++++.=+.|
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g------------~kV~lit~Dt~ 51 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-KKG------------FKVGLVGADVY 51 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-HTT------------CCEEEEECCCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------CCEEEEEEECC
T ss_conf 998999989999998999999999999-779------------93699972023
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.56 E-value=0.31 Score=21.32 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|..|+|||||+..|.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.54 E-value=0.54 Score=19.51 Aligned_cols=29 Identities=38% Similarity=0.560 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC-CCCCCC
Q ss_conf 85999759999299999999368-999998
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGL-WPVVSG 1155 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl-~~~~sG 1155 (1374)
-||.++|.+|+|||||+.-+..- ..|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 779999899998899999895098278888
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.49 E-value=0.54 Score=19.49 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 59997599992999999993
Q 000647 1128 SLLVTGPNGSGKSSVFRVLR 1147 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~ 1147 (1374)
||.+||.+|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989989999999997
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.42 E-value=0.53 Score=19.54 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=25.0
Q ss_pred CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 332320888289859997599992999999993689
Q 000647 1115 LARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLW 1150 (1374)
Q Consensus 1115 vL~~lsl~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~ 1150 (1374)
+|+.++ .|=--|+|+|+.++|||||+..|++-.
T Consensus 24 ~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 997079---987999988999997999999980998
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=81.35 E-value=0.58 Score=19.25 Aligned_cols=42 Identities=10% Similarity=0.139 Sum_probs=31.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHC--CCEEEEECCCHHHH
Q ss_conf 99899986688899999999999999805--97799990592268
Q 000647 596 KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALV 638 (1374)
Q Consensus 596 ~p~iliLDEptSaLD~~~e~~i~~~l~~~--~~TiI~itHr~~~~ 638 (1374)
+.+++|+||+-. ++.+....+...+.+. +..+|+++++.+-+
T Consensus 115 ~~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 115 RFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 987999978110-89999999999985689886999973885636
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=81.21 E-value=0.56 Score=19.37 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 59997599992999999993
Q 000647 1128 SLLVTGPNGSGKSSVFRVLR 1147 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~ 1147 (1374)
||.++|.+|+|||||++.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~ 25 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989958899999997
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| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.16 E-value=0.55 Score=19.46 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 998899985899966489998779986
Q 000647 470 PGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 470 ~G~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
...+++++||+|+|||++++-++..+.
T Consensus 38 ~k~n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 38 RKNNPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 668967988898867799999999998
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.08 E-value=0.52 Score=19.62 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 59997599992999999993
Q 000647 1128 SLLVTGPNGSGKSSVFRVLR 1147 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~ 1147 (1374)
||.|+|.+|+|||||+.-+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999989999999996
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=81.05 E-value=0.38 Score=20.69 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5999759999299999999368
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL 1149 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl 1149 (1374)
.|+|+|+..+|||||+..|.+-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.95 E-value=0.47 Score=19.94 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 8899985899966489998779986
Q 000647 472 SNLLITGPNGSGKSSLFRVLGGLWP 496 (1374)
Q Consensus 472 ~~~~I~GpsGsGKSTLl~~L~Gl~~ 496 (1374)
+.++|-|+-||||||+++.|.-..+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989988859999999999873
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| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=80.90 E-value=0.88 Score=17.90 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=29.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EECCC
Q ss_conf 88289859997599992999999993689999983-86599
Q 000647 1122 EIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS-LTKPS 1161 (1374)
Q Consensus 1122 ~I~~Ge~v~IvG~SGsGKSTL~~~L~rl~~~~sG~-I~idg 1161 (1374)
=|++|.-+.|.|++||||||+..-+..-..-..|. +.+|.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidt 90 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 90 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 96673589980577747899999999998708987999865
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.90 E-value=0.54 Score=19.50 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||.++|.+|+|||||+.-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
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| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.89 E-value=0.54 Score=19.50 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 59997599992999999993
Q 000647 1128 SLLVTGPNGSGKSSVFRVLR 1147 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~ 1147 (1374)
||.++|..|+|||||+.-+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~ 26 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFI 26 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999909999999997
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.83 E-value=0.59 Score=19.21 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=23.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC---CCCCCCE
Q ss_conf 5999759999299999999368---9999983
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRGL---WPVVSGS 1156 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~rl---~~~~sG~ 1156 (1374)
||.++|.+|+|||||+.-+ ++ +.|+-|-
T Consensus 4 KivllG~~~vGKTsll~r~-~f~~~~~pTiG~ 34 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM-RIIHGQDPTKGI 34 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH-HHHHSCCCCSSE
T ss_pred EEEEECCCCCCHHHHHHHH-HCCCCCCCEEEE
T ss_conf 9999989999989999988-468988872414
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| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.57 E-value=0.49 Score=19.86 Aligned_cols=20 Identities=35% Similarity=0.679 Sum_probs=9.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 59997599992999999993
Q 000647 1128 SLLVTGPNGSGKSSVFRVLR 1147 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~ 1147 (1374)
||.++|..|+|||||+.-+.
T Consensus 4 KivllG~~~vGKTsl~~r~~ 23 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMK 23 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999988899999884
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| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=80.53 E-value=0.51 Score=19.69 Aligned_cols=25 Identities=12% Similarity=0.018 Sum_probs=10.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 7956999999999971599899986
Q 000647 579 LSLGEQQRLGMARLFYHKPKFAILD 603 (1374)
Q Consensus 579 LSgGqkQRlalARal~~~p~iliLD 603 (1374)
++.-+.+++....-....|-+++.-
T Consensus 198 ~~~~e~~~~~~~~~~~~kP~~~v~N 222 (319)
T d1wxqa1 198 WSQDDLLAFASEIRRVNKPMVIAAN 222 (319)
T ss_dssp CCHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHCC
T ss_conf 5888999868874442374343225
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| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.47 E-value=0.68 Score=18.77 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8599975999929999999936899
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
..+.+||+.|.|||+++..|.+...
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8967988898867799999999998
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| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.41 E-value=0.62 Score=19.04 Aligned_cols=21 Identities=19% Similarity=0.555 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 599975999929999999936
Q 000647 1128 SLLVTGPNGSGKSSVFRVLRG 1148 (1374)
Q Consensus 1128 ~v~IvG~SGsGKSTL~~~L~r 1148 (1374)
||+++|+.|+|||||+.-+..
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
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| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=80.26 E-value=0.7 Score=18.65 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=33.1
Q ss_pred CCCCEEEEEEE--EEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 99970223102--77809988999858999664899987799869954
Q 000647 455 PTGNVLVENLT--LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500 (1374)
Q Consensus 455 p~~~~~l~~ls--l~i~~G~~~~I~GpsGsGKSTLl~~L~Gl~~~~~G 500 (1374)
|+|.+.|+.+= =-++.|..+.|.||+|||||+|+..++.......|
T Consensus 39 ~TGs~~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~ 86 (268)
T d1xp8a1 39 STGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG 86 (268)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 478889999756798667547898058765227999999999970799
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=80.23 E-value=0.24 Score=22.22 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8599975999929999999936899
Q 000647 1127 KSLLVTGPNGSGKSSVFRVLRGLWP 1151 (1374)
Q Consensus 1127 e~v~IvG~SGsGKSTL~~~L~rl~~ 1151 (1374)
..+++|||+|+||+|.+.=|...+.
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp EEEEEECSCCC----HHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999998999999999999
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=80.11 E-value=0.66 Score=18.86 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999858999664899987799
Q 000647 474 LLITGPNGSGKSSLFRVLGGL 494 (1374)
Q Consensus 474 ~~I~GpsGsGKSTLl~~L~Gl 494 (1374)
+.|.||+|||||-|+++++..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 799888998399999999987
|