Citrus Sinensis ID: 000660

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------137
MSMIGEAILTASVDLLVNKLASEGVLFFARQKEIEADLMRWANMLEMIKAVLDDAEEKRRTAPSVNLWLGELQNLAYDVEDLLDEFQTEAFRRRLPLGNGEPAAAHDQPSSSHTRPSKLRKFIHTCFTIFTPQSTQFDYDLMSKIKEIDSRFQEIVTKKNLLDLKESSAGGSKKASQRPETTSLVDEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMGTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSKIWELSEKRCGIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRDFFKELRSRSFLQQSATDASLFVMHDLINDLARWAAGETYFTLEYTSEVNKQQCFSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPGYLAPSILPKLLKPQRLRAFSLRGYHIFELPDSVGDLSTDGSSSREAETEMGMLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLKHLVVCGMSRVKRLGSEFYGNVSPIPFPCLKTLLFENMQEWEDWIPHGSSQGVEGFPKLRELHILKCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKLEIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLQKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRLEYIELRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFPEVALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILEILSCRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVEEGIQSSSSSSSRRYTSSLLEGLHISECPSLTCIFSKNELPATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISECDDDMVSIPLEDKRLGAALPLLASLTSLEIYNFPNLERLSSSIVDLQNLTSLYLKNCPKLKYFPEKGLPSSLLKLSIYDCPLIEEKCREDGGQYWALLTHLPYVEIASKWVFDDDSTEDDSTEGLKYFIISFFFLNWAYIMCW
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEccHHHHHHHHHHHHccccccccccEEEEEEEccccHHHHHHHHHHccccHHcccccEEEEEEcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccEEEEEEcccccccHHcHHHHHHHHcccccccEEEEEcccHHHHHHHcccccEEcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccHHHHccccccccccHHHHcccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccEEEccccccEEEcccccHHHHHHccccEEEEEcccccccccccccccEEEEEEccccccccccccccccccccEEccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEEEEEccccccccccccccccccEEEEEcccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccEEEcccccccccccccccccEEEEEEcccccccccccccccEEEEEEcccccEEcccccccccccEEEEEccccccEEcccccccccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHHHHHHHcccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEEEccccccccccccccccccccEEEEEccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccEEEEccccccHHHHHHccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEccccccccccccccccccccEEEEcccccccccccccccccccEEEEEccccHHHHHHHccccccccccccEEEEccccccccccccHHHcccccccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEEcccHHHHHHcccccccccccccccEEEEccEEEEEccccccccccccEEEEEHHHHHHHHHHHcc
ccHHHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEcccccccccccccccccccccccEEcccHHHHHHHHHHHcccccccccEEEEEEEccccccHHHHHHHHHccHHHHHHccEEEEEEEcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHccccccEEEEEEccHHHHHHHccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHcHHcccccccccccHHEEEcHccccHHHHHHHHEHHcccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEHHHHHHHHHHHHHccEEEEEcccccccccccccccEEEEEEEccccccccccccHHHHHHccEEcccccccccccccHHHHHHHHHHccEEEEEEEcccccccccccHccHHHHEEEEccccccccccccccccHHHHEEEEcccccccccccccccccEEEEEEEEccccccccccccccccccEEEEEEEcccccccccHHcccccccccccccEEEHcccHHHcccccHHHHHcccccccHHHEEEccccccccccHHHcHcHHHcccccccccccHcccccccEEEEEEccccccccccccccccccEEEEEcccccEEcccccccccccccEEEEcccccccccccccccccccccccEEEEccccHHHcccccccccccHHHccccccccEEEEccccccccccccccccccccEEEEcccccccccccccccccccEEEEccccccccccHHHccccccccEEEEEcccccccccccccccccccEEEEccccccccccHHHccccccccccccccccHcccccccccccHHHcHHHccccccccccccccccccccEEEEcccccccccccccccccccEEEEEccccccccccccccccccccEEEEcccccccEccccccccccccEEEEcccHcHHcccccccccccccEEEEcccccccccccccccccccEEEEcccHcccccHHHHcccccccccccEEEEcccccHccccccccccccHHccccccccEEEEcccccHHcccccccccccccEEEEcccccccccccccccccccEEEEcccHHHHHHHHccccccccccccccEEEEcccccHHcccccccccccccEEEEEEEEccHHHHccc
MSMIGEAILTASVDLLVNKLASEGVLFFARQKEIEADLMRWANMLEMIKAVLDDAEekrrtapsVNLWLGELQNLAYDVEDLLDEFQTEAFRrrlplgngepaaahdqpssshtrpsklrkFIHTCftiftpqstqfDYDLMSKIKEIDSRFQEIVTKKNLLdlkessaggskkasqrpettsLVDEAKVYGRETEKKDVVELLLRddlsndggfsvipiigmgglgkTTLAQLVYndkqvqdhfdlkawtcvsddfdvkrLTKTILTSIVAsqnvgdpslNSLQKELSKQLSGKKFLLVLDDVWnrnyddwvqlrrpfevgapgskiIVTTRNQEVAEImgtvpsyqlkklsdndcLAVFAQHSLGSHKLLEEIGKKIvtkcdglplaAQTLGgllrgkhdrREWERVLCSKIWELSEKRCGIIPALAVsyyylpptlkqCFAYCslfpkdyefeEEEIILLWCASgfldhkedenpsedlGRDFFKELRSRSFLQQSATDASLFVMHDLINDLARWAAGETYFTLEYTsevnkqqcfsrNLRHLSyirgdydgvqrfgdlydIQHLRTFLPvmltnsgpgylapsilpkllkpqrlrafslrgyhifelpdsvgdlstdgsssreaETEMGMldmlkphtnleqfcikgyggmkfptwlgdssfsnlvtlkfkncdmctalpsvgqlpslkhLVVCGMSRvkrlgsefygnvspipfpclkTLLFENMQEWedwiphgssqgvegfpklrELHILKCsklkgtfpehlpALEMLVIEGCEELLVSVSslpalckleiggckKVVWEsatghlgsqnsvvcrdasnqvflvgplkpqLQKLEELILSTKEQTYIWKSHDGLLQDICslkrltigscpklqsLVAEEEKDQQQQLCELSCRLEYIELrdcqdlvklpqsslslsslrEIEIYQCsslvsfpevalpsklktihisscdalkllpeawmcdtnsslEILEILSCRSltyiagvqlppslkmlyihncdnlrTLTVEEgiqsssssssrrYTSSLleglhisecpsltcifsknelpatleslevgnlppslkslEVLSCSKLESIAErldnntsleIIRIDFCknlkilpsgLHNLRQLQEIEIWEcknlvsfpegglpcaKLIKFNISwckglealpkglhnltslqeltigrgvelpsleedglptnlhsldiRGNMEIWKSMIERgrgfhrfsslrhfkisecdddmvsipledkrlgAALPLLAsltsleiynfpnlerlsssivDLQNltslylkncpklkyfpekglpssllklsiydcplieekcredGGQYWALLTHLPyveiaskwvfdddsteddsteGLKYFIISFFFLNWAYIMCW
MSMIGEAILTASVDLLVNKLASEGVLFFARQKEIEADLMRWANMLEMIKAVLDDAEEKRRTAPSVNLWLGELQNLAYDVEDLLDEFQTEAFRRRLPLGngepaaahdqpssshtrpSKLRKFIHTCFTIFTPQSTQFDYDLMSKIKEIDSRFQEIVTKKNlldlkessaggskkasqrpettslvdeakvygretekkdvVELLLrddlsndgGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSivasqnvgdpslNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLrrpfevgapgskiIVTTRNQEVAEIMGTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTlggllrgkhdrrEWERVLCSKiwelsekrcGIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRDFFKELRSRSFLQQSATDASLFVMHDLINDLARWAAGETYFTLEYTSEVNKQQCFSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPGYLAPSILPKLLKPQRLRAFSLRGYHIFelpdsvgdlstdgSSSREAETEMGMLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSNLVTLKFKNCDMCTALpsvgqlpslkHLVVCGMSRVKRLGSEFYGNVSPIPFPCLKTLLFENMQEWEDWIPHGSSQGVEGFPKLRELHILKCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKLEIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLQKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRLEYIELRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFPEVALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILEILSCRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVEEgiqsssssssRRYTSSLLEGLHISECPSLTCIFSKNELPATLESLEVGNLPPSLKSLEVLSCSKLESIaerldnntsleiIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELpsleedglptnlhsldirGNMEIWKSMIERGRGFHRFSSLRHFKISECDDDMVSIPLEDKRLGAALPLLASLTSLEIYNFPNLERLSSSIVDLQNLTSLYLKNCPKLKYFPEKGLPSSLLKLSIYDCPLIEEKCREDGGQYWALLTHLPYVEIASKWVFDDDSTEDDSTEGLKYFIISFFFLNWAYIMCW
MSMIGEAILTASVDLLVNKLASEGVLFFARQKEIEADLMRWANMLEMIKAVLDDAEEKRRTAPSVNLWLGELQNLAYDVEDLLDEFQTEAFRRRLPLGNGEPAAAHDQPSSSHTRPSKLRKFIHTCFTIFTPQSTQFDYDLMSKIKEIDSRFQEIVTKKNLLDLKEssaggskkasQRPETTSLVDEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMGTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSKIWELSEKRCGIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRDFFKELRSRSFLQQSATDASLFVMHDLINDLARWAAGETYFTLEYTSEVNKQQCFSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPGYLAPSILPKLLKPQRLRAFSLRGYHIFELPDSVGDLSTDGSSSREAETEMGMLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLKHLVVCGMSRVKRLGSEFYGNVSPIPFPCLKTLLFENMQEWEDWIPHGSSQGVEGFPKLRELHILKCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKLEIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLQKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRLEYIELRDCQDLVKLPQsslslsslREIEIYQCSSLVSFPEVALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILEILSCRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVEEGIQsssssssrrytssLLEGLHISECPSLTCIFSKNELPATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISECDDDMVSIPLEDKRlgaalpllasltslEIYNFPNLERLSSSIVDLQNLTSLYLKNCPKLKYFPEKGLPSSLLKLSIYDCPLIEEKCREDGGQYWALLTHLPYVEIASKWVFdddsteddsteGLKYFIISFFFLNWAYIMCW
****GEAILTASVDLLVNKLASEGVLFFARQKEIEADLMRWANMLEMIKAVLDDAEEKRRTAPSVNLWLGELQNLAYDVEDLLDEFQTEAFR**************************LRKFIHTCFTIFTPQSTQFDYDLMSKIKEIDSRFQEIVTKKNL************************************KDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQN*****************SGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMGTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSKIWELSEKRCGIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLD***********************FLQQSATDASLFVMHDLINDLARWAAGETYFTLEYTSEVNKQQCFSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPGYLAPSILPKLLKPQRLRAFSLRGYHIFELP*************************LKPHTNLEQFCIKGYGGMKFPTWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLKHLVVCGMSRVKRLGSEFYGNVSPIPFPCLKTLLFENMQEWEDWIPHGSSQGVEGFPKLRELHILKCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKLEIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLQKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIGSCPKLQSLVA*******QQLCELSCRLEYIELRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFPEVALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILEILSCRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVE*****************LLEGLHISECPSLTCIFSKNELPATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISECDDDMVSIPLEDKRLGAALPLLASLTSLEIYNFPNLERLSSSIVDLQNLTSLYLKNCPKLKYFPEKGLPSSLLKLSIYDCPLIEEKCREDGGQYWALLTHLPYVEIASKWVFDDDS****STEGLKYFIISFFFLNWAYIMCW
MSMIGEAILTASVDLLVNKLASEGVLFFARQKEIEADLMRWANMLEMIKAVLDDAEEKRRTAPSVNLWLGELQNLAYDVEDLLDEFQTEAFRRR*******************TRPSKLRKFIHTCFTIFTPQSTQFDYDLMSKIKEIDSRFQEIVTKKNLL**********************VDEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIV***********SLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMGTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSKIWELSEKRCGIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKE*****EDLGRDFFKELRSRSFLQQSATDASLFVMHDLINDLARWAAGETYFTLEYTSE*****CFSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPGYLAPSILPKLLKPQRLRAFSLRGYHIFELPDSVGDLSTDGSSSREAETEMGMLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLKHLVVCGMSRVKRLG*EFY**VSPIPFPCLKTLLFENMQEWEDWI**********FPKLRELHILKCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKLEIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLQKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRLEYIELRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFPEVALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILEILSCRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVEE***********RYTSSLLEGLHISECPSLTCIFSKNELPATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLDIRGNMEIWKSMI*****FHRFSSLRHFKISECDDDMVSIPLEDK***AALPLLASLTSLEIYNFPNLERLSSSIVDLQNLTSLYLKNCPKLKYFPEKGLPSSLLKLSIYDCPLIEEKCREDGGQYWALLTHLPYVEIASKWV***************YFIISFFFLNWAYIMCW
MSMIGEAILTASVDLLVNKLASEGVLFFARQKEIEADLMRWANMLEMIKAVLDDAEEKRRTAPSVNLWLGELQNLAYDVEDLLDEFQTEAFRRRLPLGNG****************SKLRKFIHTCFTIFTPQSTQFDYDLMSKIKEIDSRFQEIVTKKNLLDLKE******************VDEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMGTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSKIWELSEKRCGIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRDFFKELRSRSFLQQSATDASLFVMHDLINDLARWAAGETYFTLEYTSEVNKQQCFSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPGYLAPSILPKLLKPQRLRAFSLRGYHIFELPDSVG************ETEMGMLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLKHLVVCGMSRVKRLGSEFYGNVSPIPFPCLKTLLFENMQEWEDWIPHGSSQGVEGFPKLRELHILKCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKLEIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLQKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIGSCPKLQSLV*********QLCELSCRLEYIELRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFPEVALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILEILSCRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVE****************SLLEGLHISECPSLTCIFSKNELPATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISECDDDMVSIPLEDKRLGAALPLLASLTSLEIYNFPNLERLSSSIVDLQNLTSLYLKNCPKLKYFPEKGLPSSLLKLSIYDCPLIEEKCREDGGQYWALLTHLPYVEIASKWVFDDDSTEDDSTEGLKYFIISFFFLNWAYIMCW
MSMIGEAILTASVDLLVNKLASEGVLFFARQKEIEADLMRWANMLEMIKAVLDDAEEKRRTAPSVNLWLGELQNLAYDVEDLLDEFQTEAFRRRLPLGNGEPAAAHDQPSSSHTRPSKLRKFIHTCFTIFTPQSTQFDYDLMSKIKEIDSRFQEIVTKKNLLDLKES****************LVDEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMGTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSKIWELSEKRCGIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRDFFKELRSRSFLQQSATDASLFVMHDLINDLARWAAGETYFTLEYTSEVNKQQCFSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPGYLAPSILPKLLKPQRLRAFSLRGYHIFELPDSVGDLSTDGSSSREAETEMGMLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLKHLVVCGMSRVKRLGSEFYGNVSPIPFPCLKTLLFENMQEWEDWIPHGSSQGVEGFPKLRELHILKCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKLEIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLQKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRLEYIELRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFPEVALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILEILSCRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVEEGIQSSSSSSSRRYTSSLLEGLHISECPSLTCIFSKNELPATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISECDDDMVSIPLEDKRLGAALPLLASLTSLEIYNFPNLERLSSSIVDLQNLTSLYLKNCPKLKYFPEKGLPSSLLKLSIYDCPLIEEKCREDGGQYWALLTHLPYVEIASKWVFDDDSTEDDSTEGLKYFIISFFFLNWAYIMCW
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHi
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MSMIGEAILTASVDLLVNKLASEGVLFFARQKEIEADxxxxxxxxxxxxxxxxxxxxxRRTAPSVNLWLGELQNLAYDVEDLLDEFQTEAFRRRLPLGNGEPAAAHDQPSSSHTRPSKLRKFIHTCFTIFTPQSTQFDYDLMSKIKEIDSRFQEIVTKKNLLDLKESSAGGSKKASQRPETTSLVDEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMGTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSKIWELSEKRCGIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRDFFKELRSRSFLQQSATDASLFVMHDLINDLARWAAGETYFTLEYTSEVNKQQCFSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPGYLAPSILPKLLKPQRLRAFSLRGYHIFELPDSVGDLSTDGSSSREAETEMGMLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSNLVTLKFKNCDMCTALPSVGQLPSLKHLVVCGMSRVKRLGSEFYGNVSPIPFPCLKTLLFENMQEWEDWIPHGSSQGVEGFPKLRELHILKCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKLEIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLQKLEELILSTKEQTYIWKSHDGLLQDICSLKRLTIGSCPKLQSLVAEEEKDQQQQLCELSCRLEYIELRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFPEVALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILEILSCRSLTYIAGVQLPPSLKMLYIHNCDNLRTLTVEEGIQSSSSSSSRRYTSSLLEGLHISECPSLTCIFSKNELPATLESLEVGNLPPSLKSLEVLSCSKLESIAERLDNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFNISWCKGLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHFKISECDDDMVSIPLEDKRLGAALPLLASLTSLEIYNFPNLERLSSSIVDLQNLTSLYLKNCPKLKYFPEKGLPSSLLKLSIYDCPLIEEKCREDGGQYWALLTHLPYVEIASKWVFDDDSTEDDSTEGLKYFIISFFFLNWAYIMCW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1367 2.2.26 [Sep-21-2011]
Q9LRR41054 Putative disease resistan yes no 0.681 0.884 0.342 1e-122
Q7XBQ9970 Disease resistance protei N/A no 0.649 0.915 0.315 1e-107
Q7XA40992 Putative disease resistan N/A no 0.697 0.960 0.306 1e-106
Q7XA42979 Putative disease resistan N/A no 0.641 0.895 0.311 1e-105
Q7XA39988 Putative disease resistan N/A no 0.688 0.952 0.311 1e-103
Q9LRR5 1424 Putative disease resistan no no 0.468 0.450 0.312 3e-80
Q38834852 Disease resistance RPP13- no no 0.414 0.665 0.271 1e-49
Q9SX38857 Putative disease resistan no no 0.405 0.647 0.287 2e-46
Q9M667835 Disease resistance protei no no 0.359 0.589 0.294 8e-46
P0C8S1906 Probable disease resistan no no 0.367 0.554 0.264 8e-42
>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 Back     alignment and function desciption
 Score =  441 bits (1133), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 364/1064 (34%), Positives = 548/1064 (51%), Gaps = 132/1064 (12%)

Query: 1    MSMIGEAILTASVDLLVNKLASEGVLFFARQKEIEADLM-RWANMLEMIKAVLDDAEEKR 59
            M+ IGE  L A +  L   L SE    F +++E+  +L+ R +  L  I AVL DAEEK+
Sbjct: 1    MTGIGEMFLAAFLQALFQTLVSEPFRSFFKRRELNENLLERLSTALLTITAVLIDAEEKQ 60

Query: 60   RTAPSVNLWLGELQNLAYDVEDLLDEFQTEAFRRRLPLGNGEPAAAHDQPSSSHTRPSKL 119
             T P V  W+ EL+++ Y  ED LD+  TEA R  L +G           SSS  R  +L
Sbjct: 61   ITNPVVEKWVNELRDVVYHAEDALDDIATEALR--LNIG---------AESSSSNRLRQL 109

Query: 120  RKFIHTCFTIFTPQSTQFDYDLMSKIKEIDSRFQEIVTKKNLLDLKESSAGGSKKASQRP 179
            R         F   +++    L ++++++  R + + +++N+L LKE +A   K   QR 
Sbjct: 110  RG--RMSLGDFLDGNSE---HLETRLEKVTIRLERLASQRNILGLKELTAMIPK---QRL 161

Query: 180  ETTSLVDEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 239
             TTSLVDE++V+GR+ +K +++  L+ ++   D G +V+ I+G+GG+GKTTL+QL+YND+
Sbjct: 162  PTTSLVDESEVFGRDDDKDEIMRFLIPEN-GKDNGITVVAIVGIGGVGKTTLSQLLYNDQ 220

Query: 240  QVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGK--KF 297
             V+ +F  K W  VS++FDV ++TK +  S V S+      L+ LQ +L ++L+G    F
Sbjct: 221  HVRSYFGTKVWAHVSEEFDVFKITKKVYES-VTSRPCEFTDLDVLQVKLKERLTGTGLPF 279

Query: 298  LLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMGTVPSYQLKKLSDNDC 357
            LLVLDD+WN N+ DW  LR+PF   A GS+I+VTTR+Q VA IM  V  + L+ LSD DC
Sbjct: 280  LLVLDDLWNENFADWDLLRQPFIHAAQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGDC 339

Query: 358  LAVFAQHSLGSHK--LLEEIG---KKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCS 412
             ++F +   G+ +  L  EIG   ++IV KC GLPLA +TLGG+LR +    EWERVL S
Sbjct: 340  WSLFMKTVFGNQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSS 399

Query: 413  KIWELSEKRCGIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDH 472
            +IW+L   +  ++P L VSYYYLP  LK+CFAYCS+FPK + FE+++++LLW A GFL  
Sbjct: 400  RIWDLPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQ 459

Query: 473  KEDENPSEDLGRDFFKELRSRSFLQQSATDASLFVMHDLINDLARWAAGETYFTLEYTSE 532
                   E+LG ++F EL SRS LQ++ T    ++MHD IN+LA++A+GE  F+ ++   
Sbjct: 460  TRSSKNLEELGNEYFSELESRSLLQKTKTR---YIMHDFINELAQFASGE--FSSKFEDG 514

Query: 533  VNKQQCFSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPGYLAPSILPKL 592
               Q   S   R+LSY+R +Y     F  L +++ LRTFLP+ LTNS        ++ + 
Sbjct: 515  CKLQ--VSERTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSEK 572

Query: 593  LKP--QRLRAFSLRGYHIFELPDSVGDLSTDGSSSREAETEMGMLDMLKPH----TNLEQ 646
            L P   RLR  SL  Y I  LP    D   + S +R  +     L+ L        NL+ 
Sbjct: 573  LLPTLTRLRVLSLSHYKIARLPP---DFFKNISHARFLDLSRTELEKLPKSLCYMYNLQT 629

Query: 647  FCIKGYGGMK-FPTWLGDSSFSNLVTLKFKNCDMCTALPSV----GQLPSLKHLVVCGM- 700
              +     +K  PT       SNL+ L++ +  + T L  +    G+L SL+ L    + 
Sbjct: 630  LLLSYCSSLKELPT-----DISNLINLRYLDL-IGTKLRQMPRRFGRLKSLQTLTTFFVS 683

Query: 701  ----SRVKRLGS--EFYGNVSPIPFPCL-------------KTLLFENMQEWE------- 734
                SR+  LG   + +G +  +    +             K  L E    W        
Sbjct: 684  ASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSE 743

Query: 735  -DWIPHGSSQGVEGFPKLR-ELHI--LKCSKLKG-TFPEHL--PALEMLV---IEGCEEL 784
             +  PH +    E F KLR   HI  L   + KG  FP+ L  P+   +V   +  C+  
Sbjct: 744  NNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYC 803

Query: 785  --LVSVSSLPALCKLEIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLQKL 842
              L S+  LP L +L I           +G +G Q S+  +   +   L    +   + L
Sbjct: 804  TSLPSLGQLPCLKELHI-----------SGMVGLQ-SIGRKFYFSDQQLRDQDQQPFRSL 851

Query: 843  EELILSTKEQTYIWKSHDGLLQDIC-SLKRLTIGSCPKLQ--------SLVAEEEK---- 889
            E L          W        D+  SLK+L I  CP+L         SL++        
Sbjct: 852  ETLRFDNLPDWQEWLDVRVTRGDLFPSLKKLFILRCPELTGTLPTFLPSLISLHIYKCGL 911

Query: 890  -DQQQQLCELSCR-LEYIELR-DCQDLVKLPQSSLSLSSLREIEIYQCSSLVSF----PE 942
             D Q    E S R L+ + ++  C  LVK P +    ++L ++E+ QC+SL S       
Sbjct: 912  LDFQPDHHEYSYRNLQTLSIKSSCDTLVKFPLN--HFANLDKLEVDQCTSLYSLELSNEH 969

Query: 943  VALPSKLKTIHISSCDALKLLPEAWMCDTNSSLEILEILSCRSL 986
            +  P+ L+ + I+ C  L+LLP+      N     + I +CR L
Sbjct: 970  LRGPNALRNLRINDCQNLQLLPKLNALPQNLQ---VTITNCRYL 1010
Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)
>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 Back     alignment and function description
>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 Back     alignment and function description
>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 Back     alignment and function description
>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 Back     alignment and function description
>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 Back     alignment and function description
>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2 Back     alignment and function description
>sp|Q9SX38|DRL4_ARATH Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=3 SV=2 Back     alignment and function description
>sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2 Back     alignment and function description
>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1367
3594872251373 PREDICTED: putative disease resistance R 0.914 0.910 0.363 0.0
2555566711318 Disease resistance protein RPS2, putativ 0.852 0.884 0.387 0.0
359487182 2283 PREDICTED: putative disease resistance p 0.863 0.516 0.349 0.0
225465831 1483 PREDICTED: putative disease resistance R 0.899 0.828 0.360 0.0
3594950281385 PREDICTED: putative disease resistance p 0.882 0.871 0.348 0.0
2254496491418 PREDICTED: putative disease resistance p 0.923 0.890 0.356 0.0
1478624091466 hypothetical protein VITISV_042289 [Viti 0.886 0.826 0.351 0.0
3594871881292 PREDICTED: putative disease resistance R 0.878 0.929 0.349 0.0
3594870751347 PREDICTED: putative disease resistance p 0.901 0.915 0.355 0.0
2254499611318 PREDICTED: putative disease resistance p 0.893 0.926 0.348 0.0
>gi|359487225|ref|XP_002268551.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/1452 (36%), Positives = 763/1452 (52%), Gaps = 202/1452 (13%)

Query: 3    MIGEAILTASVDLLVNKLASEGVLFFARQKEIEADLMRWANMLEMIKAVLDDAEEKRRTA 62
            ++GEA+L+  +  LV+ + S  +  +AR+++++++L R  N+L  I  VL+DAEEK+ T 
Sbjct: 4    IVGEAVLSCFIQKLVDMVTSPELWKYARKEQVDSELKRCKNILTKICLVLNDAEEKQMTN 63

Query: 63   PSVNLWLGELQNLAYDVEDLLDEFQTEAFRRRLPLGNGEPAAAHDQPSSSHTRPSKLRKF 122
            P V +WL EL++LAYDVED+LD+F  EA R  L +          QP       SKLR  
Sbjct: 64   PLVKIWLDELRDLAYDVEDILDDFAIEALRSSLIMA---------QPQQG---ISKLRDM 111

Query: 123  IHTCFTIFTPQSTQFDYDLMSKIKEIDSRFQEIVTKKNLLDLKESSAGG-SKKASQRPET 181
            + +      P ++  +  + SKIKEI  R QEI  +KN LDL+E + G  S +  +R +T
Sbjct: 112  LSS----LIPSASTSNSSMRSKIKEITERLQEISAQKNDLDLREIAGGWWSDRKRKREQT 167

Query: 182  TSLVDEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQV 241
            TSLV E+ VYGRE  K D+V++LL+ D S+D   SVIPI+GMGG+GKTTLAQL +ND +V
Sbjct: 168  TSLVVESDVYGREKNKADIVDMLLKHDPSSDDEVSVIPIVGMGGIGKTTLAQLAFNDDEV 227

Query: 242  QDHFDLKAWTCVSDDFDVKRLTKTILTSI-VASQNVGDPSLNSLQKELSKQLSGKKFLLV 300
            +  FDL+AW CVSDDFDV ++TKTIL S+   + +V D  LN LQ +L ++ SGKKFLLV
Sbjct: 228  KGRFDLRAWVCVSDDFDVSKITKTILQSVDPGTHDVND--LNLLQVKLKEKFSGKKFLLV 285

Query: 301  LDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMGTVPSYQLKKLSDNDCLAV 360
            LDDVWN N  +W  L  P   GAPGSK+IVTTRN+ VA +  T P+Y L++LS+NDCL++
Sbjct: 286  LDDVWNENCHEWDTLCMPMRAGAPGSKLIVTTRNEGVAAVTRTCPAYPLRELSNNDCLSL 345

Query: 361  FAQHSL-----GSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSKIW 415
            F Q +L      +H  L+E+G++IV +C GLPLAA+ LGG+LR +  R  W  +L S+IW
Sbjct: 346  FTQQALRTRNFDAHPHLKEVGEEIVRRCKGLPLAAKALGGMLRNQLSRDAWANILTSRIW 405

Query: 416  ELSEKRCGIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKED 475
            +L E +  I+PAL +SY++LP  LKQCFAYCS+FPKDYEF +++++LLW A GFL   ++
Sbjct: 406  DLPEDKSHILPALMLSYHHLPSHLKQCFAYCSMFPKDYEFNKDDLVLLWMAEGFLQKTKE 465

Query: 476  ENPSEDLGRDFFKELRSRSFLQQSATDASLFVMHDLINDLARWAAGETYFTLEYTSEVNK 535
                EDLG  +F +L SRSF Q S+ ++S +VMHDLINDLA+  AGE YF L+   E NK
Sbjct: 466  AARPEDLGSKYFNDLFSRSFFQHSSRNSSRYVMHDLINDLAQSVAGEIYFHLDGAWENNK 525

Query: 536  QQCFSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTF--LPVMLTNSGPGYLAPSILPKLL 593
            Q   S   RH S+ R   +  ++F   + ++ LRT   LP+       GY++  +L  LL
Sbjct: 526  QSTISEKTRHSSFNRQHSETQRKFEPFHKVKCLRTLVALPMDQPVFSSGYISSKVLDDLL 585

Query: 594  KPQR-LRAFSLRGYHIFELPDSVGD------LSTDGSSSREAETEMGMLDMLKPHTNLEQ 646
            K  + LR  SL GY I+ LPDS+G+      L+  GSS R     +  L       NL+ 
Sbjct: 586  KEVKYLRVLSLSGYKIYGLPDSIGNLKYLRYLNLSGSSIRRLPDSVCHL------YNLQA 639

Query: 647  FCIKGYGGM-KFPTWLGDSSFSNLVTLK-------FKNCDMCTALPSVGQLPSLKHLVV- 697
              +     +   P  +G     NL+ L+       +K  +M +   ++ +L +L   +V 
Sbjct: 640  LILSDCKDLTTLPVGIG-----NLINLRHLHIFDTWKLQEMPSQTGNLTKLQTLSKFIVG 694

Query: 698  ----CGMSRVKRLGSEFYGNVSPIPFPCLKTL-------------LFENMQEWEDWIPHG 740
                 G+  +K L  +  G +S +    +  +             + E   EW D    G
Sbjct: 695  EGNNLGLRELKNL-FDLRGQLSILGLHNVMNIRDGRDANLESKHGIEELTMEWSD--DFG 751

Query: 741  SSQG-------VEGFPKLRELHILKCSKLKGT-FPE-----HLPALEMLVIEGCEELLVS 787
            +S+        +E     R L  L  +   G+ FP        P +  L+++ C+     
Sbjct: 752  ASRNEMHERNVLEQLRPHRNLKKLTIASYGGSGFPNWMKDPSFPIMTHLILKDCKR---- 807

Query: 788  VSSLPALCKLEIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLVGPLKPQLQKLEELIL 847
             +SLPAL ++      KV+      H+   + V      N+ F  G +KP    LE L  
Sbjct: 808  CTSLPALGQI---SSLKVL------HIKGMSEV---RTINEEFYGGIVKP-FPSLESLTF 854

Query: 848  STKEQTYIWKSHDGLLQD--ICSLKRLTIGSCPKLQSL--VAEEEKDQQQQLC------- 896
                +   W   D + +      L+ LTI  C KLQ L      +       C       
Sbjct: 855  EVMAEWEYWFCPDAVNEGELFPCLRLLTIRDCRKLQQLPNCLPSQVKLDISCCPNLGFAS 914

Query: 897  ---------ELSCRLEYIELRDCQDLVKLPQSSLSLSSLREIEIYQCSSLVSFPEVALPS 947
                      L C L+ + + D  +L KLP    +L+ L +++I  C SL  FP   LP+
Sbjct: 915  SRFASLGEQRLPCNLKMLRIHDDANLEKLPNGLQTLTCLEQLDITGCPSLRCFPNCELPT 974

Query: 948  KLKTIHISSCDALKLLPEAWM-CDTNSSLEILEILSCRSLTYIAGVQLPPSLKMLYIHNC 1006
             LK++ I  C  L+ LPE  M  D+   LE L+I  C  L       LPP L+ L +  C
Sbjct: 975  TLKSLCIKDCKNLEALPEGMMHHDSTCCLEELKIEGCPRLESFPDTGLPPLLRRLEVSEC 1034

Query: 1007 DNLRTLTVEEGIQSSSSSSSRRYTSSLLEGLHISECPSLTCIFSKNELPATLESL----- 1061
              L++L                Y+S  LE L IS+CPSL C F   ELP TL+S+     
Sbjct: 1035 KGLKSL-------------PHNYSSCALESLEISDCPSLRC-FPNGELPTTLKSIWIQDC 1080

Query: 1062 ----------------------------------EVGNLPPSLKSLEVLSCSKLESIAER 1087
                                              + G LP +LK LE+  C  LES++E 
Sbjct: 1081 ENLESLPEGMMHHDSTCCLEEVIIMGCPRLESFPDTGELPSTLKKLEICGCPDLESMSEN 1140

Query: 1088 L-DNNTSLEIIRIDFCKNLKILPSGLHNLRQLQEIEIWECKNLVSFPEGGLPCAKLIKFN 1146
            +  NN++L+ + ++   NLKILP  LH+L+ LQ   I  C+ L  FP  GL    L    
Sbjct: 1141 MCPNNSALDNLVLEGYPNLKILPECLHSLKSLQ---IINCEGLECFPARGLSTPTLTSLR 1197

Query: 1147 ISWCKGLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLDIRGNMEIWKSMIE 1206
            I  C+ L++LP  + +L SL++LTI     + S  EDG+P NL SL+I     + K +  
Sbjct: 1198 IEGCENLKSLPHQMRDLKSLRDLTILFCPGVESFPEDGMPPNLISLEISYCENLKKPI-- 1255

Query: 1207 RGRGFHRFSSLRHFKISECDDDMVSIPLEDKRLGAALPLLASLTSLEIYNFPNLERLSSS 1266
                FH  +SL    I     DMVS   E+      LP+  SLTSL I    +L  LS  
Sbjct: 1256 --SAFHTLTSLFSLTIENVFPDMVSFRDEE----CLLPI--SLTSLRITAMESLAYLS-- 1305

Query: 1267 IVDLQNLTSL-YLK--NCPKLKYFPEKGLPSSLLKLSIYDCPLIEEKCREDGGQYWALLT 1323
               LQNL SL YL+   CP L       +P++L KL I+ CP++EE+  ++ G+YW  + 
Sbjct: 1306 ---LQNLISLQYLEVATCPNLGSL--GSMPATLEKLEIWCCPILEERYSKEKGEYWPKIA 1360

Query: 1324 HLPYVEIASKWV 1335
            H+P + +  +++
Sbjct: 1361 HIPCIAMRGQFI 1372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255556671|ref|XP_002519369.1| Disease resistance protein RPS2, putative [Ricinus communis] gi|223541436|gb|EEF42986.1| Disease resistance protein RPS2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359487182|ref|XP_003633528.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225465831|ref|XP_002264750.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359495028|ref|XP_002268016.2| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147862409|emb|CAN81911.1| hypothetical protein VITISV_042289 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359487188|ref|XP_003633529.1| PREDICTED: putative disease resistance RPP13-like protein 1-like, partial [Vitis vinifera] Back     alignment and taxonomy information
>gi|359487075|ref|XP_002271015.2| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225449961|ref|XP_002271133.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1367
TAIR|locus:20916721054 AT3G14470 [Arabidopsis thalian 0.490 0.636 0.383 1.5e-122
TAIR|locus:20916621424 AT3G14460 [Arabidopsis thalian 0.309 0.297 0.384 3.4e-121
UNIPROTKB|O48647 1802 O48647 "XA1" [Oryza sativa (ta 0.263 0.199 0.388 8.3e-77
TAIR|locus:2078012852 ZAR1 "HOPZ-ACTIVATED RESISTANC 0.297 0.477 0.300 6.3e-50
TAIR|locus:504956483847 AT3G46730 [Arabidopsis thalian 0.307 0.495 0.323 1.7e-49
TAIR|locus:2075170835 RPP13 "RECOGNITION OF PERONOSP 0.283 0.463 0.319 3.6e-43
TAIR|locus:2169523901 AT5G35450 [Arabidopsis thalian 0.264 0.401 0.285 1.4e-40
TAIR|locus:2011982857 AT1G50180 [Arabidopsis thalian 0.234 0.373 0.338 4.2e-40
TAIR|locus:2176486908 RPP8 "RECOGNITION OF PERONOSPO 0.267 0.401 0.305 8.7e-40
TAIR|locus:2025916906 AT1G59780 "AT1G59780" [Arabido 0.266 0.401 0.304 1.8e-39
TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1107 (394.7 bits), Expect = 1.5e-122, Sum P(3) = 1.5e-122
 Identities = 280/730 (38%), Positives = 415/730 (56%)

Query:     1 MSMIGEAILTASVDLLVNKLASEGVLFFARQKEIEADLM-RWANMLEMIKAVLDDAEEKR 59
             M+ IGE  L A +  L   L SE    F +++E+  +L+ R +  L  I AVL DAEEK+
Sbjct:     1 MTGIGEMFLAAFLQALFQTLVSEPFRSFFKRRELNENLLERLSTALLTITAVLIDAEEKQ 60

Query:    60 RTAPSVNLWLGELQNLAYDVEDLLDEFQTEAFRRRLPLGNGEPAAAHDQPSSSHTRPSKL 119
              T P V  W+ EL+++ Y  ED LD+  TEA R  L +G           SSS  R  +L
Sbjct:    61 ITNPVVEKWVNELRDVVYHAEDALDDIATEALR--LNIG---------AESSSSNRLRQL 109

Query:   120 RKFIHTCFTIFTPQSTQFDYDLMSKIKEIDSRFQEIVTKKNLLDLKEXXXXXXXXXXQRP 179
             R         F   +++    L ++++++  R + + +++N+L LKE          QR 
Sbjct:   110 RG--RMSLGDFLDGNSEH---LETRLEKVTIRLERLASQRNILGLKELTAMIPK---QRL 161

Query:   180 ETTSLVDEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK 239
              TTSLVDE++V+GR+ +K +++  L+ ++   D G +V+ I+G+GG+GKTTL+QL+YND+
Sbjct:   162 PTTSLVDESEVFGRDDDKDEIMRFLIPEN-GKDNGITVVAIVGIGGVGKTTLSQLLYNDQ 220

Query:   240 QVQDHFDLKAWTCVSDDFDVKRLTKTILTSIVASQNVGDPSLNSLQKELSKQLSGK--KF 297
              V+ +F  K W  VS++FDV ++TK +  S V S+      L+ LQ +L ++L+G    F
Sbjct:   221 HVRSYFGTKVWAHVSEEFDVFKITKKVYES-VTSRPCEFTDLDVLQVKLKERLTGTGLPF 279

Query:   298 LLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMGTVPSYQLKKLSDNDC 357
             LLVLDD+WN N+ DW  LR+PF   A GS+I+VTTR+Q VA IM  V  + L+ LSD DC
Sbjct:   280 LLVLDDLWNENFADWDLLRQPFIHAAQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGDC 339

Query:   358 LAVFAQHSLGSHK--LLEEIG---KKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCS 412
              ++F +   G+ +  L  EIG   ++IV KC GLPLA +TLGG+LR +    EWERVL S
Sbjct:   340 WSLFMKTVFGNQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSS 399

Query:   413 KIWELSEKRCGIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDH 472
             +IW+L   +  ++P L VSYYYLP  LK+CFAYCS+FPK + FE+++++LLW A GFL  
Sbjct:   400 RIWDLPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQ 459

Query:   473 KEDENPSEDLGRDFFKELRSRSFLQQSATDASLFVMHDLINDLARWAAGETYFTLEYTSE 532
                    E+LG ++F EL SRS LQ++ T    ++MHD IN+LA++A+GE  F+ ++   
Sbjct:   460 TRSSKNLEELGNEYFSELESRSLLQKTKTR---YIMHDFINELAQFASGE--FSSKFEDG 514

Query:   533 VNKQQCFSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSGPGYLAPSILPKL 592
                Q   S   R+LSY+R +Y     F  L +++ LRTFLP+ LTNS        ++ + 
Sbjct:   515 CKLQ--VSERTRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSEK 572

Query:   593 LKPQ--RLRAFSLRGYHIFELPDSVGDLSTDGSSSREAETEMGMLDMLKPHT----NLEQ 646
             L P   RLR  SL  Y I  LP    D   + S +R  +     L+ L        NL+ 
Sbjct:   573 LLPTLTRLRVLSLSHYKIARLPP---DFFKNISHARFLDLSRTELEKLPKSLCYMYNLQT 629

Query:   647 FCIKGYGGMK-FPTWLGDSSFSNLVTLKFKNC--DMCTALPS-VGQLPSLKHLVVCGMS- 701
               +     +K  PT       SNL+ L++ +        +P   G+L SL+ L    +S 
Sbjct:   630 LLLSYCSSLKELPT-----DISNLINLRYLDLIGTKLRQMPRRFGRLKSLQTLTTFFVSA 684

Query:   702 ----RVKRLG 707
                 R+  LG
Sbjct:   685 SDGSRISELG 694
GO:0005576 "extracellular region" evidence=ISM
GO:0006952 "defense response" evidence=IEA;ISS
GO:0043531 "ADP binding" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)] Back     alignment and assigned GO terms
TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011982 AT1G50180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00010803001
SubName- Full=Chromosome chr13 scaffold_286, whole genome shotgun sequence; (1418 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1367
pfam00931285 pfam00931, NB-ARC, NB-ARC domain 5e-71
PLN03210 1153 PLN03210, PLN03210, Resistant to P 2e-10
PLN03210 1153 PLN03210, PLN03210, Resistant to P 4e-10
PLN03210 1153 PLN03210, PLN03210, Resistant to P 2e-09
PLN032101153 PLN03210, PLN03210, Resistant to P 3e-07
PLN032101153 PLN03210, PLN03210, Resistant to P 2e-04
pfam13191154 pfam13191, AAA_16, AAA ATPase domain 4e-04
PLN032101153 PLN03210, PLN03210, Resistant to P 0.001
PRK15386426 PRK15386, PRK15386, type III secretion protein Gog 0.004
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain Back     alignment and domain information 
 Score =  239 bits (611), Expect = 5e-71
 Identities = 114/287 (39%), Positives = 164/287 (57%), Gaps = 16/287 (5%)

Query: 193 RETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQVQDHFDLKAWTC 252
           RE   + ++E LL           V+ I+GMGG+GKTTLA+ +YND  V  HFD  AW  
Sbjct: 1   REDMIEALIEKLLEMS----DNLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVV 56

Query: 253 VSDDFDVKRLTKTILTSI-VASQNVGDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDD 311
           VS  +   RL K IL  + +   +  + + + L  ++ + L  K+FLLVLDDVW +N  D
Sbjct: 57  VSKTYTEFRLQKDILQELGLDDSDWVEKNESELAVKIKEALLRKRFLLVLDDVWEKN--D 114

Query: 312 WVQLRRPFEVGAPGSKIIVTTRNQEVAEIMGTVPSY--QLKKLSDNDCLAVFA----QHS 365
           W ++  PF  G  GS++IVTTR++ VA  MG   S   +++ L   +   +F+    +  
Sbjct: 115 WDKIGVPFPDGENGSRVIVTTRSESVAGRMG-GTSKPHEVESLEPEESWELFSNKVFEKE 173

Query: 366 LGSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSKIWELSEKRC--G 423
           L     LEE+ K+IV KC GLPLA + LGGLL  K   +EWE VL     EL+ +     
Sbjct: 174 LPPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNNELAGRDGLNE 233

Query: 424 IIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFL 470
           ++  L++SY  LP  LK+CF Y +LFP+DY   +E++I LW A GF+
Sbjct: 234 VLSILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFV 280

Length = 285
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain Back     alignment and domain information
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1367
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 100.0
PLN032101153 Resistant to P. syringae 6; Provisional 100.0
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 100.0
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 100.0
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 100.0
KOG0472565 consensus Leucine-rich repeat protein [Function un 99.92
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 99.91
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 99.9
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.87
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 99.87
KOG0472565 consensus Leucine-rich repeat protein [Function un 99.86
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.86
PLN03210 1153 Resistant to P. syringae 6; Provisional 99.85
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 99.85
PRK15387788 E3 ubiquitin-protein ligase SspH2; Provisional 99.52
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 99.51
KOG4237498 consensus Extracellular matrix protein slit, conta 99.51
KOG4237498 consensus Extracellular matrix protein slit, conta 99.43
PRK04841903 transcriptional regulator MalT; Provisional 99.38
PRK15370754 E3 ubiquitin-protein ligase SlrP; Provisional 99.29
PRK15370754 E3 ubiquitin-protein ligase SlrP; Provisional 99.28
PRK00411394 cdc6 cell division control protein 6; Reviewed 99.24
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 99.21
KOG0617264 consensus Ras suppressor protein (contains leucine 99.19
TIGR02928365 orc1/cdc6 family replication initiation protein. M 99.11
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 99.1
KOG0617264 consensus Ras suppressor protein (contains leucine 99.1
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 99.04
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 98.99
COG2909894 MalT ATP-dependent transcriptional regulator [Tran 98.97
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 98.96
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 98.94
PF05729166 NACHT: NACHT domain 98.86
PTZ001121164 origin recognition complex 1 protein; Provisional 98.85
COG3899849 Predicted ATPase [General function prediction only 98.7
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 98.63
PRK06893229 DNA replication initiation factor; Validated 98.59
PRK13342413 recombination factor protein RarA; Reviewed 98.58
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 98.56
COG2256436 MGS1 ATPase related to the helicase subunit of the 98.5
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 98.47
PRK05564313 DNA polymerase III subunit delta'; Validated 98.43
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 98.42
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 98.42
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 98.41
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 98.4
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 98.39
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 98.39
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 98.39
KOG4341483 consensus F-box protein containing LRR [General fu 98.37
PRK14949944 DNA polymerase III subunits gamma and tau; Provisi 98.36
PLN03150623 hypothetical protein; Provisional 98.36
PLN03150623 hypothetical protein; Provisional 98.36
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 98.36
PRK04195482 replication factor C large subunit; Provisional 98.36
KOG4341483 consensus F-box protein containing LRR [General fu 98.36
KOG1259490 consensus Nischarin, modulator of integrin alpha5 98.35
KOG0532 722 consensus Leucine-rich repeat (LRR) protein, conta 98.35
PRK12402337 replication factor C small subunit 2; Reviewed 98.35
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 98.31
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 98.29
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 98.28
TIGR02903615 spore_lon_C ATP-dependent protease, Lon family. Me 98.27
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 98.26
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 98.26
COG3903414 Predicted ATPase [General function prediction only 98.25
cd01128249 rho_factor Transcription termination factor rho is 98.25
PTZ00202550 tuzin; Provisional 98.24
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 98.24
PF13191185 AAA_16: AAA ATPase domain; PDB: 2V1U_A. 98.24
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 98.22
KOG1259490 consensus Nischarin, modulator of integrin alpha5 98.22
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 98.2
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 98.2
PRK00440319 rfc replication factor C small subunit; Reviewed 98.19
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 98.19
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 98.18
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 98.18
PF13173128 AAA_14: AAA domain 98.16
PLN03025319 replication factor C subunit; Provisional 98.16
PRK09376416 rho transcription termination factor Rho; Provisio 98.16
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 98.15
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 98.15
PRK07940394 DNA polymerase III subunit delta'; Validated 98.14
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 98.14
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 98.13
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 98.13
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 98.13
PRK08727233 hypothetical protein; Validated 98.12
PRK15386 426 type III secretion protein GogB; Provisional 98.12
KOG2028554 consensus ATPase related to the helicase subunit o 98.11
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 98.11
PRK07471365 DNA polymerase III subunit delta'; Validated 98.08
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 98.08
PRK13341725 recombination factor protein RarA/unknown domain f 98.06
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 98.04
PRK09112351 DNA polymerase III subunit delta'; Validated 98.04
PRK08084235 DNA replication initiation factor; Provisional 98.03
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 98.03
PRK08903227 DnaA regulatory inactivator Hda; Validated 98.02
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 98.01
PRK15386426 type III secretion protein GogB; Provisional 98.01
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 98.0
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 98.0
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 97.99
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 97.99
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 97.99
PRK09087226 hypothetical protein; Validated 97.98
KOG0532 722 consensus Leucine-rich repeat (LRR) protein, conta 97.97
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 97.94
PRK05642234 DNA replication initiation factor; Validated 97.93
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 97.93
COG2255332 RuvB Holliday junction resolvasome, helicase subun 97.92
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 97.91
TIGR00767415 rho transcription termination factor Rho. Members 97.9
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 97.89
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 97.88
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 97.87
KOG2227529 consensus Pre-initiation complex, subunit CDC6, AA 97.87
PF14516331 AAA_35: AAA-like domain 97.87
PRK14087450 dnaA chromosomal replication initiation protein; P 97.83
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 97.83
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 97.82
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.82
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 97.82
PRK11331459 5-methylcytosine-specific restriction enzyme subun 97.81
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 97.81
PHA02544316 44 clamp loader, small subunit; Provisional 97.8
PRK14971614 DNA polymerase III subunits gamma and tau; Provisi 97.77
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 97.76
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 97.74
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 97.73
PRK03992389 proteasome-activating nucleotidase; Provisional 97.69
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 97.68
CHL00181287 cbbX CbbX; Provisional 97.66
KOG0531414 consensus Protein phosphatase 1, regulatory subuni 97.63
KOG2543438 consensus Origin recognition complex, subunit 5 [R 97.62
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 97.61
PRK06620214 hypothetical protein; Validated 97.59
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 97.59
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 97.59
KOG0531414 consensus Protein phosphatase 1, regulatory subuni 97.58
TIGR00362405 DnaA chromosomal replication initiator protein Dna 97.57
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 97.53
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 97.53
KOG2982418 consensus Uncharacterized conserved protein [Funct 97.51
PRK07399314 DNA polymerase III subunit delta'; Validated 97.46
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 97.45
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 97.44
PRK00149450 dnaA chromosomal replication initiation protein; R 97.44
PRK12422445 chromosomal replication initiation protein; Provis 97.43
PRK14088440 dnaA chromosomal replication initiation protein; P 97.42
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 97.42
PRK05707328 DNA polymerase III subunit delta'; Validated 97.38
CHL00095821 clpC Clp protease ATP binding subunit 97.35
PF00004132 AAA: ATPase family associated with various cellula 97.31
PF05673249 DUF815: Protein of unknown function (DUF815); Inte 97.3
PRK14086617 dnaA chromosomal replication initiation protein; P 97.3
PRK06090319 DNA polymerase III subunit delta'; Validated 97.26
PRK08769319 DNA polymerase III subunit delta'; Validated 97.19
PRK10536262 hypothetical protein; Provisional 97.15
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 97.14
PRK08058329 DNA polymerase III subunit delta'; Validated 97.12
PTZ00361438 26 proteosome regulatory subunit 4-like protein; P 97.12
PRK10787784 DNA-binding ATP-dependent protease La; Provisional 97.11
PRK08116268 hypothetical protein; Validated 97.11
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 97.1
smart00382148 AAA ATPases associated with a variety of cellular 97.1
TIGR00763775 lon ATP-dependent protease La. This protein is ind 97.1
CHL00176638 ftsH cell division protein; Validated 97.1
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 97.07
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 97.07
KOG2004906 consensus Mitochondrial ATP-dependent protease PIM 97.04
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 97.04
KOG2982418 consensus Uncharacterized conserved protein [Funct 97.03
COG0593408 DnaA ATPase involved in DNA replication initiation 97.03
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 97.03
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 96.98
PRK08118167 topology modulation protein; Reviewed 96.97
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 96.94
PRK06871325 DNA polymerase III subunit delta'; Validated 96.93
PRK10865857 protein disaggregation chaperone; Provisional 96.92
TIGR00602637 rad24 checkpoint protein rad24. This family is bas 96.92
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 96.9
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 96.89
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 96.89
COG0542786 clpA ATP-binding subunits of Clp protease and DnaK 96.87
PF04665241 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 96.84
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 96.83
KOG2035351 consensus Replication factor C, subunit RFC3 [Cell 96.82
COG1373398 Predicted ATPase (AAA+ superfamily) [General funct 96.8
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 96.8
PRK13531498 regulatory ATPase RavA; Provisional 96.68
PRK08181269 transposase; Validated 96.66
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 96.64
cd01123235 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r 96.62
PRK10865857 protein disaggregation chaperone; Provisional 96.62
COG0466782 Lon ATP-dependent Lon protease, bacterial type [Po 96.61
COG2812515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 96.61
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 96.6
PRK07261171 topology modulation protein; Provisional 96.55
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 96.54
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 96.54
smart00763361 AAA_PrkA PrkA AAA domain. This is a family of PrkA 96.53
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 96.53
PRK12608380 transcription termination factor Rho; Provisional 96.48
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 96.45
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 96.44
PRK07993334 DNA polymerase III subunit delta'; Validated 96.42
PRK08939306 primosomal protein DnaI; Reviewed 96.4
PRK06964342 DNA polymerase III subunit delta'; Validated 96.4
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 96.38
PRK09361225 radB DNA repair and recombination protein RadB; Pr 96.33
KOG0730693 consensus AAA+-type ATPase [Posttranslational modi 96.29
PRK07952244 DNA replication protein DnaC; Validated 96.27
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 96.26
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 96.26
KOG3665 699 consensus ZYG-1-like serine/threonine protein kina 96.25
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 96.24
PRK06526254 transposase; Provisional 96.17
CHL00095821 clpC Clp protease ATP binding subunit 96.16
KOG0744423 consensus AAA+-type ATPase [Posttranslational modi 96.16
PF10443431 RNA12: RNA12 protein; InterPro: IPR018850 Mitochon 96.16
PRK06921266 hypothetical protein; Provisional 96.11
PRK04132846 replication factor C small subunit; Provisional 96.09
PRK09183259 transposase/IS protein; Provisional 96.09
TIGR02902531 spore_lonB ATP-dependent protease LonB. Members of 96.09
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 96.08
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 96.07
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 96.06
PRK12377248 putative replication protein; Provisional 96.06
TIGR02237209 recomb_radB DNA repair and recombination protein R 96.01
CHL00195489 ycf46 Ycf46; Provisional 96.0
KOG1514767 consensus Origin recognition complex, subunit 1, a 95.99
COG2607287 Predicted ATPase (AAA+ superfamily) [General funct 95.98
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 95.97
PF08423256 Rad51: Rad51; InterPro: IPR013632 This domain is f 95.93
KOG1051898 consensus Chaperone HSP104 and related ATP-depende 95.87
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 95.85
KOG3665699 consensus ZYG-1-like serine/threonine protein kina 95.84
PF13207121 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 95.83
PRK06835329 DNA replication protein DnaC; Validated 95.82
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 95.82
PRK06696223 uridine kinase; Validated 95.77
COG1484254 DnaC DNA replication protein [DNA replication, rec 95.75
cd01393226 recA_like RecA is a bacterial enzyme which has rol 95.74
PRK04296190 thymidine kinase; Provisional 95.72
COG0470325 HolB ATPase involved in DNA replication [DNA repli 95.71
KOG2228408 consensus Origin recognition complex, subunit 4 [R 95.71
KOG4579177 consensus Leucine-rich repeat (LRR) protein associ 95.71
cd00983325 recA RecA is a bacterial enzyme which has roles in 95.69
PRK05541176 adenylylsulfate kinase; Provisional 95.69
cd00544169 CobU Adenosylcobinamide kinase / adenosylcobinamid 95.68
TIGR02012321 tigrfam_recA protein RecA. This model describes or 95.67
PRK08699325 DNA polymerase III subunit delta'; Validated 95.64
cd01133274 F1-ATPase_beta F1 ATP synthase beta subunit, nucle 95.61
PF0056022 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le 95.57
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 95.57
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 95.53
PHA02244383 ATPase-like protein 95.53
PRK05800170 cobU adenosylcobinamide kinase/adenosylcobinamide- 95.51
PRK15455644 PrkA family serine protein kinase; Provisional 95.45
PLN03187344 meiotic recombination protein DMC1 homolog; Provis 95.44
TIGR02238313 recomb_DMC1 meiotic recombinase Dmc1. This model d 95.44
cd01394218 radB RadB. The archaeal protein radB shares simila 95.41
KOG4579177 consensus Leucine-rich repeat (LRR) protein associ 95.39
KOG1947482 consensus Leucine rich repeat proteins, some prote 95.34
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 95.34
PRK09354349 recA recombinase A; Provisional 95.29
PF07693325 KAP_NTPase: KAP family P-loop domain; InterPro: IP 95.23
KOG1969877 consensus DNA replication checkpoint protein CHL12 95.23
PF14532138 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 95.22
PRK15429686 formate hydrogenlyase transcriptional activator Fh 95.21
COG0572218 Udk Uridine kinase [Nucleotide transport and metab 95.2
KOG0731774 consensus AAA+-type ATPase containing the peptidas 95.18
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 95.15
KOG1947482 consensus Leucine rich repeat proteins, some prote 95.14
TIGR02239316 recomb_RAD51 DNA repair protein RAD51. This eukary 95.14
PRK08233182 hypothetical protein; Provisional 95.08
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 95.05
PRK04301317 radA DNA repair and recombination protein RadA; Va 95.03
PRK05022509 anaerobic nitric oxide reductase transcription reg 95.01
COG0468279 RecA RecA/RadA recombinase [DNA replication, recom 94.99
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 94.97
KOG0734752 consensus AAA+-type ATPase containing the peptidas 94.96
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 94.93
KOG0735952 consensus AAA+-type ATPase [Posttranslational modi 94.91
cd00561159 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B 94.9
PF07724171 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR 94.81
COG0542786 clpA ATP-binding subunits of Clp protease and DnaK 94.79
cd03214180 ABC_Iron-Siderophores_B12_Hemin ABC transporters, 94.77
PRK13695174 putative NTPase; Provisional 94.74
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 94.74
cd03247178 ABCC_cytochrome_bd The CYD subfamily implicated in 94.73
COG4608268 AppF ABC-type oligopeptide transport system, ATPas 94.72
COG0464494 SpoVK ATPases of the AAA+ class [Posttranslational 94.69
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 94.68
cd03228171 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein 94.65
PRK10733644 hflB ATP-dependent metalloprotease; Reviewed 94.65
TIGR02236310 recomb_radA DNA repair and recombination protein R 94.65
COG1102179 Cmk Cytidylate kinase [Nucleotide transport and me 94.61
PLN03186342 DNA repair protein RAD51 homolog; Provisional 94.6
cd03238176 ABC_UvrA The excision repair protein UvrA; Nucleot 94.6
PRK07132299 DNA polymerase III subunit delta'; Validated 94.58
COG0563178 Adk Adenylate kinase and related kinases [Nucleoti 94.58
COG2884223 FtsE Predicted ATPase involved in cell division [C 94.57
PRK13949169 shikimate kinase; Provisional 94.53
cd03221144 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is 94.53
PF00154322 RecA: recA bacterial DNA recombination protein; In 94.5
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 94.49
COG1618179 Predicted nucleotide kinase [Nucleotide transport 94.48
COG1121254 ZnuC ABC-type Mn/Zn transport systems, ATPase comp 94.45
cd03223166 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass 94.42
cd03222177 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi 94.39
TIGR00959428 ffh signal recognition particle protein. This mode 94.36
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 94.34
PRK07667193 uridine kinase; Provisional 94.25
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 94.24
PRK00771437 signal recognition particle protein Srp54; Provisi 94.16
PTZ00301210 uridine kinase; Provisional 94.16
PRK06067234 flagellar accessory protein FlaH; Validated 94.13
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 94.12
PRK10867433 signal recognition particle protein; Provisional 94.12
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 94.08
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 94.06
cd03216163 ABC_Carb_Monos_I This family represents the domain 94.01
TIGR01817534 nifA Nif-specific regulatory protein. This model r 94.01
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 94.0
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 94.0
PTZ00494664 tuzin-like protein; Provisional 93.98
cd0201969 NK Nucleoside/nucleotide kinase (NK) is a protein 93.94
cd03281213 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS 93.9
PTZ00035337 Rad51 protein; Provisional 93.9
TIGR00390441 hslU ATP-dependent protease HslVU, ATPase subunit. 93.89
PRK10820520 DNA-binding transcriptional regulator TyrR; Provis 93.89
PRK11608326 pspF phage shock protein operon transcriptional ac 93.85
PF13306129 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ 93.83
PRK13948182 shikimate kinase; Provisional 93.79
cd03246173 ABCC_Protease_Secretion This family represents the 93.78
PF13238129 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB 93.78
TIGR00235207 udk uridine kinase. Model contains a number of lon 93.72
PRK05480209 uridine/cytidine kinase; Provisional 93.71
PF00485194 PRK: Phosphoribulokinase / Uridine kinase family; 93.69
PRK06547172 hypothetical protein; Provisional 93.67
COG1136226 SalX ABC-type antimicrobial peptide transport syst 93.62
cd02025220 PanK Pantothenate kinase (PanK) catalyzes the phos 93.58
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 93.58
TIGR00064272 ftsY signal recognition particle-docking protein F 93.55
PF05659147 RPW8: Arabidopsis broad-spectrum mildew resistance 93.54
TIGR02974329 phageshock_pspF psp operon transcriptional activat 93.53
PF01583156 APS_kinase: Adenylylsulphate kinase; InterPro: IPR 93.51
cd03115173 SRP The signal recognition particle (SRP) mediates 93.51
PRK06002450 fliI flagellum-specific ATP synthase; Validated 93.5
PF08298358 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi 93.5
PF13671143 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 93.47
TIGR00382413 clpX endopeptidase Clp ATP-binding regulatory subu 93.46
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 93.42
KOG2123388 consensus Uncharacterized conserved protein [Funct 93.4
TIGR00708173 cobA cob(I)alamin adenosyltransferase. Alternate n 93.38
KOG1532366 consensus GTPase XAB1, interacts with DNA repair p 93.35
PF00006215 ATP-synt_ab: ATP synthase alpha/beta family, nucle 93.35
COG1126240 GlnQ ABC-type polar amino acid transport system, A 93.33
PRK05439311 pantothenate kinase; Provisional 93.29
PRK14974336 cell division protein FtsY; Provisional 93.29
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 93.27
COG1428216 Deoxynucleoside kinases [Nucleotide transport and 93.26
KOG0728404 consensus 26S proteasome regulatory complex, ATPas 93.26
PRK06762166 hypothetical protein; Provisional 93.24
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309127 Torsin: Torsin; InterPro: IPR010448 This family co 93.22
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 93.21
PF08433270 KTI12: Chromatin associated protein KTI12 ; InterP 93.2
TIGR01069771 mutS2 MutS2 family protein. Function of MutS2 is u 93.17
PF12775272 AAA_7: P-loop containing dynein motor region D3; P 93.14
TIGR02858270 spore_III_AA stage III sporulation protein AA. Mem 93.14
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 93.13
cd03230173 ABC_DR_subfamily_A This family of ATP-binding prot 93.12
PRK09270229 nucleoside triphosphate hydrolase domain-containin 93.06
cd01125239 repA Hexameric Replicative Helicase RepA. RepA is 93.04
PF07726131 AAA_3: ATPase family associated with various cellu 93.04
PHA00729226 NTP-binding motif containing protein 93.04
KOG0729435 consensus 26S proteasome regulatory complex, ATPas 93.01
KOG2170344 consensus ATPase of the AAA+ superfamily [General 92.98
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 92.96
PTZ00185574 ATPase alpha subunit; Provisional 92.92
cd01135276 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) 92.9
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 92.89
TIGR00554290 panK_bact pantothenate kinase, bacterial type. Sho 92.88
PTZ00088229 adenylate kinase 1; Provisional 92.88
TIGR00150133 HI0065_YjeE ATPase, YjeE family. Members of this f 92.87
PRK05201443 hslU ATP-dependent protease ATP-binding subunit Hs 92.83
PF00910107 RNA_helicase: RNA helicase; InterPro: IPR000605 He 92.81
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 92.8
PRK03839180 putative kinase; Provisional 92.76
PF1350417 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO 92.73
KOG0739439 consensus AAA+-type ATPase [Posttranslational modi 92.69
TIGR01360188 aden_kin_iso1 adenylate kinase, isozyme 1 subfamil 92.59
PRK09519790 recA DNA recombination protein RecA; Reviewed 92.54
TIGR03575340 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti 92.52
cd03283199 ABC_MutS-like MutS-like homolog in eukaryotes. The 92.52
cd03285222 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS 92.51
PRK00625173 shikimate kinase; Provisional 92.5
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 92.43
PRK09280463 F0F1 ATP synthase subunit beta; Validated 92.41
PRK05917290 DNA polymerase III subunit delta'; Validated 92.41
TIGR03498418 FliI_clade3 flagellar protein export ATPase FliI. 92.39
PRK05986191 cob(I)alamin adenolsyltransferase/cobinamide ATP-d 92.34
PRK04040188 adenylate kinase; Provisional 92.33
PRK08927442 fliI flagellum-specific ATP synthase; Validated 92.33
cd03282204 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS 92.3
PRK06217183 hypothetical protein; Validated 92.29
PRK10923469 glnG nitrogen regulation protein NR(I); Provisiona 92.29
PRK14723767 flhF flagellar biosynthesis regulator FlhF; Provis 92.27
cd03217200 ABC_FeS_Assembly ABC-type transport system involve 92.23
COG4088261 Predicted nucleotide kinase [Nucleotide transport 92.18
PRK12597461 F0F1 ATP synthase subunit beta; Provisional 92.16
PRK10751173 molybdopterin-guanine dinucleotide biosynthesis pr 92.15
COG1066456 Sms Predicted ATP-dependent serine protease [Postt 92.14
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 92.14
KOG0727408 consensus 26S proteasome regulatory complex, ATPas 92.1
PRK08972444 fliI flagellum-specific ATP synthase; Validated 92.07
PRK08149428 ATP synthase SpaL; Validated 92.04
cd02024187 NRK1 Nicotinamide riboside kinase (NRK) is an enzy 91.98
PRK00889175 adenylylsulfate kinase; Provisional 91.97
PRK04328249 hypothetical protein; Provisional 91.91
PRK00131175 aroK shikimate kinase; Reviewed 91.87
cd01136326 ATPase_flagellum-secretory_path_III Flagellum-spec 91.86
smart00534185 MUTSac ATPase domain of DNA mismatch repair MUTS f 91.85
cd00267157 ABC_ATPase ABC (ATP-binding cassette) transporter 91.84
COG0465596 HflB ATP-dependent Zn proteases [Posttranslational 91.81
cd01132274 F1_ATPase_alpha F1 ATP synthase alpha, central dom 91.81
TIGR01359183 UMP_CMP_kin_fam UMP-CMP kinase family. This subfam 91.79
cd02023198 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. 91.75
PRK06793432 fliI flagellum-specific ATP synthase; Validated 91.72
TIGR02322179 phosphon_PhnN phosphonate metabolism protein/1,5-b 91.69
PF01078206 Mg_chelatase: Magnesium chelatase, subunit ChlI; I 91.65
PRK07594433 type III secretion system ATPase SsaN; Validated 91.65
PRK05922434 type III secretion system ATPase; Validated 91.63
COG0714329 MoxR-like ATPases [General function prediction onl 91.63
PRK15453290 phosphoribulokinase; Provisional 91.62
PF00625183 Guanylate_kin: Guanylate kinase; InterPro: IPR0081 91.59
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 91.58
cd03284216 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr 91.57
TIGR02915445 PEP_resp_reg putative PEP-CTERM system response re 91.57
cd03287222 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS 91.51
COG0396251 sufC Cysteine desulfurase activator ATPase [Posttr 91.5
PRK13765637 ATP-dependent protease Lon; Provisional 91.47
PRK09099441 type III secretion system ATPase; Provisional 91.46
cd00227175 CPT Chloramphenicol (Cm) phosphotransferase (CPT). 91.44
COG2842297 Uncharacterized ATPase, putative transposase [Gene 91.39
PRK15115444 response regulator GlrR; Provisional 91.39
TIGR03263180 guanyl_kin guanylate kinase. Members of this famil 91.37
cd02021150 GntK Gluconate kinase (GntK) catalyzes the phospho 91.31
PF03308266 ArgK: ArgK protein; InterPro: IPR005129 Bacterial 91.29
cd02028179 UMPK_like Uridine monophosphate kinase_like (UMPK_ 91.27
PF13306129 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ 91.24
PF13479213 AAA_24: AAA domain 91.23
COG1124252 DppF ABC-type dipeptide/oligopeptide/nickel transp 91.22
cd03369207 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty 91.17
COG1224450 TIP49 DNA helicase TIP49, TBP-interacting protein 91.16
cd03243202 ABC_MutS_homologs The MutS protein initiates DNA m 91.16
COG2019189 AdkA Archaeal adenylate kinase [Nucleotide transpo 91.12
PRK00279215 adk adenylate kinase; Reviewed 91.07
cd03213194 ABCG_EPDR ABCG transporters are involved in eye pi 91.07
COG1936180 Predicted nucleotide kinase (related to CMP and AM 91.05
TIGR00764608 lon_rel lon-related putative ATP-dependent proteas 91.04
PRK05688451 fliI flagellum-specific ATP synthase; Validated 91.02
KOG0736953 consensus Peroxisome assembly factor 2 containing 91.0
PF13481193 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. 90.99
PRK03846198 adenylylsulfate kinase; Provisional 90.99
PRK06936439 type III secretion system ATPase; Provisional 90.98
cd02020147 CMPK Cytidine monophosphate kinase (CMPK) catalyze 90.97
PRK07721438 fliI flagellum-specific ATP synthase; Validated 90.97
CHL002062281 ycf2 Ycf2; Provisional 90.84
TIGR03305449 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit 90.83
PF0056022 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le 90.83
COG0194191 Gmk Guanylate kinase [Nucleotide transport and met 90.8
cd00820107 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC 90.8
PF1324576 AAA_19: Part of AAA domain 90.8
PF03205140 MobB: Molybdopterin guanine dinucleotide synthesis 90.79
PRK13947171 shikimate kinase; Provisional 90.78
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 90.76
PRK00300205 gmk guanylate kinase; Provisional 90.75
PRK00409782 recombination and DNA strand exchange inhibitor pr 90.71
KOG0735952 consensus AAA+-type ATPase [Posttranslational modi 90.68
PRK12339197 2-phosphoglycerate kinase; Provisional 90.68
cd02029277 PRK_like Phosphoribulokinase-like (PRK-like) is a 90.65
PF03193161 DUF258: Protein of unknown function, DUF258; Inter 90.65
PRK07276290 DNA polymerase III subunit delta'; Validated 90.62
PRK08533230 flagellar accessory protein FlaH; Reviewed 90.57
PF08477119 Miro: Miro-like protein; InterPro: IPR013684 Mitoc 90.54
TIGR01041458 ATP_syn_B_arch ATP synthase archaeal, B subunit. A 90.53
cd04106162 Rab23_lke Rab23-like subfamily. Rab23 is a member 90.48
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 90.47
PRK11388638 DNA-binding transcriptional regulator DhaR; Provis 90.47
PRK07196434 fliI flagellum-specific ATP synthase; Validated 90.46
cd00071137 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. 90.42
PLN02348395 phosphoribulokinase 90.39
PRK14737186 gmk guanylate kinase; Provisional 90.38
TIGR03522301 GldA_ABC_ATP gliding motility-associated ABC trans 90.38
PRK10416318 signal recognition particle-docking protein FtsY; 90.37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-82  Score=782.08  Aligned_cols=611  Identities=29%  Similarity=0.465  Sum_probs=498.1

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCCCCCCCc
Q 000660           25 VLFFARQKEIEADLMRWANMLEMIKAVLDDAEEKRRTAPSVNLWLGELQNLAYDVEDLLDEFQTEAFRRRLPLGNGEPAA  104 (1367)
Q Consensus        25 ~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~~yd~ed~lD~~~~~~~~~~~~~~~~~~~~  104 (1367)
                      .+++....|+++.+..|++.|..++.+++||++++.....+..|.+.+++++|++||.++.|..+....+...       
T Consensus        17 ~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~-------   89 (889)
T KOG4658|consen   17 NRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAND-------   89 (889)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------
Confidence            3445556788999999999999999999999999998899999999999999999999999999887654321       


Q ss_pred             CCCCCCCCCCCCcccccccccccccccCCCchhhHHHHHHHHHHHHHHHHHHhhcccCCccccCCCCC--CCCCCCCCCC
Q 000660          105 AHDQPSSSHTRPSKLRKFIHTCFTIFTPQSTQFDYDLMSKIKEIDSRFQEIVTKKNLLDLKESSAGGS--KKASQRPETT  182 (1367)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~  182 (1367)
                       .      ........+..  |+.       .+.++.+..+..+.+++..+......++.........  +......++.
T Consensus        90 -~------l~~~~~~~~~~--c~~-------~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~  153 (889)
T KOG4658|consen   90 -L------LSTRSVERQRL--CLC-------GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETR  153 (889)
T ss_pred             -H------hhhhHHHHHHH--hhh-------hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccC
Confidence             0      00000111111  211       3456677777777777777777766665443221111  1111223344


Q ss_pred             CccccCcccccchhHHHHHHHHhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHcCcc-cccccceEEEEEeCCccCHHH
Q 000660          183 SLVDEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDKQ-VQDHFDLKAWTCVSDDFDVKR  261 (1367)
Q Consensus       183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~  261 (1367)
                      +...+.. ||.+..++++.+.|.+++      ..+++|+||||+||||||+.++|+.. ++.+|+.++||+||++++...
T Consensus       154 ~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~  226 (889)
T KOG4658|consen  154 PIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRK  226 (889)
T ss_pred             CCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHh
Confidence            4445555 999999999999998763      28999999999999999999999987 999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCC-CCCChHHHHHHHHHHhCCCceEEEEEcCCCCCchhhhhhccccCCCCCCcEEEEEcCchhHHhh
Q 000660          262 LTKTILTSIVASQNV-GDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEI  340 (1367)
Q Consensus       262 ~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~  340 (1367)
                      ++.+|++.++..... .....++++..|.+.|++|||+|||||||+.  .+|+.+..++|....||||++|||++.|+..
T Consensus       227 iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~  304 (889)
T KOG4658|consen  227 IQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGR  304 (889)
T ss_pred             HHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhc
Confidence            999999999874432 2334578999999999999999999999998  6799999999999999999999999999998


Q ss_pred             -hCCCCceeCCCCChHHHHHHHHhhhcC----CcchHHHHHHHHHHhcCCChHHHHHHHhhhcCCCCHHHHHHHHhchhh
Q 000660          341 -MGTVPSYQLKKLSDNDCLAVFAQHSLG----SHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWERVLCSKIW  415 (1367)
Q Consensus       341 -~~~~~~~~l~~L~~~~~~~lf~~~~~~----~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~  415 (1367)
                       +++...++++.|+++|||+||++.||.    ..+.++++|++++++|+|+|||++++|+.|+.+++.++|+++.+...+
T Consensus       305 ~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s  384 (889)
T KOG4658|consen  305 AMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKS  384 (889)
T ss_pred             cccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccc
Confidence             778889999999999999999999987    345589999999999999999999999999999999999999987655


Q ss_pred             hc----cccccCchHHHHHhhhCCChhHHHHhhhhccCCCCcccCHHHHHHHHHHcCCccCCCCCCChHHHHHHHHHHHH
Q 000660          416 EL----SEKRCGIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLWCASGFLDHKEDENPSEDLGRDFFKELR  491 (1367)
Q Consensus       416 ~~----~~~~~~i~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~  491 (1367)
                      .+    ++..+.++++|++||+.||+++|.||+|||+||+||+|+++.|+.+||||||+++..++.+++++|++|+.+|+
T Consensus       385 ~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV  464 (889)
T KOG4658|consen  385 SLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELV  464 (889)
T ss_pred             cccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHH
Confidence            42    23356899999999999999999999999999999999999999999999999987778899999999999999


Q ss_pred             hcCcccccc--CCCCceeehHHHHHHHHHhhc-----cceEEeeccc--ccccccccCCceeEEEEEeCCcccccccccc
Q 000660          492 SRSFLQQSA--TDASLFVMHDLINDLARWAAG-----ETYFTLEYTS--EVNKQQCFSRNLRHLSYIRGDYDGVQRFGDL  562 (1367)
Q Consensus       492 ~~~ll~~~~--~~~~~~~mhdlv~~~a~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~  562 (1367)
                      +++|++..+  +....|+|||+|||||.++++     ++..++....  ........+..+||++++.+....   ...-
T Consensus       465 ~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~  541 (889)
T KOG4658|consen  465 RASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGS  541 (889)
T ss_pred             HHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCC
Confidence            999999865  345789999999999999999     4544444320  001122334678999998875422   2334


Q ss_pred             ccCCcccEEeeccccCCCCCCCCcccccccc-CCCccceEEcCCCC-ccccCccccCceecCCCCcchhhHHhhhhcCCC
Q 000660          563 YDIQHLRTFLPVMLTNSGPGYLAPSILPKLL-KPQRLRAFSLRGYH-IFELPDSVGDLSTDGSSSREAETEMGMLDMLKP  640 (1367)
Q Consensus       563 ~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~-i~~lP~~i~~L~~~~~~~~~~~~~~~~l~~L~~  640 (1367)
                      ..+++|+||+......     ....+..++| .++.||+|||++|. +.+||++|++|.                     
T Consensus       542 ~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li---------------------  595 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV---------------------  595 (889)
T ss_pred             CCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh---------------------
Confidence            4566899998765431     1234556677 89999999999776 899999999998                     


Q ss_pred             CCCcceeEEcccCCCCCCcccCCCCCCcccEEEEecCCCCCCCCC-CCCCCCCCceeecCC
Q 000660          641 HTNLEQFCIKGYGGMKFPTWLGDSSFSNLVTLKFKNCDMCTALPS-VGQLPSLKHLVVCGM  700 (1367)
Q Consensus       641 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~Ls~~~~~~~lp~-l~~L~~L~~L~l~~~  700 (1367)
                        +||+|++++..+..+|..+++  |..|.+|++..+.....+|. ...|++||+|.+...
T Consensus       596 --~LryL~L~~t~I~~LP~~l~~--Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  596 --HLRYLDLSDTGISHLPSGLGN--LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             --hhhcccccCCCccccchHHHH--HHhhheeccccccccccccchhhhcccccEEEeecc
Confidence              999999999999999999987  99999999999987777885 555999999998754

>PLN03210 Resistant to P Back     alignment and domain information
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>COG3899 Predicted ATPase [General function prediction only] Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG3903 Predicted ATPase [General function prediction only] Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>PTZ00202 tuzin; Provisional Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14516 AAA_35: AAA-like domain Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>PRK08118 topology modulation protein; Reviewed Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>TIGR00602 rad24 checkpoint protein rad24 Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>PRK07261 topology modulation protein; Provisional Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>smart00763 AAA_PrkA PrkA AAA domain Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PRK12608 transcription termination factor Rho; Provisional Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>CHL00195 ycf46 Ycf46; Provisional Back     alignment and domain information
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] Back     alignment and domain information
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 Back     alignment and domain information
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>PRK06696 uridine kinase; Validated Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] Back     alignment and domain information
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK05541 adenylylsulfate kinase; Provisional Back     alignment and domain information
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain Back     alignment and domain information
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated Back     alignment and domain information
>PRK15455 PrkA family serine protein kinase; Provisional Back     alignment and domain information
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional Back     alignment and domain information
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals Back     alignment and domain information
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>TIGR02239 recomb_RAD51 DNA repair protein RAD51 Back     alignment and domain information
>PRK08233 hypothetical protein; Provisional Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>PRK04301 radA DNA repair and recombination protein RadA; Validated Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Back     alignment and domain information
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis Back     alignment and domain information
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export Back     alignment and domain information
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed Back     alignment and domain information
>TIGR02236 recomb_radA DNA repair and recombination protein RadA Back     alignment and domain information
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN03186 DNA repair protein RAD51 homolog; Provisional Back     alignment and domain information
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>PRK07132 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] Back     alignment and domain information
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK13949 shikimate kinase; Provisional Back     alignment and domain information
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth Back     alignment and domain information
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response [] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome Back     alignment and domain information
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>PRK07667 uridine kinase; Provisional Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PTZ00301 uridine kinase; Provisional Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PTZ00494 tuzin-like protein; Provisional Back     alignment and domain information
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars Back     alignment and domain information
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes Back     alignment and domain information
>PTZ00035 Rad51 protein; Provisional Back     alignment and domain information
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit Back     alignment and domain information
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional Back     alignment and domain information
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Back     alignment and domain information
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A Back     alignment and domain information
>PRK13948 shikimate kinase; Provisional Back     alignment and domain information
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain Back     alignment and domain information
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C Back     alignment and domain information
>TIGR00235 udk uridine kinase Back     alignment and domain information
>PRK05480 uridine/cytidine kinase; Provisional Back     alignment and domain information
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2 Back     alignment and domain information
>PRK06547 hypothetical protein; Provisional Back     alignment and domain information
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>PRK06002 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length Back     alignment and domain information
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B Back     alignment and domain information
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00708 cobA cob(I)alamin adenosyltransferase Back     alignment and domain information
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] Back     alignment and domain information
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK05439 pantothenate kinase; Provisional Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06762 hypothetical protein; Provisional Back     alignment and domain information
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II [] Back     alignment and domain information
>TIGR01069 mutS2 MutS2 family protein Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>TIGR02858 spore_III_AA stage III sporulation protein AA Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity Back     alignment and domain information
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed Back     alignment and domain information
>cd01125 repA Hexameric Replicative Helicase RepA Back     alignment and domain information
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PTZ00185 ATPase alpha subunit; Provisional Back     alignment and domain information
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>TIGR00554 panK_bact pantothenate kinase, bacterial type Back     alignment and domain information
>PTZ00088 adenylate kinase 1; Provisional Back     alignment and domain information
>TIGR00150 HI0065_YjeE ATPase, YjeE family Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>PRK03839 putative kinase; Provisional Back     alignment and domain information
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D Back     alignment and domain information
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily Back     alignment and domain information
>PRK09519 recA DNA recombination protein RecA; Reviewed Back     alignment and domain information
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic Back     alignment and domain information
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes Back     alignment and domain information
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes Back     alignment and domain information
>PRK00625 shikimate kinase; Provisional Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>PRK09280 F0F1 ATP synthase subunit beta; Validated Back     alignment and domain information
>PRK05917 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI Back     alignment and domain information
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated Back     alignment and domain information
>PRK04040 adenylate kinase; Provisional Back     alignment and domain information
>PRK08927 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes Back     alignment and domain information
>PRK06217 hypothetical protein; Validated Back     alignment and domain information
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component Back     alignment and domain information
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK12597 F0F1 ATP synthase subunit beta; Provisional Back     alignment and domain information
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional Back     alignment and domain information
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08972 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK08149 ATP synthase SpaL; Validated Back     alignment and domain information
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+) Back     alignment and domain information
>PRK00889 adenylylsulfate kinase; Provisional Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>PRK00131 aroK shikimate kinase; Reviewed Back     alignment and domain information
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein Back     alignment and domain information
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family Back     alignment and domain information
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain Back     alignment and domain information
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family Back     alignment and domain information
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 Back     alignment and domain information
>PRK06793 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN Back     alignment and domain information
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX Back     alignment and domain information
>PRK07594 type III secretion system ATPase SsaN; Validated Back     alignment and domain information
>PRK05922 type III secretion system ATPase; Validated Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>PRK15453 phosphoribulokinase; Provisional Back     alignment and domain information
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2 Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes Back     alignment and domain information
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator Back     alignment and domain information
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes Back     alignment and domain information
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13765 ATP-dependent protease Lon; Provisional Back     alignment and domain information
>PRK09099 type III secretion system ATPase; Provisional Back     alignment and domain information
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) Back     alignment and domain information
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only] Back     alignment and domain information
>PRK15115 response regulator GlrR; Provisional Back     alignment and domain information
>TIGR03263 guanyl_kin guanylate kinase Back     alignment and domain information
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate Back     alignment and domain information
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components Back     alignment and domain information
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 Back     alignment and domain information
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A Back     alignment and domain information
>PF13479 AAA_24: AAA domain Back     alignment and domain information
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) Back     alignment and domain information
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] Back     alignment and domain information
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch Back     alignment and domain information
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK00279 adk adenylate kinase; Reviewed Back     alignment and domain information
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) Back     alignment and domain information
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>PRK05688 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C Back     alignment and domain information
>PRK03846 adenylylsulfate kinase; Provisional Back     alignment and domain information
>PRK06936 type III secretion system ATPase; Provisional Back     alignment and domain information
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor Back     alignment and domain information
>PRK07721 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>CHL00206 ycf2 Ycf2; Provisional Back     alignment and domain information
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta Back     alignment and domain information
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A Back     alignment and domain information
>PRK13947 shikimate kinase; Provisional Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>PRK00300 gmk guanylate kinase; Provisional Back     alignment and domain information
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12339 2-phosphoglycerate kinase; Provisional Back     alignment and domain information
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes Back     alignment and domain information
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis Back     alignment and domain information
>PRK07276 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases Back     alignment and domain information
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit Back     alignment and domain information
>cd04106 Rab23_lke Rab23-like subfamily Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional Back     alignment and domain information
>PRK07196 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 Back     alignment and domain information
>PLN02348 phosphoribulokinase Back     alignment and domain information
>PRK14737 gmk guanylate kinase; Provisional Back     alignment and domain information
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1367
1z6t_A591 Structure Of The Apoptotic Protease-activating Fact 3e-04
3iza_B1263 Structure Of An Apoptosome-Procaspase-9 Card Comple 4e-04
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1 Bound To Adp Length = 591 Back     alignment and structure 
Iteration: 1

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 27/180 (15%)
Query: 298 LLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAE-IMGTVPSY------QLK 350
           LL+LDDVW    D WV      +      +I++TTR++ V + +MG  P Y       L 
Sbjct: 239 LLILDDVW----DSWV-----LKAFDSQCQILLTTRDKSVTDSVMG--PKYVVPVESSLG 287
Query: 351 KLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWE-RV 409
           K    + L++F          L E    I+ +C G PL    +G LLR   +R E+  + 
Sbjct: 288 KEKGLEILSLFVNMKKAD---LPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQ 344
Query: 410 LCSKIWELSEKRC-----GIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEEEEIILLW 464
           L +K ++   K        +  A+++S   L   +K  +   S+  KD +   + + +LW
Sbjct: 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW 404

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1367
1z6t_A591 APAF-1, apoptotic protease activating factor 1; ca 1e-130
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 1e-103
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-56
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 1e-24
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 5e-18
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 9e-16
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 6e-07
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 9e-22
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 3e-15
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 1e-13
4eco_A 636 Uncharacterized protein; leucine-rich repeats, pro 8e-11
4ecn_A 876 Leucine-rich repeat protein; leucine-rich repeats, 1e-14
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 4e-14
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 2e-11
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 1e-14
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 2e-13
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 1e-11
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 8e-14
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 8e-14
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 4e-11
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 1e-10
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 5e-13
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 1e-12
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 3e-12
3t6q_A 606 CD180 antigen; protein-protein complex, leucine ri 2e-06
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 3e-05
1o6v_A466 Internalin A; bacterial infection, extracellular r 6e-12
1o6v_A466 Internalin A; bacterial infection, extracellular r 1e-11
1o6v_A 466 Internalin A; bacterial infection, extracellular r 6e-05
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 5e-11
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 5e-11
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 3e-10
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 2e-06
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 6e-11
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 3e-10
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 1e-08
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 7e-08
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 7e-11
3vq2_A 606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 1e-10
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 6e-09
3fxi_A605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 8e-11
3fxi_A 605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 3e-08
3fxi_A 605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 2e-06
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 1e-10
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 1e-10
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 2e-10
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 8e-10
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 2e-10
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 4e-09
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 2e-10
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 3e-09
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 3e-05
2id5_A 477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 3e-10
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 5e-10
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 2e-09
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 1e-07
2z63_A 570 TOLL-like receptor 4, variable lymphocyte recepto; 1e-05
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 6e-10
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 8e-05
3jqh_A167 C-type lectin domain family 4 member M; DC-signr, 7e-10
3jqh_A167 C-type lectin domain family 4 member M; DC-signr, 3e-06
4fmz_A347 Internalin; leucine rich repeat, structural genomi 1e-09
4fmz_A347 Internalin; leucine rich repeat, structural genomi 1e-04
3qfl_A115 MLA10; coiled-coil, (CC) domain, NLRS, nucleotide- 2e-09
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 1e-08
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 4e-08
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 2e-07
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 6e-06
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 2e-07
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 3e-07
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 2e-07
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 2e-04
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 2e-07
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 2e-06
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 2e-06
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 3e-06
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 3e-06
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 9e-06
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 6e-06
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 2e-05
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 9e-06
4ezg_A197 Putative uncharacterized protein; internalin-A, le 1e-05
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 2e-05
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 4e-05
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 5e-05
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 1e-04
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 1e-04
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 2e-04
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 3e-04
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 3e-04
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 5e-04
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 8e-04
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 Back     alignment and structure
 Score =  415 bits (1067), Expect = e-130
 Identities = 82/532 (15%), Positives = 170/532 (31%), Gaps = 66/532 (12%)

Query: 57  EKRRTAPSVNLWLGELQNLAYDVEDLLDEFQTEAFRRRLPLGNGEPAAAHDQPSSSHTRP 116
           + +     +       +++      ++D   ++ F            +  ++  +  T+ 
Sbjct: 2   DAKARNCLLQHREALEKDI--KTSYIMDHMISDGFLTI---------SEEEKVRNEPTQQ 50

Query: 117 SKLRKFIHTCFTIFTPQSTQFDYDLM-SKIKEIDSRFQEIVTKKNLLDLKESSAGGSKKA 175
            +    I             F   L+    K++ +   + +   +    K+S +G +   
Sbjct: 51  QRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYV 110

Query: 176 SQRPETTSLVDEAKVY-GRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQL 234
                   +     V+  R+     + + L        G    + I GM G GK+ LA  
Sbjct: 111 RTVLCEGGVPQRPVVFVTRKKLVNAIQQKLS----KLKGEPGWVTIHGMAGCGKSVLAAE 166

Query: 235 VYNDKQVQDHF--DLKAWTCVSDDFDVKRLTKTI-----LTSIVASQNVGDPSLNSLQKE 287
              D  + +        W  V        L K       L    +       ++   +  
Sbjct: 167 AVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDR 226

Query: 288 LSKQLSGK--KFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVAEIMGTVP 345
           L   +  K  + LL+LDDVW+             +      +I++TTR++ V + +    
Sbjct: 227 LRILMLRKHPRSLLILDDVWDSWV---------LKAFDSQCQILLTTRDKSVTDSVMGPK 277

Query: 346 S--YQLKKLSDNDCLAVFAQHSLGSHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDR 403
                   L     L + +         L E    I+ +C G PL    +G LLR   +R
Sbjct: 278 YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR 337

Query: 404 RE-WERVLCSKIWELSEK-----RCGIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEE 457
            E + + L +K ++   K        +  A+++S   L   +K  +   S+  KD +   
Sbjct: 338 WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPT 397

Query: 458 EEIILLWCASGFLDHKEDENPSEDLGRDFFKELRSRSFLQQSATD-ASLFVMHDLINDLA 516
           + + +LW                +   D  +E  ++S L       +  + +HDL  D  
Sbjct: 398 KVLCILWDM------------ETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFL 445

Query: 517 RWAAGETYFTLEYTSEVNKQQCFSRNLRHLSYIRGDYDGVQRFGDLYDIQHL 568
                +    L+       ++  ++  R+        D       +Y    L
Sbjct: 446 T---EKNCSQLQD----LHKKIITQFQRYHQPHTLSPDQ---EDCMYWYNFL 487
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare} Length = 115 Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1367
d2a5yb3277 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor 5e-53
d1w5sa2287 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t 0.003
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  185 bits (470), Expect = 5e-53
 Identities = 42/288 (14%), Positives = 85/288 (29%), Gaps = 29/288 (10%)

Query: 172 SKKASQRPETTSLVDEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTL 231
            +   ++    ++  +   Y RE     V++ L       D     + + G  G GK+ +
Sbjct: 4   RQMLDRKLLLGNVPKQMTCYIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVI 60

Query: 232 AQLVYNDKQ--VQDHFDLKAWTCVSDDFDVKRLTKTILTSIV---------ASQNVGDPS 280
           A    +     +  ++D   W   S               ++                 S
Sbjct: 61  ASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTS 120

Query: 281 LNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVTTRNQEVA-E 339
           +   +   +  +     L V DDV       W Q            + +VTTR+ E++  
Sbjct: 121 VVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISNA 172

Query: 340 IMGTVPSYQLKKLSDNDCLAVFAQHSLGSHKLLE--EIGKKIVTKCDGLPLAAQTLGGLL 397
              T    ++  L  ++C      + +      +  ++  K +    G P          
Sbjct: 173 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSC 232

Query: 398 RGKHDRREWERVLCSKIWELSEKRCGIIPALAVSYYYLPPTLKQCFAY 445
             K     +E++        S    G+      SY  L   L++C   
Sbjct: 233 EPK----TFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEV 276
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1367
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 100.0
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 99.93
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 99.92
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 99.85
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 99.84
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 99.83
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 99.8
d1p9ag_266 von Willebrand factor binding domain of glycoprote 99.79
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 99.77
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 99.73
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 99.73
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 99.73
d1p9ag_266 von Willebrand factor binding domain of glycoprote 99.72
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 99.63
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 99.52
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.51
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.51
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.49
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.48
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 99.47
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 99.47
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.46
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 99.34
d1z7xw1460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 99.31
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 99.17
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 99.15
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 99.11
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 99.09
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 99.08
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 99.07
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 99.07
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 99.06
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 99.0
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 98.96
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 98.96
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 98.95
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 98.92
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 98.9
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 98.9
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 98.8
d2ifga3156 High affinity nerve growth factor receptor, N-term 98.73
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 98.72
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 98.71
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 98.68
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 98.68
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 98.67
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 98.63
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 98.62
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 98.59
d2ifga3156 High affinity nerve growth factor receptor, N-term 98.58
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 98.53
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 98.52
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 98.52
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 98.4
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 98.24
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 98.22
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 97.85
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 97.72
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 97.66
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 97.65
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 97.49
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 97.43
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 97.27
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 97.26
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 97.25
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 96.87
d2qy9a2211 GTPase domain of the signal recognition particle r 96.82
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 96.79
d1sq5a_308 Pantothenate kinase PanK {Escherichia coli [TaxId: 96.79
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 96.76
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 96.69
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 96.58
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 96.49
d1ls1a2207 GTPase domain of the signal sequence recognition p 96.48
d2jdid3276 Central domain of beta subunit of F1 ATP synthase 96.48
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 96.47
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 96.44
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 96.43
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 96.43
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 96.37
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 96.31
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 96.31
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 96.3
d1j8yf2211 GTPase domain of the signal sequence recognition p 96.3
d1okkd2207 GTPase domain of the signal recognition particle r 96.28
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 96.27
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 96.27
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 96.26
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 96.26
d1vmaa2213 GTPase domain of the signal recognition particle r 96.23
d2qm8a1323 Metallochaperone MeaB {Methylobacterium extorquens 96.22
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 96.18
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 96.15
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 96.15
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 96.12
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 96.04
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 96.03
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 96.01
d1xpua3289 Transcription termination factor Rho, ATPase domai 95.94
d2awna2232 Maltose transport protein MalK, N-terminal domain 95.92
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 95.9
d1ihua2279 Arsenite-translocating ATPase ArsA {Escherichia co 95.88
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 95.88
d1svma_362 Papillomavirus large T antigen helicase domain {Si 95.86
d1odfa_286 Hypothetical protein Ygr205W {Baker's yeast (Sacch 95.82
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 95.81
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 95.8
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 95.78
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 95.7
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 95.66
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 95.62
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 95.62
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 95.62
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 95.61
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 95.51
d1ihua1296 Arsenite-translocating ATPase ArsA {Escherichia co 95.5
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 95.49
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 95.48
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 95.48
d1cp2a_269 Nitrogenase iron protein {Clostridium pasteurianum 95.44
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 95.42
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 95.4
d1fx0a3276 Central domain of alpha subunit of F1 ATP synthase 95.3
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 95.22
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 95.21
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 95.02
d2vp4a1197 Deoxyribonucleoside kinase {Fruit fly (Drosophila 95.01
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 94.96
d1a7ja_288 Phosphoribulokinase {Rhodobacter sphaeroides [TaxI 94.91
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 94.9
d2afhe1289 Nitrogenase iron protein {Azotobacter vinelandii [ 94.89
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 94.88
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 94.81
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 94.79
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 94.78
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 94.77
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 94.77
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 94.74
d2ocpa1241 Deoxyguanosine kinase {Human (Homo sapiens) [TaxId 94.73
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 94.67
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 94.59
d1uf9a_191 Dephospho-CoA kinase {Thermus thermophilus [TaxId: 94.48
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 94.4
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 94.37
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 94.33
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 94.29
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 94.29
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 94.26
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 94.2
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 94.08
d1p5zb_241 Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 94.07
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 94.02
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 93.83
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 93.82
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 93.8
d1hyqa_232 Cell division regulator MinD {Archaeon Archaeoglob 93.7
d2jdia3285 Central domain of alpha subunit of F1 ATP synthase 93.69
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 93.68
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 93.67
d1g2912240 Maltose transport protein MalK, N-terminal domain 93.58
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 93.58
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 93.42
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 93.38
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 93.35
d1gsia_208 Thymidylate kinase {Mycobacterium tuberculosis [Ta 93.23
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 92.98
d1vhta_208 Dephospho-CoA kinase {Escherichia coli [TaxId: 562 92.93
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 92.88
d1g3qa_237 Cell division regulator MinD {Archaeon Pyrococcus 92.64
d1jjva_205 Dephospho-CoA kinase {Haemophilus influenzae [TaxI 92.55
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 92.5
d1p6xa_333 Thymidine kinase {Equine herpesvirus type 4 [TaxId 92.43
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 92.4
d1svia_195 Probable GTPase EngB {Bacillus subtilis [TaxId: 14 92.23
d2a5ja1173 Rab2b {Human (Homo sapiens) [TaxId: 9606]} 92.0
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 91.99
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 91.98
d1deka_241 Deoxynucleoside monophosphate kinase {Bacteriophag 91.96
d1vpla_238 Putative ABC transporter TM0544 {Thermotoga mariti 91.96
d1z0fa1166 Rab14 {Human (Homo sapiens) [TaxId: 9606]} 91.83
d1z2aa1164 Rab23 {Mouse (Mus musculus) [TaxId: 10090]} 91.81
d2f7sa1186 Rab27b {Human (Homo sapiens) [TaxId: 9606]} 91.74
d1mh1a_183 Rac {Human (Homo sapiens) [TaxId: 9606]} 91.68
d1upta_169 ADP-ribosylation factor {Human (Homo sapiens), ARL 91.66
d2erxa1171 di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 91.63
d1g6ha_254 MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 91.63
d2hyda1255 Putative multidrug export ATP-binding/permease pro 91.63
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 91.54
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 91.54
d1z06a1165 Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} 91.5
d1r8sa_160 ADP-ribosylation factor {Human (Homo sapiens), ARF 91.46
d2atva1168 Ras-like estrogen-regulated growth inhibitor, RERG 91.42
d1kaoa_167 Rap2a {Human (Homo sapiens) [TaxId: 9606]} 91.3
d1ky3a_175 Rab-related protein ypt7p {Baker's yeast (Saccharo 91.27
d1r2qa_170 Rab5a {Human (Homo sapiens) [TaxId: 9606]} 91.25
d1z0ja1167 Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} 91.19
d1z08a1167 Rab21 {Human (Homo sapiens) [TaxId: 9606]} 91.17
d2fh5b1207 Signal recognition particle receptor beta-subunit 91.03
d2bcgy1194 GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi 91.01
d2gjsa1168 Rad {Human (Homo sapiens) [TaxId: 9606]} 90.99
d3raba_169 Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} 90.97
d1zj6a1177 ADP-ribosylation factor {Human (Homo sapiens), ARL 90.91
d1wf3a1178 GTPase Era, N-terminal domain {Thermus thermophilu 90.89
d1yzqa1164 Rab6 {Human (Homo sapiens) [TaxId: 9606]} 90.87
d2ew1a1171 Rab30 {Human (Homo sapiens) [TaxId: 9606]} 90.86
d1c1ya_167 Rap1A {Human (Homo sapiens) [TaxId: 9606]} 90.72
d1e2ka_329 Thymidine kinase {Herpes simplex virus type 1, dif 90.71
d1ksha_165 ADP-ribosylation factor {Mouse (Mus musculus), ARL 90.64
d2g6ba1170 Rab26 {Human (Homo sapiens) [TaxId: 9606]} 90.6
d1nija1222 Hypothetical protein YjiA, N-terminal domain {Esch 90.58
d2erya1171 r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 90.56
d1xtqa1167 GTP-binding protein RheB {Human (Homo sapiens) [Ta 90.46
d2fn4a1173 r-Ras {Human (Homo sapiens) [TaxId: 9606]} 90.46
d2f9la1175 Rab11b {Human (Homo sapiens) [TaxId: 9606]} 90.46
d1nrjb_209 Signal recognition particle receptor beta-subunit 90.37
d2bmea1174 Rab4a {Human (Homo sapiens) [TaxId: 9606]} 90.29
d1svsa1195 Transducin (alpha subunit) {Rat (Rattus norvegicus 90.25
d1ek0a_170 Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T 90.24
d1g16a_166 Rab-related protein Sec4 {Baker's yeast (Saccharom 90.24
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 90.17
d2atxa1185 RhoQ {Human (Homo sapiens) [TaxId: 9606]} 90.16
d1u8za_168 Ras-related protein RalA {Cotton-top tamarin (Sagu 90.12
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 90.03
d1ctqa_166 cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 90.01
d1kmqa_177 RhoA {Human (Homo sapiens) [TaxId: 9606]} 89.93
d1zcba2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 89.85
d1x1ra1169 Ras-related protein M-Ras (XRas) {Mouse (Mus muscu 89.83
d1m7ba_179 RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} 89.74
d1fzqa_176 ADP-ribosylation factor {Mouse (Mus musculus), ARL 89.71
d2ngra_191 CDC42 {Human (Homo sapiens) [TaxId: 9606]} 89.65
d2g3ya1172 GTP-binding protein GEM {Human (Homo sapiens) [Tax 89.64
d1f6ba_186 SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 89.6
d1wmsa_174 Rab9a {Human (Homo sapiens) [TaxId: 9606]} 89.52
d1egaa1179 GTPase Era, N-terminal domain {Escherichia coli [T 89.41
d1x3sa1177 Rab18 {Human (Homo sapiens) [TaxId: 9606]} 89.38
d1vg8a_184 Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} 89.38
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 88.99
d2bv3a2276 Elongation factor G (EF-G), N-terminal (G) domain 88.95
d1zd9a1164 ADP-ribosylation factor {Human (Homo sapiens), ARL 88.81
d2bmja1175 Centaurin gamma 1, G domain {Human (Homo sapiens) 88.74
d1azta2221 Transducin (alpha subunit) {Cow (Bos taurus) [TaxI 88.64
d1osna_331 Thymidine kinase {Varicella-zoster virus [TaxId: 1 88.46
d1kkma_176 HPr kinase HprK C-terminal domain {Lactobacillus c 88.4
d2qtvb1166 SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 88.08
d2bcjq2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 87.97
d1udxa2180 Obg GTP-binding protein middle domain {Thermus the 87.91
d2cxxa1184 GTP-binding protein engB {Pyrococcus horikoshii [T 87.78
d1knxa2177 HPr kinase HprK C-terminal domain {Mycoplasma pneu 87.46
d2dy1a2267 Elongation factor G (EF-G), N-terminal (G) domain 87.43
d1e0sa_173 ADP-ribosylation factor {Human (Homo sapiens), ARF 87.21
d1i2ma_170 Ran {Human (Homo sapiens) [TaxId: 9606]} 87.21
d1byia_224 Dethiobiotin synthetase {Escherichia coli [TaxId: 87.18
d1tuea_205 Replication protein E1 helicase domain {Human papi 86.8
d1moza_182 ADP-ribosylation factor {Baker's yeast (Saccharomy 86.79
d1lnza2185 Obg GTP-binding protein middle domain {Bacillus su 86.73
d1h65a_257 Chloroplast protein translocon GTPase Toc34 {Garde 86.64
d1mkya2186 Probable GTPase Der, N-terminal and middle domains 86.59
d2fu5c1173 Rab8a {Mouse (Mus musculus) [TaxId: 10090]} 85.97
d2gj8a1161 Probable tRNA modification GTPase TrmE (MnmE), G d 85.69
d1ko7a2169 HPr kinase HprK C-terminal domain {Staphylococcus 85.65
d1u0ja_267 Rep 40 protein helicase domain {Adeno-associated v 85.55
d1puia_188 Probable GTPase EngB {Escherichia coli [TaxId: 562 85.19
g1f2t.1292 Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} 84.79
d1n0ua2341 Elongation factor 2 (eEF-2), N-terminal (G) domain 84.35
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 82.88
d1wb9a2234 DNA repair protein MutS, the C-terminal domain {Es 82.53
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 81.64
d1g7sa4227 Initiation factor IF2/eIF5b, N-terminal (G) domain 80.95
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 80.83
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=0  Score=303.11  Aligned_cols=249  Identities=15%  Similarity=0.132  Sum_probs=195.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCC--CCCCCCCEEEEEEECCCCCHH
Q ss_conf             766568313440059999999822998999993699886779882899999997372--432466629999918966999
Q 000660          183 SLVDEAKVYGRETEKKDVVELLLRDDLSNDGGFSVIPIIGMGGLGKTTLAQLVYNDK--QVQDHFDLKAWTCVSDDFDVK  260 (1367)
Q Consensus       183 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~i~G~gG~GKTtLa~~v~~~~--~~~~~f~~~~wv~~s~~~~~~  260 (1367)
                      ..+.++.++||+.++++|+++|...   .+...++|+|+||||+||||||+++|++.  ..+.+|++++||++++.++..
T Consensus        15 ~~p~~~~~~gR~~~~~~i~~~L~~~---~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~   91 (277)
T d2a5yb3          15 NVPKQMTCYIREYHVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKS   91 (277)
T ss_dssp             TCBCCCCSCCCHHHHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTH
T ss_pred             CCCCCCCEECCHHHHHHHHHHHHHC---CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHH
T ss_conf             8999886237399999999998734---6878408999779978889999999985565540127648999936877777


Q ss_pred             HHHHHHHHHHHH---CCCC------CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCCEEEEE
Q ss_conf             999999999430---3899------9999689999999991798559999837878901154411555779999389997
Q 000660          261 RLTKTILTSIVA---SQNV------GDPSLNSLQKELSKQLSGKKFLLVLDDVWNRNYDDWVQLRRPFEVGAPGSKIIVT  331 (1367)
Q Consensus       261 ~~~~~il~~l~~---~~~~------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT  331 (1367)
                      .+...+...+..   ....      ...........+...+.++|+|+|+||||+.  ..|..+.      ..|++||||
T Consensus        92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~--~~~~~~~------~~~srilvT  163 (277)
T d2a5yb3          92 TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE--ETIRWAQ------ELRLRCLVT  163 (277)
T ss_dssp             HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH--HHHHHHH------HTTCEEEEE
T ss_pred             HHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHH--HHHHHHC------CCCCEEEEE
T ss_conf             89999999998722022027863212336999999999984468816752506677--6655520------457559999


Q ss_pred             CCCHHHHHHHCCC-CCEECCCCCHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             2752588651797-80517899967799999862129--93048999999998339976999999855207999999999
Q 000660          332 TRNQEVAEIMGTV-PSYQLKKLSDNDCLAVFAQHSLG--SHKLLEEIGKKIVTKCDGLPLAAQTLGGLLRGKHDRREWER  408 (1367)
Q Consensus       332 tR~~~v~~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~  408 (1367)
                      ||+..++..+... ..|++++|+.+|||+||.+++|.  ..+..++++.+|+++|+|+||||+++|+.++.+ ..+.|..
T Consensus       164 TR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k-~~~~~~~  242 (277)
T d2a5yb3         164 TRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TFEKMAQ  242 (277)
T ss_dssp             ESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SHHHHHH
T ss_pred             EEHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CHHHHHH
T ss_conf             644899986378871687788997999999999847766742567999999999589989999999986559-8999999


Q ss_pred             HHHCHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             98200100013545704799984507984677785251
Q 000660          409 VLCSKIWELSEKRCGIIPALAVSYYYLPPTLKQCFAYC  446 (1367)
Q Consensus       409 ~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~~  446 (1367)
                      ..+....   ....++..++.+||++||+++|.||.++
T Consensus       243 ~~~~L~~---~~~~~v~~il~~sY~~L~~~lk~c~~~l  277 (277)
T d2a5yb3         243 LNNKLES---RGLVGVECITPYSYKSLAMALQRCVEVL  277 (277)
T ss_dssp             HHHHHHH---HCSSTTCCCSSSSSSSHHHHHHHHHHTS
T ss_pred             HHHHHHC---CCHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             9999734---8678899999998851269999999739
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Back     information, alignment and structure
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Back     information, alignment and structure
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Back     information, alignment and structure
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} Back     information, alignment and structure
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Back     information, alignment and structure
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Back     information, alignment and structure
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Back     information, alignment and structure
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} Back     information, alignment and structure
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} Back     information, alignment and structure
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Back     information, alignment and structure
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Back     information, alignment and structure
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} Back     information, alignment and structure
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Back     information, alignment and structure
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} Back     information, alignment and structure
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} Back     information, alignment and structure
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure