Citrus Sinensis ID: 000671
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1361 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LGU1 | 1464 | ABC transporter C family | yes | no | 0.965 | 0.897 | 0.645 | 0.0 | |
| Q9LYS2 | 1453 | ABC transporter C family | no | no | 0.927 | 0.868 | 0.425 | 0.0 | |
| Q7GB25 | 1514 | ABC transporter C family | no | no | 0.919 | 0.826 | 0.409 | 0.0 | |
| Q9M1C7 | 1506 | ABC transporter C family | no | no | 0.952 | 0.861 | 0.390 | 0.0 | |
| Q9LK64 | 1514 | ABC transporter C family | no | no | 0.833 | 0.749 | 0.423 | 0.0 | |
| Q8VZZ4 | 1466 | ABC transporter C family | no | no | 0.923 | 0.857 | 0.392 | 0.0 | |
| Q9LK62 | 1493 | ABC transporter C family | no | no | 0.834 | 0.760 | 0.401 | 0.0 | |
| Q9LZJ5 | 1539 | ABC transporter C family | no | no | 0.911 | 0.805 | 0.373 | 0.0 | |
| Q7DM58 | 1516 | ABC transporter C family | no | no | 0.906 | 0.813 | 0.380 | 0.0 | |
| Q7FB56 | 1053 | Putative ABC transporter | no | no | 0.662 | 0.856 | 0.432 | 0.0 |
| >sp|Q8LGU1|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 1659 bits (4296), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 858/1330 (64%), Positives = 1038/1330 (78%), Gaps = 16/1330 (1%)
Query: 4 LGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRRE 63
+ +G L W C+ E +L S C Q T I +NL+F C+FYL L+ S H R R++
Sbjct: 1 MAAFIGSLPW-CDVELNLASSCFQRTAIAFVNLLFLCIFYL-FLIASCVSTHFIVRGRKK 58
Query: 64 C-VSIVVSACCAVVGIAYLGYCLWNLI-AKND-SSMSWLVSTVRGLIWVSLAISLLVKRS 120
+ + V+ CCA+ +LG L +LI ND + +SW+ V G+IWVSLA+SLLV S
Sbjct: 59 GWIFVAVAICCAITSFIFLGVGLNSLIHGGNDVTEISWVACFVEGIIWVSLAVSLLVNGS 118
Query: 121 KWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSP 180
KW+ +L+++WW+SF+LL L IL + I ++ IL LP++LLLL ++ N +S
Sbjct: 119 KWVNILVSVWWVSFALLDLVAKSGILLQGNGIRILDILTLPMSLLLLLCSWMNLRS-SSA 177
Query: 181 NREDKS---LSEPLLAE---KNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSL 234
+D S LS+PLL + K L AG L+FSW+NPLLSLG+ KPL+ EDIPS+
Sbjct: 178 AAQDCSVTGLSDPLLTKNPRKESARLATAGFFSILSFSWMNPLLSLGFKKPLSPEDIPSV 237
Query: 235 VPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVV 294
VPEDEA AY+KF+ AWD+L+ + +S NLV + + VY KENIFIA+ A LRT AVV
Sbjct: 238 VPEDEAQLAYKKFSQAWDTLLGDESSTKERNLVFRAVVKVYFKENIFIAVFAFLRTFAVV 297
Query: 295 VGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354
PL+LY FV+Y+N +L+ G + CL++ K+VES T RH +F SRRSGMR+RSALM
Sbjct: 298 SLPLMLYVFVDYANSDHRDLRNGFFNLACLVMLKLVESLTMRHWYFASRRSGMRIRSALM 357
Query: 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFG 414
VA Y+KQLKLSSLGRK+HS+GEIVNYIAVDAYRMGEF +WFH WSL+LQL L+ VLFG
Sbjct: 358 VAAYKKQLKLSSLGRKRHSSGEIVNYIAVDAYRMGEFLWWFHSGWSLSLQLLLSTAVLFG 417
Query: 415 VVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSW 474
VVG GA PGL+L L+CGLLN+PFAK+LQ CQ++FMIAQD+RLRSTSEILN+MK+IKLQSW
Sbjct: 418 VVGAGAFPGLILLLLCGLLNLPFAKMLQNCQTQFMIAQDKRLRSTSEILNSMKVIKLQSW 477
Query: 475 EEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNAST 534
E++FK IES R+ EF WL++AQL KA+G+ +YWMSPTI+SSV+FLGCAL SAPLNAST
Sbjct: 478 EDEFKKKIESCRDDEFTWLAKAQLTKAFGSFLYWMSPTIVSSVVFLGCALLKSAPLNAST 537
Query: 535 IFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594
IFTVLATLR M EPV++IP+A+S +IQ VSF R+N FLLD EL D++ R L S +
Sbjct: 538 IFTVLATLRVMSEPVKIIPDAISAIIQGNVSFQRLNNFLLDDELKMDEIERSGLDASGTA 597
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
V IQ GNF W+PE IPTLR ++L+IK QK+AVCG VGAGKSSLL+A+LGEIPK+SGTV
Sbjct: 598 VDIQVGNFGWEPETKIPTLRNIHLEIKHGQKVAVCGPVGAGKSSLLHAVLGEIPKVSGTV 657
Query: 655 NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714
++GSIAYVSQTSWIQSG+IRDNILYGKPM+ RY+ AIKACALDKD+N F HGDLTEIG
Sbjct: 658 KVFGSIAYVSQTSWIQSGTIRDNILYGKPMESRRYNAAIKACALDKDMNGFGHGDLTEIG 717
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL 774
QRG+NLSGGQKQRIQLARAVY DAD+YL DDPFSAVDAHTA LF++CV +L++KTVIL
Sbjct: 718 QRGINLSGGQKQRIQLARAVYADADVYLLDDPFSAVDAHTAGVLFHKCVEDSLKEKTVIL 777
Query: 775 VTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQ 834
VTHQVEFLSEVD+ILV+E G ITQSG Y+ELL+ GTAF+QLVNAH DA+T L N
Sbjct: 778 VTHQVEFLSEVDQILVMEEGTITQSGKYEELLMMGTAFQQLVNAHNDAVTVLPLASNESL 837
Query: 835 GGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLN 894
G K K R R N K E E + QLT++EE E G VG KPF+DY+
Sbjct: 838 GDLRKEGKDREIR----NMTVVEKIEEEIEKTDIPGVQLTQEEEKESGYVGMKPFLDYIG 893
Query: 895 VSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYF 954
VS+G LL VL Q GFV QAA+TYWLA+AI IPKIT+ +LIGVY+ +ST SA FVY
Sbjct: 894 VSRGWCLLWSSVLGQVGFVVFQAASTYWLAFAIGIPKITNTMLIGVYSIISTLSAGFVYA 953
Query: 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIV 1014
R+ AHLGLKASKAFFSGFTN++FKAPMLFFDSTPVGRILTR SSDL++LD+D+PF+ +
Sbjct: 954 RAITTAHLGLKASKAFFSGFTNAVFKAPMLFFDSTPVGRILTRASSDLNVLDYDVPFAFI 1013
Query: 1015 FVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVM 1074
FV A EL A + IMT+VTWQV+++A+ A+ A + VQ YY+A+ARELIRINGTTKAPVM
Sbjct: 1014 FVVAPAVELTAALLIMTYVTWQVIIIALLALAATKVVQDYYLASARELIRINGTTKAPVM 1073
Query: 1075 NYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLF 1134
NY AETS GVVTIRAF +RFF+NYL LVD DA LFF +N MEW+ILR+E LQN+TLF
Sbjct: 1074 NYAAETSLGVVTIRAFGTAERFFKNYLNLVDADAVLFFLSNAAMEWVILRIETLQNVTLF 1133
Query: 1135 TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIP 1194
T AL L+LIP+GY+APGLVGLSLSYA TLT TQVFL+RWYC L+N IISVERIKQ+M+IP
Sbjct: 1134 TCALLLILIPKGYIAPGLVGLSLSYALTLTQTQVFLTRWYCTLSNSIISVERIKQYMNIP 1193
Query: 1195 PEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGS 1254
EPPAI++DKRPPSSWP G I L++LKIRYRPNAPLVLKGI+CTF EGTRVGVVGRTGS
Sbjct: 1194 EEPPAIIDDKRPPSSWPSNGTIHLQELKIRYRPNAPLVLKGISCTFREGTRVGVVGRTGS 1253
Query: 1255 GKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL 1314
GK+TLISALFRLVEPA G ILIDG+DI +GLKDLR+KLSIIPQEPTLFRG +RTNLDPL
Sbjct: 1254 GKSTLISALFRLVEPASGCILIDGIDISKIGLKDLRMKLSIIPQEPTLFRGCIRTNLDPL 1313
Query: 1315 GLYSDDEIWK 1324
G+YSDDEIWK
Sbjct: 1314 GVYSDDEIWK 1323
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q9LYS2|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1028 bits (2658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/1304 (42%), Positives = 804/1304 (61%), Gaps = 42/1304 (3%)
Query: 43 YLSLLVGSFRKNHNYGRIRRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSS--MSWLV 100
+L+L + F K + C+ +V + ++G L +W ++ +N S + WLV
Sbjct: 34 FLTLCICLFHKEPPKRIHQFFCLRLVSALFNGIIGSLDLVLGIW-VLRENHSKPLILWLV 92
Query: 101 STVRGLIWVSLAISLLVK----RSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVY 156
++G W+ + + + V+ R +R+L +++ + L+ L++ + V
Sbjct: 93 ILIQGFTWLFINLIICVRGTRIRKSSLRLL-SIFSFFYGLVSSCLSVNNAVFGDELAVRT 151
Query: 157 ILPLPVNLLLLFSAFRNFSHFTSPNREDKSLSEPLLA------------EKNQTELGKAG 204
IL + + + + + + SL EPL A + ++ KAG
Sbjct: 152 ILDVLLLPGSVLLLLSAYKGYRFDESGESSLYEPLNAGDSNGFSEKADFDNRVSQFAKAG 211
Query: 205 LLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNG 264
L L+F W+N L+ G K L EDIP L E+ A Y F R S+
Sbjct: 212 LFSTLSFWWLNSLIKRGNVKDLEEEDIPELRKEERAETCYSLFEENLIEQKRRLGSSCQP 271
Query: 265 NLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCL 324
++++ + V+ +E + A ++ +AV GPLLL AF+ + EGL + L
Sbjct: 272 SILKVTVLCVW-RELLTSGFFAFMKIVAVSAGPLLLNAFILVAEGNASFRYEGLVLAVLL 330
Query: 325 IITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVD 384
+K++ES +QR +F R G+R+RS L A+ +KQL+L++ R HS EI+NY VD
Sbjct: 331 FFSKMIESLSQRQWYFRCRIVGLRVRSLLTAAINKKQLRLNNSSRLIHSGSEIMNYATVD 390
Query: 385 AYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKC 444
AYR+GEFP+WFH W+ + QL +A+G+LF VG+ L + ++ L N P AK+ K
Sbjct: 391 AYRIGEFPYWFHQLWTTSFQLLIALGILFHSVGVATFSALAVIILTVLCNAPIAKLQNKF 450
Query: 445 QSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT 504
QSE M +QDERL++ +E L NMK++KL +WE FK +IE R E K L Q+RKAY
Sbjct: 451 QSELMTSQDERLKACNESLVNMKVLKLYAWESHFKKVIEKLRNIELKSLKAVQMRKAYNA 510
Query: 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKV 564
V++W SP +S+ F C PL AS +FT +ATLR + +PVRMIP+ + + IQ KV
Sbjct: 511 VLFWSSPVFVSAATFATCYFL-DIPLRASNVFTFVATLRLVQDPVRMIPDVIGVTIQAKV 569
Query: 565 SFDRINAFLLDHELNNDDVRRISLQKSDR-SVKIQEGNFSWDPELAI-PTLRGVNLDIKW 622
+F RI FL EL + RR + ++ ++ I+ +FSW+ + + P LR V+L++K+
Sbjct: 570 AFSRIATFLEAPELQGGERRRKQRSEGNQNAIIIKSASFSWEEKGSTKPNLRNVSLEVKF 629
Query: 623 AQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGK 682
+K+AVCG VG+GKS+LL AILGE P +SGT++ YG+IAYVSQT+WIQ+G+IRDNIL+G
Sbjct: 630 GEKVAVCGEVGSGKSTLLAAILGETPCVSGTIDFYGTIAYVSQTAWIQTGTIRDNILFGG 689
Query: 683 PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742
MD+ RY + I+ +LDKD+ GD TEIG+RG+NLSGGQKQRIQLARA+Y DADIYL
Sbjct: 690 VMDEHRYRETIQKSSLDKDLELLPDGDQTEIGERGVNLSGGQKQRIQLARALYQDADIYL 749
Query: 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802
DDPFSAVDAHTA++LF E VM AL K V+LVTHQV+FL D +L++ G+IT++ Y
Sbjct: 750 LDDPFSAVDAHTASSLFQEYVMDALAGKAVLLVTHQVDFLPAFDSVLLMSDGEITEADTY 809
Query: 803 QELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSE 862
QELL F+ LVNAHR+ G+E+V P +P R SS+
Sbjct: 810 QELLARSRDFQDLVNAHRET------------AGSERVVA--VENPTKPVKEINRVISSQ 855
Query: 863 GEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYW 922
+ V ++L + EE E GD G +P++ Y+N +KG + LAQ F Q W
Sbjct: 856 SK--VLKPSRLIKQEEREKGDTGLRPYIQYMNQNKGYIFFFIASLAQVTFAVGQILQNSW 913
Query: 923 LAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAP 982
+A + P++++ LI VY + S + + RS + +K+S + FS NS+F+AP
Sbjct: 914 MAANVDNPQVSTLKLILVYLLIGLCSVLCLMVRSVCVVIMCMKSSASLFSQLLNSLFRAP 973
Query: 983 MLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAI 1042
M F+DSTP+GRIL+R+SSDLSI+D D+PF ++FV AS +G++ VTWQVL V++
Sbjct: 974 MSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFVVASSVNTGCSLGVLAIVTWQVLFVSV 1033
Query: 1043 FAMVAVRF-VQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101
MV + F +Q+YY TA+EL+RINGTT++ V N+ AE+ G +TIRAF+ +RFF+ L
Sbjct: 1034 -PMVYLAFRLQKYYFQTAKELMRINGTTRSYVANHLAESVAGAITIRAFDEEERFFKKSL 1092
Query: 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAF 1161
L+D +AS FFH+ EWLI R+E + + L + A ++L+P G + G +G++LSY
Sbjct: 1093 TLIDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFCMILLPTGTFSSGFIGMALSYGL 1152
Query: 1162 TLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQL 1221
+L V+ + CYLAN+IISVER+ Q+ H+ PE P ++E+ RPP +WP GR+E+ L
Sbjct: 1153 SLNMGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPEVIEETRPPVNWPVTGRVEISDL 1212
Query: 1222 KIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDI 1281
+IRYR +PLVLKGI+CTF G ++G+VGRTGSGKTTLISALFRLVEP GG I++DGVDI
Sbjct: 1213 QIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPVGGKIVVDGVDI 1272
Query: 1282 CSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKV 1325
+G+ DLR + IIPQ+PTLF G+VR NLDPL +SD EIW+V
Sbjct: 1273 SKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSDAEIWEV 1316
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7GB25|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 991 bits (2561), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/1310 (40%), Positives = 774/1310 (59%), Gaps = 58/1310 (4%)
Query: 95 SMSWLVSTVRGLIWVSLAISLLVKRSKWIRMLITLWW-MSFSLLVLA-------LNIEIL 146
S++W V + L + L K S+ + L+ +WW ++FS+ + L IE
Sbjct: 120 SLAWFVLSF-------LVLHLKYKSSEKLPFLVRIWWFLAFSICLCTMYVDGRRLAIEGW 172
Query: 147 ARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPNREDKSLSEPLLAEKNQ-----TELG 201
+R + V + P L F A+R S R L EPLL E+ T
Sbjct: 173 SRCSSHVVANLAVTPALGFLCFLAWRGVSGIQV-TRSSSDLQEPLLVEEEAACLKVTPYS 231
Query: 202 KAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSN 261
AGL+ +T SW++PLLS G +PL L+DIP L P D A +Y+ W EN S
Sbjct: 232 TAGLVSLITLSWLDPLLSAGSKRPLELKDIPLLAPRDRAKSSYKVLKSNWKRCKSENPSK 291
Query: 262 NNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIV 321
+ + I + KE A+ A L T+ VGP L+ FV+Y E EG +
Sbjct: 292 PPS--LARAIMKSFWKEAACNAVFAGLNTLVSYVGPYLISYFVDYLGGKEIFPHEGYVLA 349
Query: 322 GCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYI 381
G +K++E+ T R + G GM +RSAL VY+K LKLSS+ ++ H++GEIVNY+
Sbjct: 350 GIFFTSKLIETVTTRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYM 409
Query: 382 AVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKIL 441
AVD R+G++ ++ H W L +Q+ LA+ +L+ VG+ A+ LV +I L+ +P AK+
Sbjct: 410 AVDVQRIGDYSWYLHDIWMLPMQIVLALAILYKSVGIAAVATLVATIISILVTIPLAKVQ 469
Query: 442 QKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA 501
+ Q + M A+DER+R TSE L NM+++KLQ+WE++++ +E RE+E+ WL +A +A
Sbjct: 470 EDYQDKLMTAKDERMRKTSECLRNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKALYSQA 529
Query: 502 YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQ 561
+ T I+W SP +++V F G+ L A + + LAT R + EP+R P+ +S+M Q
Sbjct: 530 FVTFIFWSSPIFVAAVTFATSIFLGTQ-LTAGGVLSALATFRILQEPLRNFPDLVSMMAQ 588
Query: 562 VKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIK 621
KVS DRI+ FL + EL D I S+ +++I++G F WDP + PTL G+ + ++
Sbjct: 589 TKVSLDRISGFLQEEELQEDATVVIPRGLSNIAIEIKDGVFCWDPFSSRPTLSGIQMKVE 648
Query: 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYG 681
++AVCG+VG+GKSS + ILGEIPKISG V + G+ YVSQ++WIQSG+I +NIL+G
Sbjct: 649 KGMRVAVCGTVGSGKSSFISCILGEIPKISGEVRICGTTGYVSQSAWIQSGNIEENILFG 708
Query: 682 KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741
PM+K +Y I+AC+L KDI F HGD T IG+RG+NLSGGQKQR+QLARA+Y DADIY
Sbjct: 709 SPMEKTKYKNVIQACSLKKDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDADIY 768
Query: 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801
L DDPFSA+DAHT + LF + +++AL +KTV+ VTHQVEFL D ILVL+ G+I QSG
Sbjct: 769 LLDDPFSALDAHTGSDLFRDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQSGK 828
Query: 802 YQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPR---- 857
Y +LL AGT F+ LV+AH +AI + + + E + + ++
Sbjct: 829 YDDLLQAGTDFKALVSAHHEAIEAMDIPSPSSEDSDENPIRDSLVLHNPKSDVFENDIET 888
Query: 858 --KESSEG--------------EISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSL 901
KE EG + QL ++EE G V K ++ Y+ + +L
Sbjct: 889 LAKEVQEGGSASDLKAIKEKKKKAKRSRKKQLVQEEERVKGKVSMKVYLSYMGAAYKGAL 948
Query: 902 LCLGVLAQSGFVGLQAAATYWLAYAI-----QIPKITSGILIGVYAGVSTASAVFVYFRS 956
+ L +LAQ+ F LQ A+ +W+A+A K+ +L+ VY ++ S+VF++ R+
Sbjct: 949 IPLIILAQAAFQFLQIASNWWMAWANPQTEGDESKVDPTLLLIVYTALAFGSSVFIFVRA 1008
Query: 957 FFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFV 1016
A GL A++ F S+F+APM FFDSTP GRIL R+S D S++D DIPF +
Sbjct: 1009 ALVATFGLAAAQKLFLNMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGF 1068
Query: 1017 AASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNY 1076
A++ +L I+ +MT VTWQV ++ + VA ++Q+YY+A++REL+RI K+P+++
Sbjct: 1069 ASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRIVSIQKSPIIHL 1128
Query: 1077 TAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA 1136
E+ G TIR F RF + L L+D FF + +EWL LR+E L L
Sbjct: 1129 FGESIAGAATIRGFGQEKRFIKRNLYLLDCFVRPFFCSIAAIEWLCLRMELLSTLVFAFC 1188
Query: 1137 ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRW---YCYLANYIISVERIKQFMHI 1193
+ LV P G + P + GL+++Y L G LSRW +C L N IIS+ERI Q+ I
Sbjct: 1189 MVLLVSFPHGTIDPSMAGLAVTYGLNLNGR---LSRWILSFCKLENKIISIERIYQYSQI 1245
Query: 1194 PPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTG 1253
E PAI+ED RPPSSWP G IEL +K+RY N P VL G++C F G ++G+VGRTG
Sbjct: 1246 VGEAPAIIEDFRPPSSWPATGTIELVDVKVRYAENLPTVLHGVSCVFPGGKKIGIVGRTG 1305
Query: 1254 SGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDP 1313
SGK+TLI ALFRL+EP G I ID +DI +GL DLR +L IIPQ+PTLF G++R NLDP
Sbjct: 1306 SGKSTLIQALFRLIEPTAGKITIDNIDISQIGLHDLRSRLGIIPQDPTLFEGTIRANLDP 1365
Query: 1314 LGLYSDDEIWKV---SQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVTV 1360
L +SDD+IW+ SQL R + +D P + +QLV++
Sbjct: 1366 LEEHSDDKIWEALDKSQLGDVVRGKDLKLDSPVLENGDNWSVGQRQLVSL 1415
|
Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 918 bits (2373), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/1345 (39%), Positives = 794/1345 (59%), Gaps = 48/1345 (3%)
Query: 22 GSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGR------IRRECVSIV------V 69
S C++ I + + F F + L + F N G ++++ +++ +
Sbjct: 25 NSLCLKERISIAMQVTFLAFFLIHLALKWFGVVRNRGSNDVEEDLKKQSITVKQSFSYNI 84
Query: 70 SACCAVVGIAYLGYCLW-----NLIAKNDSSMSWLVSTV-RGLIWVSLAISLL-VKRSKW 122
S C+V + + L +++++ DSS+S + V + W+ +++ ++ ++ +
Sbjct: 85 SLLCSVSILGTHCFILLLLFRDSVVSRCDSSVSVFSAEVSQSFSWLFVSVVVVKIRERRL 144
Query: 123 IRM--LITLWWMSFSLLVLALNIEILARTYT----INVVYILPLPVNLLLLFSAFRNFSH 176
++ ++ WW+ +L + + + + + + L +L LL + R +
Sbjct: 145 VKFPWMLRSWWLCSFILSFSFDAHFITAKHEPLEFQDYADLTGLLASLFLLAVSIRGKTG 204
Query: 177 FTSPNREDKSLSEPLL----AEKNQTE-------LGKAGLLRKLTFSWINPLLSLGYSKP 225
F E +EPLL E+N+ + G A L +++TFSWINPL SLGY +P
Sbjct: 205 FHL--LESSGNTEPLLLGDQTEQNKKDSYSSSSPYGNATLFQRITFSWINPLFSLGYKRP 262
Query: 226 LALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAIC 285
L +D+P + +D A F F + +E N V+ V+ K I A+
Sbjct: 263 LEKDDVPDIDVKDSARFCSHAFDQKLKT-TKEKEGPGNAFFYNSVLRYVWRKAAIN-AVF 320
Query: 286 ALLRTIAVVVGPLLLYAFVNY-SNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRR 344
A++ +GP L+ FV + S + ++L G + + K+VE+ TQR FG+R+
Sbjct: 321 AVVNASTAYIGPYLINDFVEFLSEKQSQSLNHGYLLALGFLTAKIVETVTQRQWIFGARQ 380
Query: 345 SGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQ 404
G+R+R+AL+ +YQK L LSS R+ H++GEI+NY++VD R+ +F ++ + W L +Q
Sbjct: 381 LGLRLRAALISHIYQKGLVLSSQSRQSHTSGEIINYMSVDVQRITDFIWYVNNIWMLPIQ 440
Query: 405 LFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILN 464
+F AI +L +GLGAL LV L+ N P ++ + QS+ M A+D+R+++TSEIL
Sbjct: 441 IFSAIYILQKHLGLGALAALVTTLMVMACNYPLTRLQRNYQSDIMNAKDDRMKATSEILK 500
Query: 465 NMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCAL 524
NMKI+KLQ+W+ +F + +++ R+KE+ L ++ +A+ T I W +P++IS V F+ C L
Sbjct: 501 NMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQAFTTFILWGAPSLISVVTFVTCML 560
Query: 525 TGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584
G L A + + LAT + + P+ +P+ LS ++Q KVS DRI ++L E D V
Sbjct: 561 MG-VKLTAGAVLSALATFQMLQSPIFGLPDLLSALVQSKVSADRIASYLQQSETQKDAVE 619
Query: 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL 644
S ++ SV+I+ G FSW+PE + PTL + L +K K+AVCG+VG+GKSSLL +IL
Sbjct: 620 YCSKDHTELSVEIENGAFSWEPESSRPTLDDIELKVKSGMKVAVCGAVGSGKSSLLSSIL 679
Query: 645 GEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINN 704
GEI K+ GTV + G AYV Q+ WI SG+IRDNIL+G + +Y++ +KACAL KD
Sbjct: 680 GEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNILFGSMYESEKYERTVKACALIKDFEL 739
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
F +GDLTEIG+RG+N+SGGQKQRIQ+ARAVY +ADIYL DDPFSAVDAHT LF +C+M
Sbjct: 740 FSNGDLTEIGERGINMSGGQKQRIQIARAVYQNADIYLLDDPFSAVDAHTGRELFEDCLM 799
Query: 765 AALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAIT 824
L+ KTV+ VTHQVEFL D ILV++ G++ Q+G ++ELL FE LV AH +A+
Sbjct: 800 GILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQAGKFEELLKQNIGFEVLVGAHNEALD 859
Query: 825 GLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDV 884
+ ++ + + E K TA E + E + + K +L +DEE E G +
Sbjct: 860 SILSIEKSSRNFKEG-SKDDTASIAESLQTHCDSEHNISTENKKKEAKLVQDEETEKGVI 918
Query: 885 GWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAY-----AIQIPKITSGILIG 939
G + ++ YL KG L+ +LAQS F LQ A+ YW+A+ A IPK+ G ++
Sbjct: 919 GKEVYLAYLTTVKGGLLVPFIILAQSCFQMLQIASNYWMAWTAPPTAESIPKLGMGRILL 978
Query: 940 VYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLS 999
VYA ++ S++ V R+ A GL ++ FFS SIF+APM FFDSTP GRIL R S
Sbjct: 979 VYALLAAGSSLCVLARTILVAIGGLSTAETFFSRMLCSIFRAPMSFFDSTPTGRILNRAS 1038
Query: 1000 SDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATA 1059
+D S+LD ++ + + A S +++ I +M+ V WQV V+ I VA F QRYY TA
Sbjct: 1039 TDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAWQVCVIFIPVAVACVFYQRYYTPTA 1098
Query: 1060 RELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119
REL R++G +AP++++ AE+ G TIRAF+ DRF + L L+D + +FH ME
Sbjct: 1099 RELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWFHVASAME 1158
Query: 1120 WLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLAN 1179
WL R+ L + + + LV +P G + P + GL ++Y +L Q + C N
Sbjct: 1159 WLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVTYGLSLNVLQATVIWNICNAEN 1218
Query: 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCT 1239
+ISVERI Q+ IP E P +++ RP +WP G I R L++RY + P VLK ITC
Sbjct: 1219 KMISVERILQYSKIPSEAPLVIDGHRPLDNWPNVGSIVFRDLQVRYAEHFPAVLKNITCE 1278
Query: 1240 FSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQE 1299
F G ++GVVGRTGSGK+TLI ALFR+VEP+ G+I+ID VDI +GL DLR +L IIPQ+
Sbjct: 1279 FPGGKKIGVVGRTGSGKSTLIQALFRIVEPSQGTIVIDNVDITKIGLHDLRSRLGIIPQD 1338
Query: 1300 PTLFRGSVRTNLDPLGLYSDDEIWK 1324
P LF G++R NLDPL Y+D EIW+
Sbjct: 1339 PALFDGTIRLNLDPLAQYTDHEIWE 1363
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/1161 (42%), Positives = 720/1161 (62%), Gaps = 26/1161 (2%)
Query: 198 TELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRE 257
T +AG+L LTFSW++PL+ +G K L LED+P L D KF +S
Sbjct: 244 TPYSRAGILSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLES---P 300
Query: 258 NNSNNNGNLVRKVITNVYLK---ENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENL 314
+ +G K+I +Y E + A A + T+A VGP L+ FV Y N +
Sbjct: 301 DGGERSGVTTFKLIKALYFTAQWEILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYN 360
Query: 315 QEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHST 374
EG +V K+VE +QRH FF ++ G+RMRSAL+ +Y+K L LS ++ ++
Sbjct: 361 HEGYVLVITFFAAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTS 420
Query: 375 GEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLN 434
GEI+N++ VDA R+G F ++ H W + LQ+ LA+ +L+ +GL ++ LV +I L+N
Sbjct: 421 GEIINFMTVDAERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLASIAALVATIIVMLIN 480
Query: 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLS 494
PF ++ ++ Q + M A+D R++STSEIL NM+I+KLQ WE KF S I R+ E WL
Sbjct: 481 FPFGRMQERFQEKLMEAKDSRMKSTSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLK 540
Query: 495 EAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPE 554
+ A + ++W +PT++S F C L G PL + I + LAT R + EP+ +P+
Sbjct: 541 KYVYNSAVISFVFWGAPTLVSVSTFGACILLG-IPLESGKILSALATFRILQEPIYNLPD 599
Query: 555 ALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLR 614
+S+++Q KVS DR+ ++L L D V R+ SD +V++ SWD + PTL+
Sbjct: 600 TISMIVQTKVSLDRLASYLCLDNLQPDIVERLPKGSSDVAVEVINSTLSWDVSSSNPTLK 659
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI 674
+N + K+AVCG+VG+GKSSLL ++LGE+PK+SG++ + G+ AYV+Q+ WIQSG I
Sbjct: 660 DINFKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGKI 719
Query: 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734
DNIL+GKPM++ RYDK ++AC+L KD+ GD T IG+RG+NLSGGQKQRIQ+ARA+
Sbjct: 720 EDNILFGKPMERERYDKVLEACSLSKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 779
Query: 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794
Y DADIYLFDDPFSAVDAHT + LF E ++ L K+VI VTHQVEFL D ILV++ G
Sbjct: 780 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDG 839
Query: 795 QITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLD------NAGQGGAEKVEKGRTARP 848
+I+Q+G Y ++L +GT F +L+ AH++A+ + +D + G + K A
Sbjct: 840 RISQAGKYNDILNSGTDFMELIGAHQEALAVVDSVDANSVSEKSALGQENVIVKDAIAVD 899
Query: 849 EEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLA 908
E+ + + E SV+ Q+ ++EE E G V + Y+ ++ G +L+ +L
Sbjct: 900 EKLESQDLKNDKLE---SVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALVPFILLG 956
Query: 909 QSGFVGLQAAATYWLAYA------IQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHL 962
Q F LQ + YW+A+A +Q P S ++I VY ++ S++ + R+
Sbjct: 957 QVLFQLLQIGSNYWMAWATPVSEDVQAPVKLSTLMI-VYVALAFGSSLCILLRATLLVTA 1015
Query: 963 GLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTE 1022
G K + F + IF++PM FFDSTP GRI++R S+D S +D ++P+ VA + +
Sbjct: 1016 GYKTATELFHKMHHCIFRSPMSFFDSTPSGRIMSRASTDQSAVDLELPYQFGSVAITVIQ 1075
Query: 1023 LLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQ 1082
L+ IIG+M+ V+W V +V I + A + QRYYIA AREL R+ G KAP++ + +ET
Sbjct: 1076 LIGIIGVMSQVSWLVFLVFIPVVAASIWYQRYYIAAARELSRLVGVCKAPLIQHFSETIS 1135
Query: 1083 GVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVL 1142
G TIR+F+ RF + ++L D + F+T G MEWL R++ L +LT + +FLV
Sbjct: 1136 GATTIRSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVS 1195
Query: 1143 IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202
IP G + P L GL+++Y +L Q +L C L N IISVERI Q+ +P EPP ++E
Sbjct: 1196 IPTGVIDPSLAGLAVTYGLSLNTLQAWLIWTLCNLENKIISVERILQYASVPSEPPLVIE 1255
Query: 1203 DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISA 1262
RP SWP +G +E+R L++RY P+ PLVL+GITCTF G R G+VGRTGSGK+TLI
Sbjct: 1256 SNRPEQSWPSRGEVEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQT 1315
Query: 1263 LFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEI 1322
LFR+VEP+ G I IDGV+I ++GL DLR++LSIIPQ+PT+F G++R+NLDPL Y+DD+I
Sbjct: 1316 LFRIVEPSAGEIRIDGVNILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQI 1375
Query: 1323 WKV---SQLTPNSRNSRIDID 1340
W+ QL R +D
Sbjct: 1376 WEALDKCQLGDEVRKKEQKLD 1396
|
Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 908 bits (2346), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/1296 (39%), Positives = 766/1296 (59%), Gaps = 39/1296 (3%)
Query: 72 CCAVVGIAYLGYCLWNLIAKNDSSMSWLVSTVRGLIWVSLAISLLVKRS----KWIRMLI 127
CC + + Y L + + + + +L + L W S+++ L + + + + L+
Sbjct: 67 CCVSLSVFYSVLSLLSCLHWHTNGWPFLDLLLAALTWGSISVYLFGRYTNSCEQKVLFLL 126
Query: 128 TLWWMSF---SLLVLALNIEILARTYTINVVYILPLPVNLLL-LFSAFRNFSHFTSPNRE 183
+WW+ F S L ++ + + ++V +++ V + LF R
Sbjct: 127 RVWWVFFFVVSCYHLVVDFVLYKKQEMVSVHFVISDLVGVCAGLFLCCSCLWKKGEGERI 186
Query: 184 DKSLSEPLL--AEKNQTE-----LGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVP 236
D L EPLL AE + E KAG+L +++FSW++PL++LG K + ++D+P L
Sbjct: 187 DL-LKEPLLSSAESSDNEEVTAPFSKAGILSRMSFSWMSPLITLGNEKIIDIKDVPQLDR 245
Query: 237 ED--EASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVV 294
D E+ F + WD R + L++ + +V+ ++ + A+ A + T++
Sbjct: 246 SDTTESLFWIFRSKLEWDDGERRITTFK---LIKALFLSVW-RDIVLSALLAFVYTVSCY 301
Query: 295 VGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354
V P L+ FV Y N + +G +V + K+VE TQR FF +++G+ MRS L+
Sbjct: 302 VAPYLMDNFVQYLNGNRQYKNQGYVLVTTFFVAKLVECQTQRQWFFRGQKAGLGMRSVLV 361
Query: 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFG 414
+Y+K L L ++ H++GEI+N +AVDA R+ F ++ H W L LQ+ LA+ +L+
Sbjct: 362 SMIYEKGLTLPCHSKQGHTSGEIINLMAVDADRISAFSWFMHDPWILVLQVSLALWILYK 421
Query: 415 VVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSW 474
+GLG++ ++ L N PFAK+ +K QS M ++D R++ TSE+L NMKI+KLQ W
Sbjct: 422 SLGLGSIAAFPATILVMLANYPFAKLEEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGW 481
Query: 475 EEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNAST 534
E KF S I R E WL + + + W +P+ IS+ F C L PL +
Sbjct: 482 EMKFLSKILELRHIEAGWLKKFVYNSSAINSVLWAAPSFISATAFGACLLL-KIPLESGK 540
Query: 535 IFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594
I LAT R + P+ +PE +S+++Q KVS +RI +FL +L D V R+ S+ +
Sbjct: 541 ILAALATFRILQGPIYKLPETISMIVQTKVSLNRIASFLCLDDLQQDVVGRLPSGSSEMA 600
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
V+I G FSWD IPTLR +N + +A+CG+VG+GKSSLL +ILGE+PKISG +
Sbjct: 601 VEISNGTFSWDDSSPIPTLRDMNFKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGNL 660
Query: 655 NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714
+ G AY++Q+ WIQSG + +NIL+GKPM++ YD+ ++AC+L+KD+ D T IG
Sbjct: 661 KVCGRKAYIAQSPWIQSGKVEENILFGKPMEREWYDRVLEACSLNKDLEILPFHDQTVIG 720
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL 774
+RG+NLSGGQKQRIQ+ARA+Y DADIYLFDDPFSAVDAHT + LF E ++ L KTVI
Sbjct: 721 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTVIY 780
Query: 775 VTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQ 834
VTHQVEFL E D ILV++ G+ITQ+G Y E+L +GT F +LV AH +A L +D+
Sbjct: 781 VTHQVEFLPEADLILVMKDGKITQAGKYHEILDSGTDFMELVGAHTEA---LATIDSCET 837
Query: 835 GGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLN 894
G A EK T ++ N + KE E K QL ++EE E G VG+ + Y+
Sbjct: 838 GYAS--EKSTT---DKENEVLHHKEKQENGSDNKPSGQLVQEEEREKGKVGFTVYKKYMA 892
Query: 895 VSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI-----PKITSGILIGVYAGVSTASA 949
++ G +++ L ++ Q F L + YW+ + + P ++ LI VY ++ AS+
Sbjct: 893 LAYGGAVIPLILVVQVLFQLLSIGSNYWMTWVTPVSKDVEPPVSGFTLILVYVLLAVASS 952
Query: 950 VFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDI 1009
+ R+ A G K + F+ IF+A M FFD+TP+GRIL R S+D S+ D +
Sbjct: 953 FCILIRALLVAMTGFKMATELFTQMHLRIFRASMSFFDATPMGRILNRASTDQSVADLRL 1012
Query: 1010 PFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTT 1069
P +VA + +L IIG++ V WQVL+V I + A + ++YYI+ AREL R+ G +
Sbjct: 1013 PGQFAYVAIAAINILGIIGVIVQVAWQVLIVFIPVVAACAWYRQYYISAARELARLAGIS 1072
Query: 1070 KAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQ 1129
++PV+++ +ET G+ TIR+F+ RF + ++L D + L FH+ G MEWL R+E L
Sbjct: 1073 RSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKFHSTGAMEWLCFRLELLS 1132
Query: 1130 NLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189
++ + LV P G + P L GL+++YA L Q L C L N +ISVER+ Q
Sbjct: 1133 TFAFASSLVILVSAPEGVINPSLAGLAITYALNLNTLQATLIWTLCDLENKMISVERMLQ 1192
Query: 1190 FMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVV 1249
+ +IP EPP ++E RP SWP +G I + L++RY P+ P+VL G+TCTF G + G+V
Sbjct: 1193 YTNIPSEPPLVIETTRPEKSWPSRGEITICNLQVRYGPHLPMVLHGLTCTFPGGLKTGIV 1252
Query: 1250 GRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRT 1309
GRTG GK+TLI LFR+VEPA G I IDG++I S+GL DLR +LSIIPQ+PT+F G++R+
Sbjct: 1253 GRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILSIGLHDLRSRLSIIPQDPTMFEGTIRS 1312
Query: 1310 NLDPLGLYSDDEIWKV---SQLTPNSRNSRIDIDFP 1342
NLDPL Y+DD+IW+ QL R + +D P
Sbjct: 1313 NLDPLEEYTDDQIWEALDNCQLGDEVRKKELKLDSP 1348
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/1162 (40%), Positives = 698/1162 (60%), Gaps = 26/1162 (2%)
Query: 193 AEKNQ--TELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKF--A 248
AE ++ T AG L ++FSW++PL+ LG K + ED+P + D A + F
Sbjct: 223 AEDDEVVTPFSNAGFLSHVSFSWMSPLIVLGNEKIIDSEDVPQVDNSDRAEKLFWIFRSK 282
Query: 249 YAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN 308
WD R + L++ + +V+ ++ + + A + T++ V P L+ FV Y N
Sbjct: 283 LEWDDGERRITTYK---LIKALFFSVW-RDILLSTLFAFVYTVSCYVAPYLMDTFVQYLN 338
Query: 309 RGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLG 368
+ +G+ +V + K+VE +R+ +F +++G+ MRS L+ +Y+K L L
Sbjct: 339 GQRQYSNQGVVLVTTFFVAKLVECQARRNWYFRLQKAGIGMRSVLVSMIYEKGLTLPCYS 398
Query: 369 RKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428
++ H++GEI+N + VDA R+ F ++ H W L LQ+ LA+ +L+ +GLG++
Sbjct: 399 KQGHTSGEIINLMTVDAERISAFSWYMHDPWILVLQISLALLILYRSLGLGSIAAFAATF 458
Query: 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREK 488
+ L N+P AK+ +K Q M ++D R++ TSE L NM+I+KLQ WE KF I R
Sbjct: 459 LVMLGNIPLAKLEEKFQGNLMESKDNRMKKTSEALLNMRILKLQGWEMKFLHKILDLRGI 518
Query: 489 EFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEP 548
E WL + A + + W +P+ +S+ F C L PL + I LAT R + P
Sbjct: 519 EAGWLKKFVYNSAAISSVLWAAPSFVSATAFGACMLL-KIPLESGKIIAALATFRILQTP 577
Query: 549 VRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPEL 608
+ +P+ +S+++Q KVS DRI FL +L D + R+ S V++ G FSWD
Sbjct: 578 IYKLPDTISMIVQTKVSLDRIATFLCLDDLQQDGMERLPSGSSKMDVEVSNGAFSWDDSS 637
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668
IPTL+ + I IA+CG+VG+GKSSLL +ILGE+PKISG + + G AY++Q+ W
Sbjct: 638 PIPTLKDIRFKIPHGMNIAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPW 697
Query: 669 IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728
IQSG + +NIL+GKPM + Y + ++AC+L+KD+ F D T IG+RG+NLSGGQKQRI
Sbjct: 698 IQSGKVEENILFGKPMQREWYQRVLEACSLNKDLEVFPFRDQTVIGERGINLSGGQKQRI 757
Query: 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRI 788
Q+ARA+Y DADIYLFDDPFSAVDAHT + LF E ++ L KTVI VTHQ+EFL E D I
Sbjct: 758 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRNKTVIYVTHQLEFLPEADLI 817
Query: 789 LVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARP 848
LV++ G+ITQ+G Y E+L +GT F +LV AH DA L +D+ +G A ++
Sbjct: 818 LVMKDGRITQAGKYNEILESGTDFMELVGAHTDA---LAAVDSYEKGSA----SAQSTTS 870
Query: 849 EEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLA 908
+E ++ E S KG QL ++EE E G VG+ + Y+ ++ G +L+ + ++
Sbjct: 871 KESKVSNDEEKQEEDLPSPKG--QLVQEEEREKGKVGFTVYQKYMKLAYGGALVPIILVV 928
Query: 909 QSGFVGLQAAATYWLAYAIQI-----PKITSGILIGVYAGVSTASAVFVYFRSFFAAHLG 963
Q F L + YW+A+ + P ++ LI VY ++TAS+ + R+ +A G
Sbjct: 929 QILFQVLNIGSNYWMAWVTPVSKDVKPLVSGSTLILVYVFLATASSFCILVRAMLSAMTG 988
Query: 964 LKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023
K + F+ IF+A M FFD+TP+GRIL R S+D S +D +P +A + +
Sbjct: 989 FKIATELFNQMHFRIFRASMSFFDATPIGRILNRASTDQSAVDLRLPSQFSNLAIAAVNI 1048
Query: 1024 LAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQG 1083
L IIG+M V WQVL+V I + A + ++YYI+ AREL R++G +++P++ + +ET G
Sbjct: 1049 LGIIGVMGQVAWQVLIVFIPVIAACTWYRQYYISAARELARLSGISRSPLVQHFSETLSG 1108
Query: 1084 VVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLI 1143
+ TIR+F+ RF + ++L D + L FH MEWL R++ L + + + LV +
Sbjct: 1109 ITTIRSFDQEPRFRTDIMRLNDCYSRLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSV 1168
Query: 1144 PRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVED 1203
P G + P GL+++YA L Q L C L N +ISVER+ Q++ IP EP ++E
Sbjct: 1169 PEGVINPSFAGLAVTYALNLNSLQATLIWTLCDLENKMISVERMLQYIDIPSEPSLVIES 1228
Query: 1204 KRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISAL 1263
RP SWP +G I + L++RY P+ P+VL+G+TCTF G + G+VGRTG GK+TLI L
Sbjct: 1229 TRPEKSWPCRGEITICNLQVRYGPHLPMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTL 1288
Query: 1264 FRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIW 1323
FR+VEPA G I IDG++I ++GL DLR +LSIIPQEPT+F G+VR+NLDPL Y+DD+IW
Sbjct: 1289 FRIVEPAAGEIRIDGINILTIGLHDLRSRLSIIPQEPTMFEGTVRSNLDPLEEYADDQIW 1348
Query: 1324 KV---SQLTPNSRNSRIDIDFP 1342
+ QL R + +D P
Sbjct: 1349 EALDKCQLGDEIRKKELKLDSP 1370
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/1323 (37%), Positives = 748/1323 (56%), Gaps = 83/1323 (6%)
Query: 65 VSIVVSACCAVVGIAYLGYCLWNLIAKNDSSMSWLVSTVRGLIWVSLAISL--------- 115
V+IV+S C V+ ++ L K ++ WL+ V ++ L + L
Sbjct: 103 VTIVLSFCSLVLCVSAFFTTRTKL--KLVDTLFWLIHAVTNVVIAVLVLHLKRFASPSHP 160
Query: 116 LVKRSKWI-RMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFR-- 172
L R W+ ++T + +L L + A +V + P+ +LL + +
Sbjct: 161 LTLRIYWVFNFVVTTLFTVSGILHLLSDDPAAASLRADDVASFISFPLTAVLLLVSIKGS 220
Query: 173 -----NFSHFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLA 227
S+ T+P + + + E +N + A + K + W+NPLL GY PL
Sbjct: 221 TGVVVTTSNVTAPAKSNDVVVE---KSENVSLYASASFISKTFWLWMNPLLRKGYKSPLN 277
Query: 228 LEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICAL 287
L+ +P+L PE A F W N+ N VR + + KE F A+ A+
Sbjct: 278 LDQVPTLSPEHRAEKLATLFESKW-----PKPQENSRNPVRTTLIRCFWKEIAFTAVLAI 332
Query: 288 LRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347
+R + VGP+L+ +FV++++ + +G +V L+I K VE + F S++ GM
Sbjct: 333 IRLSVIYVGPVLIQSFVDFTSGKRSSPSQGYYLVLILLIAKFVEVLSTHQFNFNSQKLGM 392
Query: 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFL 407
+RS L+ A+Y+K LKL+ R+ H G+IVNY+AVDA ++ + H W + LQ+
Sbjct: 393 LIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVAA 452
Query: 408 AIGVLFGVVGLG------ALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSE 461
AI +L+ +G L G+ +F++ G K + Q M+ +D R+++T+E
Sbjct: 453 AIVLLYNTLGPSVVTTVIGLTGIFVFILLG------TKRNNRYQFSLMMNRDSRMKATNE 506
Query: 462 ILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLG 521
+LN M++IK Q+WE+ F I RE EF WLS+ A ++ W +P +IS++ F
Sbjct: 507 MLNYMRVIKFQAWEDHFNERILKFREMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFTT 566
Query: 522 CALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581
G L+A T+FT + + EP+R P+++ + Q +S R++A+++ EL+ +
Sbjct: 567 AVFLG-VKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDAYMMSRELSEE 625
Query: 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLY 641
V R + +V+I++G+FSWD E P + +N ++K + A+ G+VG+GKSSLL
Sbjct: 626 TVERSQGCDGNVAVEIKDGSFSWDDEDDEPAIENINFEVKKGELAAIVGTVGSGKSSLLA 685
Query: 642 AILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
++LGE+ K+SG V + G+ AYV+QTSWIQ+G+++DNIL+G PM++++Y++ +K C L+KD
Sbjct: 686 SVLGEMHKLSGKVRVCGTTAYVAQTSWIQNGTVQDNILFGLPMNRSKYNEVLKVCCLEKD 745
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ + GD TEIG+RG+NLSGGQKQRIQLARAVY ++D+YL DD FSAVDAHT + +F +
Sbjct: 746 MQIMEFGDQTEIGERGINLSGGQKQRIQLARAVYQESDVYLLDDVFSAVDAHTGSDIFKK 805
Query: 762 CVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRD 821
CV AL+ KT++LVTHQV+FL VDRILV+ G I QSG Y EL+ +G F +LV AH
Sbjct: 806 CVRGALKGKTILLVTHQVDFLHNVDRILVMRDGMIVQSGKYDELVSSGLDFGELVAAHET 865
Query: 822 AITGLGP----------------------LDNAGQGGAEKVEKGRTARPEEPNGIY---- 855
++ + +++ Q + KV RT E P +
Sbjct: 866 SMELVEAGSASATAANVPMASPITQRSISIESPRQPKSPKVH--RTTSMESPRVLRTTSM 923
Query: 856 --PRKESSEGEISVKGL---------TQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCL 904
PR E S+K ++L ++EE E+G V ++ + Y + G + L
Sbjct: 924 ESPRLSELNDE-SIKSFLGSNIPEDGSRLIKEEEREVGQVSFQVYKLYSTEAYGWWGMIL 982
Query: 905 GVLAQSGFVGLQAAATYWLAYAIQIPKITS---GILIGVYAGVSTASAVFVYFRSFFAAH 961
V + A+ YWLAY S + I VY ++ S V V R+F+ H
Sbjct: 983 VVFFSVAWQASLMASDYWLAYETSAKNEVSFDATVFIRVYVIIAAVSIVLVCLRAFYVTH 1042
Query: 962 LGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGT 1021
LGLK ++ FF NS+ APM FFD+TP GRIL+R S+D + +D IPF I VA T
Sbjct: 1043 LGLKTAQIFFKQILNSLVHAPMSFFDTTPSGRILSRASTDQTNVDIFIPFMIGLVATMYT 1102
Query: 1022 ELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETS 1081
LL+I + W + I + + YY+A++REL R++ TKAPV+++ +E+
Sbjct: 1103 TLLSIFIVTCQYAWPTVFFIIPLGWLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESI 1162
Query: 1082 QGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV 1141
GV+TIRAF F Q +K V+ + + FH NG EWL R+E + + L +ALF+V
Sbjct: 1163 AGVMTIRAFKKQPMFRQENVKRVNANLRMDFHNNGSNEWLGFRLELIGSWVLCISALFMV 1222
Query: 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIV 1201
++P + P VGLSLSY +L G + C++ N ++SVERIKQF IP E +
Sbjct: 1223 MLPSNIIKPENVGLSLSYGLSLNGVLFWAIYLSCFIENKMVSVERIKQFTDIPAEAKWEI 1282
Query: 1202 EDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLIS 1261
++ RPP +WP+KG I L +K+RYRPN PLVLKG+T G ++GVVGRTGSGK+TLI
Sbjct: 1283 KESRPPPNWPYKGNIRLEDVKVRYRPNTPLVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQ 1342
Query: 1262 ALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDE 1321
LFRLVEP+GG I+IDG+DIC++GL DLR + IIPQEP LF G+VR+N+DP YSD+E
Sbjct: 1343 VLFRLVEPSGGKIIIDGIDICTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEKYSDEE 1402
Query: 1322 IWK 1324
IWK
Sbjct: 1403 IWK 1405
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/1306 (38%), Positives = 740/1306 (56%), Gaps = 72/1306 (5%)
Query: 64 CVSIVVSACCAVVGI-AYLGYCL----WNLIAKNDSSMSWLVSTVRGLIWVSLAISLLVK 118
V++++S C V+ + A+ G WNLI + WL+ V L+ I++LV
Sbjct: 104 AVTVLLSFCSVVLCVLAFTGKRRTQRPWNLI----DPLFWLIHAVTHLV-----IAVLVL 154
Query: 119 RSKWIRML-----ITLWWMS----FSLLVLALNIEILARTYTI----NVVYILPLPVNLL 165
K L + ++W+S SL + L+ T +V P+
Sbjct: 155 HQKRFAALNHPLSLRIYWISSFVLTSLFAVTGIFHFLSDAATSLRAEDVASFFSFPLTAF 214
Query: 166 LLFSAFRNFSHF-TSPNREDKSLSEPLLAEK--NQTELGKAGLLRKLTFSWINPLLSLGY 222
LL ++ R + T+ S+ + EK N + A + K + W+NPLLS GY
Sbjct: 215 LLIASVRGITGLVTAETNSPTKPSDAVSVEKSDNVSLYASASVFSKTFWLWMNPLLSKGY 274
Query: 223 SKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFI 282
PL LE +P+L PE +A F +W S N+ + +R + + KE +F
Sbjct: 275 KSPLTLEQVPTLSPEHKAERLALLFESSW-----PKPSENSSHPIRTTLLRCFWKEILFT 329
Query: 283 AICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGS 342
AI A++R + VGP+L+ +FV++++ + +G +V L++ K VE T F S
Sbjct: 330 AILAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQGYYLVLILLVAKFVEVLTTHQFNFDS 389
Query: 343 RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLA 402
++ GM +RS L+ A+Y+K LKL+ R+ H G+IVNY+AVDA ++ + H W +
Sbjct: 390 QKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMP 449
Query: 403 LQLFLAIGVLFGVVGLG------ALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERL 456
LQ+ +A+ +L+G +G L G+ +F++ G + Q M +D R+
Sbjct: 450 LQVTVALVLLYGSLGASVITAVIGLTGVFVFILLG------TQRNNGYQFSLMGNRDSRM 503
Query: 457 RSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISS 516
++T+E+LN M++IK Q+WE F I R+ EF WLS+ A ++ W +P +IS+
Sbjct: 504 KATNEMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKFLYSIAGNIIVLWSTPVLISA 563
Query: 517 VIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH 576
+ F AL L+A T+FT + + EP+R P+++ + Q +S R++++++
Sbjct: 564 LTF-ATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDSYMMSK 622
Query: 577 ELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGK 636
EL+ D V R + +V++++G+FSWD E P L +N +K + A+ G+VG+GK
Sbjct: 623 ELSEDAVERALGCDGNTAVEVRDGSFSWDDEDNEPALSDINFKVKKGELTAIVGTVGSGK 682
Query: 637 SSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKAC 696
SSLL ++LGE+ +ISG V + GS YV+QTSWI++G+++DNIL+G PM + +Y+K + C
Sbjct: 683 SSLLASVLGEMHRISGQVRVCGSTGYVAQTSWIENGTVQDNILFGLPMVREKYNKVLNVC 742
Query: 697 ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA 756
+L+KD+ + GD TEIG+RG+NLSGGQKQRIQLARAVY + D+YL DD FSAVDAHT +
Sbjct: 743 SLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLARAVYQECDVYLLDDVFSAVDAHTGS 802
Query: 757 TLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
+F +CV AL+ KTV+LVTHQV+FL VD ILV+ G+I +SG Y EL+ +G F +LV
Sbjct: 803 DIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIVESGKYDELVSSGLDFGELV 862
Query: 817 NAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEIS---------- 866
AH ++ L AG A RT P P+ PR +S
Sbjct: 863 AAHETSME----LVEAGADSAAVATSPRT--PTSPHASSPRTSMESPHLSDLNDEHIKSF 916
Query: 867 -----VKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATY 921
V+ ++L ++EE E G V + Y + G + L + + G A+ Y
Sbjct: 917 LGSHIVEDGSKLIKEEERETGQVSLGVYKQYCTEAYGWWGIVLVLFFSLTWQGSLMASDY 976
Query: 922 WLAYAIQIPKITS---GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSI 978
WLAY S + I Y ++ S V V RS++ HLGLK ++ FF NSI
Sbjct: 977 WLAYETSAKNAISFDASVFILGYVIIALVSIVLVSIRSYYVTHLGLKTAQIFFRQILNSI 1036
Query: 979 FKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVL 1038
APM FFD+TP GRIL+R S+D + +D IPF + V + T LL+I + W
Sbjct: 1037 LHAPMSFFDTTPSGRILSRASTDQTNVDILIPFMLGLVVSMYTTLLSIFIVTCQYAWPTA 1096
Query: 1039 VVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQ 1098
I + + YY+A++REL R++ TKAP++++ +E+ GV+TIR+F + F Q
Sbjct: 1097 FFVIPLGWLNIWYRNYYLASSRELTRMDSITKAPIIHHFSESIAGVMTIRSFRKQELFRQ 1156
Query: 1099 NYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLS 1158
+K V+ + + FH NG EWL R+E + + L +ALF+VL+P + P VGLSLS
Sbjct: 1157 ENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCISALFMVLLPSNVIRPENVGLSLS 1216
Query: 1159 YAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIEL 1218
Y +L F C++ N ++SVERIKQF IP E ++ PPS+WPF G + L
Sbjct: 1217 YGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPSESEWERKETLPPSNWPFHGNVHL 1276
Query: 1219 RQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278
LK+RYRPN PLVLKGIT G +VGVVGRTGSGK+TLI LFRLVEP+GG I+IDG
Sbjct: 1277 EDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDG 1336
Query: 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWK 1324
+DI ++GL DLR + IIPQEP LF G+VR+N+DP YSD+EIWK
Sbjct: 1337 IDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIWK 1382
|
Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/952 (43%), Positives = 584/952 (61%), Gaps = 50/952 (5%)
Query: 381 IAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKI 440
++VD R+ +F ++ + W L +Q+F AI +L +GLGAL LV L+ N P ++
Sbjct: 1 MSVDVQRITDFIWYVNSIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVMACNYPLTRL 60
Query: 441 LQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK 500
+ QS+ M A+D+R+++TSEIL NMKI+KLQ+W+ +F + +++ R+KE+ L ++ +
Sbjct: 61 QRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQ 120
Query: 501 AYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMI 560
+ T I W +P++IS V F+ C L G L A + + LAT + + P+ +P+ LS ++
Sbjct: 121 DFTTFILWGAPSLISVVTFVTCMLMG-VKLTAGAVLSALATFQMLQSPIFGLPDLLSALV 179
Query: 561 QVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620
Q KVS DRI ++L E D V S ++ SV+I+ G FSW+PE + PTL + L +
Sbjct: 180 QSKVSADRIASYLQQSETQKDAVEYCSNDHTEFSVEIENGAFSWEPESSRPTLDDIELKV 239
Query: 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILY 680
K K+A+CG+VG+GKSSL +ILGEI K+ GTV + G AYV Q+ WI SG+IRDNIL+
Sbjct: 240 KSGMKVAICGAVGSGKSSLPSSILGEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNILF 299
Query: 681 GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740
G + +Y++ +KACAL KD F +GDLTEIG+RG+N+SGGQKQRIQ+ARAVY +ADI
Sbjct: 300 GSIYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVYQNADI 359
Query: 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
YL DDPFSAVDAHT LF +C+M L+ KTV+ VTHQVEFL D ILV++ G++ Q+G
Sbjct: 360 YLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQAG 419
Query: 801 NYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKES 860
++ELL FE L
Sbjct: 420 KFEELLKQNIGFEVLTQC-----------------------------------------D 438
Query: 861 SEGEISV---KGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQA 917
SE IS K +L +DEE E G +G + ++ YL KG L+ +LAQS F LQ
Sbjct: 439 SEHNISTENKKKEAKLVQDEETEKGVIGKEVYLTYLTTVKGGLLVPFIILAQSCFQMLQI 498
Query: 918 AATYWLAY-----AIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFS 972
A+ YW+A+ A IPK+ G ++ VYA ++ S++ V R+ A GL ++ FFS
Sbjct: 499 ASNYWMAWTAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFFS 558
Query: 973 GFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTF 1032
SIF+APM +FDSTP GRIL R S+D S+LD ++ + + A S +++ I +M+
Sbjct: 559 RMLCSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQ 618
Query: 1033 VTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNM 1092
V WQV V+ I VA F QRYY T REL R++G +AP++++ AE+ G TIRAF+
Sbjct: 619 VAWQVCVIFIPVAVACVFYQRYYTPTERELSRMSGVERAPILHHFAESLAGATTIRAFDQ 678
Query: 1093 VDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGL 1152
DRF + L L+D + +FH MEWL R+ L + + + LV +P G + P +
Sbjct: 679 RDRFISSNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSI 738
Query: 1153 VGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPF 1212
GL ++Y +L Q + C N +ISVERI Q IP E P +++D+RP +WP
Sbjct: 739 AGLGVTYGLSLNVLQATVIWNICNAENKMISVERILQHSKIPSEAPLVIDDQRPLDNWPN 798
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
G I R L++RY + P VLK ITC F G ++GVVGRTGSGK+TLI ALFR+VEP+ G
Sbjct: 799 VGSIVFRDLQVRYAEHFPAVLKNITCAFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSHG 858
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWK 1324
+I+ID VDI +GL DLR +L IIPQ+ LF G++R NLDPL Y+D EIW+
Sbjct: 859 TIVIDNVDITKIGLHDLRSRLGIIPQDNALFDGTIRLNLDPLAQYTDREIWE 910
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1361 | ||||||
| 255572985 | 1475 | multidrug resistance-associated protein | 0.963 | 0.889 | 0.728 | 0.0 | |
| 359482526 | 1469 | PREDICTED: ABC transporter C family memb | 0.969 | 0.897 | 0.719 | 0.0 | |
| 359482528 | 1465 | PREDICTED: ABC transporter C family memb | 0.963 | 0.895 | 0.701 | 0.0 | |
| 359482524 | 1462 | PREDICTED: ABC transporter C family memb | 0.969 | 0.902 | 0.706 | 0.0 | |
| 358349246 | 1549 | Multidrug resistance protein ABC transpo | 0.960 | 0.843 | 0.679 | 0.0 | |
| 356528857 | 1469 | PREDICTED: ABC transporter C family memb | 0.961 | 0.891 | 0.680 | 0.0 | |
| 357515353 | 1463 | ABC transporter C family member [Medicag | 0.963 | 0.896 | 0.665 | 0.0 | |
| 356522202 | 1951 | PREDICTED: ABC transporter C family memb | 0.955 | 0.666 | 0.670 | 0.0 | |
| 356526035 | 1465 | PREDICTED: ABC transporter C family memb | 0.962 | 0.894 | 0.672 | 0.0 | |
| 356528827 | 1494 | PREDICTED: ABC transporter C family memb | 0.958 | 0.872 | 0.653 | 0.0 |
| >gi|255572985|ref|XP_002527423.1| multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative [Ricinus communis] gi|223533233|gb|EEF34989.1| multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1968 bits (5098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 963/1322 (72%), Positives = 1107/1322 (83%), Gaps = 10/1322 (0%)
Query: 9 GGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRRECVSIV 68
G LSW CE + DLGS C Q IID+INLVF VFYL LL+GS RK+ G RR+ +S+V
Sbjct: 16 GELSWICEEKLDLGSPCTQRIIIDIINLVFLGVFYLFLLLGSIRKHQVSGSNRRDWISVV 75
Query: 69 VSACCAVVGIAYLGYCLWNLIAKNDS--SMSWLVSTVRGLIWVSLAISLLVKRSKWIRML 126
VS CC ++ IAYLG LW+LIAKN S +SWLV VRG+IW+S+A+SLLV RS+W R+L
Sbjct: 76 VSICCTLISIAYLGVGLWDLIAKNHSFNHLSWLVYLVRGIIWISVAVSLLVTRSRWNRIL 135
Query: 127 ITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPNREDKS 186
+T+WW+SFSLL ALNIEILAR +I V+ ILP PVN LLL A RNFSHF+S K+
Sbjct: 136 VTVWWVSFSLLASALNIEILARANSIQVLDILPWPVNFLLLLCALRNFSHFSSQQASYKN 195
Query: 187 LSEPLLAEK--NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAY 244
L EPLL K +L A L LTFSWINPLL LGYSKPL EDIPSL+PEDEA AY
Sbjct: 196 LFEPLLGAKEVKNQKLAHASFLSNLTFSWINPLLKLGYSKPLDDEDIPSLLPEDEADIAY 255
Query: 245 QKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFV 304
QKFA+AWDSL+RENNSN+ GNLV + + V+LKENIFI ALLR IAV V PLLLYAFV
Sbjct: 256 QKFAHAWDSLIRENNSNDTGNLVLEAVAKVHLKENIFIGTYALLRAIAVAVLPLLLYAFV 315
Query: 305 NYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKL 364
NYSN ++NL +GLSIVGCLI+ KVVES +QR FF +R+SGMR+RSALMVAVYQKQL L
Sbjct: 316 NYSNLDQQNLYQGLSIVGCLILVKVVESLSQRRSFFLARQSGMRIRSALMVAVYQKQLNL 375
Query: 365 SSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGL 424
SSL R++HSTGE VNYIAVDAYRMGEFP+WFH TW+ LQLFL+I +LFGVVGLGA+ GL
Sbjct: 376 SSLARRRHSTGEFVNYIAVDAYRMGEFPWWFHATWAYVLQLFLSIIILFGVVGLGAVTGL 435
Query: 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES 484
V LICGLLNVPFA+ LQKCQS+FMIAQDERLR+TSEILNNMKIIKLQSWEEKFKS IES
Sbjct: 436 VPLLICGLLNVPFARFLQKCQSKFMIAQDERLRATSEILNNMKIIKLQSWEEKFKSYIES 495
Query: 485 RREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRS 544
R+ EFKWL+E+Q++K YGT++YW+SPTIISSV+F+GCAL SAPLN+STIFTVLATLRS
Sbjct: 496 LRDTEFKWLTESQIKKTYGTILYWLSPTIISSVVFVGCALFRSAPLNSSTIFTVLATLRS 555
Query: 545 MGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSW 604
M EPVRMIPEALSI+IQVKVSFDRIN FLLD EL N+ + S S S+ ++ G FSW
Sbjct: 556 MAEPVRMIPEALSILIQVKVSFDRINNFLLDDELKNESISTNSSYNSGESITVEGGKFSW 615
Query: 605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVS 664
DPEL++PTLR VNLDIK QK AVCG VGAGKSSLLYA+LGEIPKISGTVN++GSIAYVS
Sbjct: 616 DPELSMPTLREVNLDIKRGQKFAVCGPVGAGKSSLLYAMLGEIPKISGTVNVFGSIAYVS 675
Query: 665 QTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724
QTSWIQSG++RDNILYGKPMD+ +Y++AIKACALDKDIN+F+HGDLTEIGQRGLN+SGGQ
Sbjct: 676 QTSWIQSGTVRDNILYGKPMDQEKYERAIKACALDKDINSFNHGDLTEIGQRGLNMSGGQ 735
Query: 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784
KQRIQLARAVYNDADIYL DDPFSAVDAHTAA LFN+C+M ALE KTVILVTHQV+FLS
Sbjct: 736 KQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCIMTALENKTVILVTHQVDFLSS 795
Query: 785 VDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGR 844
VD+ILV+EGGQITQSG+Y+ELL+A TAFEQLVNAH+D++T LG D + +G + K +
Sbjct: 796 VDQILVMEGGQITQSGSYEELLMACTAFEQLVNAHKDSVTVLGSYDKS-RGESLKAD--- 851
Query: 845 TARPEEPNGIYPRKESSEGEISVKGLT--QLTEDEEMEIGDVGWKPFMDYLNVSKGMSLL 902
R E+ + K++SEGEIS+KG+ QLTE+EE IG+VGWKPF+DY+ +SKG
Sbjct: 852 IVRQEDFSVSSHAKQNSEGEISMKGVAGVQLTEEEEKGIGNVGWKPFLDYILISKGTLFA 911
Query: 903 CLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHL 962
L L+ GF+GLQAAATYWLAYA+QIP+I S +LIGVY +S+ SA FVY RS+ A L
Sbjct: 912 SLSTLSICGFIGLQAAATYWLAYAVQIPEIRSSMLIGVYTLISSLSASFVYLRSYLAVLL 971
Query: 963 GLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTE 1022
GLKASK+FFSGFTN+IFKAPMLFFDSTPVGRILTR SSDLSILDFDIPFS VF A E
Sbjct: 972 GLKASKSFFSGFTNTIFKAPMLFFDSTPVGRILTRASSDLSILDFDIPFSYVFAAGGLVE 1031
Query: 1023 LLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQ 1082
L+ IGIM VTWQVLV+A+ A+V +++Q YY+A+ARELIRINGTTKAPVMNY AETS
Sbjct: 1032 LVVTIGIMASVTWQVLVIAVLAIVGAKYIQDYYLASARELIRINGTTKAPVMNYAAETSL 1091
Query: 1083 GVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVL 1142
GVVTIRAF MV+RFFQNYLKLVD DA LFF +NG MEWLI+R EALQN+TLFTAAL LVL
Sbjct: 1092 GVVTIRAFKMVNRFFQNYLKLVDKDAVLFFLSNGAMEWLIIRTEALQNVTLFTAALLLVL 1151
Query: 1143 IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202
+P+G V PGL+GLSLSYA +LTGTQVF++RWYC LANY+ISVERIKQFMHIP EPPA+VE
Sbjct: 1152 LPKGVVTPGLIGLSLSYALSLTGTQVFVTRWYCNLANYVISVERIKQFMHIPSEPPAVVE 1211
Query: 1203 DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISA 1262
D RPPSSWP +GRIEL+ LKIRYRPNAPLVLKGI C F EGTRVGVVGRTGSGKTTLISA
Sbjct: 1212 DNRPPSSWPPEGRIELQDLKIRYRPNAPLVLKGINCIFEEGTRVGVVGRTGSGKTTLISA 1271
Query: 1263 LFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEI 1322
LFRLVEPA G ILIDG+DICS+GL+DLR KLSIIPQE TLFRGSVRTNLDPLGLYSD EI
Sbjct: 1272 LFRLVEPASGRILIDGLDICSIGLRDLRTKLSIIPQEATLFRGSVRTNLDPLGLYSDPEI 1331
Query: 1323 WK 1324
W+
Sbjct: 1332 WE 1333
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482526|ref|XP_002276212.2| PREDICTED: ABC transporter C family member 8-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1924 bits (4985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 957/1331 (71%), Positives = 1097/1331 (82%), Gaps = 12/1331 (0%)
Query: 1 MAFLGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRI 60
MAFL GLSW C E D+GSFCIQ +I+DV+NL+F VF + L++GS RK+
Sbjct: 1 MAFLKNSFSGLSWMCGEELDMGSFCIQRSILDVLNLLFLSVFCVLLVIGSIRKHEISRCS 60
Query: 61 RRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSSM--SWLVSTVRGLIWVSLAISLLVK 118
RR+ VS VS CCA++ I YL W+L AKN+ SW V VRGLIW+SL +SLLV+
Sbjct: 61 RRDWVSRGVSICCALISIGYLSAGFWDLYAKNEGPRLSSWPVYFVRGLIWISLTVSLLVQ 120
Query: 119 RSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFT 178
RSKW R+L ++WWMSF LLV ALNIEI+ T++I + ++P VN LLLF AFRN
Sbjct: 121 RSKWTRILSSIWWMSFFLLVSALNIEIIVETHSIQIFVMVPWLVNFLLLFCAFRNICPSL 180
Query: 179 SPNREDKSLSEPLLAE---KNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLV 235
S DKS+SEPLLA+ K+ + K+ + KLTFSWINPLL LGYSKPL LEDIPSL
Sbjct: 181 SLEASDKSVSEPLLAKNPVKSSIDFSKSSFISKLTFSWINPLLRLGYSKPLVLEDIPSLT 240
Query: 236 PEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVV 295
PEDEA AY+ FA+AW+ L RE NS N NLV + + VY KE +F+AICALLRTI+VVV
Sbjct: 241 PEDEAELAYKNFAHAWELLQREKNSTNTSNLVLRALAKVYWKETVFVAICALLRTISVVV 300
Query: 296 GPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355
PLLLYAFVNYSNR EENL EGL +VGCL+I KVVES +QRH F SRRSGMRMRSALMV
Sbjct: 301 SPLLLYAFVNYSNRKEENLSEGLFLVGCLVIAKVVESVSQRHWFLDSRRSGMRMRSALMV 360
Query: 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGV 415
AVYQKQLKLSSLGR++HS GEIVNYI VDAYRM EF +WFH WS LQLFL+IGVLF V
Sbjct: 361 AVYQKQLKLSSLGRRRHSAGEIVNYIVVDAYRMAEFLWWFHSMWSYMLQLFLSIGVLFVV 420
Query: 416 VGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWE 475
VGLGAL GLV ICG LNVPFAKIL+ CQ+E M+AQD RLRSTSEILN+MK+IKLQSWE
Sbjct: 421 VGLGALSGLVPLFICGFLNVPFAKILKTCQTELMMAQDRRLRSTSEILNSMKVIKLQSWE 480
Query: 476 EKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTI 535
+KFK+LIES RE EFKWL+EAQ +K Y TV+YW+SPTIISSVIF+GCAL G APLNASTI
Sbjct: 481 DKFKNLIESLREVEFKWLAEAQYKKCYNTVLYWLSPTIISSVIFVGCALLG-APLNASTI 539
Query: 536 FTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSV 595
FT+LA LR MGEPVRMIPEALS +IQVKVSFDR+NAFLLD EL ++++R ++ S SV
Sbjct: 540 FTILAALRCMGEPVRMIPEALSALIQVKVSFDRLNAFLLDDELKSEEIRHVTWPNSGHSV 599
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655
KI G FSW+PE AI TLR VNL ++ KIA+CG VGAGKSSLL+AILGEIPKISGTV+
Sbjct: 600 KINAGKFSWEPESAILTLREVNLTVQRGHKIAICGPVGAGKSSLLHAILGEIPKISGTVD 659
Query: 656 LYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
++GSIAYVSQTSWIQSG+IRDNILYGKPMD +Y+KAIKACALDKDIN+FDHGD TEIG
Sbjct: 660 VFGSIAYVSQTSWIQSGTIRDNILYGKPMDTTKYEKAIKACALDKDINSFDHGDETEIGH 719
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
RGLN+SGGQKQR+QLARAVYNDADIYL DDPFSAVDAHTAA LFNECVMAAL KTVILV
Sbjct: 720 RGLNMSGGQKQRMQLARAVYNDADIYLLDDPFSAVDAHTAAILFNECVMAALAHKTVILV 779
Query: 776 THQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQG 835
THQVEFLSEVD+ILV+E GQITQSG+Y+ELL +GTAFEQLVNAH++A+T L N Q
Sbjct: 780 THQVEFLSEVDKILVMEAGQITQSGSYEELLTSGTAFEQLVNAHKNAVTVL-EFSNDEQV 838
Query: 836 GAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGL--TQLTEDEEMEIGDVGWKPFMDYL 893
+K+++ E+ +G KE+SEGEIS+KGL QLTE+EE EIGDVGWKPF+DYL
Sbjct: 839 EPQKLDQNLL---EKSHGSLFTKENSEGEISMKGLPGVQLTEEEETEIGDVGWKPFLDYL 895
Query: 894 NVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVY 953
VS GM L+ LG++ QSGF+ LQAA+TYWLA I+IP I++ +LIGVY +ST SAVFVY
Sbjct: 896 LVSNGMLLMSLGIITQSGFIALQAASTYWLALGIRIPNISNTLLIGVYTAISTLSAVFVY 955
Query: 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSI 1013
FRSF AA LGLKASKAFF+GFTNSIF APMLFFDSTPVGRILTR SSD S++DFDIPFSI
Sbjct: 956 FRSFCAARLGLKASKAFFAGFTNSIFNAPMLFFDSTPVGRILTRASSDFSVVDFDIPFSI 1015
Query: 1014 VFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPV 1073
+FV A+G EL+ IGIM VTWQVL VAIFAMV +VQ YY+A+ARELIRINGTTKAPV
Sbjct: 1016 IFVVAAGLELITTIGIMASVTWQVLFVAIFAMVTANYVQGYYLASARELIRINGTTKAPV 1075
Query: 1074 MNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL 1133
MNY AETS GVVTIRAF MVDRFFQNYL+L+D DA LFF++N +EWL+LR+E LQNLTL
Sbjct: 1076 MNYAAETSLGVVTIRAFKMVDRFFQNYLELIDTDAKLFFYSNAAIEWLVLRIEMLQNLTL 1135
Query: 1134 FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI 1193
TAAL LVL+P+G V PGLVGLSLSYA LTG+QVFLSRWYC L+NYI+SVERIKQFM I
Sbjct: 1136 VTAALLLVLLPKGVVVPGLVGLSLSYALALTGSQVFLSRWYCNLSNYIVSVERIKQFMRI 1195
Query: 1194 PPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTG 1253
PPEPPAIVE KRPPSSWP KGRIEL+ LKI+YRPNAPLVLKGITCTF EGTRVGVVGRTG
Sbjct: 1196 PPEPPAIVEGKRPPSSWPSKGRIELQNLKIKYRPNAPLVLKGITCTFKEGTRVGVVGRTG 1255
Query: 1254 SGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDP 1313
SGKTTLISALFRLVEP G ILIDG+DICS+GLKDLR+KLSIIPQE TLF+GS+RTNLDP
Sbjct: 1256 SGKTTLISALFRLVEPESGKILIDGLDICSIGLKDLRMKLSIIPQEATLFKGSIRTNLDP 1315
Query: 1314 LGLYSDDEIWK 1324
LGLYSD+EIW+
Sbjct: 1316 LGLYSDNEIWE 1326
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482528|ref|XP_002276236.2| PREDICTED: ABC transporter C family member 8-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1896 bits (4911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 934/1331 (70%), Positives = 1100/1331 (82%), Gaps = 19/1331 (1%)
Query: 1 MAFLGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRI 60
MA + LGG SW D+G FC+Q+TI+DV+NL+F VF + L++GS RKN +
Sbjct: 1 MASWDSSLGGFSWNSGEGLDMGFFCVQTTILDVLNLLFLSVFCVILVMGSVRKNVIFEHS 60
Query: 61 RRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVK 118
RR+ VS VS CCAVV I YL LW+L KN+ S +SW VRGL+W+SLA SLL++
Sbjct: 61 RRDWVSGGVSICCAVVSIGYLSAGLWDLFVKNEGSGHLSWWAYFVRGLVWISLAASLLIQ 120
Query: 119 RSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFT 178
R K IR+L +LWW++F LL ALNIEIL +T+ I V ++P V+ LLLF AFRN H
Sbjct: 121 RPKCIRILSSLWWLAFFLLGSALNIEILVKTHNIQVFDMVPWLVSFLLLFCAFRNICHHD 180
Query: 179 SPNREDKSLSEPLLA---EKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLV 235
SP+ D+S+SEPLL EK+ ELGK+ + KLTFSWINPLL LGYSKPL LEDIPSLV
Sbjct: 181 SPDTPDRSVSEPLLGKKPEKSSVELGKSSFISKLTFSWINPLLCLGYSKPLVLEDIPSLV 240
Query: 236 PEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVV 295
ED A AYQKFA+AW+ L +E NN+ NLV + + VY KE + I AL +TI+VVV
Sbjct: 241 SEDGAELAYQKFAHAWEQLQKEKTPNNSCNLVLQALARVYWKETLSAGIFALFKTISVVV 300
Query: 296 GPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355
PLLLYAFV YSN EN EG+ +VGCL++ K+VES +QRH F SRRSGMRMRS+LMV
Sbjct: 301 SPLLLYAFVKYSNHSGENWHEGVFLVGCLVLNKLVESLSQRHWFLNSRRSGMRMRSSLMV 360
Query: 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGV 415
AVYQKQLKLSSLGR +HSTGEIVNYIA+DAYRMGEFP+WFH WS LQLFL+IGVLFG+
Sbjct: 361 AVYQKQLKLSSLGRGRHSTGEIVNYIAIDAYRMGEFPWWFHTMWSFILQLFLSIGVLFGI 420
Query: 416 VGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWE 475
VGLGAL GLV LICGLLNVPFAKI+Q+CQ +FM+AQD+RLRSTSEILN+MK+IKLQSWE
Sbjct: 421 VGLGALTGLVPLLICGLLNVPFAKIIQRCQFQFMMAQDQRLRSTSEILNSMKVIKLQSWE 480
Query: 476 EKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTI 535
EKFK+LIES R+ EFKWL+EA +K Y TV+YW+SP+II SVIFLGC + SAPL+ASTI
Sbjct: 481 EKFKNLIESLRDIEFKWLAEAHYKKCYCTVLYWLSPSIIPSVIFLGCVVFRSAPLDASTI 540
Query: 536 FTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSV 595
FTVLA LR M EPVR IPEALS +IQ+KVSFDR+NAFLLD E+ ++++R++ + S SV
Sbjct: 541 FTVLAALRCMSEPVRTIPEALSALIQIKVSFDRLNAFLLDDEVKSEEIRKVVVPNSHYSV 600
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655
+ FSWDP+ I TLR VN+++KW QK+AVCG VGAGKSSLLYAILGEIPK+SGTV+
Sbjct: 601 IVNGCGFSWDPKSTILTLRDVNMEVKWGQKVAVCGPVGAGKSSLLYAILGEIPKVSGTVD 660
Query: 656 LYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
++GSIAYVSQTSWIQSG+IRDNILYG+PMDK +Y+KAIKACALDKDIN+FDHGDLTEIGQ
Sbjct: 661 VFGSIAYVSQTSWIQSGTIRDNILYGRPMDKTKYEKAIKACALDKDINSFDHGDLTEIGQ 720
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
RGLN+SGGQKQRIQLARAVYNDA+IYL DDPFSAVDAHTAA LFN+C+M+AL +KTVILV
Sbjct: 721 RGLNMSGGQKQRIQLARAVYNDANIYLLDDPFSAVDAHTAAVLFNDCIMSALAQKTVILV 780
Query: 776 THQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQG 835
THQVEFLS VD+ILV+EGGQITQSG+Y+EL AGTAFEQLVNAH++A T + + Q
Sbjct: 781 THQVEFLSAVDKILVMEGGQITQSGSYEELFAAGTAFEQLVNAHKNATTVMNLSNKEIQE 840
Query: 836 GAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGL--TQLTEDEEMEIGDVGWKPFMDYL 893
K+++ P KES EGEIS+KGL QLTE+EE EIGDVGWKPF+DYL
Sbjct: 841 EPHKLDQS------------PTKESGEGEISMKGLQGVQLTEEEEREIGDVGWKPFLDYL 888
Query: 894 NVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVY 953
VSKG LL L ++ +SGF+ LQAA+TYWLA AI++PKI++G+LIGVYAG+ST S F+Y
Sbjct: 889 LVSKGSFLLFLCIITKSGFIALQAASTYWLALAIEMPKISNGMLIGVYAGLSTLSTGFIY 948
Query: 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSI 1013
RSFF A LGLKASKAFF+GFTNSIFKAPMLFFDSTPVGRILTR SSDLS+LDFDIPFSI
Sbjct: 949 LRSFFGARLGLKASKAFFAGFTNSIFKAPMLFFDSTPVGRILTRASSDLSVLDFDIPFSI 1008
Query: 1014 VFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPV 1073
+FV ASG ELL+IIG+ +TW VL+VAIFA+VAV +VQ YY+A+ARELIRINGTTKAPV
Sbjct: 1009 IFVVASGLELLSIIGVTASITWPVLIVAIFAIVAVYYVQGYYLASARELIRINGTTKAPV 1068
Query: 1074 MNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL 1133
M+Y AETS GVVTIRAFNMVDRFFQNYL+L++ DA LFF++N +EWL+LR+E LQNLTL
Sbjct: 1069 MSYAAETSLGVVTIRAFNMVDRFFQNYLELIETDAKLFFYSNAAIEWLVLRIEILQNLTL 1128
Query: 1134 FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI 1193
TAAL LVL+P+GYVAPGLVGLSLSYA LTGTQVF SRWYC L+NY++SVERIKQFMHI
Sbjct: 1129 VTAALLLVLLPKGYVAPGLVGLSLSYALALTGTQVFFSRWYCNLSNYVVSVERIKQFMHI 1188
Query: 1194 PPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTG 1253
P EPPAIVE+KRPP+SWP KGRI+L+ LKI+YRPNAPLVLKGITCTF EGTRVG+VGRTG
Sbjct: 1189 PSEPPAIVEEKRPPTSWPSKGRIDLQYLKIKYRPNAPLVLKGITCTFKEGTRVGIVGRTG 1248
Query: 1254 SGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDP 1313
SGKTTLISALFRLVEP G I IDG+DICS+GLKDLR+KLSIIPQEPTLF+GS+RTNLDP
Sbjct: 1249 SGKTTLISALFRLVEPESGKIFIDGLDICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDP 1308
Query: 1314 LGLYSDDEIWK 1324
LGLYSDDEIW+
Sbjct: 1309 LGLYSDDEIWE 1319
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482524|ref|XP_002276193.2| PREDICTED: ABC transporter C family member 8-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1878 bits (4864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 941/1331 (70%), Positives = 1104/1331 (82%), Gaps = 11/1331 (0%)
Query: 1 MAFLGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRI 60
MA L LGG SW C E DLGSFCIQ TI+DV+NL+F VF + L++G RK+ G
Sbjct: 1 MASLEISLGGFSWVCGEELDLGSFCIQRTILDVLNLLFLSVFSVILVIGYIRKHEISGCS 60
Query: 61 RRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVK 118
RR+ VS VS CCA+ GIAY+ W+L+ +N S + WLV VRGL W+SLA+SLLV+
Sbjct: 61 RRDWVSGGVSICCALTGIAYVSAGFWDLVVRNGGSQPLGWLVYFVRGLTWISLAVSLLVR 120
Query: 119 RSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFT 178
SKW R+L LWW++F LV LNIEIL +T+ I + I+P VN LL+F AFRN H
Sbjct: 121 SSKWSRILSFLWWLTFFSLVSTLNIEILVKTHNIKIFDIVPWLVNSLLIFCAFRNIFHSV 180
Query: 179 SPNRE-DKSLSEPLLAEK--NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLV 235
S + DKS SEPLLA+K +TE+GK + KLTFSWINP+L LG SKPL LED+P L
Sbjct: 181 SEDTTPDKSESEPLLAKKPVRRTEVGKISFITKLTFSWINPILCLGNSKPLVLEDVPPLA 240
Query: 236 PEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVV 295
EDEA AYQKF+ AW+ L RE +S++ NLV + + VYLKE IF+ +CALLRTI+VVV
Sbjct: 241 SEDEAELAYQKFSQAWECLQRERSSSSTDNLVFRALAIVYLKEMIFVGLCALLRTISVVV 300
Query: 296 GPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355
PLLLYAFV YS R EEN QEG+ ++GCLII+KVVES +QRH F +RR GMRMRSALMV
Sbjct: 301 SPLLLYAFVKYSTRDEENWQEGVFLMGCLIISKVVESVSQRHWFLNARRFGMRMRSALMV 360
Query: 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGV 415
AVYQKQLKLSSLGR++HS+G+IVNYIAVDAY GEFP+WFH WS LQLFL+IGVLFGV
Sbjct: 361 AVYQKQLKLSSLGRRRHSSGQIVNYIAVDAYTTGEFPWWFHSAWSYILQLFLSIGVLFGV 420
Query: 416 VGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWE 475
VG+GAL GL L+CGLLNVPFAKILQKCQS+ M+A+D+RLRSTSEILN+MK+IKLQSWE
Sbjct: 421 VGVGALSGLAPLLVCGLLNVPFAKILQKCQSQLMMARDQRLRSTSEILNSMKVIKLQSWE 480
Query: 476 EKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTI 535
+KFK+ IES R+ EFKWL+EAQ +K Y TV+YWMSPTI+SSV FLGCAL GSAPLNASTI
Sbjct: 481 DKFKNFIESLRDVEFKWLAEAQYKKCYNTVLYWMSPTIVSSVTFLGCALFGSAPLNASTI 540
Query: 536 FTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSV 595
FT++A LR MGEPVRMIPEA+S+MIQ K+SF+R+NAF LD EL ++++RR++L SD SV
Sbjct: 541 FTIVAALRCMGEPVRMIPEAISVMIQAKISFERLNAFFLDDELKSEEMRRVTLPNSDHSV 600
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655
I GNFSW+PE A+ TLR +NL +K Q +AVCG VGAGKSS L+AILGEIPKISG+V+
Sbjct: 601 VINGGNFSWEPESAVLTLRDINLGVKRGQILAVCGPVGAGKSSFLFAILGEIPKISGSVD 660
Query: 656 LYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
++GSIAYVSQTSWIQSG+IRDNIL GKPMD +Y+KAIKACALDKDIN+FDHGD TEIGQ
Sbjct: 661 VFGSIAYVSQTSWIQSGTIRDNILCGKPMDTTKYEKAIKACALDKDINSFDHGDETEIGQ 720
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
RGLN+SGGQKQRIQLARA+YNDA+IYL DDPFSAVDAHTAA LFN+CVMAAL KTV+LV
Sbjct: 721 RGLNMSGGQKQRIQLARALYNDAEIYLLDDPFSAVDAHTAAILFNDCVMAALRHKTVMLV 780
Query: 776 THQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQG 835
THQVEFLS+V++ILVLEGG+ITQSG+Y+ELL GTAFEQLVNAH++AIT L +N G
Sbjct: 781 THQVEFLSQVEKILVLEGGRITQSGSYEELLTTGTAFEQLVNAHKNAITVLDLSNNEG-- 838
Query: 836 GAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLT--QLTEDEEMEIGDVGWKPFMDYL 893
E+ +K PE +G P KE SEGEIS+KGL QLTE+E MEIGDVGWK F DYL
Sbjct: 839 --EETQKLDHILPEVSHGSCPTKERSEGEISMKGLRGGQLTEEEGMEIGDVGWKAFWDYL 896
Query: 894 NVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVY 953
VSKG L+ G++AQ GFV LQAA+TYWLA I+IPKI++G+LIGVYAG+ST SAVFVY
Sbjct: 897 LVSKGALLMFSGMIAQCGFVALQAASTYWLALGIEIPKISNGMLIGVYAGISTLSAVFVY 956
Query: 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSI 1013
RSF A LGLKASKAFF+GFT+SIF APM FFDSTPVGRILTR SSDL++LD +IPFSI
Sbjct: 957 LRSFLIARLGLKASKAFFAGFTSSIFNAPMHFFDSTPVGRILTRASSDLTVLDSNIPFSI 1016
Query: 1014 VFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPV 1073
+FV ++G ++L IGIM VTW VL+VAIFAMVA ++VQ YY+A+ARELIRINGTTKAPV
Sbjct: 1017 IFVLSAGIDILTTIGIMASVTWPVLIVAIFAMVAAKYVQGYYLASARELIRINGTTKAPV 1076
Query: 1074 MNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL 1133
MNY AE+S GVVTIRAFNMVDRFFQNYLKL+D DA LFF++N MEWL+LR+EALQNLTL
Sbjct: 1077 MNYAAESSLGVVTIRAFNMVDRFFQNYLKLIDTDAKLFFYSNAAMEWLVLRIEALQNLTL 1136
Query: 1134 FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI 1193
TAAL LVL+P+GYVAPGLVGLSLSYA LTGTQV LSRWYC L+NY++SVERIKQFMHI
Sbjct: 1137 VTAALLLVLLPKGYVAPGLVGLSLSYALALTGTQVMLSRWYCNLSNYMVSVERIKQFMHI 1196
Query: 1194 PPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTG 1253
P EPPAIV+ KRPPSSWP KGRIEL+ LKI+YRPN+PLVLKGITC F EGTRVGVVGRTG
Sbjct: 1197 PSEPPAIVDGKRPPSSWPSKGRIELQNLKIKYRPNSPLVLKGITCIFKEGTRVGVVGRTG 1256
Query: 1254 SGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDP 1313
SGKTTLISALFRLVEP G+IL+DG+DICS+GLKDLR+KLSIIPQEPTLF+GS+RTNLDP
Sbjct: 1257 SGKTTLISALFRLVEPESGTILVDGLDICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDP 1316
Query: 1314 LGLYSDDEIWK 1324
LGLYS++EIWK
Sbjct: 1317 LGLYSENEIWK 1327
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358349246|ref|XP_003638650.1| Multidrug resistance protein ABC transporter family [Medicago truncatula] gi|355504585|gb|AES85788.1| Multidrug resistance protein ABC transporter family [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1829 bits (4738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 904/1330 (67%), Positives = 1075/1330 (80%), Gaps = 23/1330 (1%)
Query: 1 MAFLGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRI 60
MA+ +G +SW C FD S C Q ++ID IN++F CV+ SL++ RK+ G
Sbjct: 1 MAYFDNTIGEISWICLKNFDFNSLCSQRSLIDTINILFVCVYCTSLIITLIRKSSTNGSH 60
Query: 61 RRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSSMSWLVSTVRGLIWVSLAISLLVKRS 120
+ + I+VS CC + IA+ LW+ IAK D+S L ++GLIW+SL++SL+V+R
Sbjct: 61 GKCWIFIIVSICCGTISIAFFSIGLWDFIAKTDNSEK-LSCIIKGLIWISLSVSLIVQRV 119
Query: 121 KWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSP 180
KWIR+LI++WW +LV +LNIEIL R + I I+ V+ LLL+ AF+N + +
Sbjct: 120 KWIRILISIWWTFSCVLVSSLNIEILLRNHAIETFDIVQWLVHFLLLYCAFKNLDYIGTH 179
Query: 181 NREDKSLSEPLLAEKN---QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPE 237
+ ++ L+EPLLA KN QT LG+A L KL FSWIN LLSLGYSKPL LEDIPS+V E
Sbjct: 180 SVQE-GLTEPLLAGKNETKQTGLGRATFLSKLNFSWINSLLSLGYSKPLDLEDIPSVVSE 238
Query: 238 DEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGP 297
DEA +YQKF AW+SLVRE NN +LV I +LKENI IA AL+RT++V V P
Sbjct: 239 DEADMSYQKFVNAWESLVRERTKNNTKSLVLWSIVRTFLKENILIAFYALIRTVSVAVSP 298
Query: 298 LLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAV 357
L+LYAFVNYSNR E +L++GLSIVG LI+TKV ES +QRH FF SRRSGM+MRSALMVAV
Sbjct: 299 LILYAFVNYSNRTEADLKQGLSIVGILILTKVFESLSQRHWFFNSRRSGMKMRSALMVAV 358
Query: 358 YQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVG 417
Y+KQLKLSS R++HS GEIVNYIAVDAYRMGEFP+WFH TW+ A QL L+I VLFGVVG
Sbjct: 359 YRKQLKLSSSARQRHSAGEIVNYIAVDAYRMGEFPWWFHTTWTCAFQLILSISVLFGVVG 418
Query: 418 LGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK 477
+GALPGLV LICGLLNVPFA+ILQ CQS+FMIAQDERLRSTSE+LN+MKIIKLQSWEEK
Sbjct: 419 VGALPGLVPLLICGLLNVPFARILQNCQSQFMIAQDERLRSTSEVLNSMKIIKLQSWEEK 478
Query: 478 FKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFT 537
FK+L+E R+KEF WLS+AQ+ KA + +YWMSPT++S+V+F+GCA+T SAPLNA TIFT
Sbjct: 479 FKNLVELLRDKEFVWLSKAQILKATNSFLYWMSPTVVSAVVFVGCAVTKSAPLNAETIFT 538
Query: 538 VLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKI 597
VLATLR+MGEPVRMIPEALSI+IQVKVSFDR+ FLLD ELNNDD R Q S +V+I
Sbjct: 539 VLATLRNMGEPVRMIPEALSILIQVKVSFDRLTNFLLDEELNNDDSERNIQQLSVNAVEI 598
Query: 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY 657
Q+GNF+WD E PTL+ VNL+IKW QKIAVCG VGAGKSSLLYAILGEIPKI GTVN+
Sbjct: 599 QDGNFNWDHESMSPTLKDVNLEIKWRQKIAVCGPVGAGKSSLLYAILGEIPKIQGTVNVG 658
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
G++AYVSQ+SWIQSG++++NIL+GKPMDK RY+KAIKACALDKDIN+F HGDLTEIGQRG
Sbjct: 659 GTLAYVSQSSWIQSGTVQENILFGKPMDKRRYEKAIKACALDKDINDFSHGDLTEIGQRG 718
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
+N+SGGQKQRIQLARAVYNDADIYL DDPFSAVDAHTAA LFN+CVM AL +KTVILVTH
Sbjct: 719 INMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTH 778
Query: 778 QVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGA 837
QVEFLSEVD ILV+EGG++ QSG+Y+ LL AGTAFEQLV AH+D IT L N Q
Sbjct: 779 QVEFLSEVDTILVMEGGKVIQSGSYENLLTAGTAFEQLVRAHKDTITEL----NQDQENK 834
Query: 838 EKVEKGRTARPEEPNGIYPRKESSEGEI-SVKGL--TQLTEDEEMEIGDVGWKPFMDYLN 894
E E A K SEGEI S+KG QLT++EE IG+VGWKPF DY+N
Sbjct: 835 EGSENEVLA-----------KHQSEGEISSIKGPIGAQLTQEEEKVIGNVGWKPFWDYIN 883
Query: 895 VSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYF 954
SKG +LC+ +L+QSGF+ LQ ++TYWLA AI+IPK+T+ LIGVYA +S +SA FVY
Sbjct: 884 YSKGTFMLCMIMLSQSGFMALQTSSTYWLAIAIEIPKVTNAALIGVYALISFSSAAFVYV 943
Query: 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIV 1014
RS+ A LGLKAS FFS FT +IF APMLFFDSTPVGRILTR SSDLSILDFDIP+SI
Sbjct: 944 RSYLTALLGLKASTVFFSSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSIT 1003
Query: 1015 FVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVM 1074
FVA+ E+L II ++ VTWQVL+VA+ AMVA +VQ+YY ATA ELIRINGTTKAPVM
Sbjct: 1004 FVASIAIEVLVIICVVASVTWQVLIVAVPAMVASIYVQQYYQATASELIRINGTTKAPVM 1063
Query: 1075 NYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLF 1134
N+ AETS GVVT+R+FNMVDRFF+NYLKLVD DASLFFH+NG MEW++LR+EALQNLT+
Sbjct: 1064 NFAAETSLGVVTVRSFNMVDRFFKNYLKLVDTDASLFFHSNGAMEWVVLRIEALQNLTVI 1123
Query: 1135 TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIP 1194
TAAL L+L+P+GYV+PGLVGLSLSYAFTLTG Q+F SRW+ L+N+IISVERI QF+HIP
Sbjct: 1124 TAALLLILLPQGYVSPGLVGLSLSYAFTLTGAQIFWSRWFSNLSNHIISVERINQFIHIP 1183
Query: 1195 PEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGS 1254
EPPAIV++ RPPSSWP KG+I+L+ L+IRYRPN+PLVLKGI CTF EG+RVGVVGRTGS
Sbjct: 1184 AEPPAIVDNNRPPSSWPSKGKIDLQGLEIRYRPNSPLVLKGIICTFKEGSRVGVVGRTGS 1243
Query: 1255 GKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL 1314
GK+TLISALFRLVEP+ G ILIDGV+ICS+GLKDLR KLSIIPQEPTLF+GS+RTNLDPL
Sbjct: 1244 GKSTLISALFRLVEPSRGDILIDGVNICSIGLKDLRTKLSIIPQEPTLFKGSIRTNLDPL 1303
Query: 1315 GLYSDDEIWK 1324
GLYSDDEIWK
Sbjct: 1304 GLYSDDEIWK 1313
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528857|ref|XP_003533014.1| PREDICTED: ABC transporter C family member 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1815 bits (4702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 900/1323 (68%), Positives = 1059/1323 (80%), Gaps = 14/1323 (1%)
Query: 10 GLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRRECVSIVV 69
SW C GEF L SF Q IID+IN+ F VFY SLL +K+ R+ + +V
Sbjct: 14 NFSWICLGEFSLTSFSTQRCIIDIINIFFMGVFYASLLSNLIKKSPASSSYRKGWIHVVA 73
Query: 70 SACCAVVGIAYLGYCLWNLIAKNDS---SMSWLVSTVRGLIWVSLAISLLVKRSKWIRML 126
S CC ++ IAY LWNLIAK + ++ LV +RGL+W+SLA+SL V+RS+WI++
Sbjct: 74 SVCCTLLSIAYFIDGLWNLIAKKTTGFNQLNLLVCIIRGLVWISLAVSLFVQRSQWIKIS 133
Query: 127 ITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPNREDKS 186
++WWM+ LV A N+EIL + +T + Y+ PV++L +F AF+N F D S
Sbjct: 134 CSIWWMTSCTLVSAFNVEILVKEHTFEIFYMAIWPVHILTIFCAFQNHGFFVPQETPDAS 193
Query: 187 LSEPLLAEKN---QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFA 243
L EPLL K+ QTELG A + +FSW+N LLSLGYSKPLALEDIPSL ED+A FA
Sbjct: 194 LCEPLLVHKDMHKQTELGHASFCSRFSFSWMNALLSLGYSKPLALEDIPSLASEDKADFA 253
Query: 244 YQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAF 303
YQKF +AWDSL+RE NN+ NLV I VYL ENIFIAICA LRTI VV PLL+YAF
Sbjct: 254 YQKFVHAWDSLLRERGRNNSRNLVLWSIARVYLNENIFIAICAFLRTICAVVSPLLVYAF 313
Query: 304 VNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLK 363
VNYS+ EE L++G++IVGCLI KVVES +QRH F SRR GM+MRSALM AVYQKQLK
Sbjct: 314 VNYSSSIEEELKQGIAIVGCLIFAKVVESVSQRHWSFNSRRLGMKMRSALMAAVYQKQLK 373
Query: 364 LSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPG 423
LS+LGR++HSTGEIVNYIAVDAYRMGEFP+WFH ALQ+FLA+GVLFGVVGLGALPG
Sbjct: 374 LSALGRRRHSTGEIVNYIAVDAYRMGEFPWWFHTLMFSALQVFLALGVLFGVVGLGALPG 433
Query: 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIE 483
LV +ICG LNVPFAKILQKC+SEFMIAQDERLRSTSEIL++MKIIKLQSWE+ FK +E
Sbjct: 434 LVPLIICGFLNVPFAKILQKCRSEFMIAQDERLRSTSEILSSMKIIKLQSWEDNFKKFVE 493
Query: 484 SRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLR 543
S R KEFK L+EAQ +AYGT IYWMSP IISSVIF+GCAL S+PLNA+TIF+VLA LR
Sbjct: 494 SLRAKEFKCLAEAQFMRAYGTFIYWMSPAIISSVIFVGCALFQSSPLNAATIFSVLAALR 553
Query: 544 SMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKS-DRSVKIQEGNF 602
SMGEPV +IPEALS++IQVKVSFDRIN FLLD E+ +DD+RR S Q S +SV+I GNF
Sbjct: 554 SMGEPVTLIPEALSVLIQVKVSFDRINTFLLDDEIKSDDIRRTSKQDSCSKSVEILAGNF 613
Query: 603 SWDPELAIP-TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA 661
SWD + ++P TLR VN +IKW Q +AVCG VGAGK+SLLYAILGEIPKISG V++ G++A
Sbjct: 614 SWDQQQSVPPTLRKVNFEIKWGQTVAVCGPVGAGKTSLLYAILGEIPKISGIVSVCGTLA 673
Query: 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721
YVSQT WIQSG+IRDNILYGKPMD+ RY IK CALDKDI+ F HGDLTEIGQRG+N+S
Sbjct: 674 YVSQTPWIQSGTIRDNILYGKPMDETRYGYTIKVCALDKDIDGFRHGDLTEIGQRGINMS 733
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781
GGQKQRIQLARAVYNDADIYL DDPFSAVDAHTA+ LFN+CV AL +KTVILVTHQVEF
Sbjct: 734 GGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTASILFNDCVRVALRRKTVILVTHQVEF 793
Query: 782 LSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVE 841
LS+VD+ILV+E G+ITQ GNY++LL AGTAFEQL++AHR+AITG+ +VE
Sbjct: 794 LSKVDKILVMERGKITQLGNYEDLLTAGTAFEQLLSAHREAITGI----EKSSAYKREVE 849
Query: 842 KGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSL 901
+ E+ + K S+G+IS K QLT++EE E GDVGWKPF DY+ KG L
Sbjct: 850 NLVAVQLEDSHVCNLTKGGSDGDISTK--IQLTQEEEKESGDVGWKPFCDYIFFPKGSLL 907
Query: 902 LCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAH 961
LCL +LAQ FVG QAA+TYWLA AI++ K+TS ILIGVY+ +S S VFVY RS+FAAH
Sbjct: 908 LCLSILAQFAFVGFQAASTYWLALAIEMQKVTSSILIGVYSVISFLSIVFVYLRSYFAAH 967
Query: 962 LGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGT 1021
LGLKASKAFFS FT++IF APMLFFDSTP+GRILTR SSDLSILDFDIPF+ +FV +
Sbjct: 968 LGLKASKAFFSAFTDAIFNAPMLFFDSTPIGRILTRASSDLSILDFDIPFTTIFVTSEIA 1027
Query: 1022 ELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETS 1081
ELL +IGIM VTWQVL+VA+ AMVA ++VQ YY A+ARE+IRINGTTKAP+MN+TAETS
Sbjct: 1028 ELLTMIGIMVSVTWQVLIVAVLAMVASKYVQGYYQASAREIIRINGTTKAPLMNFTAETS 1087
Query: 1082 QGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV 1141
G VTIRAFNM DRFF+NYL LVD DA++FFH+N +EWLILR+E LQNLTLFTAAL LV
Sbjct: 1088 LGAVTIRAFNMTDRFFKNYLNLVDTDATMFFHSNAAIEWLILRIELLQNLTLFTAALLLV 1147
Query: 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIV 1201
L+P+GYVAPGLVGLSLSYAF+LT T V+L+R +C L+NY+ISVERIKQF+HIP EP AIV
Sbjct: 1148 LLPKGYVAPGLVGLSLSYAFSLTATVVYLTRMFCNLSNYVISVERIKQFIHIPAEPSAIV 1207
Query: 1202 EDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLIS 1261
ED RPP SWP KGRI+L+ L+IRYRPNAPLVLKGI+C F EG+RVGVVGRTGSGKTTLIS
Sbjct: 1208 EDNRPPPSWPSKGRIDLQSLEIRYRPNAPLVLKGISCRFEEGSRVGVVGRTGSGKTTLIS 1267
Query: 1262 ALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDE 1321
ALFRLVEP G ILIDG++ICS+GLKDLR KLSIIPQEPTLF+GS+R NLDPL LYSDDE
Sbjct: 1268 ALFRLVEPTRGDILIDGINICSIGLKDLRTKLSIIPQEPTLFKGSIRKNLDPLCLYSDDE 1327
Query: 1322 IWK 1324
IWK
Sbjct: 1328 IWK 1330
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357515353|ref|XP_003627965.1| ABC transporter C family member [Medicago truncatula] gi|355521987|gb|AET02441.1| ABC transporter C family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1798 bits (4657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 886/1332 (66%), Positives = 1071/1332 (80%), Gaps = 21/1332 (1%)
Query: 1 MAFLGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRI 60
MA +G +SWTC +FDL S C Q +++D IN++F CV+Y SLL+ RK+
Sbjct: 1 MANFWISIGEISWTCLKKFDLNSLCSQRSLVDTINILFLCVYYTSLLITLIRKSCTNESQ 60
Query: 61 RRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVK 118
R+ ++VS CCA++ IA+ + LWNLIAK D+S ++ +V ++G IW+S A+SL+V+
Sbjct: 61 RKCWNFLIVSICCALISIAFFSFGLWNLIAKTDNSEELNLVVCIIKGFIWISFAVSLIVQ 120
Query: 119 RSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFT 178
R K +R+L ++WW+S +LV +LNIEIL + + I I+ V LLL+ AF+N H
Sbjct: 121 RIKLVRILNSIWWLSSCILVSSLNIEILLKNHVIETFDIVQWLVYFLLLYCAFKNLGHIR 180
Query: 179 SPNREDKSLSEPLLAEKN---QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLV 235
NR + LSEPLLA+KN QTELG A L KL FSW+N LLSLGYSKPLALEDIPSLV
Sbjct: 181 D-NRVQECLSEPLLAQKNETAQTELGHATFLSKLIFSWVNSLLSLGYSKPLALEDIPSLV 239
Query: 236 PEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVV 295
EDEA+ AY+KF +AW+SLVRE NN +LV I YLKENI IA AL+RTIAVVV
Sbjct: 240 SEDEANMAYKKFVHAWESLVRERTKNNTKSLVLWSIVRSYLKENILIAFYALIRTIAVVV 299
Query: 296 GPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355
PL+LYAFVNYSNR EE+L++GLSIVG L++TKV ES +QRH FF SRRSGM+MRSALMV
Sbjct: 300 SPLILYAFVNYSNRTEEDLKQGLSIVGFLVVTKVFESVSQRHWFFNSRRSGMKMRSALMV 359
Query: 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGV 415
AVYQKQLKLSS RK+HS GEIVNYIAVD+YRMGEFP+WFH+TW+ ALQLFL+ VLF V
Sbjct: 360 AVYQKQLKLSSSARKRHSVGEIVNYIAVDSYRMGEFPWWFHITWTSALQLFLSTSVLFIV 419
Query: 416 VGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWE 475
VG+GALPGLV LICGL N+PFA+ILQ CQS+FMIAQDERLR+TSEILN+MKIIKLQSWE
Sbjct: 420 VGIGALPGLVPLLICGLFNIPFARILQNCQSQFMIAQDERLRTTSEILNSMKIIKLQSWE 479
Query: 476 EKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTI 535
EKFK+L+ES R+KEF WLS+AQ+ KA G+ +YW+SP ++S+V+FL C++T SAPLNA TI
Sbjct: 480 EKFKNLVESLRDKEFVWLSKAQILKASGSFLYWISPAMVSAVVFLACSVTKSAPLNAETI 539
Query: 536 FTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSV 595
FTVLATLR+MGEPVR IPEALS MIQ KVSFDR+N F LD +LNN++ + Q S ++
Sbjct: 540 FTVLATLRNMGEPVRTIPEALSNMIQAKVSFDRLNNFFLDEDLNNNESEKNLNQCSVNAL 599
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655
+IQ+GNF WD E P L+ VNL+IKW QKIAVCG VG+GKSSLLYAILGEIPKISGTV
Sbjct: 600 QIQDGNFIWDHESMSPALKDVNLEIKWRQKIAVCGPVGSGKSSLLYAILGEIPKISGTVY 659
Query: 656 LYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
+ G++AYVSQ+SWIQSG+++DNIL+GK MDK RY+KAIKACALDKDI++F HGDLTEIG+
Sbjct: 660 VGGTLAYVSQSSWIQSGTVQDNILFGKEMDKTRYEKAIKACALDKDIDDFSHGDLTEIGE 719
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
RG+N+SGGQKQRIQLARAVYNDADIYL DDPFSAVDAHTAA LFN+CVM AL KTVILV
Sbjct: 720 RGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALRDKTVILV 779
Query: 776 THQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQG 835
THQVEFLSEVD ILV+E G++ QSG+Y+ LL +GTAFE LV+AH+ I L
Sbjct: 780 THQVEFLSEVDTILVMEDGKVIQSGSYENLLKSGTAFELLVSAHKVTINDLNQ------- 832
Query: 836 GAEKVEKGRTARPEEPNGIYPRKESSEGEI-SVKGL--TQLTEDEEMEIGDVGWKPFMDY 892
+E + + P++ +G Y K SEGEI S++G QLT++EE IG+VGWKP DY
Sbjct: 833 NSEVL-----SNPQDSHGFYLTKNQSEGEISSIQGSIGAQLTQEEEKVIGNVGWKPLWDY 887
Query: 893 LNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFV 952
+N S G + CL +L Q F+ LQ ++ +WLA AI+IPK+T LIGVYA +S +S FV
Sbjct: 888 INYSNGTLMSCLVILGQCCFLALQTSSNFWLATAIEIPKVTDTTLIGVYALLSISSTSFV 947
Query: 953 YFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFS 1012
Y RS+FAA LGLKAS AFFS FT SIF APMLFFDSTPVGRILTR SSDLSILDFDIP+S
Sbjct: 948 YVRSYFAALLGLKASTAFFSSFTTSIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYS 1007
Query: 1013 IVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAP 1072
+ VA E+L +I ++ VTWQVL+VA+ AMVA+ F+Q+YY ATARELIRINGTTKAP
Sbjct: 1008 LTCVAIVAIEVLVMIFVIASVTWQVLIVAVPAMVALIFIQKYYQATARELIRINGTTKAP 1067
Query: 1073 VMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLT 1132
VMN+ AETS GVVT+RAFNMVDRFF+NYLKLVD DASLFFH+N MEWL+LR+EAL NLT
Sbjct: 1068 VMNFAAETSLGVVTVRAFNMVDRFFKNYLKLVDTDASLFFHSNVAMEWLVLRIEALLNLT 1127
Query: 1133 LFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH 1192
+ TAAL L+L+P+ Y++PG VGLSLSYA TL G Q+F +RW+ L+NYIISVERIKQF+H
Sbjct: 1128 VITAALLLILLPQRYLSPGRVGLSLSYALTLNGAQIFWTRWFSNLSNYIISVERIKQFIH 1187
Query: 1193 IPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRT 1252
IP EPPAIV++ RPPSSWP KG+I+L+ L++RYRPNAPLVLKGITCTF G+RVGVVGRT
Sbjct: 1188 IPAEPPAIVDNNRPPSSWPSKGKIDLQGLEVRYRPNAPLVLKGITCTFKGGSRVGVVGRT 1247
Query: 1253 GSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD 1312
GSGK+TLISALFRLVEP+ G ILIDG++ICSMGLKDLR+KLSIIPQEPTLF+GS+RTNLD
Sbjct: 1248 GSGKSTLISALFRLVEPSRGDILIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLD 1307
Query: 1313 PLGLYSDDEIWK 1324
PLGLYSDDEIWK
Sbjct: 1308 PLGLYSDDEIWK 1319
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522202|ref|XP_003529736.1| PREDICTED: ABC transporter C family member 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1793 bits (4645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 888/1325 (67%), Positives = 1066/1325 (80%), Gaps = 24/1325 (1%)
Query: 11 LSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRRECVSIVVS 70
SWTC +F+ SFC Q T ID INL+F C FY S+++ R+ R + +V S
Sbjct: 495 FSWTCLKDFEFTSFCSQRTTIDTINLLFVCFFYTSMIISIIRRCSISCSFRTKWTFLVAS 554
Query: 71 ACCAVVGIAYLGYCLWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVKRSKWIRMLIT 128
CCA++ IA+ LW LI K D++ +SW+ VRG +W SLA+SLLV+R KWI++L
Sbjct: 555 ICCAIISIAFYSIGLWILIVKTDNTKQLSWVACVVRGFVWTSLAVSLLVQREKWIKILNC 614
Query: 129 LWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPNREDKSLS 188
WW +LV +L IEIL R + I + I+ + LLLF AF+N ++ S + + SLS
Sbjct: 615 AWWTCSCVLVSSLIIEILLRKHAIEIFDIVQWLTHFLLLFCAFQNLCYYVSQSLPE-SLS 673
Query: 189 EPLLAEK---NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQ 245
EPLLA++ QTELG + L KLTFSW+N LL LGYSKPLALEDIPSL+ EDEA FAYQ
Sbjct: 674 EPLLAQEVDTKQTELGHSTFLSKLTFSWVNSLLRLGYSKPLALEDIPSLLSEDEAEFAYQ 733
Query: 246 KFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVN 305
F + W+SLVRE++ +N NLV + +LKENI IA ALLRTIAV V PL+LYAFVN
Sbjct: 734 NFMHTWESLVRESSKDNTKNLVLWSVVRTHLKENILIAFYALLRTIAVTVSPLILYAFVN 793
Query: 306 YSNR---GEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQL 362
YSN + NL+EGLSIVG LI+++VV+S +QRH FF SRRSG+++RSALMVAVY+KQL
Sbjct: 794 YSNSRDAKQTNLKEGLSIVGFLILSRVVDSVSQRHWFFDSRRSGLKIRSALMVAVYKKQL 853
Query: 363 KLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALP 422
KLSS R++HSTGEIVNYIAVD YRMGEFP+WFH++W+ A+QL L++GVLFGVVG+GALP
Sbjct: 854 KLSSSARRRHSTGEIVNYIAVDTYRMGEFPWWFHISWTSAVQLVLSVGVLFGVVGVGALP 913
Query: 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI 482
GLV +ICGL+NVPFAKILQ C ++FMI+QDERLRSTSEILN+MKIIKLQSWE+KFK+L+
Sbjct: 914 GLVPLVICGLINVPFAKILQHCMAQFMISQDERLRSTSEILNSMKIIKLQSWEDKFKNLV 973
Query: 483 ESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATL 542
E+ R KEF WLS++Q+ K+YGT +YWMSPTI+S+V+FLGCAL SAPLNA TIFTV ATL
Sbjct: 974 ENLRAKEFIWLSKSQMMKSYGTFLYWMSPTIVSAVVFLGCALFNSAPLNAGTIFTVFATL 1033
Query: 543 RSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL-QKSDRSVKIQEGN 601
R++ EPVRMIPEALS+MIQVKVSFDR+N LLD EL++ + R ++ Q S +V+IQ GN
Sbjct: 1034 RNLSEPVRMIPEALSMMIQVKVSFDRLNTVLLDEELDSSNANRRNINQSSVNAVEIQAGN 1093
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA 661
F WD E PTLR VNL I+ QKIAVCG VGAGKSSLL+A+LGE PKISGTVN+ G++A
Sbjct: 1094 FIWDHESVFPTLRDVNLQIEQGQKIAVCGPVGAGKSSLLFAVLGEFPKISGTVNVSGTVA 1153
Query: 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721
YVSQTSWIQSG++RDNIL+GKPMDK RYD AIK CALDKDIN+F HGDLTEIGQRG+N+S
Sbjct: 1154 YVSQTSWIQSGTVRDNILFGKPMDKTRYDDAIKVCALDKDINDFSHGDLTEIGQRGINMS 1213
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781
GGQKQRIQLARAVYNDADIYL DDPFSAVDAHTAA LFN+CVM AL +KTVILVTHQVEF
Sbjct: 1214 GGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMMALREKTVILVTHQVEF 1273
Query: 782 LSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVE 841
LS+VD ILV+EGG++TQ+GNY LL +GTAFEQLV+AH++AI+ L E+
Sbjct: 1274 LSQVDTILVMEGGKVTQAGNYVNLLTSGTAFEQLVSAHKEAISEL-----------EQNN 1322
Query: 842 KGRTARPEEPNGIYPRKESSEGEISVKGL--TQLTEDEEMEIGDVGWKPFMDYLNVSKGM 899
+ +T EE G Y K SEGEIS KG QLT++EE EIGDVGWK DY++ S+
Sbjct: 1323 ENKT-HTEESQGFYLTKNQSEGEISYKGQLGVQLTQEEEKEIGDVGWKTIWDYISFSRCS 1381
Query: 900 SLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFA 959
+LC +L Q FV LQAA+T+WL AI+IPK++S LIGVY+ +S VF + R+
Sbjct: 1382 MMLCWIILGQFAFVVLQAASTFWLVQAIEIPKLSSVTLIGVYSLISFGGTVFAFLRTSIG 1441
Query: 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAAS 1019
AHLGLKAS AFFS FT SIF APMLFFDSTPVGRILTR SSDL+ILDFDIPFSI FVA+
Sbjct: 1442 AHLGLKASTAFFSSFTTSIFNAPMLFFDSTPVGRILTRASSDLTILDFDIPFSITFVASV 1501
Query: 1020 GTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAE 1079
E+L IIGIM +VTWQVL+VA+ AMVA ++VQ YY A+ARELIRINGTTKAPVMN+ AE
Sbjct: 1502 PIEILMIIGIMVYVTWQVLIVAVPAMVASKYVQGYYQASARELIRINGTTKAPVMNFAAE 1561
Query: 1080 TSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF 1139
TS G+VT+RAFNM DRFF+NYLKLVD DA+LFF++N MEWL+LR+E LQNLT+ TAAL
Sbjct: 1562 TSLGLVTVRAFNMADRFFKNYLKLVDTDAALFFYSNAAMEWLVLRIETLQNLTVITAALL 1621
Query: 1140 LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199
LVL+P+GYV+PGLVGLSLSY FTLTGTQ+FL+RWYC L NYIISVERIKQF+ +P EPPA
Sbjct: 1622 LVLVPQGYVSPGLVGLSLSYTFTLTGTQIFLTRWYCNLLNYIISVERIKQFIQLPEEPPA 1681
Query: 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259
IVED RPPSSWP KGRI+L+ L+IRYRPNAPLVLKGITCTF EG+RVGVVGRTGSGK+TL
Sbjct: 1682 IVEDNRPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTL 1741
Query: 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSD 1319
ISALFRLVEPA G ILIDG++ICS+GLKDL++KLSIIPQEPTLF+GS+RTNLDPLGLYSD
Sbjct: 1742 ISALFRLVEPASGDILIDGINICSIGLKDLKIKLSIIPQEPTLFKGSIRTNLDPLGLYSD 1801
Query: 1320 DEIWK 1324
D++WK
Sbjct: 1802 DDLWK 1806
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526035|ref|XP_003531625.1| PREDICTED: ABC transporter C family member 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1788 bits (4631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 898/1335 (67%), Positives = 1067/1335 (79%), Gaps = 25/1335 (1%)
Query: 1 MAFLGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRI 60
MA+ G ++ S C +FD SFC Q T ID INL+F CVFY S+++ R+N G
Sbjct: 1 MAYFGNIIDDFSGICLKDFDFTSFCSQRTTIDAINLLFICVFYTSMIISLMRRNSQCGSP 60
Query: 61 RRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVK 118
+ I+VS CCA++ I + L NLIAK D+S ++WL VRG IW SLA+SLLV+
Sbjct: 61 SKSRFFILVSICCAIISIVFYSIGLRNLIAKTDNSKQLNWLACIVRGFIWTSLAVSLLVQ 120
Query: 119 RSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFT 178
R KWI++L ++WW +L LNIEIL + I + I+ ++ LLLF AF+N +F
Sbjct: 121 RLKWIKILNSVWWACSCVLASVLNIEILFKKQAIEIFDIIQWFLHFLLLFCAFQNLGYFV 180
Query: 179 SPNREDKSLSEPLLAEK---NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLV 235
S + +SLSEPLL ++ QT LG+A L KLTFSWIN LLSLGYSK L LEDIPSL+
Sbjct: 181 SQSVP-QSLSEPLLDQEVDTKQTGLGRANFLSKLTFSWINSLLSLGYSKSLVLEDIPSLL 239
Query: 236 PEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVV 295
EDEA+ YQ F +AW+SLVRE + N NLV + +LKENI IA ALLRT AV V
Sbjct: 240 SEDEANLGYQNFMHAWESLVRERSKTNTKNLVLWSVVRTHLKENILIAFWALLRTFAVSV 299
Query: 296 GPLLLYAFVNYSNRGEE---NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSA 352
PL+LYAFVNYSN + NL+EGLSIVG LI++KVVES +QRH FF SRRSG+RMRSA
Sbjct: 300 SPLILYAFVNYSNSRDAKNTNLKEGLSIVGFLILSKVVESLSQRHWFFYSRRSGLRMRSA 359
Query: 353 LMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVL 412
LMVAVY+KQLKLSS R++HS GEIVNYIAVDAYRMGEFP+WFH+ W+ LQL L+IG+L
Sbjct: 360 LMVAVYRKQLKLSSSARRRHSAGEIVNYIAVDAYRMGEFPWWFHIAWTSTLQLVLSIGIL 419
Query: 413 FGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQ 472
FGVVG+G LPGLV LICGL+N PFAKILQ C ++FMI+QDERLRSTSEILN+MKIIKLQ
Sbjct: 420 FGVVGVGVLPGLVPLLICGLINFPFAKILQNCMAQFMISQDERLRSTSEILNSMKIIKLQ 479
Query: 473 SWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNA 532
SWE+KFK+L+E+ R KEF WLS+AQ+ KAYG+ +YWMSPTI+S+V+FLGCAL SAPLNA
Sbjct: 480 SWEDKFKNLVENLRAKEFIWLSKAQIMKAYGSFLYWMSPTIVSAVVFLGCALFNSAPLNA 539
Query: 533 STIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSD 592
TIFTVLA LR++GEPVRMIPEALSIMIQVKVSFDR+N LLD EL+ D R ++ +S
Sbjct: 540 GTIFTVLAMLRNLGEPVRMIPEALSIMIQVKVSFDRLNTILLDEELDGSDGNRRNINRSS 599
Query: 593 -RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
+V+IQ GNF WD E PTLR +NL+IKW QK+AVCG VGAGKSSLLYA+LGE+PKIS
Sbjct: 600 INAVEIQAGNFVWDHESVSPTLRDLNLEIKWGQKVAVCGPVGAGKSSLLYAVLGEVPKIS 659
Query: 652 GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
GTVN+ G+IAYVSQTSWIQ G+++DNIL+GKPMDK RY+ AIK CALDKDI +F HGDLT
Sbjct: 660 GTVNVCGTIAYVSQTSWIQGGTVQDNILFGKPMDKTRYENAIKVCALDKDIEDFSHGDLT 719
Query: 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKT 771
EIGQRG+N+SGGQKQRIQLARAVYNDADIYL DDPFSAVDAHTAA LFN+CVM AL +KT
Sbjct: 720 EIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKT 779
Query: 772 VILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDN 831
VILVTHQVEFLSEVD ILV+E G++TQSGNY+ LL AGTAFEQLV AH++AIT LD
Sbjct: 780 VILVTHQVEFLSEVDTILVMEDGKVTQSGNYENLLTAGTAFEQLVRAHKEAIT---ELDQ 836
Query: 832 AGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGL--TQLTEDEEMEIGDVGWKPF 889
+ G K EE G Y K SEGEIS +G QLT++EE +IGDVGWK F
Sbjct: 837 NNEKGTHK---------EESQG-YLTKNQSEGEISTEGKLGVQLTQEEEKQIGDVGWKTF 886
Query: 890 MDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASA 949
DY++ S+G +LC +L QS F+ LQ A+ +WLA AI++PKITS ILIGVYA +S +SA
Sbjct: 887 WDYISFSRGSLMLCWIMLGQSAFIALQTASMFWLALAIEVPKITSAILIGVYALISFSSA 946
Query: 950 VFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDI 1009
FVY RS F AHLGLKAS AFF+ FT +IF APMLFFDSTPVGRILTR SSDLSILDFDI
Sbjct: 947 GFVYVRSLFTAHLGLKASTAFFNSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDI 1006
Query: 1010 PFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTT 1069
P+SI FVA+ G E++ I IM VTW VL+VAI AMVA ++VQ YY A+AREL+RINGTT
Sbjct: 1007 PYSITFVASVGLEIMVTICIMALVTWPVLIVAIPAMVASKYVQGYYQASARELMRINGTT 1066
Query: 1070 KAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQ 1129
KAPVMN+ AETS GVVT+RAFNM + FF+NYLKLVD DA+LFFH+N MEWL+LR+EALQ
Sbjct: 1067 KAPVMNFAAETSLGVVTVRAFNMTEIFFRNYLKLVDTDAALFFHSNVAMEWLVLRIEALQ 1126
Query: 1130 NLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189
NLT+ T+AL L+++P+GYV GLVGLSLSYAF+LTG+Q+F +RWYC L NYIISVERIKQ
Sbjct: 1127 NLTVITSALLLIIVPQGYVTSGLVGLSLSYAFSLTGSQIFWTRWYCNLLNYIISVERIKQ 1186
Query: 1190 FMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVV 1249
F+H+P EPPAI+ED RPPSSWP KGRI+L+ L+IRYRPNAPLVLKGITCTF EG+RVGVV
Sbjct: 1187 FIHLPVEPPAILEDHRPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFKEGSRVGVV 1246
Query: 1250 GRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRT 1309
GRTGSGK+TLISALFRLV+PA G ILIDG++ICS+GLKDLR+KLSIIPQEPTLF+GS+RT
Sbjct: 1247 GRTGSGKSTLISALFRLVDPAKGYILIDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRT 1306
Query: 1310 NLDPLGLYSDDEIWK 1324
NLDPLGLYSDDEIW+
Sbjct: 1307 NLDPLGLYSDDEIWE 1321
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528827|ref|XP_003532999.1| PREDICTED: ABC transporter C family member 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1726 bits (4469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 868/1329 (65%), Positives = 1041/1329 (78%), Gaps = 25/1329 (1%)
Query: 9 GGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRRECVSIV 68
SWTC +FDL S C Q++IID++ L+F VFY SLLV R++ G R+ V +V
Sbjct: 34 ADFSWTCLRDFDLTSLCSQTSIIDILKLLFIAVFYTSLLVSLIRRHSECGSNRKNWVFLV 93
Query: 69 VSACCAVVGIAYL--GYCLWNLIAKNDSSMSWLVSTVRGLIWVSLAISLLVKRSKWIRML 126
VS CCA++ IA+ G LWN SWL ST R +W+SL ISL V+R+KWI+ L
Sbjct: 94 VSVCCALISIAHFCNGLKLWN-------QKSWLASTFRAFVWLSLTISLHVQRNKWIKSL 146
Query: 127 ITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPN--RED 184
++WW S +L ALNIEI+ + +T+ + ++ V+ LLF AF+N +F + ++
Sbjct: 147 NSIWWASSCVLASALNIEIMFKEHTVELFEMVQWLVHFSLLFCAFQNLPYFATSEGIQDT 206
Query: 185 KSLSEPLLA---EKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEAS 241
SLSEPL+A E QT+LG A LL KLTFSW+N LL LGYSKPLALE+IP L+PEDEA+
Sbjct: 207 TSLSEPLIAPRVETKQTQLGHATLLSKLTFSWVNSLLRLGYSKPLALEEIPFLLPEDEAN 266
Query: 242 FAYQKFAYAWDSLVRENNSNNNGN--LVRKVITNVYLKENIFIAICALLRTIAVVVGPLL 299
AYQ F +AW+SL+ ENN+NNN N LV + + KENI IA+ AL+R+I +++ PL+
Sbjct: 267 SAYQDFVHAWESLLSENNNNNNNNKNLVLWSVVRTFSKENILIALYALIRSICMIISPLI 326
Query: 300 LYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQ 359
LYAFVNYSN E +L+EG SI+G +II+KVVES QRH FGSRRSGM++RSALMVAVYQ
Sbjct: 327 LYAFVNYSNSTEADLKEGFSILGFMIISKVVESLCQRHFGFGSRRSGMKIRSALMVAVYQ 386
Query: 360 KQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLG 419
K LKLSS R++HSTGE+VNYIAVDAYR+GEFP+WFH+TW+ A+QL L+I +LFGVVG G
Sbjct: 387 KLLKLSSSARRRHSTGEVVNYIAVDAYRLGEFPWWFHITWTSAVQLVLSIVLLFGVVGAG 446
Query: 420 ALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFK 479
ALPGLV LICG+LNVPFAK++Q QS+FM+AQDERLR+TSEILN+MKIIKLQSWE+KFK
Sbjct: 447 ALPGLVPLLICGVLNVPFAKMIQNSQSQFMMAQDERLRATSEILNSMKIIKLQSWEDKFK 506
Query: 480 SLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVL 539
+L+ S R KEF WLS+AQ+ KAYG+ +YWM+PTI+ SV+F+GC+L SAPLNA IFTVL
Sbjct: 507 NLVLSLRAKEFIWLSKAQIIKAYGSFLYWMTPTIVPSVVFMGCSLFDSAPLNAGIIFTVL 566
Query: 540 ATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN--NDDVRRISLQKSDRSVKI 597
TLR MGEPVR+IPEALSIMIQVKVSFDR+N FLLD EL+ N R I Q S +V+I
Sbjct: 567 TTLRIMGEPVRLIPEALSIMIQVKVSFDRLNTFLLDEELDSINGYGRNIK-QSSVNAVEI 625
Query: 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY 657
Q GNF WD E PTLR VNL+IKW QKIAVCG VGAGKSSLLYA+LGEIPKISGTVN+
Sbjct: 626 QAGNFIWDHESVSPTLRDVNLEIKWGQKIAVCGPVGAGKSSLLYAVLGEIPKISGTVNVG 685
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
G+IAYVSQTSWIQSG++RDNIL+GKPMDK RY+ A K CALD DIN+F HGDLTEIGQRG
Sbjct: 686 GTIAYVSQTSWIQSGTVRDNILFGKPMDKTRYENATKVCALDMDINDFSHGDLTEIGQRG 745
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
+N+SGGQ+QRIQLARAVYNDADIYL DDPFSAVDAHTAA LFN+CVM AL +KTVILVTH
Sbjct: 746 INMSGGQRQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTH 805
Query: 778 QVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGA 837
QVEFL+EVD ILV+EGG++ QSG+Y++LL A TAFEQLV+AH+ +TG+ + +
Sbjct: 806 QVEFLTEVDTILVMEGGKVIQSGSYEDLLTARTAFEQLVSAHKATLTGVDQKNESEIDSD 865
Query: 838 EKVEKGRTARPEEPNGIYPRKESSEGEI--SVKGLTQLTEDEEMEIGDVGWKPFMDYLNV 895
+V PEE K I V T+DEE EIGD+GWKPF DY++
Sbjct: 866 IEV----MVHPEESQSFISLKSKWSRVILPRVNLGHSFTQDEEKEIGDIGWKPFWDYISF 921
Query: 896 SKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFR 955
SKG LLCL + AQ F+ LQ A+TYWLA AI+IPK+TSGILIGV++ S SAVF+Y R
Sbjct: 922 SKGSFLLCLTMSAQFAFIALQTASTYWLALAIEIPKVTSGILIGVFSLFSLLSAVFIYIR 981
Query: 956 SFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015
S AA+LGLKAS AFFS FT++IF APM FFDSTPVGRILTR SSDLSILD DIP+++
Sbjct: 982 SVLAANLGLKASIAFFSSFTSAIFNAPMFFFDSTPVGRILTRASSDLSILDLDIPYTLTL 1041
Query: 1016 VAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMN 1075
VA ++L I +M VTWQVL+VAI A VA ++Q YY A+ARELIRINGTTKAPVMN
Sbjct: 1042 VAFVAADVLVTICVMVSVTWQVLIVAIPATVASIYIQGYYQASARELIRINGTTKAPVMN 1101
Query: 1076 YTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT 1135
+ AETS GVVT+RAFN V+RFF NYLKLVD+DA+LFFH+ MEW ILR+E LQNLT+FT
Sbjct: 1102 FAAETSLGVVTVRAFNTVNRFFNNYLKLVDMDATLFFHSIVTMEWSILRIEVLQNLTVFT 1161
Query: 1136 AALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPP 1195
AAL L+L+P+GYV GLVGLSL+YA TL QVF SR + +N+IISVERI QF+ IP
Sbjct: 1162 AALLLILLPKGYVPSGLVGLSLAYALTLKEAQVFWSRMFSMSSNHIISVERIMQFIEIPA 1221
Query: 1196 EPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSG 1255
EPPAIVED RPPSSWP KGRI+LR L+IRY PNAPLVLKGI CTF EG RVGVVGRTGSG
Sbjct: 1222 EPPAIVEDNRPPSSWPSKGRIDLRALEIRYHPNAPLVLKGINCTFKEGNRVGVVGRTGSG 1281
Query: 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG 1315
KTTLISALFR+VEP+ G ILIDG++ICS+GLKDLR+KLSIIPQEPTLF+GS+RTNLDPLG
Sbjct: 1282 KTTLISALFRIVEPSSGDILIDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLG 1341
Query: 1316 LYSDDEIWK 1324
LY DDEIWK
Sbjct: 1342 LYDDDEIWK 1350
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1361 | ||||||
| TAIR|locus:2077750 | 1453 | ABCC10 "ATP-binding cassette C | 0.895 | 0.838 | 0.413 | 1.7e-249 | |
| TAIR|locus:2020235 | 1514 | ABCC5 "ATP-binding cassette C5 | 0.523 | 0.470 | 0.411 | 5.3e-241 | |
| TAIR|locus:2090039 | 1466 | ABCC6 "ATP-binding cassette C6 | 0.899 | 0.834 | 0.379 | 7.2e-226 | |
| TAIR|locus:2090029 | 1514 | ABCC3 "ATP-binding cassette C3 | 0.822 | 0.739 | 0.402 | 1.1e-224 | |
| TAIR|locus:2090049 | 1493 | ABCC7 "ATP-binding cassette C7 | 0.884 | 0.806 | 0.370 | 1.9e-216 | |
| TAIR|locus:2081755 | 1539 | ABCC14 "ATP-binding cassette C | 0.541 | 0.478 | 0.351 | 5.7e-213 | |
| TAIR|locus:2043268 | 1516 | ABCC4 "ATP-binding cassette C4 | 0.830 | 0.745 | 0.375 | 8.8e-206 | |
| DICTYBASE|DDB_G0284867 | 1593 | abcC8 "ABC transporter C famil | 0.549 | 0.469 | 0.312 | 5.6e-158 | |
| UNIPROTKB|E1C6S5 | 1552 | ABCC2 "Uncharacterized protein | 0.440 | 0.385 | 0.338 | 3.3e-152 | |
| FB|FBgn0032456 | 1549 | MRP "Multidrug-Resistance like | 0.392 | 0.344 | 0.354 | 1.6e-151 |
| TAIR|locus:2077750 ABCC10 "ATP-binding cassette C10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2403 (851.0 bits), Expect = 1.7e-249, P = 1.7e-249
Identities = 522/1263 (41%), Positives = 751/1263 (59%)
Query: 85 LWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVKRSKWIRM----LITLWWMSFSLLV 138
+W ++ +N S + WLV ++G W+ + + + V+ ++ IR L++++ + L+
Sbjct: 76 IW-VLRENHSKPLILWLVILIQGFTWLFINLIICVRGTR-IRKSSLRLLSIFSFFYGLVS 133
Query: 139 LALNI-------EILARTYTINVVYIXXXXXXXXXXFSAFR----NFSHFTSP-NREDKS 186
L++ E+ RT ++V+ + + +R S P N D +
Sbjct: 134 SCLSVNNAVFGDELAVRTI-LDVLLLPGSVLLLLSAYKGYRFDESGESSLYEPLNAGDSN 192
Query: 187 -LSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQ 245
SE + ++ KAGL L+F W+N L+ G K L EDIP L E+ A Y
Sbjct: 193 GFSEKADFDNRVSQFAKAGLFSTLSFWWLNSLIKRGNVKDLEEEDIPELRKEERAETCYS 252
Query: 246 KFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVN 305
F R S+ ++++ + V+ +E + A ++ +AV GPLLL AF+
Sbjct: 253 LFEENLIEQKRRLGSSCQPSILKVTVLCVW-RELLTSGFFAFMKIVAVSAGPLLLNAFIL 311
Query: 306 YSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFXXXXXXXXXXXALMVAVYQKQLKLS 365
+ EGL + L +K++ES +QR +F L A+ +KQL+L+
Sbjct: 312 VAEGNASFRYEGLVLAVLLFFSKMIESLSQRQWYFRCRIVGLRVRSLLTAAINKKQLRLN 371
Query: 366 SLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQXXXXXXXXXXXXXXXXXXXXX 425
+ R HS EI+NY VDAYR+GEFP+WFH W+ + Q
Sbjct: 372 NSSRLIHSGSEIMNYATVDAYRIGEFPYWFHQLWTTSFQLLIALGILFHSVGVATFSALA 431
Query: 426 XXXXCGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR 485
L N P AK+ K QSE M +QDERL++ +E L NMK++KL +WE FK +IE
Sbjct: 432 VIILTVLCNAPIAKLQNKFQSELMTSQDERLKACNESLVNMKVLKLYAWESHFKKVIEKL 491
Query: 486 REKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSM 545
R E K L Q+RKAY V++W SP +S+ F C PL AS +FT +ATLR +
Sbjct: 492 RNIELKSLKAVQMRKAYNAVLFWSSPVFVSAATFATCYFL-DIPLRASNVFTFVATLRLV 550
Query: 546 GEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS-VKIQEGNFSW 604
+PVRMIP+ + + IQ KV+F RI FL EL + RR + +++ + I+ +FSW
Sbjct: 551 QDPVRMIPDVIGVTIQAKVAFSRIATFLEAPELQGGERRRKQRSEGNQNAIIIKSASFSW 610
Query: 605 DPELAI-PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYV 663
+ + + P LR V+L++K+ +K+AVCG VG+GKS+LL AILGE P +SGT++ YG+IAYV
Sbjct: 611 EEKGSTKPNLRNVSLEVKFGEKVAVCGEVGSGKSTLLAAILGETPCVSGTIDFYGTIAYV 670
Query: 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
SQT+WIQ+G+IRDNIL+G MD+ RY + I+ +LDKD+ GD TEIG+RG+NLSGG
Sbjct: 671 SQTAWIQTGTIRDNILFGGVMDEHRYRETIQKSSLDKDLELLPDGDQTEIGERGVNLSGG 730
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
QKQRIQLARA+Y DADIYL DDPFSAVDAHTA++LF E VM AL K V+LVTHQV+FL
Sbjct: 731 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFQEYVMDALAGKAVLLVTHQVDFLP 790
Query: 784 EVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKG 843
D +L++ G+IT++ YQELL F+ LVNAHR+ G+E+V
Sbjct: 791 AFDSVLLMSDGEITEADTYQELLARSRDFQDLVNAHRET------------AGSERVVA- 837
Query: 844 RTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLC 903
P +P R SS+ ++ +K ++L + EE E GD G +P++ Y+N +KG
Sbjct: 838 -VENPTKPVKEINRVISSQSKV-LKP-SRLIKQEEREKGDTGLRPYIQYMNQNKGYIFFF 894
Query: 904 LGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLG 963
+ LAQ F Q W+A + P++++ LI VY + S + + RS +
Sbjct: 895 IASLAQVTFAVGQILQNSWMAANVDNPQVSTLKLILVYLLIGLCSVLCLMVRSVCVVIMC 954
Query: 964 LKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023
+K+S + FS NS+F+APM F+DSTP+GRIL+R+SSDLSI+D D+PF ++FV AS
Sbjct: 955 MKSSASLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFVVASSVNT 1014
Query: 1024 LAIIGIMTFVTWQVLVVAIFAMVAVRF-VQRYYIATARELIRINGTTKAPVMNYTAETSQ 1082
+G++ VTWQVL V++ MV + F +Q+YY TA+EL+RINGTT++ V N+ AE+
Sbjct: 1015 GCSLGVLAIVTWQVLFVSV-PMVYLAFRLQKYYFQTAKELMRINGTTRSYVANHLAESVA 1073
Query: 1083 GVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNXXXXXXXXXXVL 1142
G +TIRAF+ +RFF+ L L+D +AS FFH+ EWLI R+E + +L
Sbjct: 1074 GAITIRAFDEEERFFKKSLTLIDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFCMIL 1133
Query: 1143 IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202
+P G + G +G++LSY +L V+ + CYLAN+IISVER+ Q+ H+ PE P ++E
Sbjct: 1134 LPTGTFSSGFIGMALSYGLSLNMGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPEVIE 1193
Query: 1203 DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISA 1262
+ RPP +WP GR+E+ L+IRYR +PLVLKGI+CTF LISA
Sbjct: 1194 ETRPPVNWPVTGRVEISDLQIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLISA 1253
Query: 1263 LFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEI 1322
LFRLVEP GG I++DGVDI +G+ DLR + IIPQ+PTLF G+VR NLDPL +SD EI
Sbjct: 1254 LFRLVEPVGGKIVVDGVDISKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSDAEI 1313
Query: 1323 WKV 1325
W+V
Sbjct: 1314 WEV 1316
|
|
| TAIR|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1416 (503.5 bits), Expect = 5.3e-241, Sum P(2) = 5.3e-241
Identities = 300/729 (41%), Positives = 431/729 (59%)
Query: 111 LAISLLVKRSKWIRMLITLWW-MSFSLLVLA-------LNIEILARTYTINVVYIXXXXX 162
L + L K S+ + L+ +WW ++FS+ + L IE +R + V +
Sbjct: 129 LVLHLKYKSSEKLPFLVRIWWFLAFSICLCTMYVDGRRLAIEGWSRCSSHVVANLAVTPA 188
Query: 163 XXXXXFSAFRNFSHFTSPNREDKSLSEPLLAEKNQ-----TELGKAGLLRKLTFSWINPL 217
F A+R S R L EPLL E+ T AGL+ +T SW++PL
Sbjct: 189 LGFLCFLAWRGVSGI-QVTRSSSDLQEPLLVEEEAACLKVTPYSTAGLVSLITLSWLDPL 247
Query: 218 LSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLK 277
LS G +PL L+DIP L P D A +Y+ W EN S +L R ++ + + K
Sbjct: 248 LSAGSKRPLELKDIPLLAPRDRAKSSYKVLKSNWKRCKSENPSKPP-SLARAIMKSFW-K 305
Query: 278 ENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRH 337
E A+ A L T+ VGP L+ FV+Y E EG + G +K++E+ T R
Sbjct: 306 EAACNAVFAGLNTLVSYVGPYLISYFVDYLGGKEIFPHEGYVLAGIFFTSKLIETVTTRQ 365
Query: 338 CFFXXXXXXXXXXXALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHL 397
+ AL VY+K LKLSS+ ++ H++GEIVNY+AVD R+G++ ++ H
Sbjct: 366 WYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYMAVDVQRIGDYSWYLHD 425
Query: 398 TWSLALQXXXXXXXXXXXXXXXXXXXXXXXXXCGLLNVPFAKILQKCQSEFMIAQDERLR 457
W L +Q L+ +P AK+ + Q + M A+DER+R
Sbjct: 426 IWMLPMQIVLALAILYKSVGIAAVATLVATIISILVTIPLAKVQEDYQDKLMTAKDERMR 485
Query: 458 STSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSV 517
TSE L NM+++KLQ+WE++++ +E RE+E+ WL +A +A+ T I+W SP +++V
Sbjct: 486 KTSECLRNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKALYSQAFVTFIFWSSPIFVAAV 545
Query: 518 IFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE 577
F G+ L A + + LAT R + EP+R P+ +S+M Q KVS DRI+ FL + E
Sbjct: 546 TFATSIFLGTQ-LTAGGVLSALATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEE 604
Query: 578 LNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637
L D I S+ +++I++G F WDP + PTL G+ + ++ ++AVCG+VG+GKS
Sbjct: 605 LQEDATVVIPRGLSNIAIEIKDGVFCWDPFSSRPTLSGIQMKVEKGMRVAVCGTVGSGKS 664
Query: 638 SLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACA 697
S + ILGEIPKISG V + G+ YVSQ++WIQSG+I +NIL+G PM+K +Y I+AC+
Sbjct: 665 SFISCILGEIPKISGEVRICGTTGYVSQSAWIQSGNIEENILFGSPMEKTKYKNVIQACS 724
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
L KDI F HGD T IG+RG+NLSGGQKQR+QLARA+Y DADIYL DDPFSA+DAHT +
Sbjct: 725 LKKDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDADIYLLDDPFSALDAHTGSD 784
Query: 758 LFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
LF + +++AL +KTV+ VTHQVEFL D ILVL+ G+I QSG Y +LL AGT F+ LV+
Sbjct: 785 LFRDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQSGKYDDLLQAGTDFKALVS 844
Query: 818 AHRDAITGL 826
AH +AI +
Sbjct: 845 AHHEAIEAM 853
|
|
| TAIR|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2180 (772.5 bits), Expect = 7.2e-226, P = 7.2e-226
Identities = 478/1261 (37%), Positives = 707/1261 (56%)
Query: 106 LIWVSLAISLLVKRS----KWIRMLITLWWMSF---SLLVLALNIEILARTYTINVVYIX 158
L W S+++ L + + + + L+ +WW+ F S L ++ + + ++V ++
Sbjct: 101 LTWGSISVYLFGRYTNSCEQKVLFLLRVWWVFFFVVSCYHLVVDFVLYKKQEMVSVHFVI 160
Query: 159 XXXXXXXXXFSAFRNFSHFTSPNREDKSLSEPLL--AEKNQTE-----LGKAGLLRKLTF 211
+ L EPLL AE + E KAG+L +++F
Sbjct: 161 SDLVGVCAGLFLCCSCLWKKGEGERIDLLKEPLLSSAESSDNEEVTAPFSKAGILSRMSF 220
Query: 212 SWINPLLSLGYSKPLALEDIPSLVPED--EASFAYQKFAYAWDSLVRENNSNNNGNLVRK 269
SW++PL++LG K + ++D+P L D E+ F + WD R + L++
Sbjct: 221 SWMSPLITLGNEKIIDIKDVPQLDRSDTTESLFWIFRSKLEWDDGERRITTFK---LIKA 277
Query: 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKV 329
+ +V+ ++ + A+ A + T++ V P L+ FV Y N + +G +V + K+
Sbjct: 278 LFLSVW-RDIVLSALLAFVYTVSCYVAPYLMDNFVQYLNGNRQYKNQGYVLVTTFFVAKL 336
Query: 330 VESFTQRHCFFXXXXXXXXXXXALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMG 389
VE TQR FF L+ +Y+K L L ++ H++GEI+N +AVDA R+
Sbjct: 337 VECQTQRQWFFRGQKAGLGMRSVLVSMIYEKGLTLPCHSKQGHTSGEIINLMAVDADRIS 396
Query: 390 EFPFWFHLTWSLALQXXXXXXXXXXXXXXXXXXXXXXXXXCGLLNVPFAKILQKCQSEFM 449
F ++ H W L LQ L N PFAK+ +K QS M
Sbjct: 397 AFSWFMHDPWILVLQVSLALWILYKSLGLGSIAAFPATILVMLANYPFAKLEEKFQSSLM 456
Query: 450 IAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM 509
++D R++ TSE+L NMKI+KLQ WE KF S I R E WL + + + W
Sbjct: 457 KSKDNRMKKTSEVLLNMKILKLQGWEMKFLSKILELRHIEAGWLKKFVYNSSAINSVLWA 516
Query: 510 SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569
+P+ IS+ F C L PL + I LAT R + P+ +PE +S+++Q KVS +RI
Sbjct: 517 APSFISATAFGACLLL-KIPLESGKILAALATFRILQGPIYKLPETISMIVQTKVSLNRI 575
Query: 570 NAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVC 629
+FL +L D V R+ S+ +V+I G FSWD IPTLR +N + +A+C
Sbjct: 576 ASFLCLDDLQQDVVGRLPSGSSEMAVEISNGTFSWDDSSPIPTLRDMNFKVSQGMNVAIC 635
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARY 689
G+VG+GKSSLL +ILGE+PKISG + + G AY++Q+ WIQSG + +NIL+GKPM++ Y
Sbjct: 636 GTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENILFGKPMEREWY 695
Query: 690 DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
D+ ++AC+L+KD+ D T IG+RG+NLSGGQKQRIQ+ARA+Y DADIYLFDDPFSA
Sbjct: 696 DRVLEACSLNKDLEILPFHDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSA 755
Query: 750 VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809
VDAHT + LF E ++ L KTVI VTHQVEFL E D ILV++ G+ITQ+G Y E+L +G
Sbjct: 756 VDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLILVMKDGKITQAGKYHEILDSG 815
Query: 810 TAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKG 869
T F +LV AH +A L +D+ G A EK T ++ N + KE E K
Sbjct: 816 TDFMELVGAHTEA---LATIDSCETGYAS--EKSTT---DKENEVLHHKEKQENGSDNKP 867
Query: 870 LTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI 929
QL ++EE E G VG+ + Y+ ++ G +++ L ++ Q F L + YW+ + +
Sbjct: 868 SGQLVQEEEREKGKVGFTVYKKYMALAYGGAVIPLILVVQVLFQLLSIGSNYWMTWVTPV 927
Query: 930 -----PKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPML 984
P ++ LI VY ++ AS+ + R+ A G K + F+ IF+A M
Sbjct: 928 SKDVEPPVSGFTLILVYVLLAVASSFCILIRALLVAMTGFKMATELFTQMHLRIFRASMS 987
Query: 985 FFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFA 1044
FFD+TP+GRIL R S+D S+ D +P +VA + +L IIG++ V WQVL+V I
Sbjct: 988 FFDATPMGRILNRASTDQSVADLRLPGQFAYVAIAAINILGIIGVIVQVAWQVLIVFIPV 1047
Query: 1045 MVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLV 1104
+ A + ++YYI+ AREL R+ G +++PV+++ +ET G+ TIR+F+ RF + ++L
Sbjct: 1048 VAACAWYRQYYISAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLS 1107
Query: 1105 DIDASLFFHTNGVMEWLILRVEALQNXXXXXXXXXXVLIPRGYVAPGLVGLSLSYAFTLT 1164
D + L FH+ G MEWL R+E L V P G + P L GL+++YA L
Sbjct: 1108 DCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLAGLAITYALNLN 1167
Query: 1165 GTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIR 1224
Q L C L N +ISVER+ Q+ +IP EPP ++E RP SWP +G I + L++R
Sbjct: 1168 TLQATLIWTLCDLENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITICNLQVR 1227
Query: 1225 YRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSILIDGVDICSM 1284
Y P+ P+VL G+TCTF LI LFR+VEPA G I IDG++I S+
Sbjct: 1228 YGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILSI 1287
Query: 1285 GLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKV---SQLTPNSRNSRIDIDF 1341
GL DLR +LSIIPQ+PT+F G++R+NLDPL Y+DD+IW+ QL R + +D
Sbjct: 1288 GLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTDDQIWEALDNCQLGDEVRKKELKLDS 1347
Query: 1342 P 1342
P
Sbjct: 1348 P 1348
|
|
| TAIR|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2169 (768.6 bits), Expect = 1.1e-224, P = 1.1e-224
Identities = 459/1141 (40%), Positives = 675/1141 (59%)
Query: 198 TELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRE 257
T +AG+L LTFSW++PL+ +G K L LED+P L D KF +S
Sbjct: 244 TPYSRAGILSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLES---P 300
Query: 258 NNSNNNGNLVRKVITNVYLK---ENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENL 314
+ +G K+I +Y E + A A + T+A VGP L+ FV Y N +
Sbjct: 301 DGGERSGVTTFKLIKALYFTAQWEILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYN 360
Query: 315 QEGLSIVGCLIITKVVESFTQRHCFFXXXXXXXXXXXALMVAVYQKQLKLSSLGRKKHST 374
EG +V K+VE +QRH FF AL+ +Y+K L LS ++ ++
Sbjct: 361 HEGYVLVITFFAAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTS 420
Query: 375 GEIVNYIAVDAYRMGEFPFWFHLTWSLALQXXXXXXXXXXXXXXXXXXXXXXXXXCGLLN 434
GEI+N++ VDA R+G F ++ H W + LQ L+N
Sbjct: 421 GEIINFMTVDAERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLASIAALVATIIVMLIN 480
Query: 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLS 494
PF ++ ++ Q + M A+D R++STSEIL NM+I+KLQ WE KF S I R+ E WL
Sbjct: 481 FPFGRMQERFQEKLMEAKDSRMKSTSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLK 540
Query: 495 EAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPE 554
+ A + ++W +PT++S F C L G PL + I + LAT R + EP+ +P+
Sbjct: 541 KYVYNSAVISFVFWGAPTLVSVSTFGACILLG-IPLESGKILSALATFRILQEPIYNLPD 599
Query: 555 ALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLR 614
+S+++Q KVS DR+ ++L L D V R+ SD +V++ SWD + PTL+
Sbjct: 600 TISMIVQTKVSLDRLASYLCLDNLQPDIVERLPKGSSDVAVEVINSTLSWDVSSSNPTLK 659
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI 674
+N + K+AVCG+VG+GKSSLL ++LGE+PK+SG++ + G+ AYV+Q+ WIQSG I
Sbjct: 660 DINFKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGKI 719
Query: 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734
DNIL+GKPM++ RYDK ++AC+L KD+ GD T IG+RG+NLSGGQKQRIQ+ARA+
Sbjct: 720 EDNILFGKPMERERYDKVLEACSLSKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 779
Query: 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794
Y DADIYLFDDPFSAVDAHT + LF E ++ L K+VI VTHQVEFL D ILV++ G
Sbjct: 780 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDG 839
Query: 795 QITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGR-TARPEEPNG 853
+I+Q+G Y ++L +GT F +L+ AH++A+ + +D +EK G+ ++
Sbjct: 840 RISQAGKYNDILNSGTDFMELIGAHQEALAVVDSVD--ANSVSEKSALGQENVIVKDAIA 897
Query: 854 IYPRKESSE---GEI-SVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQ 909
+ + ES + ++ SV+ Q+ ++EE E G V + Y+ ++ G +L+ +L Q
Sbjct: 898 VDEKLESQDLKNDKLESVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALVPFILLGQ 957
Query: 910 SGFVGLQAAATYWLAYA------IQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLG 963
F LQ + YW+A+A +Q P S ++I VY ++ S++ + R+ G
Sbjct: 958 VLFQLLQIGSNYWMAWATPVSEDVQAPVKLSTLMI-VYVALAFGSSLCILLRATLLVTAG 1016
Query: 964 LKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023
K + F + IF++PM FFDSTP GRI++R S+D S +D ++P+ VA + +L
Sbjct: 1017 YKTATELFHKMHHCIFRSPMSFFDSTPSGRIMSRASTDQSAVDLELPYQFGSVAITVIQL 1076
Query: 1024 LAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQG 1083
+ IIG+M+ V+W V +V I + A + QRYYIA AREL R+ G KAP++ + +ET G
Sbjct: 1077 IGIIGVMSQVSWLVFLVFIPVVAASIWYQRYYIAAARELSRLVGVCKAPLIQHFSETISG 1136
Query: 1084 VVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNXXXXXXXXXXVLI 1143
TIR+F+ RF + ++L D + F+T G MEWL R++ L + V I
Sbjct: 1137 ATTIRSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVSI 1196
Query: 1144 PRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVED 1203
P G + P L GL+++Y +L Q +L C L N IISVERI Q+ +P EPP ++E
Sbjct: 1197 PTGVIDPSLAGLAVTYGLSLNTLQAWLIWTLCNLENKIISVERILQYASVPSEPPLVIES 1256
Query: 1204 KRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISAL 1263
RP SWP +G +E+R L++RY P+ PLVL+GITCTF LI L
Sbjct: 1257 NRPEQSWPSRGEVEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTL 1316
Query: 1264 FRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIW 1323
FR+VEP+ G I IDGV+I ++GL DLR++LSIIPQ+PT+F G++R+NLDPL Y+DD+IW
Sbjct: 1317 FRIVEPSAGEIRIDGVNILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIW 1376
Query: 1324 K 1324
+
Sbjct: 1377 E 1377
|
|
| TAIR|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2091 (741.1 bits), Expect = 1.9e-216, P = 1.9e-216
Identities = 463/1249 (37%), Positives = 692/1249 (55%)
Query: 125 MLITLWWM---SFSLLVLALNIEILARTYTINV-VYIXXXXXXXXXXFSAFRNFSHFTSP 180
+L+ +WW+ FS L ++I + + ++V + + F +
Sbjct: 136 ILLRVWWVLYFMFSCYRLLVDIALYKKQELVSVHLLLSDVLAVSVGLFLCYSCLQKQGQG 195
Query: 181 NREDKSLSEPLL---------------AEKNQ--TELGKAGLLRKLTFSWINPLLSLGYS 223
R + L EPLL AE ++ T AG L ++FSW++PL+ LG
Sbjct: 196 ERINLLLEEPLLNGAESSAATSVQLDKAEDDEVVTPFSNAGFLSHVSFSWMSPLIVLGNE 255
Query: 224 KPLALEDIPSLVPEDEASFAYQKFA--YAWDSLVRENNSNNNGNLVRKVITNVYLKENIF 281
K + ED+P + D A + F WD R + L++ + +V+ ++ +
Sbjct: 256 KIIDSEDVPQVDNSDRAEKLFWIFRSKLEWDDGERRITTYK---LIKALFFSVW-RDILL 311
Query: 282 IAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFX 341
+ A + T++ V P L+ FV Y N + +G+ +V + K+VE +R+ +F
Sbjct: 312 STLFAFVYTVSCYVAPYLMDTFVQYLNGQRQYSNQGVVLVTTFFVAKLVECQARRNWYFR 371
Query: 342 XXXXXXXXXXALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSL 401
L+ +Y+K L L ++ H++GEI+N + VDA R+ F ++ H W L
Sbjct: 372 LQKAGIGMRSVLVSMIYEKGLTLPCYSKQGHTSGEIINLMTVDAERISAFSWYMHDPWIL 431
Query: 402 ALQXXXXXXXXXXXXXXXXXXXXXXXXXCGLLNVPFAKILQKCQSEFMIAQDERLRSTSE 461
LQ L N+P AK+ +K Q M ++D R++ TSE
Sbjct: 432 VLQISLALLILYRSLGLGSIAAFAATFLVMLGNIPLAKLEEKFQGNLMESKDNRMKKTSE 491
Query: 462 ILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLG 521
L NM+I+KLQ WE KF I R E WL + A + + W +P+ +S+ F
Sbjct: 492 ALLNMRILKLQGWEMKFLHKILDLRGIEAGWLKKFVYNSAAISSVLWAAPSFVSATAFGA 551
Query: 522 CALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581
C L PL + I LAT R + P+ +P+ +S+++Q KVS DRI FL +L D
Sbjct: 552 CMLL-KIPLESGKIIAALATFRILQTPIYKLPDTISMIVQTKVSLDRIATFLCLDDLQQD 610
Query: 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLY 641
+ R+ S V++ G FSWD IPTL+ + I IA+CG+VG+GKSSLL
Sbjct: 611 GMERLPSGSSKMDVEVSNGAFSWDDSSPIPTLKDIRFKIPHGMNIAICGTVGSGKSSLLS 670
Query: 642 AILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
+ILGE+PKISG + + G AY++Q+ WIQSG + +NIL+GKPM + Y + ++AC+L+KD
Sbjct: 671 SILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENILFGKPMQREWYQRVLEACSLNKD 730
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ F D T IG+RG+NLSGGQKQRIQ+ARA+Y DADIYLFDDPFSAVDAHT + LF E
Sbjct: 731 LEVFPFRDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 790
Query: 762 CVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRD 821
++ L KTVI VTHQ+EFL E D ILV++ G+ITQ+G Y E+L +GT F +LV AH D
Sbjct: 791 VLLGLLRNKTVIYVTHQLEFLPEADLILVMKDGRITQAGKYNEILESGTDFMELVGAHTD 850
Query: 822 AITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEI 881
A L +D+ +G A + T++ + + ++E E S KG QL ++EE E
Sbjct: 851 A---LAAVDSYEKGSASA--QSTTSKESKVSNDEEKQE--EDLPSPKG--QLVQEEEREK 901
Query: 882 GDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK----ITSG-I 936
G VG+ + Y+ ++ G +L+ + ++ Q F L + YW+A+ + K + SG
Sbjct: 902 GKVGFTVYQKYMKLAYGGALVPIILVVQILFQVLNIGSNYWMAWVTPVSKDVKPLVSGST 961
Query: 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILT 996
LI VY ++TAS+ + R+ +A G K + F+ IF+A M FFD+TP+GRIL
Sbjct: 962 LILVYVFLATASSFCILVRAMLSAMTGFKIATELFNQMHFRIFRASMSFFDATPIGRILN 1021
Query: 997 RLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYI 1056
R S+D S +D +P +A + +L IIG+M V WQVL+V I + A + ++YYI
Sbjct: 1022 RASTDQSAVDLRLPSQFSNLAIAAVNILGIIGVMGQVAWQVLIVFIPVIAACTWYRQYYI 1081
Query: 1057 ATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNG 1116
+ AREL R++G +++P++ + +ET G+ TIR+F+ RF + ++L D + L FH
Sbjct: 1082 SAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYSRLRFHAIS 1141
Query: 1117 VMEWLILRVEALQNXXXXXXXXXXVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176
MEWL R++ L V +P G + P GL+++YA L Q L C
Sbjct: 1142 AMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAGLAVTYALNLNSLQATLIWTLCD 1201
Query: 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGI 1236
L N +ISVER+ Q++ IP EP ++E RP SWP +G I + L++RY P+ P+VL+G+
Sbjct: 1202 LENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRGEITICNLQVRYGPHLPMVLRGL 1261
Query: 1237 TCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
TCTF LI LFR+VEPA G I IDG++I ++GL DLR +LSII
Sbjct: 1262 TCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILTIGLHDLRSRLSII 1321
Query: 1297 PQEPTLFRGSVRTNLDPLGLYSDDEIWKV---SQLTPNSRNSRIDIDFP 1342
PQEPT+F G+VR+NLDPL Y+DD+IW+ QL R + +D P
Sbjct: 1322 PQEPTMFEGTVRSNLDPLEEYADDQIWEALDKCQLGDEIRKKELKLDSP 1370
|
|
| TAIR|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1204 (428.9 bits), Expect = 5.7e-213, Sum P(2) = 5.7e-213
Identities = 264/752 (35%), Positives = 409/752 (54%)
Query: 178 TSPNREDKSLSEPLLAEK--NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLV 235
T+ N + S ++ EK N + A + K + W+NPLL GY PL L+ +P+L
Sbjct: 226 TTSNVTAPAKSNDVVVEKSENVSLYASASFISKTFWLWMNPLLRKGYKSPLNLDQVPTLS 285
Query: 236 PEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVV 295
PE A F W + NS N VR + + KE F A+ A++R + V
Sbjct: 286 PEHRAEKLATLFESKWPK--PQENSRNP---VRTTLIRCFWKEIAFTAVLAIIRLSVIYV 340
Query: 296 GPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFXXXXXXXXXXXALMV 355
GP+L+ +FV++++ + +G +V L+I K VE + F L+
Sbjct: 341 GPVLIQSFVDFTSGKRSSPSQGYYLVLILLIAKFVEVLSTHQFNFNSQKLGMLIRSTLIT 400
Query: 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQXXXXXXXXXXX 415
A+Y+K LKL+ R+ H G+IVNY+AVDA ++ + H W + LQ
Sbjct: 401 ALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVAAAIVLLYNT 460
Query: 416 XXXXXXXXXXXXXXCGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWE 475
+ + K + Q M+ +D R+++T+E+LN M++IK Q+WE
Sbjct: 461 LGPSVVTTVIGLTGIFVFILLGTKRNNRYQFSLMMNRDSRMKATNEMLNYMRVIKFQAWE 520
Query: 476 EKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTI 535
+ F I RE EF WLS+ A ++ W +P +IS++ F G L+A T+
Sbjct: 521 DHFNERILKFREMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFTTAVFLG-VKLDAGTV 579
Query: 536 FTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSV 595
FT + + EP+R P+++ + Q +S R++A+++ EL+ + V R + +V
Sbjct: 580 FTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDAYMMSRELSEETVERSQGCDGNVAV 639
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655
+I++G+FSWD E P + +N ++K + A+ G+VG+GKSSLL ++LGE+ K+SG V
Sbjct: 640 EIKDGSFSWDDEDDEPAIENINFEVKKGELAAIVGTVGSGKSSLLASVLGEMHKLSGKVR 699
Query: 656 LYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
+ G+ AYV+QTSWIQ+G+++DNIL+G PM++++Y++ +K C L+KD+ + GD TEIG+
Sbjct: 700 VCGTTAYVAQTSWIQNGTVQDNILFGLPMNRSKYNEVLKVCCLEKDMQIMEFGDQTEIGE 759
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
RG+NLSGGQKQRIQLARAVY ++D+YL DD FSAVDAHT + +F +CV AL+ KT++LV
Sbjct: 760 RGINLSGGQKQRIQLARAVYQESDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTILLV 819
Query: 776 THQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAI----TGLGPLDN 831
THQV+FL VDRILV+ G I QSG Y EL+ +G F +LV AH ++ G
Sbjct: 820 THQVDFLHNVDRILVMRDGMIVQSGKYDELVSSGLDFGELVAAHETSMELVEAGSASATA 879
Query: 832 AGQGGAEKVEKGRTA--RPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPF 889
A A + + + P +P + +S V T + E+ D K F
Sbjct: 880 ANVPMASPITQRSISIESPRQPKSPKVHRTTSMESPRVLRTTSMESPRLSELNDESIKSF 939
Query: 890 MDYLNVSKGMSLLCLGVLAQSGFVGLQAAATY 921
+ N+ + S L + G V Q Y
Sbjct: 940 LGS-NIPEDGSRLIKEEEREVGQVSFQVYKLY 970
|
|
| TAIR|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1975 (700.3 bits), Expect = 8.8e-206, Sum P(2) = 8.8e-206
Identities = 433/1152 (37%), Positives = 643/1152 (55%)
Query: 188 SEPLLAEK--NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQ 245
S+ + EK N + A + K + W+NPLLS GY PL LE +P+L PE +A
Sbjct: 238 SDAVSVEKSDNVSLYASASVFSKTFWLWMNPLLSKGYKSPLTLEQVPTLSPEHKAERLAL 297
Query: 246 KFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVN 305
F +W S N+ + +R + + KE +F AI A++R + VGP+L+ +FV+
Sbjct: 298 LFESSWPK-----PSENSSHPIRTTLLRCFWKEILFTAILAIVRLGVMYVGPVLIQSFVD 352
Query: 306 YSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFXXXXXXXXXXXALMVAVYQKQLKLS 365
+++ + +G +V L++ K VE T F L+ A+Y+K LKL+
Sbjct: 353 FTSGKRSSPWQGYYLVLILLVAKFVEVLTTHQFNFDSQKLGMLIRSTLITALYKKGLKLT 412
Query: 366 SLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQXXXXXXXXXXXXXXXXXXXXX 425
R+ H G+IVNY+AVDA ++ + H W + LQ
Sbjct: 413 GSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVTVALVLLYGSLGASVITAVI 472
Query: 426 XXXXCGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR 485
+ + + Q M +D R+++T+E+LN M++IK Q+WE F I
Sbjct: 473 GLTGVFVFILLGTQRNNGYQFSLMGNRDSRMKATNEMLNYMRVIKFQAWENHFNKRILKF 532
Query: 486 REKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSM 545
R+ EF WLS+ A ++ W +P +IS++ F AL L+A T+FT + +
Sbjct: 533 RDMEFGWLSKFLYSIAGNIIVLWSTPVLISALTF-ATALALGVKLDAGTVFTTTTIFKIL 591
Query: 546 GEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWD 605
EP+R P+++ + Q +S R++++++ EL+ D V R + +V++++G+FSWD
Sbjct: 592 QEPIRTFPQSMISLSQAMISLGRLDSYMMSKELSEDAVERALGCDGNTAVEVRDGSFSWD 651
Query: 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ 665
E P L +N +K + A+ G+VG+GKSSLL ++LGE+ +ISG V + GS YV+Q
Sbjct: 652 DEDNEPALSDINFKVKKGELTAIVGTVGSGKSSLLASVLGEMHRISGQVRVCGSTGYVAQ 711
Query: 666 TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725
TSWI++G+++DNIL+G PM + +Y+K + C+L+KD+ + GD TEIG+RG+NLSGGQK
Sbjct: 712 TSWIENGTVQDNILFGLPMVREKYNKVLNVCSLEKDLQMMEFGDKTEIGERGINLSGGQK 771
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV 785
QRIQLARAVY + D+YL DD FSAVDAHT + +F +CV AL+ KTV+LVTHQV+FL V
Sbjct: 772 QRIQLARAVYQECDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTVLLVTHQVDFLHNV 831
Query: 786 DRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGL-GPLDNAGQGGAEKVEKG- 843
D ILV+ G+I +SG Y EL+ +G F +LV AH ++ + D+A + +
Sbjct: 832 DCILVMRDGKIVESGKYDELVSSGLDFGELVAAHETSMELVEAGADSAAVATSPRTPTSP 891
Query: 844 RTARP----EEPNGIYPRKE---SSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVS 896
+ P E P+ E S G V+ ++L ++EE E G V + Y +
Sbjct: 892 HASSPRTSMESPHLSDLNDEHIKSFLGSHIVEDGSKLIKEEERETGQVSLGVYKQYCTEA 951
Query: 897 KGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITS---GILIGVYAGVSTASAVFVY 953
G + L + + G A+ YWLAY S + I Y ++ S V V
Sbjct: 952 YGWWGIVLVLFFSLTWQGSLMASDYWLAYETSAKNAISFDASVFILGYVIIALVSIVLVS 1011
Query: 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSI 1013
RS++ HLGLK ++ FF NSI APM FFD+TP GRIL+R S+D + +D IPF +
Sbjct: 1012 IRSYYVTHLGLKTAQIFFRQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDILIPFML 1071
Query: 1014 VFVAASGTELLAIIGIMTFVTWQVLVVAI-FAMVAVRFVQRYYIATARELIRINGTTKAP 1072
V + T LL+I + W I + + + + YY+A++REL R++ TKAP
Sbjct: 1072 GLVVSMYTTLLSIFIVTCQYAWPTAFFVIPLGWLNIWY-RNYYLASSRELTRMDSITKAP 1130
Query: 1073 VMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNXX 1132
++++ +E+ GV+TIR+F + F Q +K V+ + + FH NG EWL R+E + +
Sbjct: 1131 IIHHFSESIAGVMTIRSFRKQELFRQENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWV 1190
Query: 1133 XXXXXXXXVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH 1192
VL+P + P VGLSLSY +L F C++ N ++SVERIKQF
Sbjct: 1191 LCISALFMVLLPSNVIRPENVGLSLSYGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTD 1250
Query: 1193 IPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXX 1252
IP E ++ PPS+WPF G + L LK+RYRPN PLVLKGIT
Sbjct: 1251 IPSESEWERKETLPPSNWPFHGNVHLEDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRT 1310
Query: 1253 XXXXXXLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD 1312
LI LFRLVEP+GG I+IDG+DI ++GL DLR + IIPQEP LF G+VR+N+D
Sbjct: 1311 GSGKSTLIQVLFRLVEPSGGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNID 1370
Query: 1313 PLGLYSDDEIWK 1324
P YSD+EIWK
Sbjct: 1371 PTEQYSDEEIWK 1382
|
|
| DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 950 (339.5 bits), Expect = 5.6e-158, Sum P(2) = 5.6e-158
Identities = 243/778 (31%), Positives = 394/778 (50%)
Query: 99 LVSTVRGLIW-VSLAISLL-VKRSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVY 156
L S V + W VSL + L +K+ + I L+W+ F+ V + + RT T+ +
Sbjct: 103 LYSVVTVVQWTVSLGLVYLEMKKGQSRSWEIRLYWV-FAFFVATVKL----RTLTLAIAG 157
Query: 157 IXXXXXXXXXXFSAFRNFS-----HFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTF 211
FS F + TS D S L E ++ A L +LTF
Sbjct: 158 KSIYNVGFLEYFSYFVGYCLILILSITSVLFFDNLESYQNLEENEISKEVNANLFSRLTF 217
Query: 212 SWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVI 271
WIN +L G+ K L + D+P+L D++ +KF AW+ +++ N + L +
Sbjct: 218 WWINSVLVKGHKKALEISDVPTLGEIDQSILLSEKFEKAWEEQLKKPNPSLPWALAKAFG 277
Query: 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNY--SNRGEENLQEGLSIVGCLIITKV 329
+ Y+ A+ +++ + + VGP LL + + S G ++ +GL + V
Sbjct: 278 PHFYIA-----ALFKIIQDLLIFVGPTLLKRVLGFVESRDGSQDTYDGLIYALLYFLAPV 332
Query: 330 VESFTQRHCFFXXXXXXXXXXXALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMG 389
V+S F A++ AVY+K LK +SL R+ + GEIVN ++VDA +
Sbjct: 333 VQSLLLHQYFHRCYRVGMWLRSAVVTAVYKKALK-TSL-REGTTIGEIVNLMSVDAQKFM 390
Query: 390 EFPFWFHLTWSLALQXXXXXXXXXXXXXXXXXXXXXXXXXCGLLNVPFAKILQKCQSEFM 449
+ + H+ WS LQ +N+ + + +K Q+ M
Sbjct: 391 DLCPYLHMIWSAPLQLAISLVLLYRILNASVFAGLGIMLVMIPINLAISNLAKKRQTISM 450
Query: 450 IAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM 509
+D R ++ +E+LN +K+IKL SWE+ F + R KE + + + + +++ M
Sbjct: 451 KLKDRRTKAVNEVLNGIKVIKLYSWEQSFMDHVNEIRNKELDVMKAIKYIQGFSLLLWSM 510
Query: 510 SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569
SP +S F LTG L+A+ F L+ M P+ M+P +S +I+ VS R+
Sbjct: 511 SPVFVSVSTFTVYILTGQV-LSATQAFPALSLFNVMQFPINMLPSVVSSIIEASVSVARL 569
Query: 570 NAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVC 629
FLL +L+ + V + + +VKI W+P P L +NL IK + +A+
Sbjct: 570 QKFLLKKDLDPNVVEH-HINEPGIAVKIDNATLEWEPNK--PILHDINLTIKKGELVAIV 626
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARY 689
G VG+GKSS++ +++G++ K GTV + GS+A VSQ +WIQ+ ++++NIL+ K +++ +Y
Sbjct: 627 GQVGSGKSSIVSSLVGDLDKTKGTVAVNGSVALVSQQAWIQNATLKNNILFAKELNQDKY 686
Query: 690 DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
++AC L+ DI GD TEIG++G+NLSGGQKQR+ +ARAVYN+ADIY+FDDP SA
Sbjct: 687 QSVVQACCLEPDIKILPGGDQTEIGEKGINLSGGQKQRVSIARAVYNNADIYIFDDPLSA 746
Query: 750 VDAHTAATLFNECVM---AALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
VDAH +F + L KT ILVTH V +L VDRI++++ G+I + G++ L+
Sbjct: 747 VDAHVGKAIFKNVLSNQDGILCNKTRILVTHAVHYLPYVDRIILMKDGRIVEEGDFNTLI 806
Query: 807 LAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGE 864
AG+ F +L++ H + L + + G E N + E EGE
Sbjct: 807 EAGSHFTELMS-HDEQQQQLQQQQAPDKSSDSNEQIGGGDNKESENN-EEQNEEEEGE 862
|
|
| UNIPROTKB|E1C6S5 ABCC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 855 (306.0 bits), Expect = 3.3e-152, Sum P(4) = 3.3e-152
Identities = 206/609 (33%), Positives = 316/609 (51%)
Query: 269 KVITNVYLKENIFIAIC-ALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIIT 327
K + +L +N+ +++ L+ + V V P LL + + + E +G L +T
Sbjct: 331 KALFRTFL-QNLMMSVAFKLVHDVLVFVSPQLLKLLITFVSDAEAFAWQGYLYSILLFLT 389
Query: 328 KVVESFTQRHCFFXXXXXXXXXXXALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYR 387
+++S + F +L+ A+Y+K L +SS RK+ + GE VN ++ DA R
Sbjct: 390 AMLQSLCLQQYFNLCFQLGTNVRASLIAAIYKKALTMSSATRKESTVGETVNLMSADAQR 449
Query: 388 MGEFPFWFHLTWSLALQXXXXXXXXXXXXXXXXXXXXXXXXXCGLLNVPFAKILQKCQSE 447
+ + H WS LQ +N + Q
Sbjct: 450 FMDMANFVHQLWSSPLQIILSIVFLWGELGPSVLAGLAVMVLLIPINGFLVNKSKHIQVR 509
Query: 448 FMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIY 507
M +DER++ E+LN +KI+KL +WE F+ I R E K L + ++ ++
Sbjct: 510 NMKNKDERMKIMGEVLNGIKILKLFAWEPSFEKRINEIRACELKDLLKFSYLQSVSIFVF 569
Query: 508 WMSPTIISSVIFLGCALTG-SAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSF 566
+P ++S F L + L+A FT ++ + P+ M+P LS M+Q VS
Sbjct: 570 TCAPFLVSLASFAVYVLVDENNVLDAQKAFTSISLFNVLRFPMAMLPLVLSSMVQTNVSK 629
Query: 567 DRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKI 626
+R+ +L +L+ + S+ S +V+ E F+W+ + +R V LDIK +
Sbjct: 630 ERLERYLGGEDLDTSAIHHDSIPGS--AVRFTEATFTWEHD-GNAVIRDVTLDIKPGSLV 686
Query: 627 AVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDK 686
AV G+VG+GKSSL+ A+LGE+ I G +N+ GS+AYV Q +WIQ+ +++DNIL+G +D+
Sbjct: 687 AVVGAVGSGKSSLISAMLGEMENIKGHINIQGSLAYVPQQAWIQNATLKDNILFGSELDE 746
Query: 687 ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746
ARY K IKACAL D+ GD TEIG++G+NLSGGQKQR+ LARAVYNDADIY+ DDP
Sbjct: 747 ARYQKVIKACALLPDLELLPAGDQTEIGEKGINLSGGQKQRVSLARAVYNDADIYILDDP 806
Query: 747 FSAVDAHTAATLFNECV--MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQE 804
SAVDAH LF + L+KKT ILVTH + FL +VD I+VL G +++ G+Y
Sbjct: 807 LSAVDAHVGKHLFEHVLGPKGLLQKKTQILVTHSISFLPQVDNIVVLVAGAVSEHGSYST 866
Query: 805 LLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEE-PNGIYPRKESSEG 863
LL AF Q +N++ G + G E+ ++ EE P+ + E
Sbjct: 867 LLANRGAFAQFLNSYGSQEEGAAE-ETTADGIEEQGDESMEPCVEEGPDDVVTMTLKREA 925
Query: 864 EISVKGLTQ 872
I K T+
Sbjct: 926 SIHRKEFTR 934
|
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| FB|FBgn0032456 MRP "Multidrug-Resistance like Protein 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 841 (301.1 bits), Expect = 1.6e-151, Sum P(3) = 1.6e-151
Identities = 193/545 (35%), Positives = 299/545 (54%)
Query: 280 IFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQ-EGLSIVGCLIITKVVESFTQRHC 338
+F A+ L P +L +++ + + +G+ L + ++F
Sbjct: 334 LFGALMKLFTDTLTFAQPQVLSLIISFVEAQDAEPEWKGILYAVLLFVLAAAQTFILGQY 393
Query: 339 FFXXXXXXXXXXXALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLT 398
F AL+ A+Y+K L++S+ +K+ + GEIVN +AVDA R E + ++
Sbjct: 394 FHRMFIVGLRIRTALINAIYRKALRISNSTKKESTVGEIVNLMAVDAQRFMELTTYLNMI 453
Query: 399 WSLALQXXXXXXXXXXXXXXXXXXXXXXXXXCGLLNVPFAKILQKCQSEFMIAQDERLRS 458
WS LQ +N A ++ Q M +DER++
Sbjct: 454 WSAPLQIGLALYFLWQQLGPSVLAGLAVMIILIPVNGVIASRIKTYQIRQMKYKDERVKL 513
Query: 459 TSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM-SPTIISSV 517
+E+L+ +K++KL +WE F+ + R+KE L A GT W +P ++S V
Sbjct: 514 MNEVLSGIKVLKLYAWEPSFEKQVLDIRDKEIATLRSTAYLNA-GTSFLWSCAPFLVSLV 572
Query: 518 IFLGCALTG-SAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH 576
F L + L+A+ F L+ + P+ M+P ++ ++Q +VS +RIN FL
Sbjct: 573 TFATYVLIDENNVLDATKTFVSLSLFNILRFPLTMLPMLITNLVQTQVSVNRINKFLNSE 632
Query: 577 ELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGK 636
EL+ + V S + S I+ G FSW E+ TLR +N+++K +A+ G+VG+GK
Sbjct: 633 ELDPNSVLHDSSKPHPMS--IENGEFSWGDEI---TLRNINIEVKKGSLVALVGTVGSGK 687
Query: 637 SSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKAC 696
SS++ A LGE+ K++G VN G +AYV Q +WIQ+ ++RDNIL+G+ D+ RY+K I AC
Sbjct: 688 SSVVQAFLGEMEKLAGVVNTVGKLAYVPQQAWIQNATVRDNILFGQTYDRKRYNKVIDAC 747
Query: 697 ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA 756
AL DI+ GDLTEIG++G+NLSGGQKQRI LARAVY+DAD+YL DDP SAVDAH
Sbjct: 748 ALRADIDILSAGDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGK 807
Query: 757 TLFNECV--MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814
+F E + L +K+ +LVTH V FL +VD I V++ G+I++SG + +L+ AF
Sbjct: 808 HIFEEVIGPKGILARKSRVLVTHGVTFLPQVDSIYVIKMGEISESGTFDQLVKNKGAFAD 867
Query: 815 LVNAH 819
+ H
Sbjct: 868 FIIQH 872
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8LGU1 | AB8C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.6451 | 0.9654 | 0.8975 | yes | no |
| P39109 | YCFI_YEAST | No assigned EC number | 0.3062 | 0.9493 | 0.8528 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00034196001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (1456 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00002277001 | SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (129 aa) | • | 0.481 | ||||||||
| GSVIVG00002276001 | SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (81 aa) | • | 0.481 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1361 | |||
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-116 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-107 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-76 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-66 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-57 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-55 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-55 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-53 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-50 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-49 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-45 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-43 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-41 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-41 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-40 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-40 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-39 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-38 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 5e-38 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 6e-38 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-37 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-37 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-36 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-36 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-35 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-34 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-32 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 7e-32 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-31 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-31 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-30 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-29 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 7e-29 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 9e-29 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-28 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-28 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 8e-28 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 8e-28 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-27 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-27 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-27 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 8e-27 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 9e-27 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-26 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-26 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 6e-26 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-26 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 7e-26 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-25 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-25 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-25 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-25 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-25 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-25 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 7e-25 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-24 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-24 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-24 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-24 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 8e-24 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-23 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-22 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-22 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 3e-22 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-22 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-22 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-22 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 7e-22 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-21 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-21 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-21 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-21 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-21 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-21 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 5e-21 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 7e-21 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 9e-21 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 9e-21 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-20 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-20 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-20 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-20 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 8e-20 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-19 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-19 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-19 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-19 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-19 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-19 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-19 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 9e-19 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-18 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-18 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-18 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-18 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-18 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-18 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-18 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 6e-18 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-18 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-18 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-17 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-17 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-17 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-17 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-17 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 5e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-17 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-17 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-17 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 8e-17 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-16 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-16 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-16 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-16 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 3e-16 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-16 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-16 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-16 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-16 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 6e-16 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 6e-16 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 6e-16 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 7e-16 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 8e-16 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 9e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-15 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-15 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-15 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-15 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-15 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-15 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-15 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-15 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-15 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 4e-15 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-15 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-15 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 5e-15 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 5e-15 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 5e-15 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-15 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 6e-15 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 7e-15 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 8e-15 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-14 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-14 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-14 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-14 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-14 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-14 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-14 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-14 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-14 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-14 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 4e-14 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-14 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-14 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-14 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-14 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-14 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-14 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 6e-14 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 6e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 9e-14 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 9e-14 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 9e-14 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-13 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-13 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-13 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-13 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-13 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-13 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-13 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-13 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 3e-13 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-13 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-13 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 8e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-12 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-12 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-12 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-12 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-12 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-12 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-12 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-12 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-12 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-12 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-12 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-12 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-12 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 4e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 5e-12 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 5e-12 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-12 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 6e-12 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-12 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 7e-12 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 8e-12 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 9e-12 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-11 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-11 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-11 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-11 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-11 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-11 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-11 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-11 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 3e-11 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-11 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 3e-11 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-11 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-11 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-11 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 4e-11 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-11 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-11 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-11 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 6e-11 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 6e-11 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 8e-11 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 8e-11 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 8e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 9e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 9e-11 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-10 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-10 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-10 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-10 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-10 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-10 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-10 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-10 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-10 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-10 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-10 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-10 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-10 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-10 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-10 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-10 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-10 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-10 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-10 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 5e-10 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 6e-10 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 6e-10 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 7e-10 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 7e-10 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 7e-10 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 8e-10 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 9e-10 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 9e-10 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-09 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-09 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-09 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-09 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-09 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 1e-09 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-09 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-09 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-09 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-09 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-09 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-09 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-09 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-09 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-09 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-09 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-09 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 5e-09 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 5e-09 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 5e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 6e-09 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 7e-09 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 9e-09 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 9e-09 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-08 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-08 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-08 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-08 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-08 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-08 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-08 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-08 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-08 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 5e-08 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-08 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 6e-08 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 7e-08 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 8e-08 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 8e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 8e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 8e-08 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-07 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-07 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-07 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 1e-07 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-07 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-07 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-07 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-07 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-07 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-07 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-07 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-07 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-07 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-07 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-07 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 6e-07 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 6e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 6e-07 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 6e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-07 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 8e-07 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 8e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 9e-07 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 9e-07 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 9e-07 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 9e-07 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-06 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-06 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-06 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-06 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-06 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-06 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-06 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 3e-06 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-06 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-06 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-06 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-06 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 4e-06 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-06 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-06 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-06 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 7e-06 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-06 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 9e-06 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-05 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-05 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-05 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-05 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-05 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-05 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-05 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 3e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-05 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 3e-05 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-05 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-05 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-05 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-05 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 5e-05 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-05 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 6e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 6e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 7e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 7e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 7e-05 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 7e-05 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 7e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 9e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 9e-05 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 9e-05 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-04 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-04 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-04 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-04 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-04 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-04 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-04 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-04 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-04 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 3e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 3e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 4e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-04 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-04 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 5e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 5e-04 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-04 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-04 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 7e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 8e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 8e-04 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 9e-04 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 9e-04 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 9e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 9e-04 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 0.001 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 0.001 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 0.001 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.001 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 0.001 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 0.001 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 0.001 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 0.002 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 0.002 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 0.002 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 0.002 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 0.002 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 0.002 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.002 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.002 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.002 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 0.002 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.002 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.002 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 0.002 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 0.003 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 0.003 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 0.003 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 0.003 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 0.003 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 0.003 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.003 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 0.004 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.004 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.004 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 0.004 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 672 bits (1734), Expect = 0.0
Identities = 420/1342 (31%), Positives = 677/1342 (50%), Gaps = 107/1342 (7%)
Query: 75 VVGIAYLGYCLWNLIAKNDSSMSWLVS-TVRGLIWVSLAISLLVKRSKWIR---MLITLW 130
+V A L Y W + +LVS T+ G+ + + ++R K ++ +++T W
Sbjct: 77 IVCWADLFYSFWERSHGRAPAPVFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFW 136
Query: 131 WMSF--------SLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPNR 182
++ S ++LAL + + + YI V L+ S F + S S
Sbjct: 137 LVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFALVLSQLVLSCFSDKSPLFSETN 196
Query: 183 EDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASF 242
D N A L ++TF WI + GY +PL D+ SL ED +
Sbjct: 197 HDP----------NPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEM 246
Query: 243 AYQKFAYAW-------------------DSLVRENNSNNNGN------LVR--------- 268
W D + +S + N +V+
Sbjct: 247 VVPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPS 306
Query: 269 --KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLII 326
KV+ + + + + + +GP +L + + N +G G L +
Sbjct: 307 LFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFV 366
Query: 327 TKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAY 386
+++ F SGMR+++A+M AVY+K L +++ RK + GEIVN ++VDA
Sbjct: 367 CACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQ 426
Query: 387 RMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQS 446
R + + ++ WS LQ+ LA+ L+ +G L G+ + ++ LN A + Q
Sbjct: 427 RFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQV 486
Query: 447 EFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVI 506
M ++D R++ +EILN +K++KL +WE F +E R++E K L ++ A GT
Sbjct: 487 AHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFT 546
Query: 507 YWMSPTIISSVIF-LGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVS 565
+ +P +++ + F + + + L+A F LA + P+ ++P +S ++Q VS
Sbjct: 547 WVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVS 606
Query: 566 FDRINAFLLDHELNNDDVRRISLQKSD-RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQ 624
R+ FL EL D + R +++ + S+ + F+W +L PTL G+ I
Sbjct: 607 LKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLP-PTLNGITFSIPEGA 665
Query: 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPM 684
+AV G VG GKSSLL A+L E+ K+ G V++ GS+AYV Q +WIQ+ S+R+NIL+GK +
Sbjct: 666 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKAL 725
Query: 685 DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
++ Y + ++ACAL D+ GD TEIG++G+NLSGGQKQR+ LARAVY++ADIYLFD
Sbjct: 726 NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD 785
Query: 745 DPFSAVDAHTAATLFNECV--MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802
DP SAVDAH +F + L+ KT ILVTH + +L +VD I+V+ GG+I++ G+Y
Sbjct: 786 DPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSY 845
Query: 803 QELLLAGTAFEQLVNAHRDAITGLGPLDN--AGQGGAEK----VEKG------------- 843
QELL AF + + + D+ A G K +E G
Sbjct: 846 QELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQR 905
Query: 844 RTARPEEPNGIYPRKESSEGEISVKGLTQ----LTEDEEMEIGDVGWKPFMDYLNVSKGM 899
+ + +G R S E+ + L E ++ + G V + DY+
Sbjct: 906 QLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIG-- 963
Query: 900 SLLCLGVLAQSGFVGLQAAA---TYWLAYAIQIPKITS-----GILIGVYA--GVSTASA 949
L + L+ FV +A YWL+ P + + + VY G+ A
Sbjct: 964 --LFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFA 1021
Query: 950 VFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDI 1009
VF Y S + G++AS+ ++ ++PM FF+ TP G ++ R S +L +D I
Sbjct: 1022 VFGY--SMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMI 1079
Query: 1010 PFSI-VFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGT 1068
P I +F+ + + A+I I+ +++ ++ FVQR+Y+A++R+L R+
Sbjct: 1080 PPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYF-FVQRFYVASSRQLKRLESV 1138
Query: 1069 TKAPVMNYTAETSQGVVTIRAFNMVDRF-FQNYLKLVDIDASLFFHTNGVMEWLILRVEA 1127
+++PV ++ ET GV IRAF +RF Q+ LK VD + ++ + WL +R+E
Sbjct: 1139 SRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLK-VDENQKAYYPSIVANRWLAVRLEC 1197
Query: 1128 LQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERI 1187
+ N + AALF V I R ++ GLVGLS+SY+ +T +L R + I++VER+
Sbjct: 1198 VGNCIVLFAALFAV-ISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERL 1256
Query: 1188 KQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVG 1247
K++ E P +++ PPS WP +GR+E R +RYR + LVL+ I T G +VG
Sbjct: 1257 KEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVG 1316
Query: 1248 VVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSV 1307
+VGRTG+GK++L LFR+ E A G I+IDG++I +GL DLR K++IIPQ+P LF GS+
Sbjct: 1317 IVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSL 1376
Query: 1308 RTNLDPLGLYSDDEIWKVSQLT 1329
R NLDP YSD+E+W +L
Sbjct: 1377 RMNLDPFSQYSDEEVWWALELA 1398
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 667 bits (1722), Expect = 0.0
Identities = 428/1377 (31%), Positives = 691/1377 (50%), Gaps = 115/1377 (8%)
Query: 13 WTCEGEFDLGSF--C-IQSTIIDVINLV--FFCVFYLSLLVGSFR-KNHNYGRIRRECVS 66
W + + G++ C S +I++ +LV C++ + L+ + +
Sbjct: 18 WAKKVDNAFGAYTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFL 77
Query: 67 IVVSACCAVVGIAYLGYCLWNLIAKNDSSMS--WLVS-TVRGLIWVSLAISLLVKRSKWI 123
+++A C + L + L +S+ +VS V L W S+ + + V+ +I
Sbjct: 78 ALLAAYCTAEPLFRLVMGISVLNLDGQTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYI 137
Query: 124 RMLITLWWMSFSLLVL------ALNIEILARTY---TINVVYILPLPVNLL---LLFSAF 171
R W++ F+++ + LN+ + + Y + +YI + +L LL F
Sbjct: 138 REFR--WYVRFAVIYVLVGDAVMLNLVLSVKEYYSSFVLYLYISEVAAQVLFGILLLVYF 195
Query: 172 RNFSHFT--SPNREDKSLS---EPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPL 226
N + +P + E L + A + ++ F W+ PL+ LGY +PL
Sbjct: 196 PNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPL 255
Query: 227 ALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIA-IC 285
+D+ L D+ Y+ F WD E L+R + N L ++
Sbjct: 256 TEKDVWKLDTWDQTETLYRSFQKCWD----EELKKPKPWLLRAL--NNSLGGRFWLGGFF 309
Query: 286 ALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLS-----IVGCLIITKVVESFTQRHCFF 340
+ ++ VGPLLL N E++Q G I I VV +F
Sbjct: 310 KIGNDLSQFVGPLLL-------NLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQYF 362
Query: 341 GS-RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTW 399
+ R G R+RS L+ AV++K L+L+ GRKK ++G+I N + DA + + H W
Sbjct: 363 QNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHTLW 422
Query: 400 SLALQLFLAIGVLFGVVGLGALPG-LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRS 458
S ++ +A+ +L+ +G+ +L G L+L L+ + +K +QK E + D+R+
Sbjct: 423 SAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISK-MQKLTKEGLQRTDKRIGL 481
Query: 459 TSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVI 518
+E+L M +K +WE F+S +++ R+ E W +AQL A+ + I P +++ V
Sbjct: 482 MNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVS 541
Query: 519 F-----LGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573
F LG LT P A T ++ A LR P+ M+P ++ + VS R+ L
Sbjct: 542 FGVFTLLGGDLT---PARAFTSLSLFAVLRF---PLFMLPNLITQAVNANVSLKRLEELL 595
Query: 574 LDHELNNDDVRRI-----SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAV 628
L E R+ L+ ++ I+ G FSWD + PTL +NLD+ +A+
Sbjct: 596 LAEE-------RVLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAI 648
Query: 629 CGSVGAGKSSLLYAILGEIPKIS-GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKA 687
GS G GK+SL+ A+LGE+P S +V + G++AYV Q SWI + ++RDNIL+G P D
Sbjct: 649 VGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPE 708
Query: 688 RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF 747
RY++AI AL D++ GDLTEIG+RG+N+SGGQKQR+ +ARAVY+++D+Y+FDDP
Sbjct: 709 RYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPL 768
Query: 748 SAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807
SA+DAH +F++C+ L KT +LVT+Q+ FLS+VDRI+++ G I + G Y+EL
Sbjct: 769 SALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828
Query: 808 AGTAFEQLV-NAHRDAITGLGPLDNAGQGGAEKVEKGRTARP---EEPNGIYPRKESSEG 863
G F++L+ NA G ++ + E+ + +++P N + +K+SS
Sbjct: 829 NGPLFQKLMENA--------GKMEEYVEENGEEEDDQTSSKPVANGNANNL--KKDSSSK 878
Query: 864 EISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKG----MSLLCLGVLAQSGFVGLQAAA 919
+ S +G + L + EE E G V WK Y N G M L VL + + ++
Sbjct: 879 KKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEV----FRVSS 934
Query: 920 TYWLAYAIQ--IPKITS-GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTN 976
+ WL+ PK +YA +S + S++ L A+K
Sbjct: 935 STWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLG 994
Query: 977 SIFKAPMLFFDSTPVGRILTRLSSDLSILDFDI-PFSIVFVAASGTELL---AIIGIM-T 1031
SI +APM FF + P+GRI+ R + DL +D ++ F +F+ +LL +IGI+ T
Sbjct: 995 SILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFL-GQIFQLLSTFVLIGIVST 1053
Query: 1032 FVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFN 1091
W ++ + + A YY +TARE+ R++ T++PV E G+ TIRA+
Sbjct: 1054 ISLWAIMPLLVLFYGAY----LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 1109
Query: 1092 MVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVL-----IPRG 1146
DR + + +D + WL +R+E L L ++ A F V+ +
Sbjct: 1110 AYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQA 1169
Query: 1147 YVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRP 1206
A +GL LSYA +T + R N + +VER+ ++ +P E P ++E+ RP
Sbjct: 1170 AFAS-TMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRP 1228
Query: 1207 PSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL 1266
P WP G I+ + +RYRP P VL G++ S +VG+VGRTG+GK+++++ALFR+
Sbjct: 1229 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRI 1288
Query: 1267 VEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIW 1323
VE G ILIDG DI GL DLR L IIPQ P LF G+VR NLDP ++D ++W
Sbjct: 1289 VELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLW 1345
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 603 bits (1556), Expect = 0.0
Identities = 402/1372 (29%), Positives = 670/1372 (48%), Gaps = 110/1372 (8%)
Query: 14 TCEGEFDLGSFC-IQSTIIDVINLVFF--CVFYLSLLVGSFRKNHNYGRIRRECVSIVVS 70
T +G F + C I S ++ V + V C + + +++ + + R + + +
Sbjct: 21 TVDGAFGAYTPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGIL 80
Query: 71 ACCAVVGIAY---LGYCLWNLIAKNDSSMSWLVS-TVRGLIWVSLAISLLVKRSKWIRML 126
AC VV +G L+++ + D + S V W S+ + + ++ ++++
Sbjct: 81 ACYCVVEPVLRLVMGISLFDMDEETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYVKEF 140
Query: 127 ITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVN--LLLLFSAFRNFS--------- 175
W++ F ++ + ++A +++V L +N L L + R
Sbjct: 141 --RWYVRFGVVYV-----LVADAVLLDLVLPLKNSINRTALYLCISSRCCQALFGILLLV 193
Query: 176 -----------HFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSK 224
H + D + L +N A + ++ FSW+ PL+ LGY K
Sbjct: 194 YIPELDPYPGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRK 253
Query: 225 PLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIA- 283
P+ +D+ L D+ ++F W E + L+R + N L ++
Sbjct: 254 PITEKDVWQLDQWDQTETLIKRFQRCW----TEESRRPKPWLLRAL--NNSLGGRFWLGG 307
Query: 284 ICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSR 343
I + ++ VGP++L + G+ G + + F
Sbjct: 308 IFKIGHDLSQFVGPVILSHLLQSMQEGDPAWV-GYVYAFLIFFGVTFGVLCESQYFQNVG 366
Query: 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLAL 403
R G R+RS L+ A++ K L+L+ RK ++G++ N I DA + + H WS
Sbjct: 367 RVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPF 426
Query: 404 QLFLAIGVLFGVVGLGALPG-LVLFLICGLLNVPFAKIL----QKCQSEFMIAQDERLRS 458
++ +++ +L+ +G+ +L G L+LFL+ +P ++ +K E + D+R+
Sbjct: 427 RIIVSMVLLYQQLGVASLFGSLILFLL-----IPLQTLIVRKMRKLTKEGLQWTDKRVGI 481
Query: 459 TSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVI 518
+EIL +M +K +WE+ F+S I+ R +E W +AQL A+ + I P +++ V
Sbjct: 482 INEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVS 541
Query: 519 F-----LGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573
F LG LT P A T ++ A LRS P+ M+P LS ++ VS RI L
Sbjct: 542 FGVFVLLGGDLT---PARAFTSLSLFAVLRS---PLNMLPNLLSQVVNANVSLQRIEELL 595
Query: 574 LDHELNNDDVRRI-----SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAV 628
L E RI LQ ++ I+ G FSWD + + PTL +NL+I +A+
Sbjct: 596 LSEE-------RILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAI 648
Query: 629 CGSVGAGKSSLLYAILGEIPKISGT-VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKA 687
G G GK+SL+ A+LGE+ + V + GS+AYV Q SWI + ++R+NIL+G +
Sbjct: 649 VGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESE 708
Query: 688 RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF 747
RY +AI AL D++ DLTEIG+RG+N+SGGQKQR+ +ARAVY+++DIY+FDDP
Sbjct: 709 RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPL 768
Query: 748 SAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807
SA+DAH A +F+ C+ L+ KT +LVT+Q+ FL +DRI+++ G I + G + EL
Sbjct: 769 SALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828
Query: 808 AGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEE--PNGIYPRKESSEGEI 865
+G+ F++L ++NAG+ A + + P E + G
Sbjct: 829 SGSLFKKL-------------MENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGST 875
Query: 866 --SVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWL 923
+G + L + EE E G + W M Y G+ ++ + ++ L+ +++ WL
Sbjct: 876 KQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWL 935
Query: 924 AYAIQIPKITS---GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFK 980
+ S G I VYA + + SF+ L A+K NSI +
Sbjct: 936 SIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILR 995
Query: 981 APMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELL---AIIGIMTFVT-WQ 1036
APMLFF + P GR++ R S D+ +D ++ + +LL A+IG ++ ++ W
Sbjct: 996 APMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWA 1055
Query: 1037 VLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096
++ + I A YY +T+RE+ R++ T++P+ E G+ +IRA+ DR
Sbjct: 1056 IMPLLILFYAAY----LYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRM 1111
Query: 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVL----IPRGYVAPGL 1152
+ K +D + WL +R+E L + ++ A F VL
Sbjct: 1112 AKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFAST 1171
Query: 1153 VGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPF 1212
+GL LSY +T + R N + SVER+ ++ +P E AI+E+ RP S WP
Sbjct: 1172 MGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPS 1231
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
+G I+ + +RYRP P VL G++ S +VGVVGRTG+GK+++++ALFR+VE G
Sbjct: 1232 RGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKG 1291
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWK 1324
I+ID D+ GL DLR LSIIPQ P LF G+VR N+DP ++D ++W+
Sbjct: 1292 RIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWE 1343
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 399 bits (1027), Expect = e-116
Identities = 234/754 (31%), Positives = 364/754 (48%), Gaps = 46/754 (6%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
LR V++ + + V G+ G+GKS+LL ++L + G V SIAYV Q +WI +
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNA 735
Query: 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732
++R NIL+ D AR A++ L+ D+ G TEIG++G+NLSGGQK R+ LAR
Sbjct: 736 TVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLAR 795
Query: 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792
AVY + D+YL DDP SA+DAH + EC + AL KT +L THQV + D ++ L
Sbjct: 796 AVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALG 855
Query: 793 GGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPN 852
G++ SG+ + + + + L ++ +A + G EP
Sbjct: 856 DGRVEFSGSSAD-FMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVD--HEPP 912
Query: 853 GIYPRKESSEGEISVKGLT--QLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQS 910
+ G+ + +L EE G V W ++ YL G+ VLA
Sbjct: 913 VAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGL-HAAGFVLATF 971
Query: 911 GFVGL-QAAATYWLA-YAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASK 968
L ++ WL+ ++ + K+++ + VY G+ V R F + + S+
Sbjct: 972 AVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSR 1031
Query: 969 AFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIG 1028
S+ + M FFD+TP+GRIL R S D+ ILD +P S +++ + + I
Sbjct: 1032 NMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSIL 1091
Query: 1029 IMTFVTWQVLVVAIFAMVAVRFV----QRYYIATARELIRINGTTKAPVMNYTAETSQGV 1084
+ + Q V + A+V ++ ++Y + RE+ RI K+PV E QG
Sbjct: 1092 VTSAS--QPFV--LVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGS 1147
Query: 1085 VTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV--- 1141
TI A+ Q L+ +D+ S + N WL +RVE L N+ + AL V
Sbjct: 1148 ATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGT 1207
Query: 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH-IP----PE 1196
++ GLV LSL+ A T T +L R + + SVER+ + +P PE
Sbjct: 1208 MLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPE 1267
Query: 1197 PPAIV-------------------EDKRPPSSWPF---KGRIELRQLKIRYRPNAPLVLK 1234
V E P S+ P G + +++RYR PLVL+
Sbjct: 1268 LDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLR 1327
Query: 1235 GITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294
G++ + +VG+VGRTGSGK+TL+ R+VE GG I ++G +I + GL++LR + S
Sbjct: 1328 GVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387
Query: 1295 IIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQL 1328
+IPQ+P LF G+VR N+DP S E+W +L
Sbjct: 1388 MIPQDPVLFDGTVRQNVDPFLEASSAEVWAALEL 1421
|
Length = 1560 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 335 bits (863), Expect = e-107
Identities = 112/204 (54%), Positives = 153/204 (75%), Gaps = 3/204 (1%)
Query: 595 VKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652
+ +++ +F+WD TL+ +NL++ + +A+ G VG+GKSSLL A+LGE+ K+SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 653 TVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+V++ GSIAYVSQ WIQ+G+IR+NIL+GKP D+ RY+K IKACAL+ D+ GDLTE
Sbjct: 61 SVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTE 120
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKT 771
IG++G+NLSGGQKQRI LARAVY+DADIYL DDP SAVDAH +F C++ L KT
Sbjct: 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT 180
Query: 772 VILVTHQVEFLSEVDRILVLEGGQ 795
ILVTHQ++ L D+I+VL+ G+
Sbjct: 181 RILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 278 bits (712), Expect = 3e-76
Identities = 199/673 (29%), Positives = 310/673 (46%), Gaps = 59/673 (8%)
Query: 197 QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVR 256
++ + KA L KL F W P+L GY + L L DI + D A ++ WD R
Sbjct: 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWD---R 59
Query: 257 E-NNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLL---YAFVNYSNRGEE 312
E ++ N L+ + + +F I V PLLL A + N E
Sbjct: 60 ELASAKKNPKLLN-ALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPER 118
Query: 313 NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKH 372
+ L++ CL+ +V + FG GM+MR AL +Y+K LKLSS K
Sbjct: 119 EIAYYLALGLCLLF--IVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKI 176
Query: 373 STGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGL 432
STG++V+ ++ + + E H W LQ+ L +G+++ ++ + GL ++ L
Sbjct: 177 STGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLAL 236
Query: 433 LNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKW 492
+ + + + ERL TSEI+ N++ +K WEE + +I++ R+ E K
Sbjct: 237 FQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKL 296
Query: 493 LSEAQLRKAYGTVIYWMSP-----------------------TIISSVIFLGCALTGSAP 529
+ + + + ++ S T IS I L +T P
Sbjct: 297 TRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKGIILRRIFTTISYCIVLRMTVTRQFP 356
Query: 530 LNASTIFTVLATLRSM-----GEPVRMIPEALS----IMIQVKVSFDRINAFLLDHELNN 580
T + L + + E + + L+ M+ V S+D L + N
Sbjct: 357 GAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKIKQN 416
Query: 581 DDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL 640
+ R+ D + NFS P L+ ++ ++ Q +AV GS G+GKSSLL
Sbjct: 417 NKARKQP--NGDDGLFFS--NFSL---YVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLL 469
Query: 641 YAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700
I+GE+ G + G I++ QTSWI G+I+DNI++G D+ RY IKAC L++
Sbjct: 470 MMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEE 529
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
DI F D T +G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF+ +D T +F
Sbjct: 530 DIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFE 589
Query: 761 ECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL----------LLAGT 810
C+ + KT ILVT ++E L + D+IL+L G G + EL LL
Sbjct: 590 SCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLE 649
Query: 811 AFEQLVNAHRDAI 823
AF+ R++I
Sbjct: 650 AFDNFSAERRNSI 662
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 2e-66
Identities = 137/570 (24%), Positives = 267/570 (46%), Gaps = 24/570 (4%)
Query: 265 NLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCL 324
+L+R+++ + K + + LL + ++ PLL+ ++ L E L ++ L
Sbjct: 2 SLLRRLLKYLKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLL 61
Query: 325 IITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVD 384
+ V Q + R G ++ + L +++K L+L K +G++++ + D
Sbjct: 62 ALLGGVLRALQ---SYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTND 118
Query: 385 AYRMGE-FPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQK 443
+ L ++ L L ++ +LF + AL L++ + L+ A+ +K
Sbjct: 119 VEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRK 178
Query: 444 CQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFK-WLSEAQLRKAY 502
A E E L+ +++IK E++ E E+ + L ++L
Sbjct: 179 LSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALL 238
Query: 503 GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQV 562
++ +S V+ LG L S L + + L + P+ + E +S++ +
Sbjct: 239 APLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRA 298
Query: 563 KVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKW 622
+ +R+ LLD E +D L+ + S++ + +FS+ + P L+ ++ I+
Sbjct: 299 SAAAERLFE-LLDEEPEVED-PPDPLKDTIGSIEFENVSFSYPGK--KPVLKDISFSIEP 354
Query: 623 AQKIAVCGSVGAGKSSLLYAILGEIPKISGTV-------------NLYGSIAYVSQTSWI 669
+K+A+ G G+GKS+L+ +L SG + +L I VSQ +
Sbjct: 355 GEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414
Query: 670 QSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728
SG+IR+NI G+P ++A+K + I N G T +G+RG+NLSGGQ+QR+
Sbjct: 415 FSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRL 474
Query: 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRI 788
+ARA+ + I + D+ SA+D T A + + + L+ +T +++ H++ + DRI
Sbjct: 475 AIARALLRNPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLSTIKNADRI 533
Query: 789 LVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
+VL+ G+I + G ++ELL G + +L A
Sbjct: 534 IVLDNGRIVERGTHEELLAKGGLYARLYQA 563
|
Length = 567 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 1e-57
Identities = 94/232 (40%), Positives = 134/232 (57%), Gaps = 10/232 (4%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA 661
FS + P L+ +NL I+ + +A+ GS G+GK+SLL ILGE+ G + G I+
Sbjct: 42 FSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRIS 101
Query: 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721
+ SQ SWI G+I++NI++G D+ RY +KAC L++DI F D T +G+ G+ LS
Sbjct: 102 FSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLS 161
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781
GGQ+ RI LARAVY DAD+YL D PF +D T +F CV + KT ILVT ++E
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEH 221
Query: 782 LSEVDRILVLEGGQITQSGNYQEL----------LLAGTAFEQLVNAHRDAI 823
L + D+IL+L G G + EL L+ F+Q R++I
Sbjct: 222 LKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFSAERRNSI 273
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 1e-55
Identities = 102/432 (23%), Positives = 180/432 (41%), Gaps = 13/432 (3%)
Query: 904 LGVLAQSGFVGLQAAATYWLAYAIQIPKITSGI---LIGVYAGVSTASAVFVYFRSFFAA 960
L +L L + I G L+ + ++ V +S+ +
Sbjct: 18 LAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGS 77
Query: 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020
LG K + + P+ FFD G +++RL++D+ + + +V V S
Sbjct: 78 RLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSI 137
Query: 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAET 1080
L+ + ++ ++W++ ++ + + + V +R+L R + E+
Sbjct: 138 LLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLES 197
Query: 1081 SQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF- 1139
G+ I+AF DR + + + + + + L + L +L
Sbjct: 198 LSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALG 257
Query: 1140 LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199
L+ G + G + + Y L + L L + ER+ + + PE
Sbjct: 258 GFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPE--- 314
Query: 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259
VED P G IE + Y P VLK I+ + G +V +VG +GSGK+TL
Sbjct: 315 -VED-PPDPLKDTIGSIEFENVSFSYPGKKP-VLKDISFSIEPGEKVAIVGPSGSGKSTL 371
Query: 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL--Y 1317
I L RL +P G ILIDG+DI + L LR ++ I+ Q+P LF G++R N+ LG
Sbjct: 372 IKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIA-LGRPDA 430
Query: 1318 SDDEIWKVSQLT 1329
+D+EI + +L
Sbjct: 431 TDEEIEEALKLA 442
|
Length = 567 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 1e-55
Identities = 67/112 (59%), Positives = 88/112 (78%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
G IE + + +RYRPN P VLK I+ + G +VG+VGRTGSGK++L+ ALFRLVE + GS
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKV 1325
ILIDGVDI +GL DLR ++SIIPQ+P LF G++R+NLDP G YSD+E+W+
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQA 112
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 185 bits (470), Expect = 4e-53
Identities = 87/219 (39%), Positives = 128/219 (58%), Gaps = 21/219 (9%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
V++ G FSW L TL +N+ I Q + G VG GKSSLL AILGE+ + G V
Sbjct: 1 VQVTNGYFSWGSGL--ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 655 NL-----------------YGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACA 697
+ S+AY +Q W+ + ++ +NI +G P +K RY AC+
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACS 118
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
L DI+ GD TEIG+RG+NLSGGQ+QRI +ARA+Y + +I DDPFSA+D H +
Sbjct: 119 LQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 758 LFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGG 794
L E ++ L +K+T++LVTH++++L D I+ ++ G
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 2e-50
Identities = 137/572 (23%), Positives = 246/572 (43%), Gaps = 56/572 (9%)
Query: 279 NIFIAICALLRTIAVVVGPLLLYAFVNY--SNRGEENLQEGLSIVGCLIITKVVESFTQR 336
+ +A +LL + + PL ++ + L + + + + +
Sbjct: 158 EVLLA--SLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRT 215
Query: 337 HCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEF----P 392
+ G R+ L ++ L+L +K S GEI++ R+ E
Sbjct: 216 YLIA---HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIIS-------RVRELEQIRE 265
Query: 393 FWFHLTWSLALQLFLAIGVLFGVVGLG---------ALPGLVLFLICGLLNVPFAKILQK 443
F LT L L + + LF ++ L L L + L+ + F +L++
Sbjct: 266 F---LT-GSILTLIIDL--LFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRR 319
Query: 444 CQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG 503
+ + E+ E + ++ +K + E +F+S ++R K+ + K
Sbjct: 320 KTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNI--GFKTEKLAL 377
Query: 504 TVIYWMSP-TIISSVI--FLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMI 560
+ S +SSV+ + G L L + P+ + + +
Sbjct: 378 ILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQ 437
Query: 561 QVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620
Q KV+ +R+ L D I L K ++ + +F + P+ P L ++L+I
Sbjct: 438 QAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEI 496
Query: 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTS 667
+K+A+ G G+GKS+LL +LG G + L G + YV Q
Sbjct: 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDP 556
Query: 668 WIQSGSIRDNILYGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725
++ SGSIR+NI G P D+ + A A A + I N G T +G+ G NLSGGQ+
Sbjct: 557 FLFSGSIRENIALGNPEATDEEIIEAAQLAGAHE-FIENLPMGYDTPVGEGGANLSGGQR 615
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV 785
QR+ LARA+ + I L D+ SA+D T A + + ++ L+ +TVI++ H++ +
Sbjct: 616 QRLALARALLSKPKILLLDEATSALDPETEA-IILQNLLQILQGRTVIIIAHRLSTIRSA 674
Query: 786 DRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
DRI+VL+ G+I + G+++ELL G + +L
Sbjct: 675 DRIIVLDQGKIVEQGSHEELLAQGGLYARLYQ 706
|
Length = 709 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 7e-49
Identities = 126/518 (24%), Positives = 241/518 (46%), Gaps = 47/518 (9%)
Query: 854 IYPRKESSEG------EISVKGLTQLTEDEEMEIGDV-GWKPFMDYLNVSKGMS---LLC 903
IY R+ S + EI+ + L + DE + + W ++ Y+ ++ + + C
Sbjct: 814 IYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFC 873
Query: 904 LGVLA---QSGFVGL-----------------QAAATYWLAYAIQIPKITSGILIGVYAG 943
L + + +GL A++ + + I ++ + +Y G
Sbjct: 874 LVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVG 933
Query: 944 VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLS 1003
+ + +FR H L SK +S+ +APM ++ GRIL R + D++
Sbjct: 934 TADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMA 993
Query: 1004 ILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELI 1063
I+D +P ++ +L I +++ + + + AI V ++ Y++ T+++L
Sbjct: 994 IIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLK 1053
Query: 1064 RINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLIL 1123
++ ++P+ ++ + +G+ TIRAF F + K +++ + +F + W +
Sbjct: 1054 QLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQM 1113
Query: 1124 RVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIIS 1183
R++ + F A F+ + G VG+ L+ A + T + + + S
Sbjct: 1114 RIDIIFVF-FFIAVTFIAIGTNQ-DGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRS 1171
Query: 1184 VERIKQFMHIPPEPPA--------------IVEDKRPPSSWPFKGRIELRQLKIRYRPNA 1229
V R+ +F+ +P E P ++E+ WP G+++++ L +Y
Sbjct: 1172 VSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAG 1231
Query: 1230 PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL 1289
VL+ ++ + G RVG++GRTGSGK+TL+SAL RL+ G I IDGV S+ L+
Sbjct: 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW 1290
Query: 1290 RVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQ 1327
R +IPQ+ +F G+ R NLDP +SD+EIWKV++
Sbjct: 1291 RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAE 1328
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 1e-45
Identities = 61/116 (52%), Positives = 83/116 (71%)
Query: 1210 WPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP 1269
WP G IE+ L +RY P+ P VLK ++ G ++G+VGRTG+GK+TLI ALFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1270 AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKV 1325
G I IDG+DI ++ L+DLR L+IIPQ+PTLF G++R+NLDP YSD+EI+
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGA 116
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 167 bits (426), Expect = 1e-43
Identities = 139/581 (23%), Positives = 233/581 (40%), Gaps = 69/581 (11%)
Query: 282 IAICALLRTIAVVVGPLLL-YAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFF 340
A+ A+L IA++ LL + Q L ++ L+I V+ +F +
Sbjct: 5 SALLAVLSGIAIIAQAALLADILTKLIE--GQLFQSLLPLLILLLIALVLRAFLA---WL 59
Query: 341 GSR---RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIA-----VDAYRMGEFP 392
R R+ ++R++L V K KL + G ++ Y P
Sbjct: 60 RERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLP 119
Query: 393 FWFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFM 449
F + L + +AI ++ L P + LF+I L+ + +K S
Sbjct: 120 QMFLSAI-VPLLILIAIFFFNWAAALILLITAPLIPLFMI--LVGLAAKDASEKQFSALA 176
Query: 450 IAQD---ERLRSTSEILNNMKIIKL-QSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTV 505
+RLR L ++ ++ EE+ + E R+ L A L A
Sbjct: 177 RLSGHFLDRLRG----LETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEF 232
Query: 506 IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVL-------ATLRSMGEP--VRMIPEAL 556
+I +++G L G L VL LR +G EA
Sbjct: 233 F--AYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAA 290
Query: 557 SIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS--VKIQEGNFSWDPELAIPTLR 614
+ D++ L E + ++I N S+ P L
Sbjct: 291 A---------DKLFTLL---ESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALS 338
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV-------------NLYGSIA 661
+NL IK Q A+ G+ GAGKS+LL +LG + G + I+
Sbjct: 339 DLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398
Query: 662 YVSQTSWIQSGSIRDNILYGKPMD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720
+VSQ ++ +G+IR+NIL +P A+ L + + D D T IG+ G L
Sbjct: 399 WVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLD-TVIGEGGAGL 457
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE 780
SGGQ QR+ LARA+ + A + L D+P + +DA T + A ++KTV+++TH++E
Sbjct: 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELA-KQKTVLVITHRLE 516
Query: 781 FLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRD 821
++ DRI+VL+ G++ + G ++EL + L+
Sbjct: 517 DAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557
|
Length = 559 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 2e-41
Identities = 80/214 (37%), Positives = 120/214 (56%), Gaps = 16/214 (7%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658
+FS+ + IP L V+L I+ +K+A+ G VG+GKS+LL + G SG+V L G
Sbjct: 9 SFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTD 67
Query: 659 -----------SIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFD 706
+I YV Q + G++RDNI G P+ D R +A + + +N
Sbjct: 68 IRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHP 127
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+G +IG+RG LSGGQ+Q + LARA+ ND I L D+P SA+D ++ L E +
Sbjct: 128 NGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK-ERLRQL 186
Query: 767 LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
L KT+I++TH+ L VDRI+V++ G+I G
Sbjct: 187 LGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 3e-41
Identities = 118/499 (23%), Positives = 231/499 (46%), Gaps = 48/499 (9%)
Query: 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFL 407
R+ SAL V +++K LS ++ +G+++N + D + +AL L
Sbjct: 88 RVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIA 147
Query: 408 AIGVLFGVVGLGALPGLVLFLICGLLNVP--FAKILQKCQSEFMIAQDERLRS-TSEILN 464
+ + + L L L+ LL +P F + +K + + LRS ++ +
Sbjct: 148 VVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGR-AALRSQFTDWVQ 206
Query: 465 NMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSP------TIISSVI 518
+ + E+ + + E WL +AQ ++A T + +I ++
Sbjct: 207 GQAELLIFGAEDAY---RTALEATEASWL-KAQRKQARFTGLSDAILLLIAGLLVIGLLL 262
Query: 519 FLGCAL---TGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575
++ + + P A + + A L + EP+ P A + QV S R+N +LD
Sbjct: 263 WMAAQVGAGALAQPGAALALLVIFAALEAF-EPLA--PGAFQHLGQVIASARRLND-ILD 318
Query: 576 H----ELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGS 631
++ + ++++++ +F++ P L+ NL + +K+A+ G
Sbjct: 319 QKPEVTFPDEQTAT-----TGQALELRNVSFTY-PGQQTKALKNFNLTLAQGEKVAILGR 372
Query: 632 VGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNI 678
G+GKS+LL + G G++ L G +I+ ++Q + SG++RDN+
Sbjct: 373 SGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNL 432
Query: 679 LYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736
P D+ + A++ L+K + + G T +G+ G LSGG+++R+ LARA+ +
Sbjct: 433 RLANPDASDEELWA-ALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH 491
Query: 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796
DA ++L D+P +D T + + E KT+++VTH++ L +DRI+VL+ G+I
Sbjct: 492 DAPLWLLDEPTEGLDPITERQVL-ALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKI 550
Query: 797 TQSGNYQELLLAGTAFEQL 815
+ G + ELL +++L
Sbjct: 551 IEEGTHAELLANNGRYKRL 569
|
Length = 573 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 3e-40
Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 25/233 (10%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--------- 645
++ + NFS+D + P L+ +N IK + +A+ G GAGK++L+ ++
Sbjct: 3 IEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 646 --------EIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKAC 696
+I + S L I V Q +++ SG+I +NI G+P +A K
Sbjct: 61 LIDGIDIRDISRKS----LRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEA 116
Query: 697 ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA 756
I +G T +G+ G NLS G++Q + +ARA+ D I + D+ S +D T
Sbjct: 117 GAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK 176
Query: 757 TLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809
+ E + ++ +T I++ H++ + D+ILVL+ G+I + G + ELL
Sbjct: 177 LI-QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 6e-40
Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 56/214 (26%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
++ + +FS+ P L+ V+L IK +K+A+ G G+GKS+LL +L SG +
Sbjct: 1 IEFKNVSFSYPGRPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
+ G +IAYV Q ++ SG+IR+NIL
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL---------------------- 97
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
SGGQ+QRI +ARA+ D I + D+ SA+D T A L E
Sbjct: 98 -------------------SGGQRQRIAIARALLRDPPILILDEATSALDPETEA-LILE 137
Query: 762 CVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795
+ A + KTVI++ H++ + + DRI+VL+ G+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 4e-39
Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 23/224 (10%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGT----VNL---YGSIAYV 663
+N + Q+IA+ G GAGK+SLL A+LG +P KI+G ++ +++V
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 664 SQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722
Q + G++RDN+L G P + +A++ + + + G T IG + LS
Sbjct: 429 GQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV 488
Query: 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVILVTHQ 778
GQ QR+ LARA+ + L D+P +++DAH+ + VM AL +T ++VTHQ
Sbjct: 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSE-----QLVMQALNAASRRQTTLMVTHQ 543
Query: 779 VEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDA 822
+E L++ D+I V++ GQI Q G+Y EL AG F L AHR
Sbjct: 544 LEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATL-LAHRQE 586
|
Length = 588 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 3e-38
Identities = 77/240 (32%), Positives = 125/240 (52%), Gaps = 26/240 (10%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEI 647
V+ + F + + P LR ++LDI + +A+ G G+GKS+L+ I G I
Sbjct: 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 648 PKISGT-------VNLYGSIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALD 699
I G +L I VSQ ++ + ++ +NI YG+P + ++A +A
Sbjct: 60 -LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAH 118
Query: 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
+ I G T IG+RG+ LSGGQ+QRI +ARA+ D I + D+ SA+D +
Sbjct: 119 EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES----- 173
Query: 760 NECVMAALEK----KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
V AALE+ +T ++ H++ + DRI+VLE G+I + G ++ELL G + +L
Sbjct: 174 ERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 5e-38
Identities = 100/405 (24%), Positives = 181/405 (44%), Gaps = 48/405 (11%)
Query: 948 SAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDF 1007
A+ R++ AHLG + F + + P+ +F+ VG I++R+ I +F
Sbjct: 207 EALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVRELEQIREF 266
Query: 1008 ----------DIPFSIVFVAASGTELLAIIGIMTF-VTWQVLVVAIFAMVAVRFVQRYYI 1056
D+ F+++F LA++ + ++ +T VL ++ Q
Sbjct: 267 LTGSILTLIIDLLFALIF--------LAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLR 318
Query: 1057 ATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFF---H 1113
R+LI + ++ + ET +G+ T++A RF + + ++ F
Sbjct: 319 RKTRKLIEESAEQQS----FLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEK 374
Query: 1114 TNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPG-------LVGLSLSYAFTLTGT 1166
++ + ++ L ++ + LVL G + G L G +S L+
Sbjct: 375 LALILNTIKSLLQQLSSVLILWFGAILVL--EGELTLGQLVAFNMLAGYFISPITRLSQ- 431
Query: 1167 QVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYR 1226
+ + +++ER+ + PPE DK +G IE + RY
Sbjct: 432 --LWTDF----QQAKVALERLGDILDTPPEQE---GDKTLIHLPKLQGEIEFENVSFRYG 482
Query: 1227 PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL 1286
P+ P VL+ ++ G +V +VGR+GSGK+TL+ L L +P G IL+DGVD+ + L
Sbjct: 483 PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDL 542
Query: 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPLGL--YSDDEIWKVSQLT 1329
LR ++ + Q+P LF GS+R N+ LG +D+EI + +QL
Sbjct: 543 ASLRRQVGYVLQDPFLFSGSIRENIA-LGNPEATDEEIIEAAQLA 586
|
Length = 709 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 6e-38
Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 25/228 (10%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISG----TVNLY- 657
+P L+G++L I + +A+ GS G GKS+++ + GEI + G +NL
Sbjct: 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL-LDGVDIRDLNLRW 74
Query: 658 --GSIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIG 714
I VSQ + G+I +NI YGKP ++A K + I + G T +G
Sbjct: 75 LRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVG 134
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----K 770
+RG LSGGQKQRI +ARA+ + I L D+ SA+DA + V AL++ +
Sbjct: 135 ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL-----VQEALDRAMKGR 189
Query: 771 TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
T I++ H++ + D I VL+ GQ+ + G + EL+ + +LV A
Sbjct: 190 TTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKA 237
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 2e-37
Identities = 86/279 (30%), Positives = 141/279 (50%), Gaps = 19/279 (6%)
Query: 543 RSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNF 602
R++ P+ + L+ Q K + ++ L+ + + R L + +I+ N
Sbjct: 413 RALA-PLGQLAGLLTRYQQAKTALQSLDE-LMQLPVERPEGTRF-LHRPRLQGEIEFRNV 469
Query: 603 SWD-PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658
S+ P P L V+L I+ +K+A+ G +G+GKS+LL +LG G+V L G
Sbjct: 470 SFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDI 529
Query: 659 ----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDH 707
+I YV Q + G++RDNI G P D +A + + + +
Sbjct: 530 RQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPD 589
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
G +IG+RG +LSGGQ+Q + LARA+ D I L D+P SA+D + + F + + L
Sbjct: 590 GLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD-NRSEERFKDRLKRWL 648
Query: 768 EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
KT++LVTH+ L VDRI+V++ G+I G ++L
Sbjct: 649 AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVL 687
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-37
Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 21/230 (9%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISG-- 652
F++DP P L+ V+ I +K+A+ G G+GKS++L + G I I G
Sbjct: 8 FAYDPGR--PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI-LIDGQD 64
Query: 653 ----TVN-LYGSIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNF 705
T++ L +I V Q + + + +I NI YG+P D+ +A KA + I F
Sbjct: 65 IREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVI-EAAKAAQIHDKIMRF 123
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
G T +G+RGL LSGG+KQR+ +ARA+ + I L D+ SA+D HT + +
Sbjct: 124 PDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ-AALRD 182
Query: 766 ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+ +T I++ H++ + D+I+VL+ G+I + G ++ELL G + ++
Sbjct: 183 VSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 1e-36
Identities = 125/449 (27%), Positives = 202/449 (44%), Gaps = 41/449 (9%)
Query: 400 SLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVP--------FAKILQKCQSEFMIA 451
S L LFL + +L V ++LFL LL++P F + K + M A
Sbjct: 271 STILSLFLDMWILVIVGLFLVRQNMLLFL-LSLLSIPVYAVIIILFKRTFNKLNHDAMQA 329
Query: 452 QDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR----REKEFKWLSEAQLRKAYGTVIY 507
S E LN ++ IK + E + S I+S K FK+ Q ++A V
Sbjct: 330 NAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVT- 388
Query: 508 WMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFD 567
+ +++ G L L + T A L P+ I + +V+ +
Sbjct: 389 --KLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANN 446
Query: 568 RIN-AFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKI 626
R+N +L+D E N +R L + + I + ++S+ L ++L IK K
Sbjct: 447 RLNEVYLVDSEFINKK-KRTELNNLNGDIVINDVSYSYG--YGSNILSDISLTIKMNSKT 503
Query: 627 AVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGS 673
+ G G+GKS+L ++G SG + L G I Y+ Q +I SGS
Sbjct: 504 TIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGS 563
Query: 674 IRDNILYG-KPMDKARYDKAIKACAL---DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729
I +N+L G K D+ AC + DI N G TE+ + G ++SGGQKQRI
Sbjct: 564 ILENLLLGAKE--NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIA 621
Query: 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789
LARA+ D+ + + D+ S +D T + N + L+ KT+I V H++ + D+I+
Sbjct: 622 LARALLTDSKVLILDESTSNLDTITEKKIVNNLL--NLQDKTIIFVAHRLSVAKQSDKII 679
Query: 790 VLEGGQITQSGNYQELLLAGTAFEQLVNA 818
VL+ G+I + G++ ELL + L++
Sbjct: 680 VLDHGKIIEQGSHDELLDRNGFYASLIHN 708
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 4e-36
Identities = 67/195 (34%), Positives = 105/195 (53%), Gaps = 15/195 (7%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL-------------Y 657
P LR V+ + +++A+ G GAGKS+LL +LG + G++ +
Sbjct: 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
IA+V Q ++ +G+I +NI +P A +A++ LD+ + G T IG+
Sbjct: 396 DQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEG 455
Query: 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVT 776
G LSGGQ QR+ LARA DA + L D+P + +DA T A E + A + +TV+LVT
Sbjct: 456 GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEA-EVLEALRALAQGRTVLLVT 514
Query: 777 HQVEFLSEVDRILVL 791
H++ + DRI+VL
Sbjct: 515 HRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (369), Expect = 5e-35
Identities = 83/289 (28%), Positives = 147/289 (50%), Gaps = 3/289 (1%)
Query: 287 LLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346
LL + + P+LL FV + + GL +V L +T++++S ++ S R G
Sbjct: 254 LLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCG 313
Query: 347 MRMRSALMVAVYQKQLKLS--SLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQ 404
++ RSAL +++K +S SL + +TG I+N ++ D R+ F + WS +
Sbjct: 314 LQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMV 373
Query: 405 LFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILN 464
L L+I +L +VG AL + + L+ LN K + + A D R+++T+E +
Sbjct: 374 LLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFS 433
Query: 465 NMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCAL 524
++I K +WE F + IE +R +E ++L + QL + + + +PT++ +V+F L
Sbjct: 434 GIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYL 493
Query: 525 TGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573
G L +F +A L + P MIP + ++Q VS RI+ FL
Sbjct: 494 LGHE-LTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFL 541
|
Length = 1560 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 5e-34
Identities = 132/590 (22%), Positives = 252/590 (42%), Gaps = 91/590 (15%)
Query: 280 IFIAICALL------RTIAVVVGPLLLYAFVNYSNRGEENLQE-GLSIVGCLIITKVVES 332
+ +A A++ T+A ++ PLL F R L L ++G L + + + S
Sbjct: 16 LVLAGVAMILVAATESTLAALLKPLLDDGF---GGRDRSVLWWVPLVVIG-LAVLRGICS 71
Query: 333 FTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYI----------A 382
F + S S +R + V +++K L L + TG +++ I A
Sbjct: 72 FVSTYLL--SWVSNKVVRD-IRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAA 128
Query: 383 VDAYR---------MGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLL 433
DA+ +G F + +W L L + +V+ + +L
Sbjct: 129 TDAFIVLVRETLTVIGLFIVLLYYSWQLTLIV------------------VVMLPVLSIL 170
Query: 434 NVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKL---QSWE-EKFKSLIESRREKE 489
+K L++ E + + E L +++KL Q++E +F ++ R
Sbjct: 171 MRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLA 230
Query: 490 FKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPV 549
K + ++ ++ V+F+ + L A + + ++ P+
Sbjct: 231 MK---MTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPL 287
Query: 550 RMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELA 609
+ + + M + + + + L D D R +++++ V+ + F + P
Sbjct: 288 KSLTNVNAPMQRGLAAAESLFTLL-DSPPEKDTGTR-AIERARGDVEFRNVTFRY-PGRD 344
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV-------------NL 656
P L ++L I+ + +A+ G G+GKS+L+ I SG + +L
Sbjct: 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404
Query: 657 YGSIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIG 714
+A VSQ + + +I +NI YG+ D+A ++A+ A ++ G T IG
Sbjct: 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC---VMAALEK-- 769
+ G+ LSGGQ+QR+ +ARA+ DA I + D+ SA+D NE V AALE+
Sbjct: 465 ENGVLLSGGQRQRLAIARALLKDAPILILDEATSALD--------NESERLVQAALERLM 516
Query: 770 --KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
+T +++ H++ + + DRI+V++ G+I + G + ELL + QL N
Sbjct: 517 QGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHN 566
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 2e-32
Identities = 82/261 (31%), Positives = 132/261 (50%), Gaps = 28/261 (10%)
Query: 565 SFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQ 624
++ RI A L + + D + + + V I++ + P+ P L VN +K Q
Sbjct: 286 AYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTY---PQTDHPALENVNFTLKPGQ 342
Query: 625 KIAVCGSVGAGKSSLLYAIL-------GEI-------PKISGTVNLYGSIAYVSQTSWIQ 670
+ +CG G+GKS+LL I G+I K+ + +A VSQT ++
Sbjct: 343 MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQ-LDSWRSRLAVVSQTPFLF 401
Query: 671 SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729
S ++ +NI G+P + + + ++ DI G TE+G+RG+ LSGGQKQRI
Sbjct: 402 SDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRIS 461
Query: 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL----EKKTVILVTHQVEFLSEV 785
+ARA+ +A+I + DD SAVD T ++ L E +TVI+ H++ L+E
Sbjct: 462 IARALLLNAEILILDDALSAVDGRTEHQ-----ILHNLRQWGEGRTVIISAHRLSALTEA 516
Query: 786 DRILVLEGGQITQSGNYQELL 806
ILV++ G I Q GN+ +L
Sbjct: 517 SEILVMQHGHIAQRGNHDQLA 537
|
Length = 569 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 7e-32
Identities = 81/270 (30%), Positives = 131/270 (48%), Gaps = 19/270 (7%)
Query: 561 QVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620
Q ++ +R+ +L+ +L + ++ + F + P+ L +NLDI
Sbjct: 423 QTGIALERLGD-ILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSP-EVLSNLNLDI 480
Query: 621 KWAQKIAVCGSVGAGKSSL------LYA-------ILGEIPKISGTVNLYGSIAYVSQTS 667
K + I + G G+GKS+L LY + G I+ L + V Q +
Sbjct: 481 KPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQEN 540
Query: 668 WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726
+ S SIRDNI P A K I+ G TE+G++G NLSGGQ+Q
Sbjct: 541 VLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQ 600
Query: 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQVEFLSEV 785
RI +ARA+ + I +FD+ SA+D + A + M + + +TVI++ H++ +
Sbjct: 601 RIAIARALVGNPRILIFDEATSALDYESEALIMRN--MREICRGRTVIIIAHRLSTVRAC 658
Query: 786 DRILVLEGGQITQSGNYQELLLAGTAFEQL 815
DRI+VLE GQI +SG ++ELL + +L
Sbjct: 659 DRIIVLEKGQIAESGRHEELLALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 1e-31
Identities = 60/222 (27%), Positives = 117/222 (52%), Gaps = 17/222 (7%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
++ + + + P L P L+ ++ IK +K+ + G G+GKSSLL A+ + SG+
Sbjct: 2 DIEFKNVSLRYRPNLP-PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKACALD 699
+ + G I+ + Q + SG+IR N+ +G+ D+ + A++ L
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQ-ALERVGLK 119
Query: 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
+ + + G T + + G NLS GQ+Q + LARA+ + I + D+ ++VD T A +
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI- 178
Query: 760 NECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801
+ + A + TV+ + H+++ + + DRILVL+ G++ + +
Sbjct: 179 QKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 2e-31
Identities = 73/237 (30%), Positives = 126/237 (53%), Gaps = 17/237 (7%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
++ ++ NF++ P L G+NL ++ + +A+ G GAGKS+L +L SG +
Sbjct: 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALD 699
L G +A V Q + + S+ +NI YG+P D+ A A A
Sbjct: 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHA-H 456
Query: 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
+ I+ G T +G+RG+ LSGGQ+QRI +ARA+ DA I L D+ SA+DA + L
Sbjct: 457 EFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES-EQLV 515
Query: 760 NECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
+ + ++ +T +++ H++ + + DRI+V++ G+I G + EL+ G + +L
Sbjct: 516 QQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLA 572
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 5e-30
Identities = 40/96 (41%), Positives = 60/96 (62%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + + Y VLK ++ T G +V +VG +GSGK+TL+ L RL +P G IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
IDGVD+ + L+ LR ++ +PQ+P LF G++R N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI 96
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-29
Identities = 127/515 (24%), Positives = 219/515 (42%), Gaps = 76/515 (14%)
Query: 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYI-AVDAYR--------------- 387
R RM ++L AV+ + L+L +++STG++ + + R
Sbjct: 202 RLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAMGISQIRRILSGSTLTTLLSGI 261
Query: 388 MGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQ 445
F+ +W LAL +A+ + + + L+ GLL V + L
Sbjct: 262 FALLNLGLMFYYSWKLAL---VAVALALVAIAV--------TLVLGLLQVRKERRLL--- 307
Query: 446 SEFMIAQDERLRS-TSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT 504
++ T +++N + +++ E + + ++ K AQ + T
Sbjct: 308 -----ELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362
Query: 505 VIYWMSPTIISSVIFLGCA-LTGSAPLNA------STIFTVLATLRSMGEPVRMIPEALS 557
V + P + S+ +F L G A L+ +T F + ++ + + L+
Sbjct: 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFG--SFSGAVTQLSNTLISILA 420
Query: 558 IMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVN 617
++ ++R L L D + K ++++ F + P+ L V+
Sbjct: 421 VIPL----WERAKPIL--EALPEVDEAKTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVS 473
Query: 618 LDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-------------SIAYV 663
L I+ + +A+ G G+GKS+LL +LG E P+ SG+V G + V
Sbjct: 474 LQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE-SGSVFYDGQDLAGLDVQAVRRQLGVV 532
Query: 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
Q + SGSI +NI G P+ +A + L +DI G T I + G LSGG
Sbjct: 533 LQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGG 592
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEF 781
Q+QR+ +ARA+ I LFD+ SA+D T A V +LE K T I++ H++
Sbjct: 593 QRQRLLIARALVRKPRILLFDEATSALDNRTQAI-----VSESLERLKVTRIVIAHRLST 647
Query: 782 LSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
+ DRI VL+ G++ Q G Y EL+ F QL
Sbjct: 648 IRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLA 682
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 7e-29
Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 15/218 (6%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659
L ++L IK + + + G G+GKS+L I +G V + G
Sbjct: 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQ 77
Query: 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
+ V Q + + + SIRDNI P M R +A K I+ G T +G++G
Sbjct: 78 VGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGA 137
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LSGGQ+QRI +ARA+ ++ I +FD+ SA+D + + + +TVI++ H+
Sbjct: 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN-MHDICAGRTVIIIAHR 196
Query: 779 VEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
+ + DRI+V+E G+I + G++ ELL + L
Sbjct: 197 LSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 9e-29
Identities = 77/262 (29%), Positives = 127/262 (48%), Gaps = 18/262 (6%)
Query: 559 MIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNL 618
+ ++ R+N L ++ + + L + + + ++ P PTLRG++
Sbjct: 284 FSGARQAYKRLNELLANYPSRDP---AMPLPEPEGHLSVENVTIV-PPGGKKPTLRGISF 339
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQ 665
++ + +A+ G G+GKS+L I+G P SG+V L G I Y+ Q
Sbjct: 340 SLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399
Query: 666 TSWIQSGSIRDNIL-YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724
+ G++ +NI +G+ D + +A K + + I G T IG G LSGGQ
Sbjct: 400 DVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQ 459
Query: 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784
+QRI LARA+Y D + + D+P S +D L N TV+++TH+ L
Sbjct: 460 RQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGC 519
Query: 785 VDRILVLEGGQITQSGNYQELL 806
VD+ILVL+ G+I + G E+L
Sbjct: 520 VDKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-28
Identities = 69/215 (32%), Positives = 112/215 (52%), Gaps = 14/215 (6%)
Query: 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658
P P L+G++ ++ + + + G G+GKS+L ++G P SG+V L G
Sbjct: 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWD 404
Query: 659 ------SIAYVSQTSWIQSGSIRDNIL-YGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
I Y+ Q + G+I +NI +G+ D + +A + + + I G T
Sbjct: 405 REQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDT 464
Query: 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKT 771
IG+ G LSGGQ+QRI LARA+Y D + + D+P S +D+ A L + A T
Sbjct: 465 RIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGT 524
Query: 772 VILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
V+++ H+ L+ VD+ILVL+ G+I G +E+L
Sbjct: 525 VVVIAHRPSALASVDKILVLQDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-28
Identities = 103/455 (22%), Positives = 195/455 (42%), Gaps = 32/455 (7%)
Query: 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFL 407
R AL V VY++ + + GR++ G+++ + D + + + +AL +
Sbjct: 83 RSLGALRVRVYERLARQALAGRRRLRRGDLLGRLGADVDALQDLYVRVIVPAGVALVVGA 142
Query: 408 AIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQD--ERLRSTSEILNN 465
A V+ + A L L+ P + +E +A+ E ++ L+
Sbjct: 143 AAVAAIAVLSVPAALILAAGLLLAGFVAPLVSLRAARAAEQALARLRGELAAQLTDALDG 202
Query: 466 MKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALT 525
+ + +E + L+ A+ R A T + + + + LG
Sbjct: 203 AAELVASGALPAALAQVEEADRE----LTRAERRAAAATALGAALTLLAAGLAVLGALWA 258
Query: 526 GSAPLN----ASTIFTVLATLR-SMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN 580
G + A VL L + E +P A + +V+ + +RI +LD
Sbjct: 259 GGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVE-VLDAAGPV 317
Query: 581 DDV---RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637
+ ++ ++++++ + + A P L GV+LD+ +++A+ G G+GKS
Sbjct: 318 AEGSAPAAGAVGLGKPTLELRDLSAGYPG--APPVLDGVSLDLPPGERVAILGPSGSGKS 375
Query: 638 SLLYAILGEIPKISGTVNLYGS-------------IAYVSQTSWIQSGSIRDNILYGKP- 683
+LL + G + + G V L G ++ +Q + + ++R+N+ +P
Sbjct: 376 TLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPD 435
Query: 684 MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743
A++ L + G T +G+ G LSGG++QR+ LARA+ DA I L
Sbjct: 436 ATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLL 495
Query: 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
D+P +DA TA L E ++AAL +TV+L+TH
Sbjct: 496 DEPTEHLDAETADELL-EDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 8e-28
Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 45/201 (22%)
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655
+I+ +F + L V+L +K + +A+ G G+GKS+LL AI G + SG +
Sbjct: 1 EIENLSFRYG---GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 656 LYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
+ G + + +R I Y + Q
Sbjct: 58 IDGK-----DIAKLPLEELRRRIGY--------------------------------VPQ 80
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
LSGGQ+QR+ LARA+ + D+ L D+P S +D + L A E +TVI+V
Sbjct: 81 ----LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIV 136
Query: 776 THQVEFLSEV-DRILVLEGGQ 795
TH E DR++VL+ G+
Sbjct: 137 THDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 8e-28
Identities = 71/208 (34%), Positives = 105/208 (50%), Gaps = 36/208 (17%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAY 662
P L V+ ++K + +A+ G GAGKS+LL AILG + SG++ ++G I Y
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGY 72
Query: 663 VSQTSWIQSG---SIRDNI---LYGKPMDKARYDKAIKAC---ALDKDINNFDHGDLTEI 713
V Q I S+RD + LYG R KA KA AL++ L+E+
Sbjct: 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALER-------VGLSEL 125
Query: 714 GQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--- 769
R + LSGGQ+QR+ LARA+ D D+ L D+PF+ VD T + L +
Sbjct: 126 ADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDI-----YELLRELRR 180
Query: 770 --KTVILVTHQVEFLSE-VDRILVLEGG 794
T+++VTH + + E DR+L+L
Sbjct: 181 EGMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 64/205 (31%), Positives = 98/205 (47%), Gaps = 41/205 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVS 664
L ++L ++ + +A+ G G GKS+LL I G SG V + G YV
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79
Query: 665 QTS----WIQSGSIRDNILYG-------KPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
Q W+ ++ DN+ G K + R ++ ++ L N + H
Sbjct: 80 QQDALLPWL---TVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPH------ 130
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KT 771
LSGG +QR+ LARA+ D D+ L D+PFSA+DA T L E ++ + KT
Sbjct: 131 -----QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEE-LLDIWRETGKT 184
Query: 772 VILVTHQVE---FLSEVDRILVLEG 793
V+LVTH ++ FL+ DR++VL
Sbjct: 185 VLLVTHDIDEAVFLA--DRVVVLSA 207
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-27
Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 52/212 (24%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS- 659
+FS+ PE L+ ++L++K +KIA+ G G+GKS+LL + G++ G + L G
Sbjct: 7 SFSY-PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVP 65
Query: 660 -----------IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHG 708
I+ ++Q ++ ++R+N+
Sbjct: 66 VSDLEKALSSLISVLNQRPYLFDTTLRNNL------------------------------ 95
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
G SGG++QR+ LAR + DA I L D+P +D T L + L+
Sbjct: 96 --------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SLIFEVLK 146
Query: 769 KKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
KT+I +TH + + +D+IL LE G+I G
Sbjct: 147 DKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 3e-27
Identities = 71/217 (32%), Positives = 112/217 (51%), Gaps = 29/217 (13%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SI 660
P L ++L ++ + A+ G GAGKS+LL AILG + SG + ++G I
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRI 77
Query: 661 AYVSQTSWIQSG---SIRDNIL---YGKPMDKARYDKAIKACALD--KDINNFDHGDLTE 712
YV Q S + +++D +L YGK R +K K + + + D D +
Sbjct: 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-RQ 136
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKK 770
IG+ LSGGQKQR+ LARA+ + D+ L D+PF+ VD +++ ++ L E K
Sbjct: 137 IGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD--LLKELRQEGK 190
Query: 771 TVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806
TV++VTH + + DR++ L I SG +E+L
Sbjct: 191 TVLMVTHDLGLVMAYFDRVICLNRHLIA-SGPPEEVL 226
|
Length = 254 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 4e-27
Identities = 54/118 (45%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
G I++ L +RY N VLK + G +VG+ GRTGSGK++L A FR+V+ G
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIW---KVSQL 1328
I+IDG+DI + L LR +LSII Q+P LF GS+R NLDP +DD +W +++QL
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQL 135
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 8e-27
Identities = 62/218 (28%), Positives = 110/218 (50%), Gaps = 19/218 (8%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
VK Q F++ L+ V+ + + A+ G G+GKS+++ + G V
Sbjct: 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71
Query: 655 NLYGS-------------IAYVSQTSWIQSGSIRDNILYG---KPMDKARYDKAIKACAL 698
L G ++ V Q + + S++DNI YG + + + A KA A
Sbjct: 72 LLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVK-EAAQKAHA- 129
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
I+ G TE+G++G LSGGQKQR+ +ARA+ + + + D+ SA+DA + +
Sbjct: 130 HSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189
Query: 759 FNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796
+ + E++TV+++ H++ + D+ILVL+GG+I
Sbjct: 190 -QQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 9e-27
Identities = 118/454 (25%), Positives = 205/454 (45%), Gaps = 72/454 (15%)
Query: 394 WFHLTWSLALQLF---LAIGVLFGVV--GLGALPGLVLFLICGLLNVPFAKILQKCQSEF 448
+F +LAL L L + +L ++ LG PG L + V + LQ Q+E
Sbjct: 157 FFD--LTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQG-QAEL 213
Query: 449 MI-AQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES-RREKEFKWLSEAQLRKAYG--- 503
+ ++R R +L+ E++ + + RR+ LS+A + A G
Sbjct: 214 TLFGAEDRYRQ-----------QLEQTEQQ---WLAAQRRQANLTGLSQALMILANGLTV 259
Query: 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVK 563
++ W++ + L A +F LA ++ P + A + QV
Sbjct: 260 VLMLWLAAGGVGGN-------AQPGALIALFVFAALAAFEALM-P---VAGAFQHLGQVI 308
Query: 564 VSFDRINAFLL---DHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620
S RIN + + S+ + +F++ P+ P L+G++L I
Sbjct: 309 ASARRINEITEQKPEVTFPTTS----TAAADQVSLTLNNVSFTY-PDQPQPVLKGLSLQI 363
Query: 621 KWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGT-------VNLYGSIAYVSQT 666
K +K+A+ G G GKS+LL + GEI ++G L +I+ VSQ
Sbjct: 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI-LLNGQPIADYSEAALRQAISVVSQR 422
Query: 667 SWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725
+ S ++RDN+L P + ++ L+K + + D G +G+ G LSGG++
Sbjct: 423 VHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQ 481
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVILVTHQVEF 781
+R+ +ARA+ +DA + L D+P +DA T ++ L + KTV+++TH++
Sbjct: 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQ-----ILELLAEHAQNKTVLMITHRLTG 536
Query: 782 LSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
L + DRI V++ GQI + G +QELL + QL
Sbjct: 537 LEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQL 570
|
Length = 574 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-26
Identities = 72/228 (31%), Positives = 118/228 (51%), Gaps = 27/228 (11%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL--------GEIPKISG----TVNLYG 658
+ V+ + K Q +A+ G GAGKS+L+ +L G I I G TV
Sbjct: 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLI-NLLQRVFDPQSGRI-LIDGTDIRTVTRAS 406
Query: 659 ---SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALD---KDINNFDHGDL 710
+IA V Q + + + SI DNI G+P D+ A +A A D + + +D
Sbjct: 407 LRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYD---- 462
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
T +G+RG LSGG++QR+ +ARA+ D I + D+ SA+D T A + + ++ +
Sbjct: 463 TVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKV-KAALDELMKGR 521
Query: 771 TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
T ++ H++ + DRILV + G++ +SG++ EL+ G F L+ A
Sbjct: 522 TTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRA 569
|
Length = 588 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 31/215 (14%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN------ 655
FS+ P+ A P L ++L IK + + + G G+GKS+LL + G + SG V
Sbjct: 7 FSY-PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDL 65
Query: 656 -------LYGSIAYVSQ--TSWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDIN 703
L + V Q ++ + + +G + + ++ ++ +
Sbjct: 66 TKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE 125
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ LSGGQKQR+ +A + D DI L D+P + +D L +
Sbjct: 126 GLRD-------RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE--L 176
Query: 764 MAAL--EKKTVILVTHQVEFLSEV-DRILVLEGGQ 795
+ L E KT+I+VTH ++ L E+ DR++VLE G+
Sbjct: 177 LKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 6e-26
Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
G++ ++ L +Y VL+ I+ + S G RVG++GRTGSGK+TL+SA RL+ G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQ 1327
I IDGV S+ L+ R +IPQ+ +F G+ R NLDP G +SD+EIWKV++
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAE 113
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 7e-26
Identities = 60/204 (29%), Positives = 86/204 (42%), Gaps = 54/204 (26%)
Query: 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------ 659
P P LR V+ I+ + +A+ G G+GKS+L ILG + SG V L G+
Sbjct: 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD 70
Query: 660 -------IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+ Y+ Q + SGSI +NIL
Sbjct: 71 PNELGDHVGYLPQDDELFSGSIAENIL--------------------------------- 97
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV 772
SGGQ+QR+ LARA+Y + I + D+P S +D L T
Sbjct: 98 --------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATR 149
Query: 773 ILVTHQVEFLSEVDRILVLEGGQI 796
I++ H+ E L+ DRILVLE G++
Sbjct: 150 IVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 7e-26
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 29/200 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVS 664
L +NL ++ + +A+ G G GKS+LL I G SG V L G I YV
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVF 78
Query: 665 QTS----WIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI--GQRGL 718
Q W+ ++ DN+ G ++ KA + + + Q
Sbjct: 79 QEDALLPWL---TVLDNVALG--LELRGKSKAEARERAKELLELVGLAGFEDKYPHQ--- 130
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTH 777
LSGG +QR+ +ARA+ + L D+PF A+DA T L +E + + +KTV+LVTH
Sbjct: 131 -LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTH 189
Query: 778 QVE---FLSEVDRILVLEGG 794
V+ +L+ DR++VL
Sbjct: 190 DVDEAVYLA--DRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
G IE + Y P VLK I + G V +VG TG+GKTTLI+ L R +P G
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVS 1326
ILIDG+DI + K LR + ++ Q+ LF G++ N+ + DE +
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEA 112
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-25
Identities = 80/438 (18%), Positives = 160/438 (36%), Gaps = 60/438 (13%)
Query: 906 VLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFV-----------YF 954
VLA + + A + A + + G V + V +
Sbjct: 17 VLAGVAMILVAATESTLAAL---LKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFV 73
Query: 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIV 1014
++ + + K + + P+ FFD P G +L+R++ D + + +
Sbjct: 74 STYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFI 133
Query: 1015 FVAASGTELLAIIGIMTFVTWQV--LVVAIFAMVAVRFVQRYYIATARELIRINGTTKAP 1072
+ ++ + ++ + +WQ+ +VV + +++ + R R + + +
Sbjct: 134 VLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLS--ILMRRVSKRLRRISKEIQNSMGQ 191
Query: 1073 VMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVE----AL 1128
V ET QG ++ F + + + + L +++
Sbjct: 192 VTTVAEETLQGYRVVKLFGGQAYETRRFDAV-----------SNRNRRLAMKMTSAGSIS 240
Query: 1129 QNLTLFTAA------LFLVLIPR--GYVAPG-LVGLSLSYAF------TLTGTQVFLSRW 1173
+T A+ LF+ L G + G + +LT + R
Sbjct: 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRG 300
Query: 1174 YCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVL 1233
+ + E + + PPE R +G +E R + RY L
Sbjct: 301 -------LAAAESLFTLLDSPPEKD---TGTRAIER--ARGDVEFRNVTFRYPGRDRPAL 348
Query: 1234 KGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293
I+ G V +VGR+GSGK+TL++ + R EP G IL+DG D+ L LR ++
Sbjct: 349 DSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQV 408
Query: 1294 SIIPQEPTLFRGSVRTNL 1311
+++ Q+ LF ++ N+
Sbjct: 409 ALVSQDVVLFNDTIANNI 426
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 27/202 (13%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIA 661
L ++LD+ + IA+ G GAGK++L + G I + SG++ L G SI
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG 74
Query: 662 YVSQTSWIQ--SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
YV Q Q + S+R+ +L G K +A + KD++ + + + L+
Sbjct: 75 YVMQDVDYQLFTDSVREELLLG---LKELDAGNEQAETVLKDLDLYALKE-----RHPLS 126
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA---ATLFNECVMAALEKKTVILVT 776
LSGGQKQR+ +A A+ + D+ +FD+P S +D L E A + K VI++T
Sbjct: 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL---AAQGKAVIVIT 183
Query: 777 HQVEFLSEV-DRILVLEGGQIT 797
H EFL++V DR+L+L G I
Sbjct: 184 HDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-25
Identities = 100/412 (24%), Positives = 177/412 (42%), Gaps = 57/412 (13%)
Query: 945 STASAVFVYFR----SFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSS 1000
S AS+V R ++ A + L+ + F S+ + + FFD G + +RLSS
Sbjct: 211 SIASSVSAGLRGGSFNYTMARINLRIREDLFR----SLLRQDLGFFDENKTGELTSRLSS 266
Query: 1001 DLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQR----YYI 1056
D + + ++ + + LL ++G M +++ ++ +V + + V ++ Y
Sbjct: 267 DTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQ 326
Query: 1057 ATARELIRINGTTKAPVMNYTAETSQ-------GVVTIRAF----NMVDRFFQ--NYLKL 1103
+ E + A+ +Q G+ T+R+F RF +
Sbjct: 327 LLSEE-----------LQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQ 375
Query: 1104 V----DIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSY 1159
+ + + + T V+ LI + + LVL G V+ G + L Y
Sbjct: 376 LNKRKALAYAGYLWTTSVLGMLIQ-------VLVLYYGGQLVL--TGKVSSGNLVSFLLY 426
Query: 1160 AFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELR 1219
L LS Y + + + E++ +++ P P P +G IE +
Sbjct: 427 QEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT-LAPL---NLEGLIEFQ 482
Query: 1220 QLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILID 1277
+ Y RP+ P VLKG+T T G V +VG +GSGK+T+ + L L +P GG +L+D
Sbjct: 483 DVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD 541
Query: 1278 GVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD-PLGLYSDDEIWKVSQL 1328
GV + L +++++ QEP LF GSVR N+ L D+EI ++
Sbjct: 542 GVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKA 593
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-25
Identities = 117/485 (24%), Positives = 210/485 (43%), Gaps = 66/485 (13%)
Query: 371 KHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGAL----PGLVL 426
++ TGE+ + ++ D M + SL + + L V+ + LG + P L +
Sbjct: 254 ENKTGELTSRLSSDTQTMSR-------SLSLNVNVLLRNLVM-LLGLLGFMLWLSPRLTM 305
Query: 427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRST--------SEILNNMKIIKLQSWEE-- 476
L+N+P + +K + E L+ E L+ M+ ++ + EE
Sbjct: 306 VT---LINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGE 362
Query: 477 --KFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNAST 534
+FK +E + +A Y + I V++ G L + +++
Sbjct: 363 ASRFKEALEETLQL---NKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGN 419
Query: 535 IFTVLATLRSMGEPVRMIPEALSIMIQ-VKVS------FDRINAFLLDHELNNDDVRRIS 587
+ + L +GE VR++ S M+Q V S DR L L ++ +
Sbjct: 420 LVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGL- 478
Query: 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI 647
++ Q+ +FS+ +P L+G+ + + +A+ G G+GKS++ +
Sbjct: 479 -------IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY 531
Query: 648 PKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYG---KPMDKARYDK 691
G V L G +A V Q + SGS+R+NI YG P ++
Sbjct: 532 QPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIM--A 589
Query: 692 AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751
A KA I F +G TE+G++G LSGGQKQRI +ARA+ + + D+ SA+D
Sbjct: 590 AAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD 649
Query: 752 AHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811
A L + +TV+L+ H++ + D+ILVL+ G + + G +++L+
Sbjct: 650 AECEQLLQES---RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGC 706
Query: 812 FEQLV 816
++ LV
Sbjct: 707 YKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 4e-25
Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 39/219 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660
L GV+ +++ + + G GAGK++LL + G + SG + + G I
Sbjct: 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80
Query: 661 AYVSQT----SWIQSGSIRDNI-----LYGKP--MDKARYDKAIKACALDKDINNFDHGD 709
YV Q + ++R+N+ LYG + R ++ ++ L+ N
Sbjct: 81 GYVPQEPSLYPEL---TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKK---- 133
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALE 768
+ LSGG KQR+ +A A+ +D ++ + D+P S +D + ++ +A
Sbjct: 134 ---VRT----LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEG 186
Query: 769 KKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T++L TH +E E+ DR+++L G+I G +EL
Sbjct: 187 GVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELK 225
|
Length = 293 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 7e-25
Identities = 109/433 (25%), Positives = 176/433 (40%), Gaps = 67/433 (15%)
Query: 917 AAATYWLAYAI-----------QIPKITSGI--LIGVYAGVSTASAVFVYFRSFFAAHLG 963
AAAT L YA+ + L+ V ++ +A R + LG
Sbjct: 31 AAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTA----ARFYLVTWLG 86
Query: 964 LKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023
+ + FFD G +++RL++D ++L I S+ +
Sbjct: 87 ERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRN---A 143
Query: 1024 LAIIG--IMTFVT------WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMN 1075
L IG IM F+T +L V + + + F +R R+L R + A +
Sbjct: 144 LMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRR-----VRKLSRESQDRIADAGS 198
Query: 1076 YTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME--WLILRVEALQNLTL 1133
Y ET + T++AF D + S F G +E + R L
Sbjct: 199 YAGETLGAIRTVQAFGHEDA-----------ERSRF---GGAVEKAYEAARQRIRTRALL 244
Query: 1134 FTAALFLVL-------------IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANY 1180
+ LV + G ++ G +G + YA + G+ LS + L
Sbjct: 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRA 304
Query: 1181 IISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRY--RPNAPLVLKGITC 1238
+ ER+ + + P+ A K P P +G IE Q+ Y RP+ P L G+
Sbjct: 305 AGAAERLIELLQAEPDIKAPAHPKTLPV--PLRGEIEFEQVNFAYPARPDQP-ALDGLNL 361
Query: 1239 TFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQ 1298
T G V +VG +G+GK+TL L R +P G IL+DGVD+ + +LR +++++PQ
Sbjct: 362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQ 421
Query: 1299 EPTLFRGSVRTNL 1311
+P LF SV N+
Sbjct: 422 DPVLFAASVMENI 434
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-24
Identities = 93/340 (27%), Positives = 156/340 (45%), Gaps = 48/340 (14%)
Query: 1008 DIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRING 1067
D+PF+++F+ ++AIIG + W LV ++ +QR A E +R
Sbjct: 269 DLPFALLFLL-----VIAIIG--GPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMR-ES 320
Query: 1068 TTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLV----DIDASLFFHTNGVMEWLIL 1123
+ V+ E+ G+ TI+A N RF + + + V F +N +
Sbjct: 321 AQRNAVL---VESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNF--- 374
Query: 1124 RVEALQNLTLFTAALFLV---LIPRGYVAPG-LVGLSLSYAFTLTG------TQV--FLS 1171
+ +Q L + A+ +V LI G + G L+ + L+G Q+ L+
Sbjct: 375 -AQFIQQLV--SVAIVVVGVYLISDGELTMGGLIACVM-----LSGRALAPLGQLAGLLT 426
Query: 1172 RWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPL 1231
R+ +++ + + M +P E P E R +G IE R + Y
Sbjct: 427 RYQ----QAKTALQSLDELMQLPVERP---EGTRFLHRPRLQGEIEFRNVSFAYPGQETP 479
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
L ++ T G +V ++GR GSGK+TL+ L L +P GS+L+DGVDI + DLR
Sbjct: 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR 539
Query: 1292 KLSIIPQEPTLFRGSVRTNLDPLG--LYSDDEIWKVSQLT 1329
+ +PQ+P LF G++R N+ LG D+EI + ++L
Sbjct: 540 NIGYVPQDPRLFYGTLRDNIA-LGAPYADDEEILRAAELA 578
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-24
Identities = 74/239 (30%), Positives = 127/239 (53%), Gaps = 24/239 (10%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSL------LYAIL-GEI 647
V+++ F + P L P + +L ++ Q++A+ G G+GKS++ LY GEI
Sbjct: 478 VELRNITFGYSP-LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEI 536
Query: 648 -----PK--ISGTVNLYGSIAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKACALD 699
P+ I V L S+A V Q ++ G++RDN+ L+ + A +A K A+
Sbjct: 537 LFDGIPREEIPREV-LANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIH 595
Query: 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
I + G E+ + G NLSGGQ+QR+++ARA+ + I + D+ SA+D T
Sbjct: 596 DVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKI-- 653
Query: 760 NECVMAALEKK--TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
+ L ++ T I+V H++ + + D I+VLE G++ Q G ++EL G A+ +L+
Sbjct: 654 ---IDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 42/108 (38%), Positives = 61/108 (56%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
GRIE R + Y L ++ T G +V ++GR GSGK+TL+ L L +P GS
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDE 1321
+L+DG DI + DLR + +PQ+ TLF G++R N+ +DDE
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDE 108
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-24
Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 42/217 (19%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658
+ L ++L ++ + +A+ G G GK++LL I G SG + + G
Sbjct: 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR 72
Query: 659 SIAYVSQT----SWIQSGSIRDNILYG-------KPMDKARYDKAIKACALDKDINNFDH 707
+I V Q + ++ +NI +G K +AR + ++ L+ +N + H
Sbjct: 73 NIGMVFQDYALFPHL---TVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPH 129
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
LSGGQ+QR+ LARA+ + + L D+P SA+DA L E + L
Sbjct: 130 E-----------LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE--LKEL 176
Query: 768 EKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSG 800
+++ T I VTH Q E L+ DRI V+ G+I Q G
Sbjct: 177 QRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 8e-24
Identities = 83/266 (31%), Positives = 141/266 (53%), Gaps = 34/266 (12%)
Query: 573 LLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSV 632
+LD E D+ +R ++++ ++ + F++ P +P LR +N I + +A+ G
Sbjct: 321 ILDLEQEKDEGKR-VIERAKGDIEFRNVTFTY-PGKEVPALRNINFKIPAGKTVALVGRS 378
Query: 633 GAGKS---SLL---YAIL-GEIP---------KISGTVNLYGSIAYVSQTSWIQSGSIRD 676
G+GKS +LL Y I GEI ++ +L +A VSQ + + +I +
Sbjct: 379 GSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLA---SLRNQVALVSQNVHLFNDTIAN 435
Query: 677 NILYGKPMDKARYD--KAIK-ACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733
NI Y + +R +A + A A+D IN D+G T IG+ G+ LSGGQ+QRI +ARA
Sbjct: 436 NIAYARTEQYSREQIEEAARMAYAMDF-INKMDNGLDTVIGENGVLLSGGQRQRIAIARA 494
Query: 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVILVTHQVEFLSEVDRIL 789
+ D+ I + D+ SA+D T + AAL++ +T +++ H++ + + D IL
Sbjct: 495 LLRDSPILILDEATSALD-----TESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIL 549
Query: 790 VLEGGQITQSGNYQELLLAGTAFEQL 815
V+E G+I + G + ELL + QL
Sbjct: 550 VVEDGEIVERGTHAELLAQNGVYAQL 575
|
Length = 582 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 99.5 bits (249), Expect = 3e-23
Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 39/214 (18%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-SGTVNLYG---------- 658
+ L+GV+L I+ + +A+ G G+GKS+LL ILG + + SG V + G
Sbjct: 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLL-NILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 659 -------SIAYVSQT-SWIQSGSIRDNILYG-------KPMDKARYDKAIKACALDKDIN 703
I +V Q+ + + + +N+ K + R ++ ++ L +N
Sbjct: 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN 135
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE-C 762
++ LSGGQ+QR+ +ARA+ ND I L D+P +D+ T +
Sbjct: 136 HYPS-----------ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLR 184
Query: 763 VMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796
+ T+++VTH E DRI+ L G+I
Sbjct: 185 ELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 2e-22
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 7/108 (6%)
Query: 1216 IELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
IE + + RY RP+ P +LKG++ T G V +VG +G GK+T++S L R +P G
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDE 1321
IL+DGVDI + L+ LR ++ ++ QEP LF G++ N+ Y +
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENI----RYGKPD 103
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 2e-22
Identities = 54/204 (26%), Positives = 84/204 (41%), Gaps = 54/204 (26%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
L ++L I+ + + + G GAGKS+LL + G + SG + L G
Sbjct: 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK 74
Query: 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
IAYV Q A++ L + R N
Sbjct: 75 IAYVPQ--------------------------ALELL------------GLAHLADRPFN 96
Query: 720 -LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTH 777
LSGG++QR+ LARA+ + I L D+P S +D L +A KTV++V H
Sbjct: 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156
Query: 778 QVEFLSEV-DRILVLEGGQITQSG 800
+ + DR+++L+ G+I G
Sbjct: 157 DLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 2e-22
Identities = 44/238 (18%), Positives = 88/238 (36%), Gaps = 1/238 (0%)
Query: 930 PKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDST 989
+ + L + V + + + LG + K F I PM FFD+
Sbjct: 36 ERSSLISLAILLIAVGVLQGLLLQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTN 95
Query: 990 PVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVR 1049
VG + +RL++D+S + + + S ++ +M + W++ +V + + +
Sbjct: 96 SVGELTSRLTNDVSKIRDGLGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLI 155
Query: 1050 FVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDAS 1109
+ R+L R A + E+ G+ T++AF + + Y K ++
Sbjct: 156 LLSAVLAKKLRKLNRKEQKAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEK 215
Query: 1110 LFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGT 1166
+ + L+ A F L+ G ++ G V LS L+G
Sbjct: 216 AGIKKAITAGLSFGITQLISYLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGP 273
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 3e-22
Identities = 51/273 (18%), Positives = 106/273 (38%), Gaps = 3/273 (1%)
Query: 280 IFIAICALLRTIAVVVGPLLLYAFVN-YSNRGEENLQEGLSIVGCLIITKVVESFTQRHC 338
+ + +L +V PLLL F++ + + +S+ LI V++ +
Sbjct: 2 LIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQGS 61
Query: 339 FFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLT 398
F+ R G R+R L A+ ++ L L +S GE+ + + D ++ +
Sbjct: 62 FYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGL 121
Query: 399 WSLALQLFLAIGVLFGVVGLGALPGLVLFL-ICGLLNVPFAKILQKCQSEFMIAQDERLR 457
+ +L + ++ G L+ L + LL+ AK L+K + A +
Sbjct: 122 FFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGS 181
Query: 458 STSEILNNMKIIKLQSWEEKFKSLI-ESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISS 516
E L+ ++ +K EE ++ + E + +A + +S +
Sbjct: 182 VAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYAL 241
Query: 517 VIFLGCALTGSAPLNASTIFTVLATLRSMGEPV 549
++ G L S L+ T+F L+ + P+
Sbjct: 242 ALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 3e-22
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 47/226 (20%)
Query: 613 LRGVNLDIKWAQKI-AVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQT 666
L+ ++LDI +I A+ G G GKS+LL + L G V L G Y
Sbjct: 16 LKDISLDIP-KGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 667 SWIQ---------------SGSIRDNILYG------KPMD--KARYDKAIKACALDKDIN 703
++ GSI DN+ YG K + R ++A++ AL ++
Sbjct: 75 DVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVK 134
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ H L LSGGQ+QR+ LARA+ N+ ++ L D+P SA+D + A + E +
Sbjct: 135 DRLHA---------LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI--EEL 183
Query: 764 MAALEKK-TVILVTH---QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+A L+K+ T+++VTH Q ++ DR L G++ + G +++
Sbjct: 184 IAELKKEYTIVIVTHNMQQAARVA--DRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 5e-22
Identities = 80/290 (27%), Positives = 122/290 (42%), Gaps = 46/290 (15%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------- 659
+ L+ VNLDI+ + + + G G GKS+LL I G SG + + G
Sbjct: 15 SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK 74
Query: 660 --IAYVSQT-SWIQSGSIRDNILYG---KPMDKARYDKAI----KACALDKDINNFDHGD 709
IA V Q + ++ +NI +G + + KA DK + K L+ +N
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNR----- 129
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE-CVMAALE 768
+ L LSGGQ+QR+ LARA+ ++L D+P S +DA + +E +
Sbjct: 130 ------KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL 183
Query: 769 KKTVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQELL----------LAGTAFEQLVN 817
T I VTH QVE ++ DRI+V+ G+I Q G EL G+ +
Sbjct: 184 GTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFIGSPPMNFLK 243
Query: 818 AHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISV 867
A A + + E+V G RPE + G + V
Sbjct: 244 AEVKADGNGLSIPEDKKVALEQVILG--IRPE--HISLSASGIILGTVEV 289
|
Length = 338 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 6e-22
Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 24/185 (12%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L V+L+I+ + +A+ G G+GKS+LL I G SG++ + G +
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGE---DLTDLEDELP 72
Query: 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732
+R I + +D F H LT + L LSGGQ+QR+ LAR
Sbjct: 73 PLRRRIGM-----------------VFQDFALFPH--LTVLENIALGLSGGQQQRVALAR 113
Query: 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTHQVEFLSEV-DRILV 790
A+ D D+ L D+P SA+D T + + A TV+LVTH ++ + + DR++V
Sbjct: 114 ALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVV 173
Query: 791 LEGGQ 795
L G+
Sbjct: 174 LRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 7e-22
Identities = 78/448 (17%), Positives = 153/448 (34%), Gaps = 65/448 (14%)
Query: 917 AAATYWLAYAIQ-----IPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFF 971
A LA + + L+ + A + R K +
Sbjct: 17 IAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLR 76
Query: 972 SGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMT 1031
+ + K F P G T + L+ P+ ++ + + I+
Sbjct: 77 QLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLE---PYYARYLPQMFLSAIVPLLILI 133
Query: 1032 FVTWQVLVVAIFAMVAVRFVQRYYIAT---ARELIRINGTTKAPVMNYTAETSQGVVTIR 1088
+ + A+ ++ + + I A++ + A + + + +G+ T+R
Sbjct: 134 AIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLR 193
Query: 1089 AFNMVDRFFQNYLKLVDIDASLF-----------FHTNGVMEWLI------------LRV 1125
AF + + + D+ F F ++ V+E+ R+
Sbjct: 194 AFGRTEA----TEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRL 249
Query: 1126 EALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVE 1185
+LTLF L+L P + +G F A + +
Sbjct: 250 LGEGDLTLFAGLFVLILAPEFFQPLRDLG----SFFHAA-------------AAGEAAAD 292
Query: 1186 RIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTR 1245
++ + P P ++ + I L L RY P+ L + T G
Sbjct: 293 KLFTLLESPVATPG--SGEKAEVANEPPIEISLENLSFRY-PDGKPALSDLNLTIKAGQL 349
Query: 1246 VGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG 1305
+VG +G+GK+TL++ L + P G I ++G+D+ + + R ++S + Q P LF G
Sbjct: 350 TALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG 409
Query: 1306 SVRTNLDPLGLY----SDDEIWKVSQLT 1329
++R N + L SD+EI
Sbjct: 410 TIREN---ILLARPDASDEEIIAALDQA 434
|
Length = 559 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 7e-22
Identities = 100/421 (23%), Positives = 174/421 (41%), Gaps = 44/421 (10%)
Query: 929 IPKITSGILIGVYAG---VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLF 985
IP +L+ + + +A F +S L + + + + + + P+ F
Sbjct: 167 IPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSF 226
Query: 986 FDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAM 1045
F G + +R I + S + SG L +G+M + +W++ +VA+ A+
Sbjct: 227 FRQYSTGDLASRAMGISQIRRI-LSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAV-AL 284
Query: 1046 VAVR--------FVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097
V +Q R L+ ++G + T + G+ +R +R F
Sbjct: 285 ALVAIAVTLVLGLLQVRK---ERRLLELSGK----ISGLTVQLINGISKLRVAGAENRAF 337
Query: 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGL-VG-- 1154
+ KL L + L + L L +AALF I GL +G
Sbjct: 338 ARWAKLFSRQRKLELSAQRIENLLTVFNAVLP--VLTSAALFAAAI-SLLGGAGLSLGSF 394
Query: 1155 LSLSYAFTLTGTQVFLSRWYCYLANYIISV-------ERIKQFMHIPPEPPAIVEDKRPP 1207
L+ + AF V L+N +IS+ ER K + PE + E K P
Sbjct: 395 LAFNTAFGSFSGAV-TQ-----LSNTLISILAVIPLWERAKPILEALPE---VDEAKTDP 445
Query: 1208 SSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV 1267
G IE+ ++ RYRP+ PL+L ++ G V +VG +GSGK+TL+ L
Sbjct: 446 G--KLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503
Query: 1268 EPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQ 1327
P GS+ DG D+ + ++ +R +L ++ Q L GS+ N+ + DE W+ ++
Sbjct: 504 TPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAAR 563
Query: 1328 L 1328
+
Sbjct: 564 M 564
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-21
Identities = 94/393 (23%), Positives = 168/393 (42%), Gaps = 38/393 (9%)
Query: 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRIL 995
+L V+ R++ AHL + + + P+ +F+S VG +
Sbjct: 180 VLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTV 239
Query: 996 TRLSSDLSILDF----------DIPFSIVFVAA----SGTELLAIIGIMTFVTWQVLVVA 1041
R+ I +F D+ F +VF+A S T +IG + V + +L V
Sbjct: 240 ARVRELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIG--SLVCYALLSVF 297
Query: 1042 IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101
+ ++ R ++ A ++ E+ G+ TI+A +F +
Sbjct: 298 VGPILRKRVEDKF-------------ERSAAATSFLVESVTGIETIKATATEPQFQNRWD 344
Query: 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFL--VLIPRGYVAPG-LVGLSLS 1158
+ + + F + +E +Q LT F L+ L+ G ++PG LV ++
Sbjct: 345 RQLAAYVAASFRVTNLGNIAGQAIELIQKLT-FAILLWFGAHLVIGGALSPGQLVAFNM- 402
Query: 1159 YAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIEL 1218
A +T + L++ + I++ER+ ++ P EP + P +G I
Sbjct: 403 LAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPE----LRGAITF 458
Query: 1219 RQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278
++ RY P++P VL + G +G+VG +GSGK+TL L RL P G +L+DG
Sbjct: 459 ENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518
Query: 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
VD+ LR ++ ++ QE LF S+R N+
Sbjct: 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNI 551
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 2e-21
Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 25/225 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-------LGEIPKISG----TVN---LYG 658
+ V+ + K Q +A+ G GAGK++L+ + +G+I I G TV L
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI-LIDGIDINTVTRESLRK 409
Query: 659 SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACA---LDKDINNFDHGDLTEI 713
SIA V Q + + + SIR+NI G+ D+ Y+ A A A + K N +D T +
Sbjct: 410 SIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYD----TLV 465
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVI 773
G+RG LSGG++QR+ +ARA+ +A I + D+ SA+D T A + N + A + +T
Sbjct: 466 GERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKN-AIDALRKNRTTF 524
Query: 774 LVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
++ H++ + D +L L+ G++ + G++QEL+ F +L+
Sbjct: 525 IIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRR 569
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 2e-21
Identities = 73/243 (30%), Positives = 110/243 (45%), Gaps = 33/243 (13%)
Query: 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKIS 651
S++I + A L ++LDIK + +A+ G GAGKS+LL I G E P +
Sbjct: 1 MSIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD-A 56
Query: 652 GTVNLYGS--------------IAYVSQT-SWIQSGSIRDNILYGKPMDKARYDKA-IKA 695
G + L G + +V Q + ++ DNI +G + K R +A I+A
Sbjct: 57 GRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRA 116
Query: 696 CALDKDINNFDHGDLTEIGQR-GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754
+ L + R LSGGQ+QR+ LARA+ + + L D+PF A+DA
Sbjct: 117 RVEEL----LRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 172
Query: 755 AATLFNECVMAAL---EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLA-G 809
L + L T + VTH E E+ DR++VL G+I Q G E+
Sbjct: 173 RKEL--RRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPA 230
Query: 810 TAF 812
+ F
Sbjct: 231 SRF 233
|
Length = 345 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 2e-21
Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 44/233 (18%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-- 659
F + A L+ V+L+I+ +++ + G G+GKS+LL + G + SG V + G
Sbjct: 11 FRYPGRKAA--LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDT 68
Query: 660 ------------IAYVSQ---TSWIQSGSIRDNILYG-------KPMDKARYDKAIKACA 697
+ V Q ++ D + +G + + R +A++
Sbjct: 69 SSEKSLLELRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVG 127
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD---AHT 754
L++ ++ NLSGGQKQR+ +A + +I L D+P + +D
Sbjct: 128 LEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176
Query: 755 AATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
L + + KT+I+VTH +E + E DR++VL+ G+I G+ E+
Sbjct: 177 LLELLKK--LKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIF 227
|
Length = 235 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 3e-21
Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 32/213 (15%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-SGTVNLYGS--------- 659
+ L+ VNL+I+ + +A+ G G+GKS+LL +LG + K SG V + G
Sbjct: 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLTKLSEKE 76
Query: 660 --------IAYVSQT-SWIQSGSIRDNI----LYGKPMDKARYDKAIKACALDKDINNFD 706
I +V Q + + ++ +N+ L R A + L + + D
Sbjct: 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEE---LLEVLGLED 133
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MA 765
+ + LSGGQ+QR+ +ARA+ N+ I L D+P +D+ TA + +
Sbjct: 134 RLLKKKPSE----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN 189
Query: 766 ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798
KT+I+VTH E DR++ L+ G+I +
Sbjct: 190 KERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 4e-21
Identities = 99/443 (22%), Positives = 166/443 (37%), Gaps = 40/443 (9%)
Query: 904 LGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYA-GVSTAS---AVFVYFRSFFA 959
LG LA V L + + ++ A ++P + + + V A V AVF Y
Sbjct: 21 LGALALGSAVALLGVSAWLISRAAEMPPV---LYLSVAAVAVRAFGIGRAVFRYLERLVG 77
Query: 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAAS 1019
L++ A + + + G +L RL +D+ L IV +
Sbjct: 78 HDAALRSLGALRVRVYERLARQALAGRRRLRRGDLLGRLGADVDALQDLYVRVIVPAGVA 137
Query: 1020 GTELLAIIGIMTFVTWQV-LVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTA 1078
A + + ++ L++A ++A + AR + + +
Sbjct: 138 LVVGAAAVAAIAVLSVPAALILAAGLLLAGFVAPLVSLRAARAAEQALARLRGELAAQLT 197
Query: 1079 ETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAAL 1138
+ G + A + + D L L AL L A L
Sbjct: 198 DALDGAAELVASGALPAALAQV---EEADRELTRAERRAAAATALG-AALTLLAAGLAVL 253
Query: 1139 FLVLIPRGYVAPG-----------LVGLSLSYAFT-LTGTQVFLSRWYCYLANYIISVER 1186
+ VA G L+ L+ AF L L+R + ER
Sbjct: 254 GALWAGGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTR-------VRAAAER 306
Query: 1187 IKQFMHIPPEPP-AIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTR 1245
I + + P A + K +ELR L Y P AP VL G++ G R
Sbjct: 307 IVEV--LDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGY-PGAPPVLDGVSLDLPPGER 363
Query: 1246 VGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG 1305
V ++G +GSGK+TL++ L L++P G + +DGV + S+ ++R ++S+ Q+ LF
Sbjct: 364 VAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDT 423
Query: 1306 SVRTNL---DPLGLYSDDEIWKV 1325
+VR NL P +D+E+W
Sbjct: 424 TVRENLRLARPDA--TDEELWAA 444
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 5e-21
Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 21/230 (9%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV------- 654
F++DP I L G++ I + +A+ G GAGKS++L + SG++
Sbjct: 270 FAYDPRRPI--LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDI 327
Query: 655 ------NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYD---KAIKACALDKDINNF 705
+L +I V Q + + + +I NI YG+P A + A +A + I +
Sbjct: 328 RDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP--DATAEEVGAAAEAAQIHDFIQSL 385
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
G T +G+RGL LSGG+KQR+ +AR + + I + D+ SA+D HT +
Sbjct: 386 PEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQ-AIQAALRE 444
Query: 766 ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+T +++ H++ + + D I+VL+ G+I + G ++ELL AG + ++
Sbjct: 445 VSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 7e-21
Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 28/213 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-----------IA 661
L+ V+L+++ + G G+GKS LL I G I SG + L G I+
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74
Query: 662 YVSQT-SWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
YV Q + ++ NI YG + +DK ++ + A I++ + ++
Sbjct: 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-------RKP 127
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVIL 774
LSGG++QR+ +ARA+ + I L D+PFSA+D T L E + + K+ TV+
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREE--LKKIRKEFGVTVLH 185
Query: 775 VTH-QVEFLSEVDRILVLEGGQITQSGNYQELL 806
VTH E + D++ ++ G++ Q G +E+
Sbjct: 186 VTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 9e-21
Identities = 69/332 (20%), Positives = 127/332 (38%), Gaps = 26/332 (7%)
Query: 992 GRILTRLSSDLSILDFDI-------PFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFA 1044
G +L RL +D+ LD ++ + + A T L+ I + + ++ +
Sbjct: 115 GDLLNRLVADVDALD-NLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALL--LGLILLLL 171
Query: 1045 MVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLV 1104
++ + + + +A + + + QG + F D +
Sbjct: 172 LLIIPTLFYRAGRKFGAHLAQG---RAALRSQFTDWVQGQAELLIFGAEDAYRTALEA-- 226
Query: 1105 DIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV----LIPRGYVAPGLVGLSLSYA 1160
+AS + L L + L+ + G +A L+L
Sbjct: 227 -TEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVI 285
Query: 1161 FTLTGTQVFLSRWYCY-LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELR 1219
F L+ L I S R+ I + P + ++ +ELR
Sbjct: 286 FAALEAFEPLAPGAFQHLGQVIASARRLND---ILDQKPEVTFPDEQTATTGQA--LELR 340
Query: 1220 QLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279
+ Y LK T ++G +V ++GR+GSGK+TL+ L +P GSI ++GV
Sbjct: 341 NVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGV 400
Query: 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
+I S+ + LR +S++ Q LF G++R NL
Sbjct: 401 EIASLDEQALRETISVLTQRVHLFSGTLRDNL 432
|
Length = 573 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 9e-21
Identities = 33/95 (34%), Positives = 53/95 (55%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E + + RY + P VL+ I+ G V +VG +GSGK+TL++ + R + G IL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTN 1310
IDG D+ L LR ++ ++ Q+ LF +V N
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN 95
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 1e-20
Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 37/217 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-----------SI 660
+ ++LDIK + + + G G GK++LL I G E P SG + L G I
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS-SGEILLDGEDITDVPPEKRPI 79
Query: 661 AYVSQTSWIQSG------SIRDNILYGKPMDKARYDKAIKACALD--KDINNFDHGDLTE 712
V QS ++ +N+ +G + K IKA + + + D
Sbjct: 80 GMV-----FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD--- 131
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-- 770
++ LSGGQ+QR+ LARA+ + + L D+P SA+DA + E + L+++
Sbjct: 132 --RKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE--LKELQRELG 187
Query: 771 -TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
T + VTH Q E L+ DRI V+ G+I Q G +E+
Sbjct: 188 ITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 3e-20
Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 40/224 (17%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659
P L ++ I + + G G+GKS+LL + G + SG V L G
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75
Query: 660 --IAYVSQTSWIQSG-SIRDNILYG-----------KPMDKARYDKAIKACALDKDINNF 705
+AYV Q+ G ++ + +L G D+ ++A++
Sbjct: 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELL--------- 126
Query: 706 DHGDLTEIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV- 763
L + R ++ LSGG++QR+ +ARA+ + I L D+P S +D +
Sbjct: 127 ---GLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183
Query: 764 MAALEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELL 806
+ + TV++V H + D +++L+ G+I G +E+L
Sbjct: 184 LNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 89.0 bits (222), Expect = 3e-20
Identities = 44/185 (23%), Positives = 86/185 (46%), Gaps = 28/185 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L ++L ++ + + G GAGK++L+ ILG + SG + + G + +
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG------KDIKKEPE 69
Query: 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732
++ I Y ++ L +++ ++ L LSGG KQR+ LA+
Sbjct: 70 EVKRRIGY--LPEEPS---------LYENLTVREN----------LKLSGGMKQRLALAQ 108
Query: 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVL 791
A+ +D ++ + D+P S +D + + E KT++L +H +E + DR+ +L
Sbjct: 109 ALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAIL 168
Query: 792 EGGQI 796
G+I
Sbjct: 169 NNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 4e-20
Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 44/240 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWI-- 669
L GV+LD+ + +A+ G G+GKS+LL ILG + G + + G I +S+
Sbjct: 24 LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83
Query: 670 --------QSG------SIRDNILYGKPM-DKARYDKA-IKACALDKDINNFDHGDLTEI 713
Q G ++ +N+ + P+ + + ++ I+ L K L +
Sbjct: 84 RKRMGVLFQQGALFSSLTVFENVAF--PLREHTKLPESLIRELVLMK---------LELV 132
Query: 714 GQRGLN-------LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM-- 764
G RG LSGG ++R+ LARA+ D ++ D+P S +D +A + +E +
Sbjct: 133 GLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG-VIDELIREL 191
Query: 765 -AALEKKTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELLLAGTAF-EQLVNAHRD 821
AL TVI+VTH + L+ DR+ VL G++ G +ELL + + Q N RD
Sbjct: 192 NDALG-LTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFFNGIRD 250
|
Length = 263 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 8e-20
Identities = 68/220 (30%), Positives = 100/220 (45%), Gaps = 38/220 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659
+ VNL I+ + + + G G+GK++ L I I SG + + G
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK 76
Query: 660 IAYVSQTSWIQSG-----SIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLT 711
I YV Q Q G ++ +NI + DK R K + D +
Sbjct: 77 IGYVIQ----QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGL------DPS 126
Query: 712 EIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK- 769
E R + LSGGQ+QR+ +ARA+ D I L D+PF A+D T L E + L+K
Sbjct: 127 EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEE--IKELQKE 184
Query: 770 --KTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
KT++ VTH + E L DRI V++ G+I Q E+L
Sbjct: 185 LGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL 224
|
Length = 309 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 1e-19
Identities = 61/211 (28%), Positives = 102/211 (48%), Gaps = 40/211 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSIAYVSQTSWIQS 671
L+G++L +K + + + G G+GKS+LL I E P SGT+ + G + + +
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD-SGTIIIDGLKLTDDKKNINE- 73
Query: 672 GSIR-------------------DNILYG----KPMDKARYDKAIKACALDKDINNFDHG 708
+R +NI K M KA ++ +A L + + D
Sbjct: 74 --LRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE--RALELLEKVGLADKA 129
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL- 767
D LSGGQ+QR+ +ARA+ + + LFD+P SA+D + + VM L
Sbjct: 130 D-----AYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLD--VMKDLA 182
Query: 768 -EKKTVILVTHQVEFLSEV-DRILVLEGGQI 796
E T+++VTH++ F EV DR++ ++ G+I
Sbjct: 183 EEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 1e-19
Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 48/227 (21%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-------LGEIPKISGT-------VNL 656
+ +NL+I + + + G G+GK++ + I GEI I G V L
Sbjct: 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI-FIDGEDIREQDPVEL 73
Query: 657 YGSIAYVSQTSWIQSG-----SIRDNIL-------YGKPMDKARYDKAIKACALDKDINN 704
I YV Q Q G ++ +NI + K + R D+ + LD
Sbjct: 74 RRKIGYVIQ----QIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---- 125
Query: 705 FDHGDLTEIGQR-GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
E R LSGGQ+QR+ +ARA+ D + L D+PF A+D T L E
Sbjct: 126 ------AEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEE-- 177
Query: 764 MAALEK---KTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
L++ KT++ VTH + E DRI +++ G+I Q G E+L
Sbjct: 178 FKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 1e-19
Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 24/206 (11%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SI 660
L +NLDI + + + G G GK++ L I G SG + + G I
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDI 74
Query: 661 AYVSQT-SWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
A V Q + ++ DNI +G + + K D+ ++ A ++ +H + ++
Sbjct: 75 AMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA---ELLQIEH----LLDRK 127
Query: 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILV 775
LSGGQ+QR+ L RA+ + ++L D+P S +DA + E + T I V
Sbjct: 128 PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV 187
Query: 776 TH-QVEFLSEVDRILVLEGGQITQSG 800
TH QVE ++ DRI V+ GQI Q G
Sbjct: 188 THDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 2e-19
Identities = 63/220 (28%), Positives = 98/220 (44%), Gaps = 33/220 (15%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------- 659
L GV+L + + +A+ G GAGK++LL I+G +P SG++ G
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE 71
Query: 660 -----IAYVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
I YV + I ++ +N+L G AR KA L++ F L E
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLG---AYARRRAKRKA-RLERVYELFP--RLKER 125
Query: 714 -GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--- 769
Q LSGG++Q + +ARA+ + + L D+P + A E + A+ +
Sbjct: 126 RKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL-----APKIVEEIFEAIRELRD 180
Query: 770 --KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T++LV F E+ DR VLE G++ G ELL
Sbjct: 181 EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 3e-19
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 22/181 (12%)
Query: 1131 LTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQF 1190
L L T L+L P Y P L L Y G + + E +
Sbjct: 258 LDLATGLFVLLLAPEFY-LP-LRQLGAQYHARADG---------------VAAAEALFAV 300
Query: 1191 MHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVG 1250
+ P P A + +E + + Y P L+ ++ T G RV +VG
Sbjct: 301 LDAAPRPLAGKAPVTAAPAPS----LEFSGVSVAY-PGRRPALRPVSFTVPPGERVALVG 355
Query: 1251 RTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTN 1310
+G+GK+TL++ L V+P GSI ++GV + R +++ +PQ P LF G++ N
Sbjct: 356 PSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAEN 415
Query: 1311 L 1311
+
Sbjct: 416 I 416
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 3e-19
Identities = 68/230 (29%), Positives = 104/230 (45%), Gaps = 51/230 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
L+ VNL+I + +A+ G GAGKS+LL ++ G + SG + G
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 660 ---IAYVSQT-SWIQSGSIRDNILYGKPMDKAR-------YDKAIKACALDKDINNFDHG 708
I + Q + + S+ +N+L G+ + + K KA ALD
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA-------- 131
Query: 709 DLTEIG------QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
L +G QR LSGGQ+QR+ +ARA+ I L D+P +++D +A +
Sbjct: 132 -LERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESA-----KK 185
Query: 763 VMAALEK------KTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQEL 805
VM L+ TVI+ HQV+ DRI+ L+ G+I G EL
Sbjct: 186 VMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 3e-19
Identities = 69/217 (31%), Positives = 104/217 (47%), Gaps = 38/217 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-----------IA 661
L VNL++ +A+ G G+GKS+LL I G SG + L G I
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 662 YVSQT-SWIQSGSIRDNILYG-------KPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
+V Q + + ++RDNI +G K KAR ++ ++ L+ +
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG------------L 123
Query: 714 GQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-- 770
G R N LSGGQ+QR+ LARA+ + + L D+PF A+DA L + L +
Sbjct: 124 GDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL--RSWLRKLHDEVH 181
Query: 771 -TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
T + VTH Q E + DRI+V+ G+I Q G+ E+
Sbjct: 182 VTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 9e-19
Identities = 35/96 (36%), Positives = 55/96 (57%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I ++ RY+P+ P++L I+ G VG+VGR+GSGK+TL + R P G +L
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
+DG D+ LR ++ ++ QE LF S+R N+
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNI 96
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 1e-18
Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 51/226 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-SIAYVSQTSWI- 669
L+G++L ++ + + + G G+GKS+LL + G E P SG++ + G + +
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD-SGSITVDGEDVGDKKDILKLR 76
Query: 670 -QSG------------SIRDNILY------GKPMDKARYDKAIKACALDKDINNFDHGDL 710
+ G ++ +N+ +AR +KA++ L+K
Sbjct: 77 RKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAR-EKALEL--LEK---------- 123
Query: 711 TEIGQRGL---------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
GL LSGGQ+QR+ +ARA+ D + LFD+P SA+D + +
Sbjct: 124 -----VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDV 178
Query: 762 CVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
A E T+I+VTH++ F EV DR++ ++ G+I + G +E
Sbjct: 179 MKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFF 224
|
Length = 240 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 1e-18
Identities = 68/221 (30%), Positives = 105/221 (47%), Gaps = 33/221 (14%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658
I LRGV+L+++ + +A+ G GAGK++LL I+G + SG + G
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74
Query: 659 ----SIAYVSQTSWI-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE- 712
IAYV + I ++ +N+L G AR DK + L++ F L E
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGA---YARRDKEAQERDLEEVYELFP--RLKER 129
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--- 769
QR LSGG++Q + +ARA+ + + L D+P + A E + A+++
Sbjct: 130 RNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL-----APKIVEEIFEAIKELRK 184
Query: 770 ---KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T++LV F E+ DR VLE G+I SG ELL
Sbjct: 185 EGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225
|
Length = 237 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 2e-18
Identities = 56/222 (25%), Positives = 108/222 (48%), Gaps = 33/222 (14%)
Query: 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
++++ + + P+L P L+ V+ +K +KI + G GAGKS+L+ A+ +
Sbjct: 4 HGEIEVENLSVRYAPDLP-PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 652 GTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACAL 698
G + + G S+ + Q + SG+IR N+ P D Y
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL---DPFD--EYS-------- 109
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
D++I +G L + + GLNLS GQ+Q + LARA+ + + D+ +++D T A L
Sbjct: 110 DEEI----YGAL-RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA-L 163
Query: 759 FNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
+ + T++ + H++ + + D+ILV++ G++ +
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 2e-18
Identities = 100/380 (26%), Positives = 167/380 (43%), Gaps = 66/380 (17%)
Query: 976 NSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTF--- 1032
++ + P+ FD+ PVG++++R+++D ++ D+ V V A+ A+IG M
Sbjct: 106 DAALRQPLSAFDTQPVGQLISRVTNDTEVIR-DL---YVTVVATVLRSAALIGAMLVAMF 161
Query: 1033 -VTWQVLVVA--IFAMVAVRFV--QRYYIATARELIRINGTTKAPVMNYTA-------ET 1080
+ W++ +VA IF V V V QRY R V Y A E
Sbjct: 162 SLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRR-----------VRAYLADINDGFNEV 210
Query: 1081 SQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFL 1140
G+ I+ F RF + ++ + S H M+ L L L+ L +AL L
Sbjct: 211 INGMSVIQQFRQQARFGE---RMGEASRS---HYMARMQTLRLDGFLLRPLLSLFSALIL 264
Query: 1141 --VLIPRGYVAPGLVGLSLSYAF------------TLTGTQVFLSRWYCYLANYIISVER 1186
+L+ G+ A G + + + YAF LT Q L + +++ ER
Sbjct: 265 CGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQ-------AVVAGER 317
Query: 1187 IKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRV 1246
+ + M P + D RP S GRI++ + YR + VL+ I + V
Sbjct: 318 VFELMDGPRQQYG--NDDRPLQS----GRIDIDNVSFAYRDDNL-VLQNINLSVPSRGFV 370
Query: 1247 GVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGS 1306
+VG TGSGK+TL S L G I +DG + S+ LR ++++ Q+P + +
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADT 430
Query: 1307 VRTNLDPLGL-YSDDEIWKV 1325
N+ LG S++++W+
Sbjct: 431 FLANV-TLGRDISEEQVWQA 449
|
Length = 592 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 3e-18
Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 36/216 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSIAYVSQTS---- 667
L+ ++L +K + + + G G GK++LL I G E +GT+ G +++
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT-AGTIYQGGRD--ITRLPPQKR 76
Query: 668 ----WIQSG------SIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714
QS ++ DNI L + M +A + + A LD L
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERV-AELLDLV-------GLPGSE 128
Query: 715 QRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK--- 770
++ LSGGQ+QR+ LARA+ + L D+P SA+DA L E + L+++
Sbjct: 129 RKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE--IRQLQRRLGV 186
Query: 771 TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
T I+VTH Q E LS DRI+V+ G I Q G QE+
Sbjct: 187 TTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 3e-18
Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 46/224 (20%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658
+ L V+ IK + + + G G+GKS+L AILG + SG++ G
Sbjct: 18 VKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLR 77
Query: 659 -----SIAYVSQ---TSWIQSGSIRDNI-----LYGKPMDKARYDKAIKACA----LDKD 701
I V Q +S +I + I ++GK K +A+ L ++
Sbjct: 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEE 137
Query: 702 I-NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA---T 757
+ N + H LSGGQ+QR+ +ARA+ + + + D+P SA+D A
Sbjct: 138 VLNRYPHE-----------LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILD 186
Query: 758 LFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSG 800
L + + T++ +TH + ++++ DR+ V+ G+I + G
Sbjct: 187 LLKK--LQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 4e-18
Identities = 62/243 (25%), Positives = 110/243 (45%), Gaps = 63/243 (25%)
Query: 605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG----- 658
D + L+ V+L + + + G GAGKS+L+ I G E P SG+V + G
Sbjct: 13 DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-SGSVLVDGTDLTL 71
Query: 659 -----------SIAYVSQT-SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFD 706
I + Q + + S ++ +N+ P++ A KA
Sbjct: 72 LSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL--PLEIAGVPKA-------------- 115
Query: 707 HGDLTEIGQR--------GL---------NLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
EI +R GL LSGGQKQR+ +ARA+ N+ + L D+ SA
Sbjct: 116 -----EIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 750 VDAHTAATLFNECVMAALEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
+D T ++ ++ + ++ T++L+TH++E + + DR+ V+E G++ + G +E+
Sbjct: 171 LDPETTQSILA--LLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
Query: 806 LLA 808
Sbjct: 229 FAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 6e-18
Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + Y P P VLK ++ T G +V +VG +GSGK+T++ LFR + + GSIL
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
IDG DI + L LR + ++PQ+ LF ++ N+
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNI 95
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 6e-18
Identities = 65/218 (29%), Positives = 111/218 (50%), Gaps = 32/218 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWI-- 669
+ V+LD++ + + G G+GKS+LL I I SG V + G IA +S+
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 670 ---------QS------GSIRDNILYG---KPMDKA-RYDKAIKACALDKDINNFDHGDL 710
QS ++ +N+ +G + + +A R ++A +A L + ++H
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALEL-VGLEGWEHKYP 158
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEK 769
E LSGG +QR+ LARA+ D DI L D+ FSA+D + +E + + A +
Sbjct: 159 DE-------LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ 211
Query: 770 KTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
KT++ +TH + E L DRI +++ G++ Q G +E+L
Sbjct: 212 KTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 7e-18
Identities = 63/226 (27%), Positives = 102/226 (45%), Gaps = 37/226 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQTSWIQ 670
L V+L + ++I + G GAGKS+LL + GE+ SG V + Y+SQ +
Sbjct: 19 LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLD 78
Query: 671 SG-SIRDNILYG-KPMDK--ARYDKAIKACALDKDI------NNFDHGDLTEIGQR---- 716
++ D ++ G + + A ++A A D + D + R
Sbjct: 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEA 138
Query: 717 --GL----------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
GL +LSGG ++R+ LARA+ + D+ L D+P + +D + L +
Sbjct: 139 LLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDY--- 195
Query: 765 AALE--KKTVILVTHQVEFLSEV-DRILVLEGGQITQ-SGNYQELL 806
L+ TVI+V+H FL V IL L+ G++T GNY L
Sbjct: 196 --LKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYL 239
|
Length = 530 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 1e-17
Identities = 85/399 (21%), Positives = 158/399 (39%), Gaps = 45/399 (11%)
Query: 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILT 996
L+ + V + + ++ L +K + + F I + P+ FF G I +
Sbjct: 196 LLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIAS 255
Query: 997 RLSSDLSILDF---DIP---FSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRF 1050
R+ + + +F + V + +L ++T + + A ++A++
Sbjct: 256 RVQLNDQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI---GIAFAAINVLALQL 312
Query: 1051 VQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN----YLKLVDI 1106
V R + R L + + Q + T++A + FF KL++
Sbjct: 313 VSRRRVDANRRLQQ----DAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNA 368
Query: 1107 DASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV----LIPRGYVAPG--LVGLSLSYA 1160
L GV+ ++ + L LT +AL LV + G + G + SL +
Sbjct: 369 QQEL-----GVLTQILGVLPTL--LTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSS 421
Query: 1161 FT--LTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE---DKRPPSSWPFKGR 1215
F + F + + R+ + P +P E S G
Sbjct: 422 FLEPVNNLVGFGGTLQELEGD----LNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGY 477
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT---LISALFRLVEPAGG 1272
+ELR + Y P P +++ + T G RV +VG +GSGK+T L++ L++ P G
Sbjct: 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSG 534
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
IL DG+ + + L ++++ Q+ LF G+VR NL
Sbjct: 535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNL 573
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+ + RY P VL+ ++ + G + ++G +GSGK+TL + L+ P G +
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTN 1310
+DG DI +L + +PQ+ LF GS+ N
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAEN 95
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 2e-17
Identities = 63/219 (28%), Positives = 108/219 (49%), Gaps = 36/219 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWI-- 669
L+GV+LD++ + +A+ G G+GKS+LL I+G + SG V + G I+ +S+
Sbjct: 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75
Query: 670 --------QSG------SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
QSG ++ +N+ + ++ I+ L+K L +G
Sbjct: 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK---------LEAVGL 126
Query: 716 RGL------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM--AAL 767
RG LSGG K+R+ LARA+ D ++ L+D+P + +D A+ + ++ +
Sbjct: 127 RGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDP-IASGVIDDLIRSLKKE 185
Query: 768 EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
T I+VTH ++ + DRI VL G+I G +EL
Sbjct: 186 LGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 87.7 bits (217), Expect = 3e-17
Identities = 68/249 (27%), Positives = 126/249 (50%), Gaps = 16/249 (6%)
Query: 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI 643
R +S S S+K ++ + + P L P L G++ + ++K+ V G GAGKSS+L A+
Sbjct: 1224 RPVSGWPSRGSIKFEDVHLRYRPGLP-PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNAL 1282
Query: 644 L-------GEIP------KISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYD 690
G I G +L ++ + Q+ + SG++R NI + A
Sbjct: 1283 FRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLW 1342
Query: 691 KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV 750
+A++ + I+ G E+ + G N S GQ+Q + LARA+ + I + D+ ++V
Sbjct: 1343 EALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASV 1402
Query: 751 DAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL-AG 809
D T + L + + T++++ H++ + + D+ILVL GQ+ + + QELL
Sbjct: 1403 DVRTDS-LIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDT 1461
Query: 810 TAFEQLVNA 818
+AF ++V++
Sbjct: 1462 SAFFRMVHS 1470
|
Length = 1495 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 3e-17
Identities = 66/213 (30%), Positives = 103/213 (48%), Gaps = 22/213 (10%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG----------- 658
L V+LDI + +A+ G G+GK++LL I G E P SGT+ G
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD-SGTILFGGEDATDVPVQER 74
Query: 659 SIAYVSQT-SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
++ +V Q + + ++ DN+ +G + K R ++ +A K L + R
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRV-KPRSERPPEAEIRAKVHELLKLVQLDWLADRY 133
Query: 718 LN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVI 773
LSGGQ+QR+ LARA+ + + L D+PF A+DA L + L + T +
Sbjct: 134 PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR--WLRRLHDELHVTTV 191
Query: 774 LVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
VTH Q E L DR++V+ G+I Q G E+
Sbjct: 192 FVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 4e-17
Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 49/220 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
L+ V+L I + +A+ G GAGKS+LL + G + SG+V + G+
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 660 ---IAYVSQT-SWIQSGSIRDNILYGK------------PMDKARYDKAIKACALDKDIN 703
I + Q + I+ S+ +N+L G+ K +A+ A L++
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAA--LER--- 131
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
G L + QR LSGGQ+QR+ +ARA+ + L D+P +++D ++ V
Sbjct: 132 ---VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASS-----RQV 183
Query: 764 MAALEK------KTVILVTHQVEF-LSEVDRILVLEGGQI 796
M L++ TVI+ HQV+ DRI+ L+ G+I
Sbjct: 184 MDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 5e-17
Identities = 70/268 (26%), Positives = 131/268 (48%), Gaps = 25/268 (9%)
Query: 557 SIMIQVKVSFDRINAF-LLD--HELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTL 613
S++ Q V+ +R+ F L+D + +D R + S R + I +F++ + L
Sbjct: 306 SMLQQAVVAGERV--FELMDGPRQQYGNDDRPLQ---SGR-IDIDNVSFAYRDDN--LVL 357
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660
+ +NL + +A+ G G+GKS+L ++G P G + L G +
Sbjct: 358 QNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417
Query: 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720
A V Q + + + N+ G+ + + + +A++ L + + G T +G++G NL
Sbjct: 418 AMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE 780
S GQKQ + LAR + I + D+ + +D+ T + + + A E T++++ H++
Sbjct: 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI-QQALAAVREHTTLVVIAHRLS 536
Query: 781 FLSEVDRILVLEGGQITQSGNYQELLLA 808
+ E D ILVL GQ + G +Q+LL A
Sbjct: 537 TIVEADTILVLHRGQAVEQGTHQQLLAA 564
|
Length = 592 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 5e-17
Identities = 57/236 (24%), Positives = 111/236 (47%), Gaps = 51/236 (21%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYGS----- 659
+P +R V+ +++ + + + G G+GKS+L A++G +P+ SG V L G
Sbjct: 21 RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80
Query: 660 ------------IAYVSQ---TSWIQSGSIRDNI-----LYGKPMDKARYDKAIKACAL- 698
IA + Q TS +I D I L+GK +A++
Sbjct: 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQV 140
Query: 699 ----DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754
+ + + H LSGG +QR+ +A A+ + + D+P +A+D T
Sbjct: 141 GLPDPERRDRYPH-----------QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT 189
Query: 755 AATLFNECVMAALEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
A + + ++ L+++ V+ +TH + ++E+ DR++V+ G+I ++G +E+L
Sbjct: 190 QAQILD--LLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243
|
Length = 539 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 6e-17
Identities = 57/206 (27%), Positives = 88/206 (42%), Gaps = 37/206 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L+ V+ ++ ++I + G GAGKS+LL + G P SGTV + G ++ + + G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG---LGGG 94
Query: 673 -----SIRDNI-----LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG----L 718
+ R+NI L G + + D+ I + +E+G
Sbjct: 95 FNPELTGRENIYLNGRLLG--LSRKEIDEKIDEII-----------EFSELGDFIDLPVK 141
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT---AATLFNECVMAALEKKTVILV 775
S G K R+ A A + DI L D+ + DA E + KTVILV
Sbjct: 142 TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQG---KTVILV 198
Query: 776 THQVEFLSEV-DRILVLEGGQITQSG 800
+H + + DR LVLE G+I G
Sbjct: 199 SHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 7e-17
Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 45/226 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTV-----NLYG---- 658
L+ +NLDI Q A+ G G GKS+LL ++ L +I G V ++Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM----DKARYD----KAIKACAL---DKD 701
+ V Q SI DNI YG + DK D +++K AL KD
Sbjct: 77 VVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD 136
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ L LSGGQ+QR+ +ARA+ + ++ L D+P SA+D + E
Sbjct: 137 ----------RLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKI--E 184
Query: 762 CVMAALEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
++ L+KK T+++VTH ++ + + DR G++ + G +++
Sbjct: 185 ELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 8e-17
Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 40/223 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
+ +LD++ + + G G+GKS+L+ + I G + + G
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 659 ---SIAYVSQTSWIQSG-----SIRDNILYG---KPMDKA-RYDKAIKACALDKDINNFD 706
I+ V Q ++ +N+ +G + + KA R ++A++A L + +
Sbjct: 104 RRKKISMVFQ----SFALLPHRTVLENVAFGLEVQGVPKAEREERALEALEL-VGLEGYA 158
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MA 765
E LSGG +QR+ LARA+ ND DI L D+ FSA+D + +E + +
Sbjct: 159 DKYPNE-------LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQ 211
Query: 766 ALEKKTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELLL 807
A KKT++ +TH + E L DRI +++ G+I Q G +E+LL
Sbjct: 212 AKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILL 254
|
Length = 386 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 1e-16
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 36/221 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAY----- 662
L V++DI Q A+ G G GKS+ L I L + ++ G + G Y
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 663 ----------VSQTSWIQSGSIRDNILYG-----KPMD-KARYDKAIKACALDKDINNFD 706
V Q SI DN+ YG D R +++++ AL ++ +
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-- 172
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
++ GL+LSGGQ+QR+ +ARA+ D ++ L D+P SA+D A + + +
Sbjct: 173 -----QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDP-VATSKIEDLIEEL 226
Query: 767 LEKKTVILVTHQVEFLSEV-DRILV-LEGGQITQSGNYQEL 805
E+ TV++VTH ++ + + D+ V L GG++ + + ++
Sbjct: 227 AEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267
|
Length = 285 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-16
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 27/129 (20%)
Query: 637 SSLLYAILGEIPKISGTVNLYG--------------SIAYVSQTSWI-QSGSIRDNILYG 681
S+LL I G + SGT+ L G I V Q + ++R+N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 682 KPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739
AR ++A++ L ++ + LSGGQKQR+ +ARA+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 740 IYLFDDPFS 748
+ L D+P +
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 2e-16
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
+E+ L Y +L ++ + +G G++G GSGK+TL+ L L++P G +
Sbjct: 2 MLEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEP-TLFRGSVR--------TNLDPLGLYSDDEIWKV 1325
L+DG DI S+ K+L KL+ +PQ P F +V +L G S ++ V
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 1326 SQ 1327
+
Sbjct: 120 EE 121
|
Length = 258 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 2e-16
Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 33/209 (15%)
Query: 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI----- 660
L V+L I + + V G G GK++LL I G + G++ L G
Sbjct: 14 EGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG 73
Query: 661 ---AYVSQTS----WIQSGSIRDNILYG---KPMDKA-RYDKAIKACALDKDINNFDHGD 709
V Q W+ ++ DN+ +G + ++KA R + A + AL + +H
Sbjct: 74 AERGVVFQNEALLPWL---NVIDNVAFGLQLRGIEKAQRREIAHQMLALVG-LEGAEH-- 127
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+ LSGG +QR+ +ARA+ + + L D+PF A+DA T + + E
Sbjct: 128 -----KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET 182
Query: 770 -KTVILVTHQVE---FLSEVDRILVLEGG 794
K V+L+TH +E FL+ R++VL G
Sbjct: 183 GKQVLLITHDIEEALFLA--TRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 3e-16
Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 16/240 (6%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
+KI + ++ L P L+ V IK QK+ +CG G+GKSSL A + G +
Sbjct: 20 IKIHDLCVRYENNLK-PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI 78
Query: 655 -------------NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
L ++ + Q + SGSIR N+ R +A++ L
Sbjct: 79 VIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNM 138
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ + G + + G N S GQ+Q LARA + I + D+ +++D T L +
Sbjct: 139 VKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENIL-QK 197
Query: 762 CVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL-AGTAFEQLVNAHR 820
VM A +TV+ + H+V + + D +LVL G + + + LL F LV +
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRTDK 257
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 3e-16
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 1186 RIKQFMHIPPEPPAIVE--DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEG 1243
++++F + P + + KG +E + Y N+ ++ ++ G
Sbjct: 305 KLEEFFEVEDAVPDVRDPPGAIDLGR--VKGAVEFDDVSFSY-DNSRQGVEDVSFEAKPG 361
Query: 1244 TRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
V +VG TG+GK+TLI+ L R+ +P G ILIDG DI ++ LR ++++ Q+ LF
Sbjct: 362 QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLF 421
Query: 1304 RGSVRTNL 1311
S+ N+
Sbjct: 422 NRSIEDNI 429
|
Length = 588 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 4e-16
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PA 1270
IELR L + Y LK I+ +G ++G +G GK+TL+ L RL + P
Sbjct: 1 IELRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1271 GGSILIDGVDICSMGLKD--LRVKLSIIPQEPTLFRGSVRTNLDPLGL 1316
G +L+DG DI + + LR ++ ++ Q+P F GS+ N+ GL
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVA-YGL 105
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 5e-16
Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 51/230 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L+ +NL+I + +A+ G GAGKS+LL I + SG++ L G
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 659 --SIAYVSQT-SWIQSGSIRDNILYGK-------PMDKARYDKAIKACALDKDINNFDHG 708
I + Q + I+ ++ +N+L+G+ R+ + K AL
Sbjct: 78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA-------- 129
Query: 709 DLTEIG------QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
L +G QR LSGGQ+QR+ +ARA+ D+ L D+P +++D T+ +
Sbjct: 130 -LERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTS-----KQ 183
Query: 763 VMAALEK------KTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805
VM L++ TVI+ HQV+ + DRI+ L+ G+I G EL
Sbjct: 184 VMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 5e-16
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 32/215 (14%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------------- 658
+L I + + G G+GKS+ + + I +G + + G
Sbjct: 12 ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRK 71
Query: 659 SIAYVSQT-SWIQSGSIRDNILYGKPMDK----ARYDKAIKACALDKDINNFDHGDLTEI 713
I V Q + +I N G + R +KA++ L + ++H E
Sbjct: 72 KIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKL-VGLEEYEHRYPDE- 129
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTV 772
LSGG +QR+ LARA+ + DI L D+ FSA+D ++ +E + A +KT+
Sbjct: 130 ------LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTI 183
Query: 773 ILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
+ +TH + E + DRI++++ G+I Q G E+L
Sbjct: 184 VFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 6e-16
Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 48/227 (21%)
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILG---------EIPKISGTVNLYG------- 658
+LDI+ + + G G+GKS+LL A+ G + G+V++
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 659 -----SIAYVSQT----SWIQSGSIRDNILYGKPMD-------KARYDKAIKACALDKDI 702
++ V Q W ++ +N+ +G M + R D+ ++ L +
Sbjct: 102 RLRTHRVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWA 158
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ LSGG +QR+ LARA +A I L D+PFSA+D L +E
Sbjct: 159 DRKPG-----------ELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDEL 207
Query: 763 V-MAALEKKTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELLL 807
+ + + KKT++ V+H + E L +RI ++EGG+I Q G +E++L
Sbjct: 208 LELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 6e-16
Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 42/225 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYGSIAYVSQTSW-IQ 670
L G++L++K + +A+ G G+GK++LL I L E P+ +GT+ + G I + S Q
Sbjct: 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE-AGTIRV-GDITIDTARSLSQQ 76
Query: 671 SGSIR----------------------DNILYGKPMDKARYDKAIKACALDKDINNFDHG 708
G IR +NI+ G P+ K +A A +++
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-PVIVKGEPKE-EATARAREL------ 128
Query: 709 DLTEIGQRG------LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
L ++G G LSGGQ+QR+ +ARA+ ++ LFD+P SA+D + N
Sbjct: 129 -LAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTI 187
Query: 763 VMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
A EK+T+++VTH++ F +V DR + ++ G+I + G + L
Sbjct: 188 RQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232
|
Length = 250 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 6e-16
Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 39/219 (17%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG--------- 658
+ L V+L+I + + G GAGKS+LL I E P SG+V + G
Sbjct: 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT-SGSVFVDGQDLTALSEA 76
Query: 659 -------SIAYVSQT-SWIQSGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNF 705
I + Q + + S ++ +N+ + G P + + L +
Sbjct: 77 ELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVP-KAEIKQRVAELLEL---VGLS 132
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
D D LSGGQKQR+ +ARA+ N+ I L D+ SA+D T ++ ++
Sbjct: 133 DKADRYP-----AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE--LLK 185
Query: 766 ALEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSG 800
+ ++ T++L+TH++E + + DR+ VL+ G++ + G
Sbjct: 186 DINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEG 224
|
Length = 339 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 76.3 bits (189), Expect = 7e-16
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 51/195 (26%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668
+ L GV+L ++ + A+ G GAGKS+L+ + G SG +
Sbjct: 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI-------------L 58
Query: 669 IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG---QRGLNLSGGQK 725
+ GK + A A G I Q LS G++
Sbjct: 59 VD----------GKEVSFASPRDAR------------RAG----IAMVYQ----LSVGER 88
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS 783
Q +++ARA+ +A + + D+P +A+ LF V+ L + VI ++H+++ +
Sbjct: 89 QMVEIARALARNARLLILDEPTAALTPAEVERLFK--VIRRLRAQGVAVIFISHRLDEVF 146
Query: 784 EV-DRILVLEGGQIT 797
E+ DR+ VL G++
Sbjct: 147 EIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 8e-16
Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 38/216 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-SIAYVSQ----- 665
+ ++L I + + + G G GK+++L I G E P SG + L G I +V
Sbjct: 30 ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-SGRIMLDGQDITHVPAENRHV 88
Query: 666 TSWIQS------GSIRDNILYGKPMDK-------ARYDKAIKACALDKDINNFDHGDLTE 712
+ QS ++ +N+ +G M K R +A++ L+ +
Sbjct: 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE------EFAQ--- 139
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-- 770
++ LSGGQ+QR+ +ARAV N + L D+ SA+D + NE + AL++K
Sbjct: 140 --RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNE--LKALQRKLG 195
Query: 771 -TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQE 804
T + VTH Q E L+ DRI+V+ G+I Q G +E
Sbjct: 196 ITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231
|
Length = 375 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 9e-16
Identities = 53/211 (25%), Positives = 94/211 (44%), Gaps = 22/211 (10%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659
L ++L ++ + IA+ G G GKS+LL + I SGT+ G
Sbjct: 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYR 76
Query: 660 --IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
++Y +QT + ++ DN+++ P + R + +A ALD + F D + + +
Sbjct: 77 QQVSYCAQTPALFGDTVEDNLIF--PW-QIRNRRPDRAAALD-LLARFALPD-SILTKNI 131
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL-VT 776
LSGG+KQRI L R + I L D+ SA+D + E+ +L +T
Sbjct: 132 TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWIT 191
Query: 777 H-QVEFLSEVDRILVLEGGQIT--QSGNYQE 804
H + + + D+++ L+ G Q +
Sbjct: 192 HDKDQAIRHADKVITLQPGHAGEMQEARQEL 222
|
Length = 223 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 65/215 (30%), Positives = 93/215 (43%), Gaps = 37/215 (17%)
Query: 613 LRGVNLDIKW---AQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---------- 659
L L I + + + G+ GAGKS+LL I G GT+ L G+
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 660 -------IAYVSQT-SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
I V Q + ++R+N+ +G + R D+ I L D L
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDR-ISVDEL------LDLLGLD 122
Query: 712 EIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEK 769
+ R LSGG+KQR+ LARA+ ++ L D+PFSA+D L E +
Sbjct: 123 HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN 182
Query: 770 KTVILVTHQVEFLSEV----DRILVLEGGQITQSG 800
VI VTH LSE DRI+V+E G++ G
Sbjct: 183 IPVIFVTHD---LSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 17/203 (8%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ--TS 667
L+ ++ +I +++ + G GAGKS+LL I G SG V + G +A + +
Sbjct: 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAG 99
Query: 668 WIQSGSIRDNI-LYGKPMDKARYDKAIKACALDKDINNFDH-GDLTEIGQRGLNLSGGQK 725
+ + R+NI L G + R K I +I F GD I Q S G
Sbjct: 100 FDPELTGRENIYLRGLILGLTR--KEIDEKV--DEIIEFAELGDF--IDQPVKTYSSGMY 153
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDA---HTAATLFNECVMAALEKKTVILVTHQVEFL 782
R+ + A + + DI L D+ + DA NE V + KT++LV+H + +
Sbjct: 154 ARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELV---EKNKTIVLVSHDLGAI 210
Query: 783 SEV-DRILVLEGGQITQSGNYQE 804
+ DR + LE GQI G+ +E
Sbjct: 211 KQYCDRAIWLEHGQIRMEGSPEE 233
|
Length = 249 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-15
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
E+ L RY L ++ T G V +VG GSGK+TL+ A+ L++P G ILI
Sbjct: 1 EIENLSFRY--GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 1277 DGVDICSMGLKDLRVKLSIIPQ 1298
DG DI + L++LR ++ +PQ
Sbjct: 59 DGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 75.5 bits (187), Expect = 2e-15
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
E+ L + Y VL ++ + G VG++G G+GK+TL+ L L++P+ G IL+
Sbjct: 1 EVENLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
Query: 1277 DGVDICSMGLKDLRVKLSIIPQ 1298
DG D+ S+ K+L K++ +PQ
Sbjct: 59 DGKDLASLSPKELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-15
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 33/224 (14%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
++ + + +D + L+ ++ I +IA+ G GAGKS+LL + GE+ +SGTV
Sbjct: 322 LEFENVSKGYDGGRLL--LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 655 NLYG---SIAYVSQTS--WIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGD 709
+ G I Y Q ++ + + G P + +A F G+
Sbjct: 380 KV-GETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG------F-TGE 431
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+ + LSGG+K R+ LA+ + ++ L D+P + +D + + ALE+
Sbjct: 432 --DQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES---------LEALEE 480
Query: 770 K------TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
TV+LV+H FL V RI ++E G Y++ L
Sbjct: 481 ALLDFEGTVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYL 524
|
Length = 530 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 2e-15
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 24/201 (11%)
Query: 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT-----VNLYGSIAYVSQTSWI-Q 670
+L++ + +A+ G GAGKS+LL I G I SG+ + G Y S + Q
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 671 SG------SIRDNILYG-KPMDK--ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721
++R NI G P K A + + A I ++ + + LS
Sbjct: 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADY-------LDRLPEQLS 130
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVE 780
GGQ+QR+ LAR + I L D+PFSA+D + E++ T+++VTH +
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
Query: 781 FLSEV-DRILVLEGGQITQSG 800
+ +I V+ G+I
Sbjct: 191 DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 3e-15
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+ L Y PN LK ++ + + G V ++G +G+GK+TL+ L LVEP GS+L
Sbjct: 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 1276 IDGVDICSMGLKDLR 1290
IDG DI + K LR
Sbjct: 60 IDGTDINKLKGKALR 74
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 3e-15
Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 26/194 (13%)
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVSQT-SWIQSGSIRDN 677
G G GK++LL + G SG++ L G I V Q+ + ++ +N
Sbjct: 3 GPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEEN 62
Query: 678 ILYGKPMDKARYDKA-IKACALDKDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVY 735
+ +G M K +A IK L+ L E R LSGGQ+QR+ LARA+
Sbjct: 63 VAFGLKMRKV--PRAEIKPRVLEA----LRLVQLEEFADRKPHQLSGGQQQRVALARALV 116
Query: 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTH-QVEFLSEVDRILVL 791
I L D+P SA+D + E ++++ T + VTH Q E ++ DRI ++
Sbjct: 117 FKPKILLLDEPLSALDKKLRDQMQLELKT--IQEQLGITFVFVTHDQEEAMTMSDRIAIM 174
Query: 792 EGGQITQSGNYQEL 805
G+I Q G +E+
Sbjct: 175 RKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 3e-15
Identities = 62/239 (25%), Positives = 108/239 (45%), Gaps = 46/239 (19%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------- 659
+ L GV+L ++ + A+ G GAGKS+L+ + G P SG + + G
Sbjct: 20 GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRD 79
Query: 660 -----IAYVSQ-TSWIQSGSIRDNILYG-------KPMDKAR-YDKAIKACALDKDINNF 705
IA V Q S + + S+ +NI G +D+ +A + A +
Sbjct: 80 ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDP 139
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
D T +G +LS Q+Q +++ARA+ DA + + D+P +A+ LF+ ++
Sbjct: 140 D----TLVG----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD--LIR 189
Query: 766 ALEKK--TVILVTHQVEFLSEV----DRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
L+ + +I ++H L EV DRI VL G++ + A T+ ++LV
Sbjct: 190 RLKAQGVAIIYISH---RLDEVFEIADRITVLRDGRVVGTRPT----AAETSEDELVRL 241
|
Length = 500 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 3e-15
Identities = 39/96 (40%), Positives = 62/96 (64%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
E+ ++ Y +LK I+ F G +VG +G+GK+TLI + RL++P GSILI
Sbjct: 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62
Query: 1277 DGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD 1312
DGVDI ++ + DLR K+ ++ Q+P LF G+V+ N++
Sbjct: 63 DGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIE 98
|
Length = 241 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 4e-15
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 1213 KGRIELRQLKIRYRPNAP--LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA 1270
KG ++ + + Y P P LVL+ ++ T G +VG +GSGK+T+++ L +P
Sbjct: 9 KGIVKFQNVTFAY-PTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67
Query: 1271 GGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
GG +L+DG I K L K+S++ QEP LF S++ N+
Sbjct: 68 GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNI 108
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 4e-15
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKG 1235
+L I S RI + + P + ++ + + L + Y VLKG
Sbjct: 303 HLGQVIASARRINEITE---QKPEVTFPTTSTAAAD-QVSLTLNNVSFTYPDQPQPVLKG 358
Query: 1236 ITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295
++ G +V ++GRTG GK+TL+ L R +P G IL++G I LR +S+
Sbjct: 359 LSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISV 418
Query: 1296 IPQEPTLFRGSVRTNL 1311
+ Q LF ++R NL
Sbjct: 419 VSQRVHLFSATLRDNL 434
|
Length = 574 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 4e-15
Identities = 59/239 (24%), Positives = 108/239 (45%), Gaps = 54/239 (22%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYGS---- 659
+ + GV+ ++K + + + G G+GKS L AI+G +PK + G + G
Sbjct: 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLS 76
Query: 660 -------------IAYVSQ---TSWIQSGSIRDNI-----LYGKPMDKA-RYDKAIKACA 697
IA + Q TS +I D I L+GK + K ++AI+
Sbjct: 77 LSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLE 136
Query: 698 L------DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751
L ++ + ++ H LSGG +QR+ +A A+ + + + D+P +A+D
Sbjct: 137 LVGIPDPERRLKSYPH-----------ELSGGMRQRVMIAMALALNPKLLIADEPTTALD 185
Query: 752 AHTAA---TLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
A L E + + +IL+TH + ++E+ DR+ V+ G+I + G +E+
Sbjct: 186 VTVQAQILDLLKE--LQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242
|
Length = 316 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 5e-15
Identities = 97/445 (21%), Positives = 181/445 (40%), Gaps = 59/445 (13%)
Query: 915 LQAAATYWLAYAIQ--IPK-------ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLK 965
+ A +Y+L I IP I S LI Y + Y + F LG +
Sbjct: 171 ISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYI----IQQILSYIQIFLLNVLGQR 226
Query: 966 ASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGT---- 1021
S + +F+ PM FF + G I++R + SI+D A + T
Sbjct: 227 LSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIID----------ALASTILSL 276
Query: 1022 --ELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTT--KAPVMNYT 1077
++ ++ + F+ Q +++ + +++++ I R ++N V+N +
Sbjct: 277 FLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSS 336
Query: 1078 A-ETSQGVVTIRA-------FNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQ 1129
E G+ TI++ ++ +D F +YL S + ++A+
Sbjct: 337 IIEDLNGIETIKSLTSEAERYSKIDSEFGDYLN-----KSF---KYQKADQGQQAIKAVT 388
Query: 1130 NLTLFTAALFL--VLIPRGYVAPG-LVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVER 1186
L L L+ L+ RG + G L+ + ++ LT + ++ L ++ R
Sbjct: 389 KLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIIN-LQPKLQAARVANNR 447
Query: 1187 IKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRV 1246
+ + + E + K+ G I + + Y + +L I+ T ++
Sbjct: 448 LNEVYLVDSE---FINKKKRTELNNLNGDIVINDVSYSYGYGSN-ILSDISLTIKMNSKT 503
Query: 1247 GVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGS 1306
+VG +GSGK+TL L + G IL++G + + LR ++ +PQEP +F GS
Sbjct: 504 TIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGS 563
Query: 1307 VRTNLDPLGL---YSDDEIWKVSQL 1328
+ NL LG S DEIW ++
Sbjct: 564 ILENL-LLGAKENVSQDEIWAACEI 587
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 5e-15
Identities = 48/217 (22%), Positives = 90/217 (41%), Gaps = 32/217 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------SIAYVSQT 666
+R V+ + + + + G GAGK++LL I + SG V + G +
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77
Query: 667 SWIQSG-------SIRDNILY-------GKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+ + R+N+ Y + KAR + K L + ++
Sbjct: 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD--------- 128
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV 772
+R S G KQ++ +ARA+ +D I + D+P S +D T + E + V
Sbjct: 129 --RRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAV 186
Query: 773 ILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLA 808
I +H ++ + + DR++VL G++ G+ + L
Sbjct: 187 IFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223
|
Length = 245 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 5e-15
Identities = 61/197 (30%), Positives = 94/197 (47%), Gaps = 45/197 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
L+ +NLDI + A+ G G GKS+LL + L ++ G V L G Y +
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82
Query: 668 WI----------QS-----GSIRDNILYG--------KPMDKARYDKAIKACAL-D--KD 701
+ Q SI DN+ YG K +D+ + ++K AL D KD
Sbjct: 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE-IVESSLKKAALWDEVKD 141
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ + L LSGGQ+QR+ +ARA+ ++ L D+P SA+D +TL E
Sbjct: 142 ----------RLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP--ISTLKIE 189
Query: 762 CVMAALEKK-TVILVTH 777
++ L+KK T+++VTH
Sbjct: 190 ELITELKKKYTIVIVTH 206
|
Length = 253 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 5e-15
Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 60/188 (31%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
L+ ++L I +I + G GAGKS+LL I GE+ G V ++
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV---------- 63
Query: 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730
I Y F+ LSGG+K R+ L
Sbjct: 64 ------KIGY------------------------FEQ------------LSGGEKMRLAL 81
Query: 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSEV-DR 787
A+ + + ++ L D+P + +D + L AL+ TVILV+H FL +V +
Sbjct: 82 AKLLLENPNLLLLDEPTNHLDLESIEALEE-----ALKEYPGTVILVSHDRYFLDQVATK 136
Query: 788 ILVLEGGQ 795
I+ LE G+
Sbjct: 137 IIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 5e-15
Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 30/213 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI-----AYVSQTS 667
L GV+LDIK + + G G GK++LL I G SG + L G + +
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN 75
Query: 668 WI-QSG------SIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
+ Q+ ++ +NI +G K + KA + + ALD L R
Sbjct: 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAE-ALDLV-------QLEGYANRK 127
Query: 718 LN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVI 773
+ LSGGQ+QR+ +ARA+ N+ + L D+P A+D + E + L+K+ T +
Sbjct: 128 PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE--LKRLQKELGITFV 185
Query: 774 LVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
VTH Q E L+ DRI V+ G+I Q G +E+
Sbjct: 186 FVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 6e-15
Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 44/217 (20%)
Query: 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----SIAYVSQTSWI-Q 670
+L + + +A+ G GAGKS+LL I G SG + + G S S + Q
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 671 SG------SIRDNILYG-KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL----- 718
++ NI G P +K A ++ ++G G
Sbjct: 79 ENNLFAHLTVAQNIGLGLSP--------GLKLNAEQREKV---EAAAAQVGLAGFLKRLP 127
Query: 719 -NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-------EKK 770
LSGGQ+QR+ LAR + + I L D+PFSA+D L E M AL K
Sbjct: 128 GELSGGQRQRVALARCLVREQPILLLDEPFSALD----PALRAE--MLALVSQLCDERKM 181
Query: 771 TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T+++VTH E + + DR++ L+ G+I G+ QELL
Sbjct: 182 TLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 7e-15
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ + + Y VLK ++ +G ++ ++GR+GSGK+TL+ L ++P G I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
+DGV + + K L +S++ Q P LF ++R NL
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL 95
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 8e-15
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+R L RY L I+ T +G G++G G+GKTTLI + L++P G I
Sbjct: 1 IEVRNLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLD 1312
+ G DI ++++ ++ +P+EP+L+ +VR NL
Sbjct: 59 VLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENLK 95
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 1e-14
Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 19/220 (8%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL------GEIPKISG----TVNLY---GS 659
L ++ I Q++ + G G+GKS+LL A L G+I +I G +V L +
Sbjct: 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDI-QIDGVSWNSVPLQKWRKA 78
Query: 660 IAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKACALDKDINNF-DHGDLTEIGQRG 717
+ Q +I SG+ R N+ YGK D+ + K + L I F D + G
Sbjct: 79 FGVIPQKVFIFSGTFRKNLDPYGKWSDEEIW-KVAEEVGLKSVIEQFPGQLDFVLV-DGG 136
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
LS G KQ + LAR+V + A I L D+P + +D T + + + A TVIL H
Sbjct: 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVI-RKTLKQAFADCTVILSEH 195
Query: 778 QVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
++E + E R LV+E ++ Q + Q+LL + F+Q ++
Sbjct: 196 RIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAIS 235
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 1e-14
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+R L +Y + L G++ G G++G G+GKTTL+ L L++P G IL
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLD 1312
+ G D+ +R ++ +PQEP+L+ +VR NL+
Sbjct: 64 VLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLE 100
|
Length = 293 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-14
Identities = 52/237 (21%), Positives = 99/237 (41%), Gaps = 53/237 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW---- 668
+ V+ D++ + + + G G+GKS+L + G +P SG++ G ++
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 669 --IQ------------SGSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
IQ ++ D + L +A A L+ L
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLE----------LV 416
Query: 712 EIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+ L+ LSGGQ+QR+ +ARA+ + + + D+P SA+D A + N ++
Sbjct: 417 GLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN--LLKD 474
Query: 767 LEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGN-----------YQELLLA 808
L+++ T + ++H + + + DR+ V+ G+I + G Y LLA
Sbjct: 475 LQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531
|
Length = 539 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 62/194 (31%), Positives = 93/194 (47%), Gaps = 38/194 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
L+ +NLDI+ Q A+ G G GKS+ L + L KI G V L G Y S
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 668 WIQ---------------SGSIRDNILYGKPM----DKARYD----KAIKACALDKDINN 704
Q SI DN+ YG DK + D K++K AL ++ +
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD 138
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
+ + L LSGGQ+QR+ +ARA+ + ++ L D+P SA+D +TL E ++
Sbjct: 139 -------RLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDP--ISTLKIEELI 189
Query: 765 AALEKK-TVILVTH 777
L+K T+++VTH
Sbjct: 190 QELKKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 51/214 (23%), Positives = 82/214 (38%), Gaps = 41/214 (19%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SIA 661
VN WA + G GAGK++LL + GE P SG V L G I
Sbjct: 54 VNPGEHWA----IVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG 109
Query: 662 YVS-------QTSW-----IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGD 709
VS + + SG +Y + + A L + G
Sbjct: 110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQW---LLE-----LLGA 161
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN--ECVMAAL 767
+ +LS G+++R+ +ARA+ D ++ + D+P +D L N E + A+
Sbjct: 162 KHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASP 221
Query: 768 EKKTVILVTHQV-EFLSEVDRILVLEGGQITQSG 800
++ VTH E L+L+ G++ G
Sbjct: 222 GAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 1e-14
Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 27/205 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---------IAYV 663
L ++ ++ + + G GAGK++ + ILG I SG V G I Y+
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75
Query: 664 SQTSWI-QSGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
+ + + D ++Y G ++AR +D+ + + + +R
Sbjct: 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR-------IDEWLERLELSEYAN--KRV 126
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVT 776
LS G +Q++Q AV +D ++ + D+PFS +D L + + KTVIL T
Sbjct: 127 EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVILST 185
Query: 777 HQVEFLSEV-DRILVLEGGQITQSG 800
HQ+E + E+ DR+L+L G+ G
Sbjct: 186 HQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 40/195 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAY----- 662
L +++ I + A G G GKS+LL L + +I G + L G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100
Query: 663 ----------VSQTSWIQSGSIRDNILYG---------KPMDKARYDKAIKACALDKDIN 703
V Q SI +N++YG + +D+A +++++ AL ++
Sbjct: 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEA-VERSLRGAALWDEVK 159
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ H + LSGGQ+QR+ +ARA+ + ++ L D+P SA+D +TL E +
Sbjct: 160 DRLH-------ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP--ISTLKIEEL 210
Query: 764 MAAL-EKKTVILVTH 777
+ L K T+++VTH
Sbjct: 211 ITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 33/84 (39%), Positives = 48/84 (57%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
EL+ L Y A L I+ T +G V +VG GSGK+TL+ L L+ P G +L+
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 1277 DGVDICSMGLKDLRVKLSIIPQEP 1300
DG D+ + LK+LR K+ ++ Q P
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNP 84
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 30/219 (13%)
Query: 604 WDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG-- 658
W+ I L V+L ++ Q +A+ GS G+GK++LL AI G + SG + G
Sbjct: 16 WNKYARI--LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP 73
Query: 659 --------SIAYVSQTS-WIQSGSIRDNILY------GKPMDKARYDKAIKACALDKDIN 703
+AYV Q + ++R+ + Y + A K L +D+
Sbjct: 74 RKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAI-RKKRVEDVLLRDLA 132
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
G G +SGG+++R+ +A + D + + D+P S +D+ TA L +
Sbjct: 133 LTRIG-----GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS 187
Query: 764 MAALEKKTVILVTHQ--VEFLSEVDRILVLEGGQITQSG 800
A + VIL HQ + DRIL+L G+I SG
Sbjct: 188 QLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 39/220 (17%)
Query: 605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYG-SIA 661
+ +L L+GV+L I + +A+ GS G+GKS+LL+ +LG + P SG V G S++
Sbjct: 13 EGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLH-LLGGLDNPT-SGEVLFNGQSLS 70
Query: 662 YVSQTSWIQSGSIRD----------------NILYGKPM-----DKARYDKAIKACALDK 700
+S + +R+ L M K+ + +A + +
Sbjct: 71 KLSSN---ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLE 127
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
+ +H I R LSGG++QR+ +ARA+ N + L D+P +D + A +F
Sbjct: 128 KVG-LEH----RINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF- 181
Query: 761 ECVMAAL--EKKT-VILVTHQVEFLSEVDRILVLEGGQIT 797
+M L E T ++VTH +E ++DR+L ++ GQ+
Sbjct: 182 -DLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 3e-14
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE++ L + VLKGI+ + +G V ++G +GSGK+TL+ L L EP GSI
Sbjct: 3 IEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 1276 IDGVDICSMG-LKDLRVKLSIIPQEPTLF 1303
+DG D+ + LR K+ ++ Q+ LF
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLF 89
|
Length = 240 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 3e-14
Identities = 59/200 (29%), Positives = 96/200 (48%), Gaps = 27/200 (13%)
Query: 626 IAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQT---SWIQSGSI 674
+ + G GAGK++LL AILG IP GTV + G+ I YV Q +W S+
Sbjct: 9 LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISV 68
Query: 675 RDNILYGK-----PMDKARY-DKAIKACALDKDINNFDHGDLTEIGQRGL-NLSGGQKQR 727
++ G+ + + D A AL + LTE+ R + LSGGQ+QR
Sbjct: 69 AHTVMSGRTGHIGWLRRPCVADFAAVRDALRR-------VGLTELADRPVGELSGGQRQR 121
Query: 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ-VEFLSEVD 786
+ +ARA+ + L D+PF+ +D T L + A +++ TH + ++ D
Sbjct: 122 VLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCD 181
Query: 787 RILVLEGGQITQSGNYQELL 806
R+++L G++ G Q+L
Sbjct: 182 RVVLLN-GRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 3e-14
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 39/219 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYGS----------- 659
L ++L+I+ + +A+ G G GK++LL AI G + ++G + +
Sbjct: 21 LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80
Query: 660 IAYVSQT-SWIQSGSIRDNILYG---KPMDKA----RYDKAIKACALDKDINNFDHGDLT 711
+A + Q + + DN+ +G + M KA R A+K L +
Sbjct: 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA---- 136
Query: 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK- 770
LSGG +QRI +ARA+ + D+ L D+P SA+DA+ A + E +AAL ++
Sbjct: 137 -------QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREE--IAALHEEL 187
Query: 771 ---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
T++ VTH Q + L+ D+ +++ G++ G Q L
Sbjct: 188 PELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 45/221 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
LRGV+L++ + V G G GK++LL ++G +P SG++ L G
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75
Query: 660 -IAYVSQTSWIQSG-SIRDNILYGKPMD-KARYDKAIKACALD-----KDINNFDHGDLT 711
IAYV Q I ++ +N+L G + R + I + K++
Sbjct: 76 GIAYVPQGREIFPRLTVEENLLTG--LAALPRRSRKIPDEIYELFPVLKEM--------- 124
Query: 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV------DAHTAATLFNECVMA 765
+G+RG +LSGGQ+Q++ +ARA+ + L D+P + D +
Sbjct: 125 -LGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRR-----LR 178
Query: 766 ALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
A ++LV ++F E+ DR V+E G++ SG EL
Sbjct: 179 AEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 4e-14
Identities = 70/247 (28%), Positives = 121/247 (48%), Gaps = 30/247 (12%)
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL------ 644
S S+K ++ + PEL P L G++ +I ++K+ + G GAGKSS+L A+
Sbjct: 1234 SSGSIKFEDVVLRYRPELP-PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE 1292
Query: 645 -GEIP----KIS--GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACA 697
G I IS G ++L + + Q + SG++R N+ + A ++++
Sbjct: 1293 RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAH 1352
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
L I G E+ + G N S GQ+Q + LARA+ + I + D+ +AVD T A
Sbjct: 1353 LKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1412
Query: 758 L-------FNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL-AG 809
+ F C M +++ H++ + + DRILVL+ G++ + + LL G
Sbjct: 1413 IQKTIREEFKSCTM--------LIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEG 1464
Query: 810 TAFEQLV 816
+AF ++V
Sbjct: 1465 SAFSKMV 1471
|
Length = 1622 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 4e-14
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE++ L Y P LK + ++G V ++G +G+GK+TL+ +L LV+P G IL
Sbjct: 4 IEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 1276 IDGVDICSM---GLKDLRVKLSIIPQEPTLF-RGSVRTNL 1311
+GV I + L+ LR + +I Q+ L R SV N+
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENV 102
|
Length = 258 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 4e-14
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IELR L + VLKG+ G + ++G +GSGK+TL+ + L+ P G +L
Sbjct: 1 IELRGLTKSFGGRT--VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 1276 IDGVDICSMG---LKDLRVKLSIIPQEPTLF 1303
IDG DI + L LR ++ ++ Q LF
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALF 89
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 5e-14
Identities = 54/213 (25%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
+ GV+L +K + + + G GAGK++ Y I+G + SG + L G
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 659 SIAYVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI-GQR 716
I Y+ Q + I ++ +NIL ++ K + L++ + F +T + +
Sbjct: 76 GIGYLPQEASIFRKLTVEENIL--AVLEIRGLSKKEREEKLEELLEEFH---ITHLRKSK 130
Query: 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV-ILV 775
+LSGG+++R+++ARA+ + L D+PF+ VD + ++ L+ + + +L+
Sbjct: 131 ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQK--IIKILKDRGIGVLI 188
Query: 776 T-HQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
T H V E LS DR ++ G++ G +E+
Sbjct: 189 TDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 5e-14
Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 37/218 (16%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658
P + ++L++ + + G GAGK++ L + GE+ SGT + G
Sbjct: 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQ 75
Query: 659 SIAYVSQTSWIQSG-SIRDNI-----LYGKPMDKARY--DKAIKACALDKDINNFDHGDL 710
S+ Y Q + ++R+++ L G P + + + ++ L N
Sbjct: 76 SLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN------- 128
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
LSGG K+++ LA A+ + L D+P S +D + +++ ++ + +
Sbjct: 129 KRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD-LILEVRKGR 183
Query: 771 TVILVTHQ---VEFLSEVDRILVLEGGQITQSGNYQEL 805
++IL TH E L DRI ++ G++ G+ QEL
Sbjct: 184 SIILTTHSMDEAEALC--DRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 5e-14
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 39/219 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSL---LYAILGEIP--KISGTVNLYGSIAYVSQTS 667
L+ +NL I + A+ G G GKS+ L ++ +P K++G +N GS +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 668 WI----------QSG-----SIRDNILYG--------KPMDKARYDKAIKACALDKDINN 704
+ Q G SI DN+ YG K + +K++K AL ++ +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL-FNECV 763
H + L+LSGGQ+QR+ +ARA+ + D+ L D+P SA+D +T E +
Sbjct: 148 RLH-------TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDP--VSTRKIEELI 198
Query: 764 MAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGN 801
+ EK T+++VTH ++ + V D+ G++ + +
Sbjct: 199 LKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECND 237
|
Length = 259 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 6e-14
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+EL+ + RY VL ++ G V ++G +GSGK+TL+ + L EP GSIL
Sbjct: 1 LELKNVSKRY--GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1276 IDGVDICSMG--LKDLRVKLSIIPQEPTLFRG-SVRTNL 1311
IDG D+ + L LR ++ ++ Q+ LF +V N+
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENI 97
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 6e-14
Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 55/203 (27%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
+R V+ +++ + + + G VG G++ L A+ G P SG + L G
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 660 -IAYVS----QTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714
IAYV + + S+ +NI +
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENIA---------------------------------LS 102
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL 774
LSGG +Q++ LAR + D + + D+P VD A ++ A K V+L
Sbjct: 103 SL---LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLL 159
Query: 775 VTHQV-EFLSEVDRILVLEGGQI 796
++ ++ E L DRILV+ G+I
Sbjct: 160 ISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 6e-14
Identities = 58/237 (24%), Positives = 108/237 (45%), Gaps = 24/237 (10%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658
L GV+L ++ + + G GAGK++LL AI G + +GTV + G
Sbjct: 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAA 75
Query: 659 --SIAYVSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKA--CALDKDINNFDHGDLTEI 713
+A V Q TS +R + G+ ++R+D + A+++ + + +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAME---RTGVAQF 132
Query: 714 GQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV 772
R + +LSGG++QR+ LARA+ + L D+P +++D + + KT
Sbjct: 133 ADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTA 192
Query: 773 ILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT---AFEQLVNAHRDAITG 825
+ H ++ + D +++L G++ +G ++L A T AF+ D TG
Sbjct: 193 VAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAFDARTAVGTDPATG 249
|
Length = 402 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 9e-14
Identities = 27/104 (25%), Positives = 57/104 (54%), Gaps = 12/104 (11%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
+E++ L + + V L ++ + +G +G+VG +GSGK+TL A+ L++P GS
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1274 ILIDGVDICSMGLKDLRV---KLSIIPQEPTLFRGSVRTNLDPL 1314
I+ DG D+ + + ++ ++ ++ Q+P ++L+P
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP-------MSSLNPR 98
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 9e-14
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 39/226 (17%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI--LGE-IPK--ISGTVNLYGSIAYVSQT 666
L V+LD + A+ G G+GKS+LL +I + + P+ I+G++ G Y +T
Sbjct: 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79
Query: 667 SWIQ---------------SGSIRDNILYGKPM----DKARYDKAIKACALDKDINNFDH 707
+ SI +N++YG + DK D+A++ I +
Sbjct: 80 DTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD--- 136
Query: 708 GDLTEIGQR----GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
E+ R L LSGGQ+QR+ +AR + I L D+P SA+D +A + E
Sbjct: 137 ----EVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI--EET 190
Query: 764 MAALEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLL 807
+ L+ T++LVT ++ S + DR G + + + +++ +
Sbjct: 191 LLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236
|
Length = 252 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 9e-14
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 27/194 (13%)
Query: 627 AVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------IAYVSQTS---WIQSGS 673
A+ G G+GKS+L A++G + SG +++ G +AYV Q+ W
Sbjct: 37 ALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVL 96
Query: 674 IRDNILYGK--PMDKAR----YDKAIKACALDK-DINNFDHGDLTEIGQRGLNLSGGQKQ 726
+ D ++ G+ M R D+ I AL + D+ F H +IG+ LSGGQK+
Sbjct: 97 VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH---RQIGE----LSGGQKK 149
Query: 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVD 786
R+ LARA+ + L D+PF+ VD T A + + E KT+++ TH + ++E
Sbjct: 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFC 209
Query: 787 RILVLEGGQITQSG 800
V+ G + SG
Sbjct: 210 DYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 1e-13
Identities = 65/209 (31%), Positives = 101/209 (48%), Gaps = 18/209 (8%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-----------IA 661
L ++LDI Q +A+ G G+GK++LL I G + SG + +G+ +
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77
Query: 662 YVSQT-SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNF-DHGDLTEIGQR-GL 718
+V Q + + ++ DNI +G + R + A A+ + + L + R
Sbjct: 78 FVFQHYALFRHMTVFDNIAFGLTVLPRR--ERPNAAAIKAKVTQLLEMVQLAHLADRYPA 135
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTH 777
LSGGQKQR+ LARA+ + I L D+PF A+DA L E K T + VTH
Sbjct: 136 QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTH 195
Query: 778 QVEFLSEV-DRILVLEGGQITQSGNYQEL 805
E EV DR++V+ G I Q+G ++
Sbjct: 196 DQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 44/246 (17%)
Query: 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE 646
L + S+ G F A L V+L+I+ + + + G G+GKS+L + G
Sbjct: 3 LLSVRNLSIVYGGGKF------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL 56
Query: 647 IPKISGTVNLYGS--------------IAYVSQ---TSWIQSGSIRDNI---LYGKPMDK 686
SG++ L G + V Q +S ++ + L + K
Sbjct: 57 EKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSK 116
Query: 687 A--RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
+ R + + L + +R LSGGQ+QRI +ARA+ + + + D
Sbjct: 117 SQQRIAELLDQVGLPPSFLD----------RRPHELSGGQRQRIAIARALIPEPKLLILD 166
Query: 745 DPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQ---VEFLSEVDRILVLEGGQITQSG 800
+P SA+D A + N + E+ T + ++H VE + DRI V++ GQI + G
Sbjct: 167 EPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC--DRIAVMDNGQIVEIG 224
Query: 801 NYQELL 806
+ELL
Sbjct: 225 PTEELL 230
|
Length = 252 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 42/243 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659
L ++L + + A+ G G GKS+LL + SGTV L
Sbjct: 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77
Query: 660 IAYVSQTSWIQSG-SIRDNILYGK-----------PMDKARYDKAIKACALDKDINNFDH 707
+A + Q G ++R+ + YG+ D AR ++A++ ++
Sbjct: 78 LALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-------- 129
Query: 708 GDLTEIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+ R L +LSGGQ+QR LA + D + L D+P + +D + L
Sbjct: 130 ----HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN 185
Query: 767 LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL---LAGTAFEQLVNAHRDA 822
+ KTV+ V H + S D ++VL G + G +E++ L T F+ H +
Sbjct: 186 TQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFDVEAEIHPEP 245
Query: 823 ITG 825
++G
Sbjct: 246 VSG 248
|
Length = 255 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 34/210 (16%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA 661
+ + + + GV+ IK + + + G G GKS+L ILG SG + G
Sbjct: 18 KGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG--- 74
Query: 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD-INNFDHGDLTEIGQRGLNL 720
+D K + R + ++ L ++ + + H L
Sbjct: 75 -------------KDITKLSKEERRERVLELLEKVGLPEEFLYRYPH-----------EL 110
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTH 777
SGGQ+QRI +ARA+ + + + D+P SA+D A + N ++ L+++ T + ++H
Sbjct: 111 SGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILN--LLKDLQEELGLTYLFISH 168
Query: 778 QVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+ + + DRI V+ G+I + G +E+
Sbjct: 169 DLSVVRYISDRIAVMYLGKIVEIGPTEEVF 198
|
Length = 268 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 58/204 (28%), Positives = 97/204 (47%), Gaps = 39/204 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
L+G++LD + A+ G G GKS+ L + L I+G V+L G Y
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 668 WIQ---------------SGSIRDNILYGKPM----DKARYDKAI----KACALDKDINN 704
+Q SI +N++YG + DKA D+A+ K A+ ++ +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
H + L+LSGGQ+QR+ +AR + D+ L D+P SA+D ++ + N ++
Sbjct: 141 HLH-------ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIEN-MLL 192
Query: 765 AALEKKTVILVTHQVEFLSEVDRI 788
++ T+ILVTH + + RI
Sbjct: 193 ELRDQYTIILVTHS---MHQASRI 213
|
Length = 252 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 2e-13
Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 45/247 (18%)
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL---GEI 647
S + V + GN+ L G++LD + + A+ G G GKS+ L + +I
Sbjct: 6 SAKDVHLSYGNYE--------ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDI 57
Query: 648 P--KISGTV-----NLYGS----------IAYVSQTSWIQSGSIRDNILYG--------K 682
KI+G + N+YGS + V Q S+ DN+ YG K
Sbjct: 58 ENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDK 117
Query: 683 PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742
+ R ++++K A+ K+ + + + SGGQ+QRI +ARA+ + L
Sbjct: 118 ELIDQRVEESLKQAAIWKETKD-------NLDRNAQAFSGGQQQRICIARALAVRPKVVL 170
Query: 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGN 801
D+P SA+D +++ + E +M + T I+VTH ++ + D+ L G + ++G
Sbjct: 171 LDEPTSALDPISSSEI-EETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGP 229
Query: 802 YQELLLA 808
+E+ +A
Sbjct: 230 TEEMFIA 236
|
Length = 251 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 26/216 (12%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658
L V+LDI ++ G GAGKS+LL + + K SG + + G
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74
Query: 659 -SIAYVSQTSWIQSG-SIRDNILYGK-PMDKARYDKAIKACALDKDINN--FDHGDLTEI 713
++ + Q + I S ++RD + +G+ P + R K D+ I N ++ L ++
Sbjct: 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKE------DRRIINEAIEYLHLEDL 128
Query: 714 GQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKT 771
R L+ LSGGQ+QR +A + D D L D+P + +D + + A E KT
Sbjct: 129 SDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKT 188
Query: 772 VILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806
+++V H + F S D I+ L+ G++ + G+ E++
Sbjct: 189 IVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224
|
Length = 252 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I++ + Y + LK ++ +EG V ++G GSGK+T+ L L++P G I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEP 1300
IDG+ I LK++R K+ II Q P
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNP 92
|
Length = 271 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 3e-13
Identities = 66/210 (31%), Positives = 99/210 (47%), Gaps = 25/210 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---------IAYV 663
L+GVNL I+ + I++ G G GKS+LL I G SG V L G +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 664 SQTSWIQSGSIRDNILYGKPMDKARYD--KAIKACALDKDIN--NFDHGDLTEIGQRGLN 719
S + ++R+NI +D+ D K+ + +++ I GQ
Sbjct: 61 QNYSLLPWLTVRENIALA--VDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQ---- 114
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQ 778
LSGG KQR+ +ARA+ + L D+PF A+DA T L E + E + TV++VTH
Sbjct: 115 LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
Query: 779 VE---FLSEVDRILVLEGGQITQSGNYQEL 805
V+ LS DR+++L G G E+
Sbjct: 175 VDEALLLS--DRVVMLTNGPAANIGQILEV 202
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 40/193 (20%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI--------AY 662
P L +NL ++ + + V G G GK++LL I G +P G++ L G
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGV 74
Query: 663 VSQTS----WIQSGSIRDNILYG---KPMDKA-RYDKAIKACALDKDINNFDHGDLTEIG 714
V Q W +++DN+ +G ++K R + A + L
Sbjct: 75 VFQNEGLLPWR---NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKV---------GLEGAE 122
Query: 715 QRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK---- 769
+R + LSGGQ+QR+ +ARA+ + + L D+PF A+DA T E + L K
Sbjct: 123 KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT-----REQMQTLLLKLWQE 177
Query: 770 --KTVILVTHQVE 780
K V+L+TH +E
Sbjct: 178 TGKQVLLITHDIE 190
|
Length = 255 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 3e-13
Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 32/213 (15%)
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-------------GSI 660
+ +NLDI + + G G GKS+LL I G SG +L+ +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG--DLFIGEKRMNDVPPAERGV 77
Query: 661 AYVSQTSWIQSG-SIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
V Q+ + S+ +N+ +G + K ++ + A ++ H L + ++
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVA---EVLQLAH--LLD--RK 130
Query: 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVI 773
LSGGQ+QR+ + R + + ++L D+P S +DA + E ++ L K+ T+I
Sbjct: 131 PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE--ISRLHKRLGRTMI 188
Query: 774 LVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
VTH QVE ++ D+I+VL+ G++ Q G EL
Sbjct: 189 YVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 4e-13
Identities = 73/245 (29%), Positives = 119/245 (48%), Gaps = 41/245 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLL--YAILGE-IP--KISGTV-----NLYGS--- 659
++ V LDI Q A G G GKS++L + L + IP ++ G V NLY
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 660 -------IAYVSQTSWIQSGSIRDNILYGKPMDKARYD------KAIKACALDKDINNFD 706
I V Q SI DNI YG ++ + D ++++ AL ++ +
Sbjct: 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-- 143
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
++ Q GL+LSGGQ+QR+ +ARA+ ++ L D+P SA+D +TL E +M
Sbjct: 144 -----KLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDP--ISTLRIEELMHE 196
Query: 767 L-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN-----AHR 820
L E+ T+I+VTH ++ + V + ++T+ G L+ E++ N A R
Sbjct: 197 LKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNSPQQQATR 256
Query: 821 DAITG 825
D ++G
Sbjct: 257 DYVSG 261
|
Length = 264 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 5e-13
Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 35/235 (14%)
Query: 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652
++ +E ++S + L+ +++ + + G GAGKS+L+ I I G
Sbjct: 2 NEIEFKEVSYSSFGKE---ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG 58
Query: 653 TV-------------NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAI----KA 695
++ +L I V Q + G+++DNI YG PM K + +
Sbjct: 59 SILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYG-PMLKGEKNVDVEYYLSI 117
Query: 696 CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755
L+K+ D NLSGG+ QR+ +AR + N+ ++ L D+P SA+D T+
Sbjct: 118 VGLNKEYATRDVK----------NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-TS 166
Query: 756 ATLFNECVMAALEKK--TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLL 807
+ E ++ K TVI +TH +E + D L G + + +
Sbjct: 167 TEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221
|
Length = 241 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 7e-13
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
IE L RY LK ++ +G RV ++G GSGK+TL+ L L++P G +
Sbjct: 3 MIEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 1275 LIDGVDICSM-GLKDLRVKLSIIPQEPT--LFRGSVRTNLD--PLGL-YSDDEIWK 1324
L+DG+D S L +LR K+ ++ Q P LF +V + L +EI +
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEE 117
|
Length = 235 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 8e-13
Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+ L Y PN LK I + G V ++G +G+GK+TL+ + RLVEP+ GSIL
Sbjct: 2 LEVENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 1276 IDGVDICSMGLKDL---RVKLSIIPQEPTLF-RGSVRTNL 1311
++G DI + K L R ++ +I Q L R +V N+
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENV 100
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-12
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 1216 IELRQLKIRY---RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
IEL + + L ++ +G G++G +G+GK+TL+ + L P G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1273 SILIDGVDICSM---GLKDLRVKLSIIPQEPTLFRGSVRT 1309
S+ +DG D+ ++ L+ LR K+ +I Q L S RT
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL--SSRT 99
|
Length = 339 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 52/237 (21%), Positives = 103/237 (43%), Gaps = 31/237 (13%)
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650
+K++ +FS+ L+ V+ +I + +A+ G G+GKS++ + G +
Sbjct: 4 KSVMIKVENVSFSYPNSEN-NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ 62
Query: 651 SGTVNLYGSIAYVSQTSWIQS---------------GSIRDNILYG---KPMDKARYDKA 692
SG + + G I+ ++ D+I +G K + +
Sbjct: 63 SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDI 122
Query: 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
I A + ++ + + NLSGGQKQR+ +A + + +I +FD+ S +D
Sbjct: 123 IDDLAKKVGMEDY-------LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 753 HTAATLFNECVMAALEK---KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ +M L K KT+I +TH ++ D+++V G++ G +E+L
Sbjct: 176 KGKREIKK--IMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEIL 230
|
Length = 271 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 2e-12
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+ L Y + +L G++ T EG V ++GR G+GKTTL+ + L+ P GSI
Sbjct: 1 LEVENLNAGYGKSQ--ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 1276 IDGVDICSMGLKDLRVKLSI--IPQEPTLFRG-SVRTNLDPLGLY 1317
DG DI + R + I +P+ +F +V NL LG Y
Sbjct: 59 FDGRDITGLPP-HERARAGIGYVPEGRRIFPELTVEENLL-LGAY 101
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-12
Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 17/109 (15%)
Query: 1216 IELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP---- 1269
+E+ L + + ++ ++ G +G+VG +GSGK+TL AL L+
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 1270 AGGSILIDGVDICSMGLKDLRV----KLSIIPQEPTLFRGSVRTNLDPL 1314
G +++DG D+ + +++R ++++I Q+P T+L+P+
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM-------TSLNPV 107
|
Length = 539 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 52/215 (24%), Positives = 103/215 (47%), Gaps = 24/215 (11%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658
+ V+L++ + + + G GAGK++ Y I+G + SG + L
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 659 --SIAYVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI-G 714
I Y+ Q + I ++ DNI+ + + KA + LD + F +T +
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFH---ITHLRD 134
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV-I 773
+ +LSGG+++R+++ARA+ + L D+PF+ VD + ++ L+ + + +
Sbjct: 135 SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR--IIKHLKDRGIGV 192
Query: 774 LVT-HQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
L+T H V E L DR ++ G++ G+ +E++
Sbjct: 193 LITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 25/185 (13%)
Query: 633 GAGKSSLLYAILGEIPKISGTV------------NLYGSIAYVSQT-SWIQSGSIRDNIL 679
GAGK++L+ + P SGT+ L I Y+ Q + ++R+ +
Sbjct: 35 GAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLD 94
Query: 680 YG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736
Y K + + + + +N D +IG LSGG ++R+ +A+A+
Sbjct: 95 YIAWLKGIPSKEVKARV--DEVLELVNLGDRAK-KKIGS----LSGGMRRRVGIAQALVG 147
Query: 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQ 795
D I + D+P + +D N E + VIL TH VE + + +++ VL G+
Sbjct: 148 DPSILIVDEPTAGLDPEERIRFRNLLSELG-EDRIVILSTHIVEDVESLCNQVAVLNKGK 206
Query: 796 ITQSG 800
+ G
Sbjct: 207 LVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 64/226 (28%), Positives = 96/226 (42%), Gaps = 44/226 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYA------------ILGEIPKISG-------- 652
L +NLDI + A G G GKS+ L + GE+ I G
Sbjct: 21 LFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL-DIDGIDVYSVDT 79
Query: 653 -TVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
V L + V Q SI DN+ YG + +K K ++ LT
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNK--------KKLDEIVEKSLT 131
Query: 712 EIG----------QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+G LSGGQ+QR+ +ARA+ + L D+P SA+D AT E
Sbjct: 132 SVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP--VATNVIE 189
Query: 762 CVMAALEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
++ L+K T+I+VTH ++ +V DR+ + G+I + QE+
Sbjct: 190 NLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
|
Length = 251 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 30/201 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-SGTVNLYGS------------ 659
L +NL I+ + A+ G G+GKS+LL I+G + K SG V L G
Sbjct: 14 LDDLNLTIEKGKMYAIIGESGSGKSTLL-NIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 660 -----IAYVSQT-SWIQSGSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
+ Y+ Q + I++ ++ +N+ L K + K + K +N
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK--- 129
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
Q+ LSGG++QR+ LARA+ + L D+P ++D + + + E K
Sbjct: 130 ----QKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGK 185
Query: 771 TVILVTHQVEFLSEVDRILVL 791
T+I+VTH E + DR++ L
Sbjct: 186 TIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 2e-12
Identities = 64/202 (31%), Positives = 94/202 (46%), Gaps = 38/202 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAY----- 662
L +NL I + A+ G G GKS+ L + L KI G V L G Y
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 663 ----------VSQTSWIQSGSIRDNILYGKPM----DKARYDK----AIKACALDKDINN 704
V Q SI DN+ YG + DK DK A+K AL ++ +
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD 139
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
++ + L LSGGQ+QR+ +AR + D+ L D+P SA+D +TL E +M
Sbjct: 140 -------DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP--ISTLKIEDLM 190
Query: 765 AALEKK-TVILVTHQVEFLSEV 785
L+K+ T+++VTH ++ S V
Sbjct: 191 VELKKEYTIVIVTHNMQQASRV 212
|
Length = 251 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 9/92 (9%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC--VMAAL--EKKTVILV 775
LSGGQ+QR+ +ARA+ + LFD+P SA+D L +E VM L E T+++V
Sbjct: 137 LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE----LRHEVLKVMQDLAEEGMTMVIV 192
Query: 776 THQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
TH++ F +V R++ ++ G+I + G+ Q L+
Sbjct: 193 THEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224
|
Length = 240 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 3e-12
Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 38/202 (18%)
Query: 623 AQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-----------SIAYVSQTSWIQ 670
+ A+ G G+GKS+LL I G E P+ SG V + G ++ + Q + +
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQ-SGRVLINGVDVTAAPPADRPVSMLFQENNLF 82
Query: 671 SG-SIRDNILYG-------KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722
+ ++ N+ G D+ +AI+ + + + LSG
Sbjct: 83 AHLTVEQNVGLGLSPGLKLTAEDR----QAIEVALARVGLAGLEK-------RLPGELSG 131
Query: 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDA---HTAATLFNECVMAALEKKTVILVTHQV 779
G++QR+ LAR + D + L D+PF+A+D L + + A K TV++VTHQ
Sbjct: 132 GERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD--LHAETKMTVLMVTHQP 189
Query: 780 EFLSEV-DRILVLEGGQITQSG 800
E + R++ L+ G+I G
Sbjct: 190 EDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-12
Identities = 60/239 (25%), Positives = 101/239 (42%), Gaps = 52/239 (21%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKI-AVCGSVGAGKSSLLYAILGEIPKISG 652
+ + + GNF+ D +P A+ I A+ G G+GK+SL+ I G G
Sbjct: 5 NFRQRLGNFALDANFTLP-----------ARGITALFGPSGSGKTSLINMIAGLTRPDEG 53
Query: 653 TVNLYG-----------------SIAYVSQTSWI-QSGSIRDNILYG-KPMDKARYDKAI 693
+ L G I YV Q + + ++R N+ YG +A++D+ +
Sbjct: 54 RIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLV 113
Query: 694 KACALDKDINNFDHGDLTEIG----QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
L I + LSGG+KQR+ + RA+ ++ L D+P ++
Sbjct: 114 ---------------ALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158
Query: 750 VDAHTAATLFNECVMAALEKKTVIL-VTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
+D + E IL V+H + E L DR++VLE G++ SG +E+
Sbjct: 159 LDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVW 217
|
Length = 352 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 3e-12
Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 29/230 (12%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISG 652
S+++ N + A L + LD + + + G GAGKSSLL + L E+P+ SG
Sbjct: 2 SIQLNGINCFYG---AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR-SG 57
Query: 653 TVNLYGSIAYVSQTSWIQSG-SIRDNI------------------LYGKPMDKARYDKAI 693
T+N+ G+ S+T ++ +R N+ L P R
Sbjct: 58 TLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC---RVLGLS 114
Query: 694 KACALDKDINNFDHGDLTEIGQR-GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
K AL + L R L+LSGGQ+QR+ +ARA+ + + LFD+P +A+D
Sbjct: 115 KDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGN 801
A + + A T ++VTH+VE + R++ +E G I + G+
Sbjct: 175 EITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
|
Length = 242 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 4e-12
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 1201 VEDKRPPSSWP----FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGK 1256
V + P+ P KG +E R + + N+ + ++ G V +VG TG+GK
Sbjct: 316 VFQREEPADAPELPNVKGAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTGAGK 374
Query: 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
TTLI+ L R+ +P G ILIDG+DI ++ + LR ++ + Q+ LF S+R N+
Sbjct: 375 TTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENI 429
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 4e-12
Identities = 61/208 (29%), Positives = 108/208 (51%), Gaps = 23/208 (11%)
Query: 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---------KISGTVNLYGSIAYVSQTS 667
N+ +K + ++ G+G+ S ++ G+I + NL+ + VSQ
Sbjct: 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLF---SIVSQEP 1305
Query: 668 WIQSGSIRDNILYGKPMDKARYD--KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725
+ + SI +NI +GK D R D +A K A+D+ I + + T +G G +LSGGQK
Sbjct: 1306 MLFNMSIYENIKFGKE-DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQK 1364
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KTVILVTHQVEFLS 783
QRI +ARA+ + I L D+ S++D+++ L + ++ +K KT+I + H++ +
Sbjct: 1365 QRIAIARALLREPKILLLDEATSSLDSNS-EKLIEKTIVDIKDKADKTIITIAHRIASIK 1423
Query: 784 EVDRILVLEG----GQITQS-GNYQELL 806
D+I+V G Q+ G ++ELL
Sbjct: 1424 RSDKIVVFNNPDRTGSFVQAHGTHEELL 1451
|
Length = 1466 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 4e-12
Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 42/225 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAY----V 663
L+ +NL I Q A+ G G GKS+LL + L E KI+G + + G Y V
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 664 SQTSWIQSG-----------SIRDNILYG---------KPMDKARYDKAIKACALDKDIN 703
+ I+ G SI +N+ YG K +D+ +++++ AL ++
Sbjct: 79 ADLR-IKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEV-VERSLRGAALWDEVK 136
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ LSGGQ+QR+ +AR + + D+ L D+P SA+D AT E +
Sbjct: 137 -------DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDP--IATHKIEEL 187
Query: 764 MAALEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
M L+K T+++VTH ++ + DR G++ + + Q +
Sbjct: 188 MEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232
|
Length = 249 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 4e-12
Identities = 66/221 (29%), Positives = 102/221 (46%), Gaps = 48/221 (21%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-------EIPKISGTV--NLYGS- 659
++G++LD+ + I + G G GKS+LL + G EI I G V L +
Sbjct: 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI-WIGGRVVNELEPAD 75
Query: 660 --IAYVSQT-SWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
IA V Q + S+R+N+ YG + M KA ++ + A + E+
Sbjct: 76 RDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAA-----------RILEL 124
Query: 714 GQ----RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE- 768
+ LSGGQ+QR+ + RA+ + ++LFD+P S +DA V LE
Sbjct: 125 EPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLR-------VQMRLEI 177
Query: 769 -------KKTVILVTH-QVEFLSEVDRILVLEGGQITQSGN 801
K T + VTH QVE ++ DR++V+ GG Q G
Sbjct: 178 QRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGT 218
|
Length = 356 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 5e-12
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK-DLR 1290
L+G++ G V ++GR G+GKTTL+ + LV P G I+ DG DI GL R
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDI--TGLPPHER 75
Query: 1291 VKLSI--IPQEPTLF-RGSVRTNLDPLGLY 1317
+L I +P+ +F R +V NL LG Y
Sbjct: 76 ARLGIAYVPEGRRIFPRLTVEENLL-LGAY 104
|
Length = 237 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-12
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ 670
L +N +++ +++ + G GAGK+SLL A+ G P SG +++ ++ ++ Q ++
Sbjct: 409 LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLP 468
Query: 671 SGSIRDNILYGKPMDKARYD-----KAIKACALDKDINNFD-HGDLTEIGQRGLNLSGGQ 724
G++R+ + Y P + + L D + LSGG+
Sbjct: 469 QGTLREALCY--PNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRV------LSGGE 520
Query: 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784
+QR+ AR + + D+ SA+D T L+ + + L TVI V H+ +
Sbjct: 521 QQRLAFARLLLHKPKWVFLDEATSALDEETEDRLY-QLLKEELPDATVISVGHRPTLWNF 579
Query: 785 VDRILVLEG 793
R L L
Sbjct: 580 HSRQLELLD 588
|
Length = 604 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 5e-12
Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 37/224 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTV-----NLYGS--- 659
L +N+ I A+ G G GKS+ L + L E KI G V N+Y +
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 660 -------IAYVSQTSWIQSGSIRDNILYGKPM----DKARYD----KAIKACALDKDINN 704
I V QT SI DNI YG + DK + D +++K AL ++ +
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD 142
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
++ L+LSGGQ+QR+ +AR + + ++ L D+P SA+D + + E ++
Sbjct: 143 -------KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKI-EELII 194
Query: 765 AALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLL 807
E T+I+VTH ++ + DR G I + + EL
Sbjct: 195 NLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFF 238
|
Length = 254 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 6e-12
Identities = 63/241 (26%), Positives = 107/241 (44%), Gaps = 53/241 (21%)
Query: 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG 645
I + ++V EG EL+I L+GV L +K + +A+ G G+GKS+LL + G
Sbjct: 7 IEVHHLSKTVGQGEG------ELSI--LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG 58
Query: 646 EIPKISGTVNLYG-----------------SIAYVSQT-SWIQSGSIRDNI-----LYGK 682
SG V L G + +V Q+ I + + +N+ L G+
Sbjct: 59 LDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE 118
Query: 683 ----PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738
A+ ++A L K + ++ LSGG++QR+ LARA
Sbjct: 119 SSADSRAGAK--ALLEAVGLGKRLTHYPA-----------QLSGGEQQRVALARAFAGRP 165
Query: 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTHQVEFLSEVDRILVLEGGQ 795
D+ D+P +D T + + ++ AL ++ T++LVTH + + DR L L G+
Sbjct: 166 DVLFADEPTGNLDRATGDKIAD--LLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGR 223
Query: 796 I 796
+
Sbjct: 224 L 224
|
Length = 228 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 7e-12
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 1227 PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG--VDICSM 1284
P P VLKG+ G + ++G G+GK+TL+ L L+ P G++LIDG +D
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 1285 GLKDLRVKLSIIPQEP--TLFRGSVRTNLD--PLGL-YSDDEI 1322
GL + R ++ ++ Q+P LF V ++ PL L S+ E+
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEV 104
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 7e-12
Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 40/226 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-----EIPKISGTVNLYGSIAYVSQTS 667
L+GV++DI A+ G G GKS+ L + + +I G+V L G Y +
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 668 WI----------QS-----GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+ QS SIR+NI YG P + + A L +D + +L E
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYG-PRKHGDINTGLLARLLGRDDKD-AEDELVE 178
Query: 713 ---------------IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
+ L LSGGQ+QR+ +AR + D ++ L D+P SA+D A +
Sbjct: 179 RSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP-IATS 237
Query: 758 LFNECVMAALEKKTVILVTHQVEFLSEV-DRILV-LEGGQITQSGN 801
+ + E+ TV++VTH ++ + + D+ V L GG++ + +
Sbjct: 238 KIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDD 283
|
Length = 305 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 8e-12
Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 52/252 (20%)
Query: 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI 647
LQ + + QEG+ D L V+ I + +A+ GS G+GKS+LL+ + G
Sbjct: 6 LQCDNLCKRYQEGSVQTD------VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD 59
Query: 648 PKISGTVNLYGSIAYVSQTSWIQSGSIRDN------------------------ILYGKP 683
SG V G +S+ S +R+ +L GK
Sbjct: 60 TPTSGDVIFNGQ--PMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKK 117
Query: 684 MDKARYDKA---IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740
+A + A L+ N+ R LSGG++QR+ +ARA+ N+ +
Sbjct: 118 KPAEINSRALEMLAAVGLEHRANH-----------RPSELSGGERQRVAIARALVNNPRL 166
Query: 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL-VTHQVEFLSEVDRILVLEGGQITQS 799
L D+P +DA A ++F + T L VTH ++ + R L + G++T
Sbjct: 167 VLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLT-- 224
Query: 800 GNYQELLLAGTA 811
EL L G
Sbjct: 225 ---AELSLMGAE 233
|
Length = 233 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 9e-12
Identities = 43/120 (35%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Query: 1216 IELRQLKIRYRPNAPL---VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I++ L Y P L + +G VG++G TGSGK+TLI L L++P G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 1273 SILIDGVDICSMG--LKDLRVKLSIIPQEP--TLFRGSVRTNLD--P--LGLYSDDEIWK 1324
I+IDGVDI L D+R K+ ++ Q P LF ++ ++ P LGL S++EI
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL-SEEEIEN 121
|
Length = 287 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 1e-11
Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 18/215 (8%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSL---LYAIL----GEI-------PKISGTVNLYG 658
LR +N+ I +K+ + G GAGKSSL L+ I GEI KI G +L
Sbjct: 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKI-GLHDLRF 1360
Query: 659 SIAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
I + Q + SGS+R N+ + + D+ + A++ L ++ E + G
Sbjct: 1361 KITIIPQDPVLFSGSLRMNLDPFSQYSDEEVW-WALELAHLKTFVSALPDKLDHECAEGG 1419
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
NLS GQ+Q + LARA+ I + D+ +AVD T L + E TV+ + H
Sbjct: 1420 ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET-DNLIQSTIRTQFEDCTVLTIAH 1478
Query: 778 QVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812
++ + + R++VL+ G++ + G LL F
Sbjct: 1479 RLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIF 1513
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 1e-11
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+EL+ L Y L ++ T G + ++G +G GKTTL+ + L P G IL
Sbjct: 1 LELKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
IDG D+ G+ R + ++ Q+ LF
Sbjct: 59 IDGRDV--TGVPPERRNIGMVFQDYALF 84
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 1e-11
Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 38/233 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
+R V+ ++ + + + G VGAG++ L A+ G P SG + L G
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 660 -IAYVS----QTSWIQSGSIRDNILYGKPMDKAR---YDKAIKACALDKDINNFD---HG 708
IAYV + SI +NI +R D+ + ++ I
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL- 767
IG LSGG +Q++ LAR + D + + D+P +D A ++ ++ L
Sbjct: 395 PEQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR--LIRELA 448
Query: 768 -EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
E K +++++ ++ L + DRILV+ G+I EL E ++ A
Sbjct: 449 AEGKAILMISSELPELLGLSDRILVMREGRIV-----GELDREEATEEAIMAA 496
|
Length = 500 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-11
Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 45/215 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
V+L +K + A+ G GAGKS+L+ + G SG + + G
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79
Query: 660 -IAYVSQT-SWIQSGSIRDNILYGKPMDK-ARYDKAIKACALDKDINNFDHGDLTEIGQR 716
I V Q + + ++ +NI+ G K D+ + E+ +R
Sbjct: 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRR------------QARARIKELSER 127
Query: 717 -GLN---------LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
GL LS G++QR+++ +A+Y A + + D+P + + A LF A
Sbjct: 128 YGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLA 187
Query: 767 LEKKTVILVTHQVEFLSEV----DRILVLEGGQIT 797
E KT+I +TH+ L EV DR+ VL G++
Sbjct: 188 AEGKTIIFITHK---LKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 2e-11
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 17/220 (7%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL------GEIPKISG----TVNLY---GS 659
L+ ++ ++ Q++ + G G+GKS+LL A+L GEI +I G +V L +
Sbjct: 1235 LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEI-QIDGVSWNSVTLQTWRKA 1293
Query: 660 IAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
+ Q +I SG+ R N+ Y + D+ + K + L I F + G
Sbjct: 1294 FGVIPQKVFIFSGTFRKNLDPYEQWSDEEIW-KVAEEVGLKSVIEQFPDKLDFVLVDGGY 1352
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LS G KQ + LAR++ + A I L D+P + +D T + + + + TVIL H+
Sbjct: 1353 VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII-RKTLKQSFSNCTVILSEHR 1411
Query: 779 VEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
VE L E + LV+EG + Q + Q+LL + F+Q ++A
Sbjct: 1412 VEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSA 1451
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-11
Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 8/147 (5%)
Query: 1185 ERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGT 1244
E + F+ P P +K S+ P IE L+I P+ + + T G
Sbjct: 322 ESLVTFLETPLAHPQ-QGEKELASNDPVT--IEAEDLEI-LSPDGKTLAGPLNFTLPAGQ 377
Query: 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304
R+ +VG +G+GKT+L++AL + P GS+ I+G+++ + + R LS + Q P L
Sbjct: 378 RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH 436
Query: 1305 GSVRTNLDPLG--LYSDDEIWKVSQLT 1329
G++R N+ LG SD+++ + +
Sbjct: 437 GTLRDNV-LLGNPDASDEQLQQALENA 462
|
Length = 588 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-11
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 5/163 (3%)
Query: 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIV 1201
+ G + G + + F L+ FL Y + + +++ + +
Sbjct: 191 GVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALT---DMEKMFDLLDVEAEVS 247
Query: 1202 EDKRPPSSWPF-KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLI 1260
+ P WP G + + Y P P +L GI+ T G V +VG +G+GK+T++
Sbjct: 248 DAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTIL 306
Query: 1261 SALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
LFR + GSI IDG DI + + LR + I+PQ+ LF
Sbjct: 307 RLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLF 349
|
Length = 497 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 2e-11
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 38/198 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI------------LGEIPKISGTVNLYG-- 658
L+ +N+ + Q A+ G G GKS+ L GEI VN+
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 659 --------SIAYVSQTSWIQSGSIRDNILYG--------KPMDKARYDKAIKACALDKDI 702
I+ V Q SI +N+ YG + + + R + A++ AL ++
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV 151
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ +G NLSGGQ+QR+ +ARA+ D +I LFD+P SA+D A++ E
Sbjct: 152 KD-------RLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASI-EEL 203
Query: 763 VMAALEKKTVILVTHQVE 780
+ K T+++VTH ++
Sbjct: 204 ISDLKNKVTILIVTHNMQ 221
|
Length = 265 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 30/216 (13%)
Query: 607 ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------- 659
L L G++L+I + V GS GAGKS+LL AI G++ SG + + G
Sbjct: 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV 75
Query: 660 ------IAYVSQTSWIQSG---SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
+A V Q + +I +N+ + ++R K + AL++ + L
Sbjct: 76 AKRANLLARVFQDPLAGTAPELTIEENLA----LAESRGKKRGLSSALNERRRSSFRERL 131
Query: 711 TEIGQRGLN--------LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+G N LSGGQ+Q + L A + I L D+ +A+D TA +
Sbjct: 132 ARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELT 191
Query: 763 VMAALEKK-TVILVTHQVE-FLSEVDRILVLEGGQI 796
E K T ++VTH +E L +R+++L G+I
Sbjct: 192 AKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (162), Expect = 2e-11
Identities = 66/236 (27%), Positives = 108/236 (45%), Gaps = 28/236 (11%)
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI------------ 643
+I+ NF W L +NLDIK + A G G GKS+ L +
Sbjct: 82 EIRNFNF-WYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 644 LGEI---------PKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIK 694
GEI KIS ++ L I V Q SI DN+ YG P + D+ I
Sbjct: 141 EGEIYFLGTNTRSKKIS-SLELRTRIGMVFQKPTPFEMSIFDNVAYG-PRNNGINDRKIL 198
Query: 695 ACALDKDINNFDHGDLT--EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
++K + + D ++ + G LSGGQ+QR+ +ARA+ + ++ L D+P SA+D
Sbjct: 199 EKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDP 258
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLL 807
A + E ++ +K ++I+VTH + + D + G I ++G + + +
Sbjct: 259 IATAKI-EELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313
|
Length = 329 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVI 773
G+ ++LSGGQ+QR+ +ARA+ + ++ LFD+P SA+D + A E KT++
Sbjct: 147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 206
Query: 774 LVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+VTH++ F V ++ L G+I + G ++L
Sbjct: 207 VVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
|
Length = 257 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 31/90 (34%), Positives = 55/90 (61%), Gaps = 5/90 (5%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTH 777
LSGGQ+QR+ +ARA+ + ++ LFD+P SA+D + VM L E +T+++VTH
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK--VMQDLAEEGRTMVVVTH 210
Query: 778 QVEFLSEV-DRILVLEGGQITQSGNYQELL 806
++ F +V ++ L G+I + G +++
Sbjct: 211 EMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240
|
Length = 256 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 3e-11
Identities = 68/257 (26%), Positives = 115/257 (44%), Gaps = 45/257 (17%)
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI--LGEIPK---I 650
KI GNF +A+ R ++ I+ + G G GKS++L ++ + ++ K
Sbjct: 15 KIFYGNF-----MAV---RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRF 66
Query: 651 SGTVNLYGS---------------IAYVSQTSWIQSGSIRDNILYGKPMDKARYD----- 690
G V+ G I V Q S SI DN+ +G +++ + D
Sbjct: 67 EGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRV 126
Query: 691 -KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
A++ AL ++ + ++ GL+LSGGQ+QR+ +ARA+ + ++ L D+P SA
Sbjct: 127 KHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSA 179
Query: 750 VDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808
+D AT E +M L+K T+ LVTH ++ V I+Q L+
Sbjct: 180 LDP--IATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237
Query: 809 GTAFEQLVNAHRDAITG 825
G Q+ R+ +T
Sbjct: 238 G-PTAQIFQNPREQLTS 253
|
Length = 261 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 41/205 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS----- 667
L ++L I Q +AV G G GKS+LL +L + S L G+ A +++
Sbjct: 28 LNQLDLHIPAGQFVAVVGRSGCGKSTLL-RLLAGLETPSAGELLAGT-APLAEAREDTRL 85
Query: 668 ---------WIQSGSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
W + DN+ L G+ D A +A+ A L N +
Sbjct: 86 MFQDARLLPW---KKVIDNVGLGLKGQWRDAAL--QALAAVGLADRANEWPAA------- 133
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TV 772
LSGGQKQR+ LARA+ + + L D+P A+DA T + + ++ +L ++ TV
Sbjct: 134 ----LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM--QDLIESLWQQHGFTV 187
Query: 773 ILVTHQV-EFLSEVDRILVLEGGQI 796
+LVTH V E ++ DR+L++E G+I
Sbjct: 188 LLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 33/220 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYV 663
L GV+LD++ + +A+ G GAGKS+LL A+ GE+ SG V L G +A
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76
Query: 664 -----SQTSWIQSGSIRDNILYGK-PMDKARY---DKAIKACALDKDINNFDHGDLTEIG 714
+S ++++ + G+ P R D+ I A AL DL+ +
Sbjct: 77 RAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAA-------TDLSGLA 129
Query: 715 QRGLN-LSGGQKQRIQLAR------AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
R LSGG++QR+QLAR D+P SA+D A
Sbjct: 130 GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR 189
Query: 768 EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806
E V+ V H + ++ DRI++L G++ SG+ Q++L
Sbjct: 190 EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-11
Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 18/110 (16%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA--- 1270
+E++ L + + +A +V + G++ +G +G+VG +GSGK+ L A+ L+
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
Query: 1271 --GGSILIDGVDICSMGLKDLRV----KLSIIPQEPTLFRGSVRTNLDPL 1314
GG IL DG D+ S+ K+LR ++++I Q+P T+L+P+
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP-------MTSLNPV 104
|
Length = 316 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 4e-11
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ L RY V+ G++ + +G VG++G G+GKTT + LV+P G IL
Sbjct: 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58
Query: 1276 IDGVDICSMGLKDLRVKLSII--PQEPTLFRG-SVRTNL 1311
+DG DI + + R +L I PQE ++FR +V N+
Sbjct: 59 LDGQDITKLPM-HKRARLGIGYLPQEASIFRKLTVEENI 96
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 4e-11
Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 39/183 (21%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQTSWIQ 670
L+ ++ +IK ++ + G G GKSSL A+ G P SG + + + ++ Q ++
Sbjct: 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP 76
Query: 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730
G++R+ ++Y P D LSGG++QR+
Sbjct: 77 LGTLREQLIY--PWDDV--------------------------------LSGGEQQRLAF 102
Query: 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILV 790
AR + + D+ SA+D + L+ + TVI V H+ DR+L
Sbjct: 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQ---LLKELGITVISVGHRPSLWKFHDRVLD 159
Query: 791 LEG 793
L+G
Sbjct: 160 LDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 4e-11
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 32/218 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
++ +L I+ + + G G+GKS+++ + I G V + G
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 659 ---SIAYVSQT-SWIQSGSIRDNILYGKPMD----KARYDKAIKACALDKDINNFDHGDL 710
IA V Q+ + + ++ DN +G + + R +KA+ A + N+ H
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALR-QVGLENYAHSYP 162
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEK 769
E LSGG +QR+ LARA+ + DI L D+ FSA+D + +E V + A +
Sbjct: 163 DE-------LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215
Query: 770 KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+T++ ++H ++ + DRI +++ G++ Q G E+L
Sbjct: 216 RTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 4e-11
Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 38/195 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
++GV+L I A+ G G GKS+LL L E ++ G V L+G Y
Sbjct: 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVD 79
Query: 668 WIQSG----------------SIRDNILYGKPMDK---------ARYDKAIKACALDKDI 702
I+ +I DN+ G ++ R + A+K AL ++
Sbjct: 80 PIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV 139
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ + NLSGGQ+QR+ +ARA+ I L D+P + +D A + E
Sbjct: 140 KD-------RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKI-EEL 191
Query: 763 VMAALEKKTVILVTH 777
+ ++ T++LVTH
Sbjct: 192 LFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 5e-11
Identities = 53/216 (24%), Positives = 97/216 (44%), Gaps = 30/216 (13%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658
+ GVN ++ + G GAGK++ + + + SGT + G
Sbjct: 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVR 65
Query: 659 -SIAYVSQTSWIQSG-SIRDNI-----LYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
SI V Q + + + R+N+ LYG P D+A +A L + +L
Sbjct: 66 RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEE----RAEELLELF------ELG 115
Query: 712 EIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
E R + SGG ++R+ +A ++ + D+ D+P + +D T +++ E
Sbjct: 116 EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV 175
Query: 771 TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
T++L TH +E ++ DRI +++ G+I G +EL
Sbjct: 176 TILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 5e-11
Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 30/216 (13%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659
+ G++ + + + G GAGKS++ ILG +G + + G
Sbjct: 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARA 114
Query: 660 -IAYVSQTSWI-QSGSIRDNIL-YGKPMD-KARYDKAIKACALDKDINNFDHGDLTEIGQ 715
I V Q + ++R+N+L +G+ R +A+ L+ F + ++
Sbjct: 115 RIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLE-----FARLE-SKADA 168
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVIL 774
R +LSGG K+R+ LARA+ ND + + D+P + +D H A L E + + L + KT++L
Sbjct: 169 RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILL 227
Query: 775 VTHQVEFLSEV----DRILVLEGGQITQSGNYQELL 806
TH F+ E DR+ VLE G+ G L+
Sbjct: 228 TTH---FMEEAERLCDRLCVLEAGRKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 6e-11
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 19/143 (13%)
Query: 1198 PAIVEDKRPPSSWPFKGRIE----LRQLKIRYRP---------NAPLVLKGITCTFSEGT 1244
P + ++K R E +R L RY + ++ EG
Sbjct: 259 PRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGE 318
Query: 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG--VDICSMGLKDLRVKLSIIPQEPTL 1302
+G+VG +GSGK+TL L L+ P+ GSI+ DG +D+ L+ LR ++ ++ Q+P
Sbjct: 319 TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378
Query: 1303 F---RGSVRTNL-DPLGLYSDDE 1321
R +V L +PL ++
Sbjct: 379 SLNPRMTVGDILAEPLRIHGGGS 401
|
Length = 539 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 6e-11
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 1215 RIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
+ +R L I Y A L ++ G +G+VG +GSGK+TL L L +P+ G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1273 SILIDGVDICSMG-LKDLRVKLSIIPQEPT 1301
SIL+DG + K + ++ Q+P
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPY 92
|
Length = 252 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 6e-11
Identities = 58/234 (24%), Positives = 107/234 (45%), Gaps = 36/234 (15%)
Query: 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSL---LYAIL--------- 644
I+ N S+ P L +NL IK + I + G G+GKS+L L +L
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61
Query: 645 -----GEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGK------PMD-KARYDKA 692
G+ K+ G L G + +T ++ ++ +++ +G P++ + R D+A
Sbjct: 62 SGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR-TVEEDLAFGPENLCLPPIEIRKRVDRA 120
Query: 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
+ L+K + H + LSGGQ Q + LA + + + +FD+ S +D
Sbjct: 121 LAEIGLEK----YRH-------RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDP 169
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ + + KT++ +TH +E L + DRI+V++ G+I G + +L
Sbjct: 170 DSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223
|
Length = 274 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 6e-11
Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 55/251 (21%)
Query: 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
D +KI+ NF + L+ +N+D Q A+ G G GKS+LL A+ +S
Sbjct: 2 DPKIKIRGVNFFYHKH---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVS 58
Query: 652 GT--------------------VNLYGSIAYVSQTSWIQSGSIRDNILYGKPM----DKA 687
G VNL + V Q SI DN+ +G M ++
Sbjct: 59 GARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQS 118
Query: 688 RYD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743
R D K+++ AL ++ + H + GL LSGGQ+QR+ +AR + + ++ L
Sbjct: 119 RLDEVVEKSLRQAALWDEVKDNLH-------KSGLALSGGQQQRLCIARVLAIEPEVILM 171
Query: 744 DDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802
D+P SA+D +T+ E +M L++ T+ +VTH ++ Q ++ ++
Sbjct: 172 DEPCSALDP--VSTMRIEELMQELKQNYTIAIVTHNMQ--------------QAARASDW 215
Query: 803 QELLLAGTAFE 813
LL G E
Sbjct: 216 TGFLLTGDLVE 226
|
Length = 251 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 8e-11
Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 41/222 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
L +N +IAV G GAGKS+L G + SG+V + G
Sbjct: 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKF 79
Query: 660 IAYVSQTS--WIQSGSIRDNILYGKPMD--------KARYDKAIKACALDKDINNFDHGD 709
+ V Q I S ++ +I +G P++ R A+ L++ + H
Sbjct: 80 VGLVFQNPDDQIFSPTVEQDIAFG-PINLGLDEETVAHRVSSALHMLGLEELRDRVPH-- 136
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+LSGG+K+R+ +A + + + + D+P + +D L + + L +
Sbjct: 137 ---------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELID--FLNDLPE 185
Query: 770 K---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLL 807
TVI THQ++ + E+ D I V++ G+I G +E+ L
Sbjct: 186 TYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227
|
Length = 277 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 8e-11
Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 20/120 (16%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-----KTVIL 774
LSGGQ+QR+ +ARA+ N + L D+P A+D+H+ E VMA L + TVI+
Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG-----EEVMAILHQLRDRGHTVII 199
Query: 775 VTHQVEFLSEVDRILVLEGGQITQSGNYQE----------LLLAGTAFEQLVNAHRDAIT 824
VTH + ++ +R++ + G+I ++ QE ++ + + Q V+ R+A+T
Sbjct: 200 VTHDPQVAAQAERVIEIRDGEIVRNPPAQEKVNVAGGTEPVVNTASGWRQFVSGFREALT 259
|
Length = 648 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 8e-11
Identities = 54/227 (23%), Positives = 104/227 (45%), Gaps = 48/227 (21%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
++K+ +F +D + L GV+++I ++ A+ G G GKS+ L L + ++
Sbjct: 7 AIKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKC-LNRMNELESE 62
Query: 654 VNLYGSIAYVSQTSW---------------------IQSGSIRDNILYGKPM----DKAR 688
V + G + + +Q + + S+ DN+ YG + K
Sbjct: 63 VRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLE 122
Query: 689 YD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
D A+K L +I + +I + L+LSGGQ+QR+ +ARA+ + L D
Sbjct: 123 IDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQQRLCIARALAVKPKVLLMD 175
Query: 745 DPFSAVDAHTAATLFNECVMAALEKK---TVILVTHQVEFLSEVDRI 788
+P +D A++ E ++ +L + T+++V+H L +V R+
Sbjct: 176 EPCFGLDP--IASMKVESLIQSLRLRSELTMVIVSHN---LHQVSRL 217
|
Length = 261 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 9e-11
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + RY V + ++G + ++G +GSGKTT + + RL+EP G I
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
IDG DI +LR K+ + Q+ LF
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLF 87
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 9e-11
Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 40/223 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659
L V+L ++ + +A+ G GAGKS+LL A+ GE+ SG V L G
Sbjct: 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARR 77
Query: 660 IAYVSQTSWIQ-SGSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
A + Q S + ++ + + + +A D A+ A AL + DL +
Sbjct: 78 RAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAE-DDALVAAALAQ-------VDLAHLAG 129
Query: 716 RG-LNLSGGQKQRIQLARA---VYNDADI--YLF-DDPFSAVD-AH---TAATLFNECVM 764
R LSGG++QR+QLAR ++ +L D+P SA+D AH
Sbjct: 130 RDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE 189
Query: 765 AALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806
L VI+V H + + DRI++L G++ G E+L
Sbjct: 190 RGL---AVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 1221 LKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVD 1280
+ Y+ +L ++ G + + G+ G+GKTTL L L++ + GSIL++G
Sbjct: 5 ISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKP 63
Query: 1281 ICSMGLKDLRVKLSIIPQEPT--LFRGSVRTNLDP 1313
I + K+ R + + Q+ LF SVR L
Sbjct: 64 IKA---KERRKSIGYVMQDVDYQLFTDSVREELLL 95
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE++ L + VLKGI T +G V ++G +GSGK+TL+ + L EP G+I+
Sbjct: 1 IEIKNLHKSFGDFH--VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 1276 IDGVDICSMG--LKDLRVKLSIIPQEPTLF 1303
IDG+ + + +LR K+ ++ Q+ LF
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLF 88
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 1e-10
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+++R L Y+ + ++ +G G++G G+GKTT + L + P G+
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
I+G I + K R L PQ LF
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALF 87
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
V+ ++ + G VG++G G+GKTT + LV P G IL+D DI + + R
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPM-HKRA 77
Query: 1292 KLSI--IPQEPTLFRG-SVRTNL 1311
+L I +PQE ++FR +V N+
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNI 100
|
Length = 243 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 1e-10
Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 60/237 (25%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--KISG--------TVNLYGSIAY 662
L V+L+I + +A+ G G+GKS+LL + G I K +G TV G +A
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 663 VSQTSWIQSG------------SIRDNILYG---------------KPMDKARYDKAIKA 695
+ S +G S+ +N+L G K R +A+
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTR 139
Query: 696 CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755
+ +F H QR LSGGQ+QR+ +ARA+ A + L D+P +++D +A
Sbjct: 140 VGM----VHFAH-------QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA 188
Query: 756 ATLFNECVMAAL------EKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQEL 805
VM L + TV++ HQV++ L +RI+ L G + G+ Q+
Sbjct: 189 -----RIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240
|
Length = 262 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 45/214 (21%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L +NL+I + + + G G+GK++LL I G G++ + G
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80
Query: 659 --SIAYVSQ-----TSWIQSGSIR------DNILYGKPMDKARYDKAIKACALDKDINNF 705
+I Y+ Q +++ N+ Y + ++AR ++A L ++ +
Sbjct: 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERAR--AMLEAVGLGDHLDYY 138
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA---ATLFNEC 762
H NLSGGQKQR+ +ARA+ + + L D+P +A+D+ + L +
Sbjct: 139 PH-----------NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQK- 186
Query: 763 VMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796
+A + T+++VTH L DRI+ +E G++
Sbjct: 187 -LAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 26/207 (12%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYGSIAYVSQTSWIQSG-S 673
+ LD + + + G GAGKSSLL + L E+P+ SGT+N+ G+ S+T ++
Sbjct: 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTPSDKAIRE 79
Query: 674 IRDNI------------------LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
+R N+ L P K AL + + L
Sbjct: 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQ---ALARAEKLLERLRLKPYAD 136
Query: 716 R-GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL 774
R L+LSGGQ+QR+ +ARA+ + + LFD+P +A+D A + + A T ++
Sbjct: 137 RFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVI 196
Query: 775 VTHQVEFLSEV-DRILVLEGGQITQSG 800
VTH+VE + R++ +E G I + G
Sbjct: 197 VTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 74/212 (34%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTV----------NLYGSI 660
L+ V+ K + A+ G GAGKS+LL A+ G +SG V + I
Sbjct: 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKII 84
Query: 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT--------- 711
YV Q D+IL H LT
Sbjct: 85 GYVPQ----------DDIL---------------------------HPTLTVRETLMFAA 107
Query: 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-- 769
++ RGL SGG+++R+ +A + ++ + D+P S +D+ +A VM+ L +
Sbjct: 108 KL--RGL--SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ-----VMSLLRRLA 158
Query: 770 ---KTVILVTHQV--EFLSEVDRILVLEGGQI 796
+T+I HQ E D++L+L G++
Sbjct: 159 DTGRTIICSIHQPSSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 1e-10
Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 43/222 (19%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
++K+++ +F ++ AI G+++DI + A+ G G GKS+ + L I ++ G
Sbjct: 7 AIKVKDLSFYYNTSKAI---EGISMDIYRNKVTAIIGPSGCGKSTFI-KTLNRISELEGP 62
Query: 654 VNLYGSIAYVSQTSW----------IQSG-----------SIRDNILYG----KPMDKAR 688
V + G + + Q + Q G SI +N+ YG + +A
Sbjct: 63 VKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQAD 122
Query: 689 YDK----AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
D+ A+K AL +++ + ++ + L LSGGQ+QR+ +ARA+ + L D
Sbjct: 123 LDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQQRLCIARALAIKPKVLLMD 175
Query: 745 DPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSEV 785
+P SA+D AT+ E ++ +L + T+ +VTH ++ + V
Sbjct: 176 EPCSALDP--IATMKVEELIHSLRSELTIAIVTHNMQQATRV 215
|
Length = 259 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 21/206 (10%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---------IAYV 663
+ ++ ++ + + G GAGK++ ILG + G + G I Y+
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYL 77
Query: 664 -SQTSWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
+ ++ D + Y K M KA K ++A +I + E
Sbjct: 78 PEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKE------- 130
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779
LS G +Q+IQ AV ++ ++ + D+PFS +D L + E T+I +H++
Sbjct: 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM 190
Query: 780 EFLSEV-DRILVLEGGQITQSGNYQE 804
E + E+ DR+L+L+ GQ G ++
Sbjct: 191 EHVEELCDRLLMLKKGQTVLYGTVED 216
|
Length = 300 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 1e-10
Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 39/225 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAY----- 662
L+ VNLDI A+ G G GKS+ + + L + G + L G Y
Sbjct: 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78
Query: 663 ----------VSQTSWIQSGSIRDNILYG------KPMDK--ARYDKAIKACALDKDINN 704
V Q SI DN+ YG D R ++++KA AL ++ +
Sbjct: 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD 138
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
++ + L LSGGQ+QR+ +AR + ++ L D+P SA+D +T E ++
Sbjct: 139 -------KLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDP--ISTTKIEDLI 189
Query: 765 AALEKK-TVILVTHQVEFLSEVDRIL-VLEGGQITQSGNYQELLL 807
L++ T+++VTH ++ + V + G+I +SG ++ +
Sbjct: 190 HKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFI 234
|
Length = 250 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM---AALEKKTVILVT 776
LSGGQ+QR+ +ARA+ + LFD+ SA+D + N V+ A+ T++LVT
Sbjct: 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN--VIRRLASEHDLTMLLVT 204
Query: 777 HQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
H++ F E DR+ + G+I + G E+
Sbjct: 205 HEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 65/225 (28%), Positives = 99/225 (44%), Gaps = 54/225 (24%)
Query: 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-- 643
ISLQ +V I G F ++ V DI + A+ G G GKS++L ++
Sbjct: 14 ISLQ----NVTISYGTFE--------AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNR 61
Query: 644 ---LGEIPKISGTV-----NLYGS----------IAYVSQTSWIQSGSIRDNILYGK--- 682
L E + G V +LY I V Q SI +NI +G
Sbjct: 62 MNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARIN 121
Query: 683 ----PMDKARYDKAIKACALD--KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736
MD+ KA D KD ++ + G +LSGGQ+QR+ +AR +
Sbjct: 122 GYTGDMDELVERSLRKAAVWDECKD----------KLNESGYSLSGGQQQRLCIARTIAI 171
Query: 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVE 780
+ ++ L D+P SA+D +TL E M L+K T+++VTH ++
Sbjct: 172 EPEVILMDEPCSALDP--ISTLKIEETMHELKKNFTIVIVTHNMQ 214
|
Length = 269 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 39/187 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAY 662
G++ + + + + G G+GK++LL I G +P +GT+ L G + Y
Sbjct: 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHY 77
Query: 663 VSQTSWIQSG-----SIRDNI-----LYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+ ++ ++ +N+ G ++ A++A L L
Sbjct: 78 LGH----RNAMKPALTVAENLEFWAAFLGG--EELDIAAALEAVGL---------APLAH 122
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-T 771
+ LS GQK+R+ LAR + ++ I++ D+P +A+DA A LF E + A L +
Sbjct: 123 L--PFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVA-LFAELIRAHLAQGGI 179
Query: 772 VILVTHQ 778
VI TH
Sbjct: 180 VIAATHI 186
|
Length = 207 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 47/244 (19%)
Query: 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI--LGEI--- 647
R +K+ G + L GVNL+I A+ G G+GKS+LL L E+
Sbjct: 7 RDLKVSFGQ--------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPE 58
Query: 648 PKISGTVNLYGS-------------IAYVSQT-SWIQSGSIRDNILYGKPMDK------- 686
++SG V L G + V Q + I + SI +N+ G +++
Sbjct: 59 ARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKE 118
Query: 687 --ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
R A++ L ++ + + LSGGQ+QR+ +ARA+ ++ L D
Sbjct: 119 LQERVRWALEKAQLWDEVKD-------RLDAPAGKLSGGQQQRLCIARALAFQPEVLLAD 171
Query: 745 DPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNY 802
+P + +D A + E + L+K T++LVTH + + + D + L GQI + G
Sbjct: 172 EPTANLDPENTAKI--ESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPT 229
Query: 803 QELL 806
+E+
Sbjct: 230 REVF 233
|
Length = 250 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 54/218 (24%), Positives = 90/218 (41%), Gaps = 50/218 (22%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658
LR V+ I + + + G GAGKS+LL I GE G + + G
Sbjct: 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75
Query: 659 ----SIAYVSQT-SWIQSGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDHG 708
I V Q + ++ +N+ GKP + R + LD
Sbjct: 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE---VLD--------- 123
Query: 709 DLTEIGQRGLN----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
L + + LSGG++QR+ +ARA+ N + L D+P +D + +M
Sbjct: 124 -LVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS-----WEIM 177
Query: 765 AALEK-----KTVILVTHQVEFLSEVD-RILVLEGGQI 796
E+ TV++ TH +E ++ + R+L LE G++
Sbjct: 178 RLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-10
Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 44/216 (20%)
Query: 616 VNLDIKWAQKI-AVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------------- 659
VNL + AQ I A+ G GAGK+SL+ AI G G + L G
Sbjct: 17 VNLTLP-AQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75
Query: 660 --IAYVSQTSWI-QSGSIRDNILYG-KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
I YV Q + + +R N+ YG A++DK + ++ ++ +
Sbjct: 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPG-------- 127
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-----K 770
+LSGG+KQR+ + RA+ ++ L D+P +++D L + LE+
Sbjct: 128 ---SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREL-----LPYLERLAREIN 179
Query: 771 TVIL-VTHQV-EFLSEVDRILVLEGGQITQSGNYQE 804
IL V+H + E L DR++VLE G++ G +E
Sbjct: 180 IPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE 215
|
Length = 352 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 45/222 (20%)
Query: 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-----------IAYVSQ 665
+L ++ +++A+ G GAGKS+LL I G + SG++ L G ++ + Q
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 666 TSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR-GLN---- 719
+ + S ++ NI G + +K +N L I ++ G+
Sbjct: 79 ENNLFSHLTVAQNIGLG-------LNPGLK-------LNAAQREKLHAIARQMGIEDLLA 124
Query: 720 -----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA---HTAATLFNE-CVMAALEKK 770
LSGGQ+QR+ LAR + + I L D+PFSA+D TL ++ C L
Sbjct: 125 RLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQL--- 181
Query: 771 TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTA 811
T+++V+H +E + + R LV+ G+I G E LL+G A
Sbjct: 182 TLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDE-LLSGKA 222
|
Length = 232 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 55/202 (27%), Positives = 89/202 (44%), Gaps = 36/202 (17%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYA------------ILGEI----PKISGT-- 653
L + + I + A+ G G GKS+LL I G+I I +
Sbjct: 21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80
Query: 654 --VNLYGSIAYVSQTSWIQSGSIRDNILYGKPM----DKARYD----KAIKACALDKDIN 703
V L I V Q SI +N+ YG + +K D K++K AL ++
Sbjct: 81 DVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK 140
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ H L+LSGGQ+QR+ +AR + + ++ L D+P SA+D A + +
Sbjct: 141 DRLH-------DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP-IATAKIEDLI 192
Query: 764 MAALEKKTVILVTHQVEFLSEV 785
++ TVI+VTH ++ + V
Sbjct: 193 EDLKKEYTVIIVTHNMQQAARV 214
|
Length = 253 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 32/194 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS- 671
L+ +NLDI + A+ G G GKS+ + L + ++ +V G I Y Q + +S
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKT-LNRMVELVPSVKTTGKILYRDQNIFDKSY 98
Query: 672 --------------------GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
SI DN+ YG P DK ++K + D
Sbjct: 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYG-PKIHGIKDKKTLDEIVEKSLRGAAIWD-- 155
Query: 712 EIGQR----GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
E+ R LSGGQ+QR+ +AR + + D+ L D+P SA+D +TL E ++ L
Sbjct: 156 ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDP--ISTLKVEELVQEL 213
Query: 768 EKK-TVILVTHQVE 780
+K ++I+VTH ++
Sbjct: 214 KKDYSIIIVTHNMQ 227
|
Length = 271 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 4e-10
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + RY + + T EG + ++G +GSGKTT + + RL+EP G IL
Sbjct: 2 IEFENVSKRY--GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
IDG DI + +LR K+ + Q+ LF
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLF 87
|
Length = 309 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 37/194 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
L V+LDI A G G GKS+ L + + +++G + L G Y +
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 668 WIQ---------------SGSIRDNILYGKPM-----DKARYD----KAIKACALDKDIN 703
++ SI +N+ YG + KA D +++ L +++
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ + + G LSGGQ+QR+ +ARA+ ++ L D+P SA+D A + E +
Sbjct: 155 D-------RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV-EELI 206
Query: 764 MAALEKKTVILVTH 777
+ T+++VTH
Sbjct: 207 DELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 5e-10
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
KG IE R + Y L+ I G V +VGR+GSGK+T+ + L R + G
Sbjct: 339 KGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEG 398
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL--DPLGLYSDDEIWKVSQL 1328
IL+DG D+ L LR +++++ Q LF ++ N+ YS ++I + +++
Sbjct: 399 EILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARM 456
|
Length = 582 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 5e-10
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
++L L RY L G++ T G G++G G+GKTTL+ L L P+ G+I
Sbjct: 1 LQLENLTKRYGKK--RALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
IDG D+ K LR ++ +PQE ++
Sbjct: 58 IDGQDVLKQPQK-LRRRIGYLPQEFGVY 84
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 5e-10
Identities = 58/221 (26%), Positives = 104/221 (47%), Gaps = 41/221 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ-- 670
L+G++L I K A+ G GAGKS+LL + G G V + G W++
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
Query: 671 -------------SGSIRDNILYGKPMD--------KARYDKAIKACALDKDINNFDHGD 709
S ++ D++ +G P++ + R ++A+KA + +F
Sbjct: 81 VGLVFQDPDDQVFSSTVWDDVAFG-PVNMGLDKDEVERRVEEALKAV----RMWDFRD-- 133
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+ +LS GQK+R+ +A + D D+ + D+P + +D TL ++ L
Sbjct: 134 -----KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLME--ILDRLHN 186
Query: 770 --KTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807
KTVI+ TH V+ +E D+++VL+ G++ G+ + LL
Sbjct: 187 QGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGD-KSLLT 226
|
Length = 274 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 6e-10
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
+E+ + + VL+ I + +G V ++G +G GK+TL+ + L +P G
Sbjct: 1 MALLEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG 58
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
+L+DG + + + QE L
Sbjct: 59 EVLLDG-----RPVTGPGPDIGYVFQEDALL 84
|
Length = 248 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 6e-10
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
IEL+ + + + L ++ G GV+G +G+GK+TLI + L P G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1274 ILIDGVDICSMGLKDLR 1290
+L+DG D+ ++ K+LR
Sbjct: 62 VLVDGQDLTALSEKELR 78
|
Length = 343 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 6e-10
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + Y PN L GI + S G V +VG +G+GK+TL+ +++ P G+I
Sbjct: 1 IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 1276 IDGVDICSMGLKD-----LRVKLSIIPQE 1299
++G D+ L+ LR K+ ++ Q+
Sbjct: 60 VNGQDVS--DLRGRAIPYLRRKIGVVFQD 86
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 7e-10
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 11/102 (10%)
Query: 1216 IELRQLKIRYRPNAP---LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I ++++ RY+ P L + + G+ V ++G TGSGK+TL+ L L++P G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 1273 SILIDGVDICSMG-----LKDLRVKLSIIPQ--EPTLFRGSV 1307
++ I G + + G LK LR K+ I+ Q E LF +V
Sbjct: 63 TVTI-GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETV 103
|
Length = 290 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 7e-10
Identities = 58/233 (24%), Positives = 97/233 (41%), Gaps = 48/233 (20%)
Query: 600 GNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658
G+FS D + + A+ G G+GK++L+ I G G + L G
Sbjct: 10 GDFSLD----------ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGR 59
Query: 659 ----------------SIAYVSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
I YV Q S+R N+ YG M +AR + + +
Sbjct: 60 TLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYG--MKRARPSERRISFERVIE 117
Query: 702 INNFDHGDLTEIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
+ H + R LSGG+KQR+ + RA+ + + L D+P +A+D
Sbjct: 118 LLGIGH-----LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD----DPRKY 168
Query: 761 ECVMAALEKKT------VILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
E ++ LE+ ++ V+H + E L DR++VLE G++ +G E+
Sbjct: 169 E-ILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 7e-10
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 42/196 (21%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLL------YAILGEIPKISGTVNLYGS------- 659
L+ +NLDI Q A G G GKS+LL Y + E + G + L G
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQ-RAEGEILLDGENILTPKQ 87
Query: 660 --------IAYVSQTSWIQSGSIRDNILYG---------KPMDKARYDKAIKACALDKDI 702
+ V Q SI DNI +G MD+ R + A+ AL ++
Sbjct: 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDE-RVEWALTKAALWNEV 146
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ ++ Q G +LSGGQ+QR+ +AR + ++ L D+P SA+D + + E
Sbjct: 147 KD-------KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRI--EE 197
Query: 763 VMAAL-EKKTVILVTH 777
++ L + TV++VTH
Sbjct: 198 LITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 8e-10
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
+E+R + Y A L+ I+ + EG V +VG +G GK+TL+ + L P G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
+L+DG + + Q+ L
Sbjct: 61 VLVDGEPVT-----GPGPDRGYVFQQDALL 85
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 9e-10
Identities = 57/213 (26%), Positives = 91/213 (42%), Gaps = 38/213 (17%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658
L G+N+ I + + + G GAGKS+LL I E SGT+ + G
Sbjct: 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAI 73
Query: 659 -----SIAYVSQTS-WIQSGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDH 707
I V Q + ++ +N+ + G P + R K + A AL+ + H
Sbjct: 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIR--KRVPA-ALELVGLSHKH 130
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA---ATLFNECVM 764
L LSGG++QR+ +ARA+ N I + D+P +D T L +
Sbjct: 131 RALPA------ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK 184
Query: 765 AALEKKTVILVTHQVEFLSEVD-RILVLEGGQI 796
A TV++ TH E + R++ LE G++
Sbjct: 185 AGT---TVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 9e-10
Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 41/209 (19%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVN 655
+F + A L ++L+ + Q A+ G G GKS+ L + L ++ G +
Sbjct: 13 SFFYGDFQA---LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL 69
Query: 656 LYGSIAY---------------VSQTSWIQSGSIRDNILYGKPM----DKA----RYDKA 692
L G Y V Q SI +N+ YG + DKA R +++
Sbjct: 70 LDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERS 129
Query: 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
++ AL ++ + + + L LSGGQ+QR+ +ARA+ + ++ L D+P SA+D
Sbjct: 130 LRHAALWDEVKD-------RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182
Query: 753 HTAATLFNECVMAALEKK-TVILVTHQVE 780
AT E ++ L+ + T+I+VTH ++
Sbjct: 183 --IATQKIEELIHELKARYTIIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I + + +VL ++ +G ++G G+GK+TL+S + RL++ G I
Sbjct: 2 ITIEN--VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQE 1299
IDG+++ S K+L KLSI+ QE
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQE 83
|
Length = 252 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 31/222 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
+ V+L+++ + + + G GAGK++L I G SGTV G
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 660 -IAYVSQTSWIQSG-SIRDNIL--------YGKPMDKARYDKAIKACALDKDINNFDHGD 709
IA Q + + G ++ +N+ + + R K + A ++ +
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEERE-ARERARELLEFVG 138
Query: 710 LTE-IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF---SAVDAHTAATLFNECVMA 765
L E + NLS GQ++R+++ARA+ + L D+P + + A L E +
Sbjct: 139 LGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRE--LR 196
Query: 766 ALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T++L+ H ++ + + DRI+VL G++ G +E+
Sbjct: 197 DRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238
|
Length = 250 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 38/194 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISG------------TVN 655
++G+++ + + A+ G G+GKS+ L ++ +I +++G +N
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 656 LY---GSIAYVSQTSWIQSGSIRDNILYGKPM----DKARYDK----AIKACALDKDINN 704
+Y I V Q + SI +NI + DK D+ ++K AL + +
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD 155
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
++ + L LSGGQ+QR+ +ARA+ DI L D+P SA+D + L E M
Sbjct: 156 -------DLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQL--EETM 206
Query: 765 AALEKK-TVILVTH 777
L+K T+I+VTH
Sbjct: 207 FELKKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 29/218 (13%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659
+ GV++ + G G+GKS+LL + G + +GTV+L G
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 660 --IAYVSQTSWIQSG-SIRDNILYGK-------PMDKARYDKAIKACALDKDINNFDHGD 709
+A V Q S ++RD + G+ D + ++++ D
Sbjct: 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD 134
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
++ LSGG++QR+ +ARA+ + + L D+P + +D A
Sbjct: 135 MS-------TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATG 187
Query: 770 KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
TV+ H + + D ++VL+GG++ +G +E+L
Sbjct: 188 VTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 39/224 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL---GEIP--KISGTVNLYGSIAY----- 662
++ V + I Q A+ G G GK++LL +I IP ++ G + G Y
Sbjct: 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLD 78
Query: 663 ----------VSQTSWIQSGSIRDNILYGKPM----DKARYD----KAIKACALDKDINN 704
V Q SI DN+ +G + K + D +++K AL ++ +
Sbjct: 79 VTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS 138
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
E+ + G LSGGQ+QR+ +ARA+ + ++ L D+P SA+D AT E ++
Sbjct: 139 -------ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP--IATQRIEKLL 189
Query: 765 AAL-EKKTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
L E T+++VTH + + + D I + G++ + G +E++
Sbjct: 190 EELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233
|
Length = 250 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 1e-09
Identities = 73/398 (18%), Positives = 128/398 (32%), Gaps = 63/398 (15%)
Query: 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSS 1000
+ G+ + +F F A+ G+ I AP+ D ++ L+
Sbjct: 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTH 118
Query: 1001 DLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMV-------------- 1046
D+ ++ F +A + I + +++ + + I A++
Sbjct: 119 DIDQIN-AFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGF 177
Query: 1047 ----AVR----FVQRYYIATAREL--IRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096
A R + A A ++I+G + + + I ++++
Sbjct: 178 KFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRR--LSFAHGAIQESANNIADLHIIEI- 234
Query: 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLS 1156
+ L F L LF AA+F + A L L
Sbjct: 235 --LIFIAAENFGQLLFFL-------------LIGCALFAAAMFASIDAAAISAFVLALL- 278
Query: 1157 LSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI--PPEPPAIVEDKR------PPS 1208
+ G L LA I+ +R+ F PEP + D
Sbjct: 279 -----YIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDK 333
Query: 1209 SWPFKGRIELRQLKIRYRP---NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFR 1265
S IEL+ + + + + L I ++G V +VG G GK+TL
Sbjct: 334 SV---DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG 390
Query: 1266 LVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
L P G IL+DG + + D R S I + LF
Sbjct: 391 LYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLF 428
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 1216 IELRQLKIRYR--PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
IEL+ + Y LK + G V +VG +GSGK+TL++ L L +P G
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 1274 ILIDGVDICSMGLKDL----RVKLSIIPQ 1298
+LI+G D+ + K+L R K+ + Q
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQ 90
|
Length = 226 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 17/121 (14%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
IEL+ + + V LK ++ + +G G++GR+G+GK+TLI + L P GS
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1274 ILIDGVDICSMGLKDLRV---KLSIIPQEPTLFRGSVRTNLD----PLGLYSDDEIWKVS 1326
+L+DG D+ + K+LR ++ +I Q L S RT + PL EI V
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLL--SSRTVFENVALPL------EIAGVP 113
Query: 1327 Q 1327
+
Sbjct: 114 K 114
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 2e-09
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 16/91 (17%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD-AHTAATLFNECVMAALEKK------- 770
LSGGQKQR+ +ARA+ ++ + L D+ SA+D A T + L L K
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL-------ELLKDINRELGL 192
Query: 771 TVILVTHQVEFLSEV-DRILVLEGGQITQSG 800
T++L+TH+++ + + DR+ V++ G++ + G
Sbjct: 193 TIVLITHEMDVVKRICDRVAVIDAGRLVEQG 223
|
Length = 343 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 47/221 (21%)
Query: 607 ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658
E + L GV L +K + IA+ G G+GKS+LL + G SG V+L G
Sbjct: 20 EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDE 79
Query: 659 ---------SIAYVSQT-SWIQSGSIRDNI-----LYGKPMDKARYDKAIKACALDKDIN 703
+ +V Q+ I + + +N+ L G+ ++R A AL + +
Sbjct: 80 EARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNG----AKALLEQLG 135
Query: 704 NFDHGDLTEIGQR----GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT----A 755
+G+R LSGG++QR+ LARA D+ D+P +D T A
Sbjct: 136 ---------LGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIA 186
Query: 756 ATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796
LF+ + T+ILVTH ++ + DR L L GQ+
Sbjct: 187 DLLFS---LNREHGTTLILVTHDLQLAARCDRRLRLVNGQL 224
|
Length = 228 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 2e-09
Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 28/217 (12%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
L V+ ++ + + G GAGK++L I G + SG+V G
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 660 -IAYVSQTSWI-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
I Q + ++ +N++ +A +++ L +G
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD 135
Query: 718 L------NLSGGQKQRIQLARAVYNDADIYLFDDPF---SAVDAHTAATLFNECVMAALE 768
L LS GQ++R+++ARA+ D + L D+P + + A L E
Sbjct: 136 LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE---LRER 192
Query: 769 KKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQE 804
TV+LV H ++ + + DR+ VL+ G++ G E
Sbjct: 193 GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 44/240 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
++ VNLD++ A+ G G GK++ L AI L +++G + L G Y +
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 668 WIQSGSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGL------ 718
+ + R +++ KP + +D + L I + DH L E+ +R L
Sbjct: 80 PV-AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKL-AGIRDRDH--LMEVAERSLRGAALW 135
Query: 719 ------------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
LSGGQ+QR+ +ARA+ + +I L D+P SA+D + A + E +M
Sbjct: 136 DEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI--EDLMTD 193
Query: 767 LEK-KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAIT 824
L+K T+I+VTH + + V D G + + G +QL RD T
Sbjct: 194 LKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHG----------PTDQLFTNPRDERT 243
|
Length = 252 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 55/231 (23%), Positives = 114/231 (49%), Gaps = 35/231 (15%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT-- 666
+ ++G++ DI+ + +A+ G G+GKS +ILG +P + GSI + +
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS-PAAAHPSGSILFDGEDLL 80
Query: 667 --SWIQSGSIRDN---ILYGKPM--------------DKARYDKAI-KACALDKDINNFD 706
S Q +R N +++ +PM + R + + +A A + + +
Sbjct: 81 AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLE 140
Query: 707 HGDLTEIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ E +R L+ LSGGQ+QR+ +A A+ N+ D+ + D+P +A+D A + +
Sbjct: 141 LVGIPEPEKR-LDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD- 198
Query: 762 CVMAALEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLA 808
++ L+ + ++ +TH + + + DR+ V++ G+I ++G + L A
Sbjct: 199 -LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAA 248
|
Length = 534 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 65/237 (27%), Positives = 106/237 (44%), Gaps = 31/237 (13%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLL--YAILGE-IP--KISGTVNLYGSIAYVSQTSWI- 669
V+L I + IA G G GKS+LL + + + IP K+ G + Y SQ + +
Sbjct: 39 VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVK 98
Query: 670 ---QSG-----------SIRDNILYGKPMD--KARYDKAIKACALDKDINNFDHGDLTEI 713
Q G SI +NI + + K D+ ++ I L E
Sbjct: 99 LRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKE- 157
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVI 773
+G LSGGQ+QR+ +ARA+ D+ L D+P SA+D + + E + E+ T+I
Sbjct: 158 --KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQV-EELCLELKEQYTII 214
Query: 774 LVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA-----HRDAITG 825
+VTH ++ S V +I + G + L+ + EQ+ + R+ I+G
Sbjct: 215 MVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEAREYISG 271
|
Length = 274 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 56/235 (23%), Positives = 112/235 (47%), Gaps = 38/235 (16%)
Query: 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ 665
P+ A L+ V+ + + +A+ G G+GKS+L + G + +GT+ + G + +
Sbjct: 16 PDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGG-MVLSEE 74
Query: 666 TSW---------IQS-------GSIRDNILY-----GKPMDK--ARYDKAIKACALDKDI 702
T W Q+ +++D++ + G P ++ R D+A++ ++ +
Sbjct: 75 TVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFL 134
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
N H LSGGQKQR+ +A + DI + D+ S +D + E
Sbjct: 135 NREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVL-ET 182
Query: 763 VMAALEKK--TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
V E+K TV+ +TH ++ ++ DR++V+ G+I + G +E+ +G +++
Sbjct: 183 VRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGHMLQEI 237
|
Length = 279 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 42/221 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAY-------VS 664
L+G+N + + +A+ G GAGKS+L G + SG V + G I Y V
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR 77
Query: 665 QTSWIQ---------SGSIRDNILYGKPMD--------KARYDKAIKACALDKDINNFDH 707
+T I + ++ +++ +G P++ + R +A+KA ++ N H
Sbjct: 78 KTVGIVFQNPDDQLFAPTVEEDVAFG-PLNLGLSKEEVEKRVKEALKAVGMEGFENKPPH 136
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
+LSGGQK+R+ +A + +I + D+P S +D A+ + ++ L
Sbjct: 137 -----------HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMK--LLYDL 183
Query: 768 EKK--TVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805
K+ T+I+ TH V+ + D++ V+ G+I + G +E+
Sbjct: 184 NKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 1216 IELRQLKIRYRPNAP--LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
IEL+ L Y LKG++ + +G V +VG +GSGK+TL++ L L P G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 1274 ILIDGVDICSMGLKDL----RVKLSIIPQEPTL 1302
+ +DG DI + K+L R + + Q L
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+EL+Q+ Y +L I+ + G + + G +G GK+TL+ + L+ P G++L
Sbjct: 4 LELKQV--GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
+G D+ ++ + R ++S Q P LF +V NL
Sbjct: 62 FEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNL 97
|
Length = 223 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
VL G+ + EG+ VG+VG G+GKTTL+ A+ + P G++L+ G D+ ++ +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 1292 KLSIIPQEPTL-FRGSVRT 1309
+++ +PQ+ +L F VR
Sbjct: 78 RVASVPQDTSLSFEFDVRQ 96
|
Length = 402 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-09
Identities = 43/227 (18%), Positives = 95/227 (41%), Gaps = 59/227 (25%)
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------- 659
R ++ + + + G VG+G++ L+ + G + G + L G
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 660 IAYVSQ----TSWIQSGSIRDNI-------------LYG--------KPMDKARYDKAIK 694
+AY+++ + + SI N+ G + + R A+K
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 695 ACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754
+++++I LSGG +Q++ +++ + ++ +FD+P +D
Sbjct: 400 CHSVNQNITE---------------LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA 444
Query: 755 AATLFNECVMAAL--EKKTVILVTHQV-EFLSEVDRILVLEGGQITQ 798
A ++ VM L + K +++V+ ++ E ++ DRI V G++TQ
Sbjct: 445 KAEIYK--VMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-09
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG---TVNLYGSIAYVSQTSWIQSGS 673
+ ++ + +CG G GKSSL + ILGE+ + G T G + YV Q ++ G+
Sbjct: 472 SFEVPSGNNLLICGPNGCGKSSL-FRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGT 530
Query: 674 IRDNILYGKPMDKARY-DKAIKACALDKDINNF-DHGDLTEIGQRGLN----------LS 721
+RD I+Y P + + DKD+ D+ LT I +R LS
Sbjct: 531 LRDQIIY--PDSSEDMKRRGLS----DKDLEQILDNVQLTHILEREGGWSAVQDWMDVLS 584
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
GG+KQRI +AR Y+ + D+ SAV ++ C + T+ V+H+
Sbjct: 585 GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGI---TLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 49/198 (24%), Positives = 90/198 (45%), Gaps = 15/198 (7%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L ++L +K + G GAGK++ + ILG I SG + G + + + G
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIG 75
Query: 673 SIRDN-ILYGKPMDKARYDKAIKACAL---DKDINN-FDHGDLTEIGQRGL-NLSGGQKQ 726
++ + Y P AR + + A L K I+ D L + ++ + S G KQ
Sbjct: 76 ALIEAPGFY--PNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQ 133
Query: 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV- 785
R+ +A A+ + D+ + D+P + +D L + + TV++ +H LSE+
Sbjct: 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHL---LSEIQ 190
Query: 786 ---DRILVLEGGQITQSG 800
DRI ++ G++ + G
Sbjct: 191 KVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 31/186 (16%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
G++ + + + V G G GK++LL + G + SG V G Q
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNG------TALAEQ 67
Query: 671 SGSIRDNILYGKPMDKARYDKAIKA-----------CALDKDINNFDHGDLTEIGQRGLN 719
NILY + +K A+ L +G G
Sbjct: 68 RDEPHRNILY------LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFE 121
Query: 720 ------LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TV 772
LS GQ++R+ LAR + A +++ D+P +A+D L + A L + V
Sbjct: 122 DLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDK-AGVALLAGLLRAHLARGGIV 180
Query: 773 ILVTHQ 778
+L THQ
Sbjct: 181 LLTTHQ 186
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 4e-09
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
+EL+ ++ + + VLK + +G V ++G +G GK+TL+ + L EP G I
Sbjct: 3 ELELKNVRKSF--GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTNL 1311
LIDG D+ + + R ++++ Q L+ +V N+
Sbjct: 61 LIDGRDVTDLPPEK-R-GIAMVFQNYALYPHMTVYENI 96
|
Length = 338 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 4e-09
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 42/201 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSIAYVSQTSWIQS 671
L+GVNL IK + A+ G G+GKS+L I+G +++ G I + +
Sbjct: 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTE-----GEILFKGE------ 64
Query: 672 GSIRDNILYGKPMDKAR--------YDKAIKACALDKDINNFDHGDLTEIGQRGLN--LS 721
+I P ++AR Y I +F R +N S
Sbjct: 65 -----DITDLPPEERARLGIFLAFQYPPEIPGVKN----ADF---------LRYVNEGFS 106
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781
GG+K+R ++ + + + D+ + D+P S +D + E K+V+++TH
Sbjct: 107 GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRL 166
Query: 782 LSEV--DRILVLEGGQITQSG 800
L + DR+ VL G+I +SG
Sbjct: 167 LDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 5e-09
Identities = 54/213 (25%), Positives = 97/213 (45%), Gaps = 26/213 (12%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYA---ILGEIPKISGTVNLYG-------------S 659
+N+ I+ + A+ G+ G GKS+ L + +I KI G V + G +
Sbjct: 21 INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80
Query: 660 IAYVSQTSWIQSGSIRDNI-----LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714
+ V Q + SI +NI L+G +K + + C + + F+ ++
Sbjct: 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCL--QKVGLFEEVK-DKLK 137
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL 774
Q L LSGGQ+QR+ +ARA+ + L D+P SA+D ++ + E + ++I+
Sbjct: 138 QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEELLKELSHNLSMIM 196
Query: 775 VTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
VTH ++ V D G++ + G +E
Sbjct: 197 VTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229
|
Length = 246 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-09
Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 45/214 (21%)
Query: 626 IAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYGSI----------AYVSQTS-WIQS 671
+AV GS GAGK++L+ A+ PK SG+V L G AYV Q +I +
Sbjct: 54 LAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPT 113
Query: 672 GSIRDNILY----------GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL--N 719
++R+++++ K + R D+ ++A L K N T IG G
Sbjct: 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN-------TRIGVPGRVKG 166
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-----KTVIL 774
LSGG+++R+ A + D + D+P S +D+ A + V+ L+ KT+I
Sbjct: 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS-----VVQVLKGLAQKGKTIIC 221
Query: 775 VTHQ--VEFLSEVDRILVLEGGQITQSGNYQELL 806
HQ E D+I+++ G++ G+ + +
Sbjct: 222 TIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 5e-09
Identities = 74/354 (20%), Positives = 125/354 (35%), Gaps = 95/354 (26%)
Query: 495 EAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSA------PLNAST--IFTVLATLRSMG 546
E + + + S+++ LG L G AST T++ L +
Sbjct: 220 EYRHHIIRAN-TFHLLAVNWSNIMLLG--LIGLVFWLALSLGWASTNVAATIVLVLLFLR 276
Query: 547 EPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN-------DDVRRISLQKSDRSVKI-- 597
P+ L ++ +V+F++I L + D + + L R+V+
Sbjct: 277 TPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWKTLEL----RNVRFAY 332
Query: 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY 657
Q+ F P +NL IK + + + G G+GKS+L + G LY
Sbjct: 333 QDNAFHVGP---------INLTIKRGELVFLIGGNGSGKSTLAMLLTG----------LY 373
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGKPMD---KARYDKAIKAC------------------ 696
QSG I + GKP+ Y K A
Sbjct: 374 QP----------QSGEILLD---GKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKAS 420
Query: 697 --ALDKDINNFDHGDLTEIGQRG---LNLSGGQKQRIQLARAVYNDADIYLFD------D 745
++K + + T + L LS GQK+R+ L A+ + DI + D D
Sbjct: 421 PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQD 480
Query: 746 P-FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798
P F L E + KT+ ++H + DR+L + GQ+++
Sbjct: 481 PAFRREFYQVLLPLLKE------QGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 6e-09
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 31/183 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
G++ + + + V G G+GK++LL + G P ++G V L G Q
Sbjct: 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNG------GPLDFQRD 69
Query: 673 SIRDNILYGKPMDKARYDKAIKACALDKDIN-NF---DHGD------LTEIGQRGL---- 718
SI +LY + IK L N F DH D L +G G
Sbjct: 70 SIARGLLY------LGHAPGIKT-TLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRP 122
Query: 719 --NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILV 775
LS GQ++R+ LAR + + +++ D+P +A+D A F E + + V+L
Sbjct: 123 VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVA-RFAEAMAGHCARGGMVVLT 181
Query: 776 THQ 778
THQ
Sbjct: 182 THQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 7e-09
Identities = 55/213 (25%), Positives = 98/213 (46%), Gaps = 28/213 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG-SIAYVSQT-- 666
L+GVNL +K + A+ G G+GKS+L Y I+G PK G + G I +S
Sbjct: 20 LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG-HPKYEVTEGEILFDGEDILELSPDER 78
Query: 667 -------SW-----IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE-I 713
++ I + D + M+ R + I + + + L E
Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAA--MNARRGARGILPEFIKELKEKAELLGLDEEF 136
Query: 714 GQRGLN--LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKT 771
+R +N SGG+K+R ++ + + + + + D+P S +D A + E + A E+
Sbjct: 137 LERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI-DALKIVAEGINALREEGR 195
Query: 772 -VILVTHQVEFLSEV--DRILVLEGGQITQSGN 801
V+++TH L + D++ VL G+I +SG+
Sbjct: 196 GVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGD 228
|
Length = 251 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 9e-09
Identities = 72/327 (22%), Positives = 124/327 (37%), Gaps = 40/327 (12%)
Query: 1007 FDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRIN 1066
FD P+ +++ L IGI+ VLV A++ R ++ + A E I
Sbjct: 124 FDAPWMPIYLLVCFL-LHPWIGILALGGAVVLVG--LALLNNRATKKP-LKEATEA-SIR 178
Query: 1067 GTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFF---HTNGVMEWL-- 1121
A AE I A M+ + + + S G++ L
Sbjct: 179 ANNLADSALRNAEV------IEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSK 232
Query: 1122 ILRVEALQNLTLFTAALFLVLIPRGYVAPG-------LVGLSLSYAFTLTGTQVFLSRWY 1174
R+ LQ+L L A L G + PG LVG +L+ G W
Sbjct: 233 YFRI-VLQSLVLGLGA---YLAIDGEITPGMMIAGSILVGRALAPIDGAIGG------WK 282
Query: 1175 CYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLK 1234
+ + +R+ + + P + P +G + + + I L+
Sbjct: 283 QFSGA-RQAYKRLNELLANYPSRDPAMPLPEP------EGHLSVENVTIVPPGGKKPTLR 335
Query: 1235 GITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294
GI+ + G + ++G +GSGK+TL + + P GS+ +DG D+ + +
Sbjct: 336 GISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIG 395
Query: 1295 IIPQEPTLFRGSVRTNLDPLGLYSDDE 1321
+PQ+ LF G+V N+ G +D E
Sbjct: 396 YLPQDVELFPGTVAENIARFGENADPE 422
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 9e-09
Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 38/202 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI--LGE-IP-----------------KISG 652
++ VN DI A+ G G GKS+ L AI + + IP K +
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 653 TVNLYGSIAYVSQTSWIQSGSIRDNILYGKPM----DKARYD----KAIKACALDKDINN 704
V L I V Q SI DNI YG + DK + + K+++ AL ++++
Sbjct: 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD 174
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
+ + L LSGGQ+QR+ +AR + + +I L D+P SA+D A + E ++
Sbjct: 175 -------RLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKI--EDLI 225
Query: 765 AALEKK-TVILVTHQVEFLSEV 785
L T+++VTH ++ S V
Sbjct: 226 QELRGSYTIMIVTHNMQQASRV 247
|
Length = 286 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-08
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 1186 RIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIR---YRPNAPLVLKGITCTFSE 1242
RI+ + E P + + P GR EL + IR Y L+ + T
Sbjct: 289 RIRAMLA---EAPVVKDGSEPVPE----GRGEL-DVNIRQFTYPQTDHPALENVNFTLKP 340
Query: 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302
G +G+ G TGSGK+TL+S + R + + G I + + + L R +L+++ Q P L
Sbjct: 341 GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400
Query: 1303 FRGSVRTNL 1311
F +V N+
Sbjct: 401 FSDTVANNI 409
|
Length = 569 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+R + + ++L G+ G + ++G +GSGK+TL+ + L+ P G IL
Sbjct: 9 IEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 1276 IDGVDICSM---GLKDLRVKLSIIPQEPTLF 1303
IDG DI + L ++R ++ ++ Q+ LF
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALF 97
|
Length = 263 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 1e-08
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 4/144 (2%)
Query: 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPL-VLKG 1235
+ Y+ S+E I P +VE+ +I+ + ++ Y + + K
Sbjct: 345 ITEYMKSLEATNSLYEIINRKP-LVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKD 403
Query: 1236 ITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI-DGVDICSMGLKDLRVKLS 1294
+ T +EG VG +G GK+T++ + RL +P G I+I D ++ + LK R K+
Sbjct: 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIG 463
Query: 1295 IIPQEPTLFRGSVRTNLDPLGLYS 1318
++ Q+P LF S++ N+ LYS
Sbjct: 464 VVSQDPLLFSNSIKNNIK-YSLYS 486
|
Length = 1466 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-08
Identities = 56/246 (22%), Positives = 103/246 (41%), Gaps = 58/246 (23%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYG-----SIAYVSQ 665
L+ ++ I+ + + + G GAGKS L++ + G + SG + +Y YV +
Sbjct: 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI-IYHVALCEKCGYVER 74
Query: 666 TS--------------------WIQSGSIRDNI-------------LYG---------KP 683
S W S +R I LYG +
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134
Query: 684 MDKARY--DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741
+++ Y +A+ ++ H +T I + +LSGG+KQR+ LAR + + ++
Sbjct: 135 LEEIGYEGKEAVGRAVDLIEMVQLSH-RITHIAR---DLSGGEKQRVVLARQLAKEPFLF 190
Query: 742 LFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQS 799
L D+P +D TA + N A +++L +H E + ++ D+ + LE G+I +
Sbjct: 191 LADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEE 250
Query: 800 GNYQEL 805
G E+
Sbjct: 251 GTPDEV 256
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 40/215 (18%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGS-----------IAYV 663
+NL IK + + G G GK+++L + G E P G + + G I V
Sbjct: 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT-EGQIFIDGEDVTHRSIQQRDICMV 83
Query: 664 SQT-SWIQSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQ 715
Q+ + S+ +N+ YG M K R +A++ DL
Sbjct: 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV------------DLAGFED 131
Query: 716 RGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---T 771
R ++ +SGGQ+QR+ LARA+ + LFD+P S +DA+ ++ + + L+++ T
Sbjct: 132 RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK--IRELQQQFNIT 189
Query: 772 VILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+ VTH Q E + D ++V+ G+I Q G+ QEL
Sbjct: 190 SLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+ L + Y VL+ I+ + +G ++G G+GK+TL+ A+ L++P+ G I
Sbjct: 5 IEVENLTVSY--GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 1276 IDGVDICSMGLKDLRV 1291
I G + K LR+
Sbjct: 63 IFGKPV-RKRRKRLRI 77
|
Length = 254 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+R + + + I+ +G V ++G +G GKTTL+ + +P+ G IL
Sbjct: 6 LEIRNVSKSFGDFT--AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63
Query: 1276 IDGVDICSMGLKDL---RVKLSIIPQEPTLF 1303
+DG DI D+ + + ++ Q LF
Sbjct: 64 LDGEDI-----TDVPPEKRPIGMVFQSYALF 89
|
Length = 352 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-08
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290
+ + EG ++G +GSGK+TL+ L RL+EP G IL+DG DI + +LR
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELR 101
|
Length = 386 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 60/246 (24%), Positives = 109/246 (44%), Gaps = 51/246 (20%)
Query: 594 SVKIQEGNFSWDPELAIPT--LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
S+KI+ + L VN++I+ + + + G G+GKS+L+ + G + S
Sbjct: 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61
Query: 652 GTVNLYG---------------SIAYVSQTSWIQ--SGSIRDNILYGKPMD--------K 686
G + + G + V Q Q +I +I +G P++ +
Sbjct: 62 GKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFG-PINLGLSEEEIE 120
Query: 687 ARYDKAIKACALD----KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742
R +A+ LD KD + F+ LSGGQK+R+ +A V + I +
Sbjct: 121 NRVKRAMNIVGLDYEDYKDKSPFE-------------LSGGQKRRVAIAGVVAMEPKILI 167
Query: 743 FDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTHQVEFLSE-VDRILVLEGGQITQ 798
D+P + +D + N+ + L K+ T+ILV+H +E +++ DRI+V+ G+
Sbjct: 168 LDEPTAGLDPKGRDEILNK--IKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL 225
Query: 799 SGNYQE 804
G +E
Sbjct: 226 QGTPRE 231
|
Length = 287 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 20/179 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------I 660
++ + + + + G GAGK++LL + G + +G V G +
Sbjct: 18 FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQAL 77
Query: 661 AYVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
Y+ I++ + +N+ + + + I AL + L ++
Sbjct: 78 LYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWE-ALAQ----VGLAGLEDLPVG--Q 130
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LS GQ++R+ LAR + A +++ D+PF+A+D A L A + V+L THQ
Sbjct: 131 LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQ 189
|
Length = 209 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779
LSGGQK+R+ +A + +I +FD+P + +D + + A KTV ++TH +
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM 236
Query: 780 EFLSEV-DRILVLEGGQITQSGNYQEL 805
E + EV D ++V++ G+I ++G E+
Sbjct: 237 EHVLEVADEVIVMDKGKILKTGTPYEI 263
|
Length = 320 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 26/195 (13%)
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAYVSQTSWIQ-SGSIRD 676
G GAGKS++ +LG I G + + G I V Q + ++R+
Sbjct: 37 GPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRE 96
Query: 677 NIL-YGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733
N+L +G+ M + I + + + + LSGG K+R+ LARA
Sbjct: 97 NLLVFGRYFGMSTREIEAVIPSLL---EFARLESKADVRVAL----LSGGMKRRLTLARA 149
Query: 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQVEFLSEV-DRILVL 791
+ ND + + D+P + +D H A L E + + L + KT++L TH +E + DR+ VL
Sbjct: 150 LINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVL 208
Query: 792 EGGQITQSGNYQELL 806
E G+ G L+
Sbjct: 209 ESGRKIAEGRPHALI 223
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 47/221 (21%), Positives = 98/221 (44%), Gaps = 45/221 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660
+RGV+ ++ + + G GAGK++ + + + SG + G I
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI 75
Query: 661 AYVSQTSWIQSG-SIRDNI-----LYGKPMDKA--RYDKAIKACAL----DKDINNFDHG 708
V Q + + +N+ LYG P + R D+ + L D+ + +
Sbjct: 76 GIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTY--- 132
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
SGG ++R+++AR++ + ++ D+P +D T A ++ + L+
Sbjct: 133 ------------SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE--YIEKLK 178
Query: 769 KK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
++ T++L TH +E ++ DR+ +++ G+I G +EL
Sbjct: 179 EEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 12/118 (10%)
Query: 1216 IELRQLKIRYRPNAPLVLKG---ITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I+ + Y P P+ KG I+ EG+ V +VG TGSGK+TL+ L++P+ G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 1273 SILIDGVDIC----SMGLKDLRVKLSIIPQ--EPTLFRGSVRTNLD--PLGL-YSDDE 1321
+I I G I + LK LR K+S++ Q E LF +V +++ P +S+DE
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDE 120
|
Length = 287 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-08
Identities = 64/231 (27%), Positives = 111/231 (48%), Gaps = 36/231 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISG-TVNLYGSIAYVS 664
LRGV+ I +K+ + G G+GKS+LL + GEI +++G + YG
Sbjct: 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEI-RVNGREIGAYGLRELRR 1384
Query: 665 QTSWIQS------GSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
Q S I G++R N+ L A A++ L + + + G + + +
Sbjct: 1385 QFSMIPQDPVLFDGTVRQNVDPFLEASS---AEVWAALELVGLRERVASESEGIDSRVLE 1441
Query: 716 RGLNLSGGQKQRIQLARAVYN-DADIYLFD------DPFSAVDAHTAATLFNECVMAALE 768
G N S GQ+Q + +ARA+ + L D DP A+D AT VM+A
Sbjct: 1442 GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDP--ALDRQIQAT-----VMSAFS 1494
Query: 769 KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA-FEQLVNA 818
TVI + H++ +++ D+I+V++ G + + G+ +EL++ + F +V A
Sbjct: 1495 AYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEA 1545
|
Length = 1560 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (135), Expect = 3e-08
Identities = 58/240 (24%), Positives = 107/240 (44%), Gaps = 38/240 (15%)
Query: 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
++ ++++ F ++ E + L GV+ I + +++ G G+GKS+ I G +
Sbjct: 2 NKILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE 61
Query: 652 GTV-------------NLYGSIAYVSQTSWIQ--SGSIRDNILYGK-----PMDK--ARY 689
G V NL I V Q Q ++ D++ +G P ++ R
Sbjct: 62 GKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRV 121
Query: 690 DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
D+A+ A +N D + LSGGQKQR+ +A + +I + D+ S
Sbjct: 122 DEALLA------VNMLDFKT-----REPARLSGGQKQRVAVAGIIALRPEIIILDESTSM 170
Query: 750 VDAHTAATLFNECVMAALEKK---TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+D + V+ +++K TV+ +TH ++ + DRILV++ G+I + EL
Sbjct: 171 LDPTGRQEIMR--VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 4e-08
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
E+ L + Y VL+ ++ G + +VG G+GK+TL+ A+ L++P GSI +
Sbjct: 1 EVEDLTVSY--GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 1277 DGVDI 1281
G +
Sbjct: 59 FGKPL 63
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-08
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I L L + Y +L+ ++ T + G R+G+VGR G+GK+TL+ L +EP G +
Sbjct: 4 ITLENLSLAYG--DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
+++ + QEP L
Sbjct: 62 RPKG-----------LRVGYLSQEPPLD 78
|
Length = 530 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (134), Expect = 5e-08
Identities = 51/235 (21%), Positives = 100/235 (42%), Gaps = 25/235 (10%)
Query: 595 VKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652
+K ++ N+++ P A L ++L++K A+ G G+GKS+LL + G + G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 653 TVNLYGSIAYVSQTSWIQSGSIRDN--ILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
V + G I S + + +R +++ P + + +K A
Sbjct: 62 KVTV-GDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKA 120
Query: 711 TEIGQRGL---------------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755
+I L LSGGQ +R+ +A + + ++ + D+P + +D
Sbjct: 121 EKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR 180
Query: 756 ATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN----YQEL 805
+ +TV+LVTH ++ +++ D + +LE G I G +QE+
Sbjct: 181 IEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEV 235
|
Length = 288 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 25/217 (11%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYGSIAYVSQTSW 668
I L V+L + Q V G+ GAGKS+L+ + L E P SG+V + G ++ S
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-SGSVIVDG--QDLTTLSN 74
Query: 669 IQSGSIRDNI-----LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI-GQRGL---- 718
+ R I + + + LD + +TE+ GL
Sbjct: 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKH 134
Query: 719 -----NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK--- 770
NLSGGQKQR+ +ARA+ ++ + L D+ SA+D T ++ ++ + ++
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILE--LLKEINRRLGL 192
Query: 771 TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T++L+TH+++ + + D + V+ G++ + G E+
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 5e-08
Identities = 63/258 (24%), Positives = 109/258 (42%), Gaps = 49/258 (18%)
Query: 584 RRISLQKSDRSV--KIQEGN-FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL 640
+++ L+ +D V I++G + W P + + GV L + + + V G G GKS+
Sbjct: 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFA 64
Query: 641 YAILGEIPKISGTVNLYG-SIAYVSQTSW------IQ--------SGSIRDNI------- 678
AI+G + G V G + + W IQ S + R I
Sbjct: 65 RAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEP 124
Query: 679 --LYGKPMDKARYDKAIKACA-----LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731
Y + + +KA L IN + H SGGQ QRI +A
Sbjct: 125 LRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPH-----------EFSGGQCQRIGIA 173
Query: 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTHQVEFLSEV-DR 787
RA+ + + + D+P SA+D A + N ++ L+++ ++I + H + + + DR
Sbjct: 174 RALILEPKLIICDEPVSALDVSIQAQVVN--LLQQLQREMGLSLIFIAHDLAVVKHISDR 231
Query: 788 ILVLEGGQITQSGNYQEL 805
+LV+ G + G Y E+
Sbjct: 232 VLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 6e-08
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 1248 VVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290
++G +GSGK+TL+ + RL+EP G +LIDG DI +M K+LR
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 6e-08
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I + Y P L+ ++ +G V + G +G+GK+TL+ ++ P G IL
Sbjct: 2 IRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 1276 IDGVDICSMGLKD---LRVKLSIIPQE 1299
++G D+ + ++ LR ++ ++ Q+
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQD 87
|
Length = 223 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 7e-08
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK-DLR 1290
L ++ + G G++G G+GKTTL + + + P GS+L DG DI GL
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT--GLPPHEI 72
Query: 1291 VKLSIIP--QEPTLFRG-SVRTNL 1311
+L I Q P LF +V N+
Sbjct: 73 ARLGIGRTFQIPRLFPELTVLENV 96
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 7e-08
Identities = 46/218 (21%), Positives = 93/218 (42%), Gaps = 34/218 (15%)
Query: 605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVS 664
D + + + GV+ +K + + G GAGK++ L + G + +G + G V
Sbjct: 13 DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDG-FDVVK 71
Query: 665 QTSWIQSG--------------SIRDNI-----LYGKPMDKARYDKAIKACALDKDINNF 705
+ + + + R+N+ LYG D + A L++ +
Sbjct: 72 EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGD------ELTA-RLEELADRL 124
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
+L + +R S G +Q++ +ARA+ +D + L D+P + +D L +
Sbjct: 125 GMEELLD--RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE--FIR 180
Query: 766 AL--EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSG 800
L K ++ TH ++ + + DR++VL G++ G
Sbjct: 181 QLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 8e-08
Identities = 53/242 (21%), Positives = 106/242 (43%), Gaps = 41/242 (16%)
Query: 594 SVKIQEGNFSWDPELAIPT--LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
S+K + ++ + P + L ++ +++ +A+ G G+GKS+L+ + S
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 652 GTVNLYG-----------------SIAYVSQTSWIQ--SGSIRDNILYGKPM------DK 686
GT+ + G ++ V Q Q ++ ++ +G P D+
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG-PKNFGFSEDE 120
Query: 687 ARYD--KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
A+ K +K L +D+ I + LSGGQ +R+ +A + + +I D
Sbjct: 121 AKEKALKWLKKVGLSEDL----------ISKSPFELSGGQMRRVAIAGVMAYEPEILCLD 170
Query: 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803
+P + +D + TVILVTH ++ ++E D +LVLE G++ + + +
Sbjct: 171 EPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230
Query: 804 EL 805
E+
Sbjct: 231 EI 232
|
Length = 287 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 8e-08
Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 35/198 (17%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAI--LGE-IP--KISGTV-----NLYGS------ 659
VNL+I+ A G G GKS++L + + E IP ++ G V +LYG
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 660 ----IAYVSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALD--KDINNFDHGDLTE 712
I V Q + + SIRDN++ G ++ R K + + N ++ E
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN-----E 137
Query: 713 IGQR----GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
+ R G LSGGQ+QR+ +ARA+ + D+ L D+P SA+D +TL E ++ L+
Sbjct: 138 VKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP--ISTLAIEDLINELK 195
Query: 769 KK-TVILVTHQVEFLSEV 785
+ T+++VTH ++ + V
Sbjct: 196 QDYTIVIVTHNMQQAARV 213
|
Length = 258 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 8e-08
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 11/82 (13%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-----KTVIL 774
LSGG++QR+ +ARA+ N + L D+P +D + E ++ L++ TVI+
Sbjct: 138 LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS-----ERILDLLKRLNKRGTTVIV 192
Query: 775 VTHQVEFLSEVD-RILVLEGGQ 795
TH + + V R+++L+ G+
Sbjct: 193 ATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 8e-08
Identities = 55/243 (22%), Positives = 89/243 (36%), Gaps = 50/243 (20%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658
P L V+L I+ + + + G G GKS+L +LG GTV+ G
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84
Query: 659 ----SIAYVSQTS-----------WIQSGSIRDNILYGKPMDKARYDKAIKACALDKDIN 703
+ V Q S I +R + KAR + + L +
Sbjct: 85 AFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED- 143
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ LSGGQ QRI +ARA+ + + D+ S +D A +
Sbjct: 144 ---------ADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAV-----I 189
Query: 764 MAALEK------KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL-LAGTAFEQL 815
+ L K + +TH + + R+ V++ GQI + + +LL A L
Sbjct: 190 LELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPAGRNL 249
Query: 816 VNA 818
+A
Sbjct: 250 QSA 252
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 1216 IELRQLKIRY-------RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268
+E++ LK + + + G++ + EG +G+VG +G GK+TL + L E
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 1269 PAGGSILIDGVDICSMGLKDLRVKL 1293
P G IL +G DI + K+ R +
Sbjct: 65 PTSGEILFEGKDITKL-SKEERRER 88
|
Length = 268 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 1e-07
Identities = 47/226 (20%), Positives = 90/226 (39%), Gaps = 34/226 (15%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS- 659
+ S + ++ V+ +++ + + + G G G+S L+ AI G SG + L G
Sbjct: 262 DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKD 321
Query: 660 -IAYVSQTSWIQSG-----------------SIRDNILYGKPMDKARYDK------AIKA 695
+ +S + G S+ +N++ G+ K AI+
Sbjct: 322 VLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRK 381
Query: 696 CALDKDINNFD---HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
A + I FD +LSGG +Q++ LAR + D+ + P +D
Sbjct: 382 FAREL-IEEFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDV 436
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQIT 797
+ + K V+L++ ++ + E+ DRI V+ G+I
Sbjct: 437 GAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
+L G++ G + ++G G+GK+TL+ AL + P G + ++GV + S ++L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 1292 KLSIIPQEPTL 1302
+++PQ +L
Sbjct: 76 HRAVLPQNSSL 86
|
Length = 259 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 47/226 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L+ VNL + + A+ G GAGKS+L+ + G GT+ +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 659 --SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
I Y + S I ++ +N+ G+ + K K C +N D ++
Sbjct: 81 GIGIIY-QELSVIDELTVLENLYIGRHLTK-------KVCG----VNIIDWREMRVRAAM 128
Query: 717 GL--------------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
L NLS KQ +++A+ + DA + + D+P S++ LF
Sbjct: 129 MLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF--L 186
Query: 763 VMAALEK--KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
+M L K ++ ++H++ + + DR V++ G SG ++
Sbjct: 187 IMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
Length = 510 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
I L R+R V + G++ T G G++G G+GKTT + L L+EP G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTNL 1311
+DG D+ + R +L + L+ R + R NL
Sbjct: 62 ATVDGFDVVKEPA-EARRRLGFVSDSTGLYDRLTARENL 99
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 57/223 (25%), Positives = 99/223 (44%), Gaps = 44/223 (19%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------- 659
+ L+G++ + + A+ G GAGKS+L+ I G +P SGT+ + G+
Sbjct: 23 GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAK 82
Query: 660 -----IAYVSQTSWI-QSGSIRDNILYGKPMDKARYDK-----AIKACALDKDINNFDHG 708
I V Q + + S+++NIL+G P +A K A C LD D +
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSS----A 138
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
E+ R Q +++ R + D+ I + D+P +++ LF+ + L
Sbjct: 139 GSLEVADR---------QIVEILRGLMRDSRILILDEPTASLTPAETERLFSR--IRELL 187
Query: 769 KKTV--ILVTHQVEFLSEV----DRILVLEGGQITQSGNYQEL 805
+ V + ++H+ L E+ DRI V+ G I SG +L
Sbjct: 188 AQGVGIVFISHK---LPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 56/238 (23%), Positives = 106/238 (44%), Gaps = 33/238 (13%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPK 649
VK+++ N + A+ + V++D A+ G G GKS++L +I L +
Sbjct: 5 VKLEQLNVHFGKNHAV---KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 650 ISGTVNLYGSIAYVSQTSWIQSGSIRDNI--LYGKPMD---KARYDKAIKACALDKDINN 704
++G + L + Y + SIR + ++ KP + YD I L+ +N
Sbjct: 62 VTGKILLDDTDIYDRGVDPV---SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNR 118
Query: 705 FDHGDLTEIGQR---------------GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
+ ++ E + + LSGGQ+QR+ +AR + ++ L D+P SA
Sbjct: 119 SEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASA 178
Query: 750 VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+D + + E + EK T+I+VTH ++ + V D G + + G +++
Sbjct: 179 LDPISTLKI-EELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF 235
|
Length = 252 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMAALEKKTVIL 774
++LSGG+ QR+ +A A+ +A YLFD+P + +D AA KKT ++
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEG--KKTALV 127
Query: 775 VTHQVEFLSEV-DRILVLEG 793
V H + L + DRI V EG
Sbjct: 128 VEHDLAVLDYLSDRIHVFEG 147
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 64/256 (25%), Positives = 103/256 (40%), Gaps = 65/256 (25%)
Query: 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLY 641
D+R +S + +R + F ++L + + A+ G G GK++LL
Sbjct: 9 DMRGVSFTRGNRCI------FD-----------NISLTVPRGKITAIMGPSGIGKTTLLR 51
Query: 642 AILGEIPKISGTVNLYG-SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700
I G+I G + G +I +S++ LY + R ++ AL
Sbjct: 52 LIGGQIAPDHGEILFDGENIPAMSRSR-----------LYTV---RKRMSMLFQSGALFT 97
Query: 701 DINNFD--------HGDLTE-------------IGQRGL------NLSGGQKQRIQLARA 733
D+N FD H L +G RG LSGG +R LARA
Sbjct: 98 DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARA 157
Query: 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTHQV-EFLSEVDRIL 789
+ + D+ +FD+PF D T L +++ L T ++V+H V E LS D
Sbjct: 158 IALEPDLIMFDEPFVGQDPITMGVLVK--LISELNSALGVTCVVVSHDVPEVLSIADHAY 215
Query: 790 VLEGGQITQSGNYQEL 805
++ +I G+ Q L
Sbjct: 216 IVADKKIVAHGSAQAL 231
|
Length = 269 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 36/215 (16%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYV------ 663
+ L+G++ I+ + + G GAGK++ L + G + SG V + G + +
Sbjct: 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFL 93
Query: 664 ----------SQTSW----IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGD 709
+Q W I S + I Y + AR+ K + + D+ +
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAI-YD--LPPARFKKRLDELSELLDL-----EE 145
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
L + R LS GQ+ R ++A A+ ++ +I D+P +D + N E+
Sbjct: 146 LLDTPVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRER 203
Query: 770 KTVILVT----HQVEFLSEVDRILVLEGGQITQSG 800
T +L+T +E L+ R+LV++ G++ G
Sbjct: 204 GTTVLLTSHYMKDIEALA--RRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-07
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 1186 RIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTR 1245
R+ + + P + P +G + + +L +LKGI+ G
Sbjct: 311 RLNELLAELPAAAERMPLPAP------QGALSVERLTAAPPGQKKPILKGISFALQAGEA 364
Query: 1246 VGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG 1305
+G++G +GSGK+TL L + P GS+ +DG D+ + L + +PQ+ LF G
Sbjct: 365 LGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG 424
Query: 1306 SVRTNLDPLGLYSDDE 1321
++ N+ G +D E
Sbjct: 425 TIAENIARFGEEADPE 440
|
Length = 580 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 2e-07
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP--- 1269
IE+R L + Y LK I + ++G +G GK+TL+ L R+ +
Sbjct: 5 IPAIEVRDLNLYY--GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPG 62
Query: 1270 --AGGSILIDGVDICSMGLK--DLRVKLSIIPQEPTLFRGSVRTNL 1311
G +L+DG +I + +LR ++ ++ Q+P F S+ N+
Sbjct: 63 ARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNV 108
|
Length = 253 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 75/343 (21%), Positives = 126/343 (36%), Gaps = 33/343 (9%)
Query: 974 FTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL-----LAIIG 1028
F I P+ + R+L L+SD+ + F V A L LA +
Sbjct: 87 FIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLS 146
Query: 1029 IMTFVTWQVLVVAIFAMVAVRFVQRY-YIATARELIRINGTTKAPVMNYTAETSQGV--V 1085
F+ V +V V + Y ++A ARE T+ + N +G +
Sbjct: 147 PKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARE-------TEDKLQNDYQTILEGRKEL 199
Query: 1086 TIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA--ALFLVLI 1143
T+ +R + L DA + H L N+ L +F + +
Sbjct: 200 TLNR----ERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLAL 255
Query: 1144 PRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYI---ISVERIKQFMHIPPEPPAI 1200
G+ + ++ + L + L L + ++ +I + P A
Sbjct: 256 SLGWAS---TNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPY--KAD 310
Query: 1201 VEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLI 1260
+ W +ELR ++ Y+ NA + I T G V ++G GSGK+TL
Sbjct: 311 FPRPQAFPDWK---TLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLA 366
Query: 1261 SALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
L L +P G IL+DG + + L+D R S + + LF
Sbjct: 367 MLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLF 409
|
Length = 546 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVT 776
LSGGQKQR+ +A + + +FD+P + +D + N + L KK T+IL+T
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVN--TIKELNKKYGITIILIT 202
Query: 777 HQVEFLSEVDRILVLEGGQITQSGNYQEL 805
H +E E DRI+V++ G++ G +E+
Sbjct: 203 HYMEEAVEADRIIVMDSGKVVMEGTPKEI 231
|
Length = 280 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-07
Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 56/222 (25%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
P + +NL ++ +++A+ G G GK++LL ++GE+ SGTV W +
Sbjct: 333 PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK------------WSE 380
Query: 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFD---------HGDLT---------- 711
+ NI Y D A YD + D+ FD +
Sbjct: 381 NA----NIGY-YAQDHA-YD-------FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLF 427
Query: 712 ---EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
+I + LSGG+K R+ + + ++ + D+P + +D + +L ALE
Sbjct: 428 SQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM-----ALE 482
Query: 769 K--KTVILVTHQVEFLSEV-DRILVLEGGQITQ-SGNYQELL 806
K T+I V+H EF+S + RI+ + + SG Y+E L
Sbjct: 483 KYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYL 524
|
Length = 530 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-07
Identities = 58/245 (23%), Positives = 98/245 (40%), Gaps = 39/245 (15%)
Query: 569 INAFLLDHELNNDDVR----RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLD----- 619
IN +L L ++VR I ++ P+L T L+
Sbjct: 306 INEYL-KGYLPEENVRFRPEEIEFEEKPPRDDKARDTLVEYPDLKK-TYGDFKLEVEEGE 363
Query: 620 IKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV-NLYGSIAYVSQT-SWIQSGSIRDN 677
I + I + G G GK++ + + G I G+ +L ++Y Q S G++ D
Sbjct: 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDL--KVSYKPQYISPDYDGTVEDL 421
Query: 678 ILYGKPMDKARYDKAIKACALDKDINN-----FDHGDLTEIGQRGLNLSGGQKQRIQLAR 732
+ AI++ + DL E + LSGG+ QR+ +A
Sbjct: 422 LR-----------SAIRSAFGSSYFKTEIVKPLNLEDLLE--RPVDELSGGELQRVAIAA 468
Query: 733 AVYNDADIYLFDDPFSA---VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRI 788
A+ +AD+YL D+P SA V+ + +KT ++V H + + V DR+
Sbjct: 469 ALSREADLYLLDEP-SAYLDVEQRIIVAKVIRRFIEN-NEKTALVVDHDIYMIDYVSDRL 526
Query: 789 LVLEG 793
+V EG
Sbjct: 527 IVFEG 531
|
Length = 591 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 35/195 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
L+ V++ I A+ G G GKS+ + + L + +I G V++ G Y
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 668 WIQ---------------SGSIRDNILYGKPMDKAR-------YDKAIKACALDKDINNF 705
++ SI DN+ YG + A + A+++ AL + ++
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSD- 146
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
+ L+LSGGQ+QR+ +AR + I LFD+P SA+D + A + + +M
Sbjct: 147 ------RLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARI-EDLIMN 199
Query: 766 ALEKKTVILVTHQVE 780
+ T+++VTH ++
Sbjct: 200 LKKDYTIVIVTHNMQ 214
|
Length = 258 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 3e-07
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 1229 APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD 1288
LK I +G V +VG GSGK++L+SAL +E GS+ + G
Sbjct: 17 TSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---------- 66
Query: 1289 LRVKLSIIPQEPTLFRGSVRTN 1310
++ + QEP + G++R N
Sbjct: 67 ---SIAYVSQEPWIQNGTIREN 85
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 3e-07
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ELR + R+ L G++ + G ++G G+GK+TL+ L L +P G IL
Sbjct: 1 LELRGITKRFGGVK--ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 1276 IDGVDICSMGLKD-LRVKLSIIPQ 1298
+DG ++ +D R ++++ Q
Sbjct: 59 VDGKEVSFASPRDARRAGIAMVYQ 82
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 1238 CTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIP 1297
TF++G +VG +GSGK+TL++ + P G +LI+GVD+ + D V S++
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPV--SMLF 76
Query: 1298 QEPTLFRG-SVRTNLDPLGL 1316
QE LF +V N+ LGL
Sbjct: 77 QENNLFAHLTVEQNVG-LGL 95
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 44/196 (22%), Positives = 80/196 (40%), Gaps = 43/196 (21%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
L+G+N + + +A+ G+ GAGKS+LL + G + SG V + G
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 660 --IAYVSQTSWIQ--SGSIRDNILYGKPMD--------KARYDKAIKACALDKDINNFDH 707
+ V Q Q + + ++ +G P++ + R +A+ A +
Sbjct: 68 QRVGLVFQDPDDQLFAADVDQDVAFG-PLNLGLSEAEVERRVREALTAV----GASGLRE 122
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD---AHTAATLFNECVM 764
+ LSGG+K+R+ +A AV D+ L D+P + +D +
Sbjct: 123 -------RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175
Query: 765 AALEKKTVILVTHQVE 780
TV++ TH V+
Sbjct: 176 EG---MTVVISTHDVD 188
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LSGGQK+R+ LA + + D +FD+P + +D + + KT+ILVTH
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224
Query: 779 VE-FLSEVDRILVLEGGQITQSGNYQELL 806
++ L R + + G+I + G+ ++L
Sbjct: 225 LDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 57/239 (23%), Positives = 97/239 (40%), Gaps = 38/239 (15%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA 661
F + + TL V+ +K + +++ G G+GKS+ + I G + SG + + G
Sbjct: 12 FKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD-L 70
Query: 662 YVSQTSWIQSGSIRDNI--LYGKPMDKARYDKAIKACALDKDI------NNFDHGDLTEI 713
+ W IR I ++ P D ++ D+ H ++ E
Sbjct: 71 LTEENVW----DIRHKIGMVFQNP------DNQFVGATVEDDVAFGLENKGIPHEEMKER 120
Query: 714 GQRGLN--------------LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
L LSGGQKQR+ +A AV I + D+ S +D L
Sbjct: 121 VNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180
Query: 760 NECVMAALEKK---TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+ + TVI +TH ++ ++ DR+LV++ GQ+ + +EL G QL
Sbjct: 181 K--TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGNDLLQL 237
|
Length = 279 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQ 778
LSGG K+R+ LARA+ ND D+ + D+P + +D A L E + + L + KT++L TH
Sbjct: 139 LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARGKTILLTTH- 196
Query: 779 VEFLSEV----DRILVLEGGQITQSGNYQELL 806
F+ E DR+ V+E G+ G L+
Sbjct: 197 --FMEEAERLCDRLCVIEEGRKIAEGAPHALI 226
|
Length = 306 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 3e-07
Identities = 39/181 (21%), Positives = 60/181 (33%), Gaps = 50/181 (27%)
Query: 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKP 683
+ I + G G+GK++L A+ E+ G V
Sbjct: 3 EVILIVGPPGSGKTTLARALARELGPPGGGV----------------------------- 33
Query: 684 MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743
I D D L +G + + SG + R+ LA A D+ +
Sbjct: 34 ---------IYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLIL 84
Query: 744 DDPFSAVDAHTAATLFNECVMAAL------EKKTVILVTHQVEFLSE------VDRILVL 791
D+ S +DA A L + L + TVIL T+ + L DR +VL
Sbjct: 85 DEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVL 144
Query: 792 E 792
Sbjct: 145 L 145
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 41/221 (18%)
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYG-----------S 659
+NL +K + +A+ G G+GKS AILG +P + SG + L G
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 660 IAYVSQ---TSWIQSGSIRDNIL-----YGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
IA + Q T++ ++ ++ + GK +AR I + L
Sbjct: 64 IATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQAR--ALILEA--------LEAVGLP 113
Query: 712 EIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MA 765
+ + L LSGG QR+ +A A+ + + D+P + +D A + +
Sbjct: 114 D-PEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR 172
Query: 766 ALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
L ++L+TH + ++ + D + V++ G+I + G +E+
Sbjct: 173 QLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 51/225 (22%)
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV----------NLY----GS 659
R V+ D+ + + + G G+GKS+LL + G + GT LY
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 660 IAYVSQTSWIQSGSIRDNILYG-------------KPMD-KARYDKAIKACALD----KD 701
+ +T W G + N G + M AR+ I+A A D +
Sbjct: 80 RRRLMRTEW---GFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVE 136
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
I D T I SGG +QR+Q+AR + + D+P +D A L +
Sbjct: 137 I------DPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD- 189
Query: 762 CVMAALEKK---TVILVTHQ---VEFLSEVDRILVLEGGQITQSG 800
++ L + VI+VTH L+ R+LV++ G++ +SG
Sbjct: 190 -LLRGLVRDLGLAVIIVTHDLGVARLLA--QRLLVMQQGRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 52/212 (24%), Positives = 82/212 (38%), Gaps = 41/212 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYGS---------- 659
L VN I + + + G G GKS+LL ++G + +G + L
Sbjct: 18 LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77
Query: 660 -IAYVSQTSWI-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
I + Q + + S+ N+L+ P +K A N L G G
Sbjct: 78 QIGILFQDALLFPHLSVGQNLLFALPAT-------LKGNARRNAAN----AALERSGLDG 126
Query: 718 L------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----HTAATLFNECVMAAL 767
LSGGQ+ R+ L RA+ L D+PFS +D +F+E A +
Sbjct: 127 AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGI 186
Query: 768 EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799
+ VTH ++ + R V+E Q Q+
Sbjct: 187 ---PTVQVTHDLQDVPAGSR--VIEMAQWEQN 213
|
Length = 213 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 21/83 (25%), Positives = 45/83 (54%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
LR ++ + L++ G+ T G+ G++G GSGK+TL+ L + P G++ +
Sbjct: 1 GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60
Query: 1277 DGVDICSMGLKDLRVKLSIIPQE 1299
GVD+ + + +++++ Q+
Sbjct: 61 AGVDLHGLSRRARARRVALVEQD 83
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-07
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 51/229 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L V+ + + + + G GAGKS+ + I G +P SG+V + G +
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN------PK 71
Query: 673 SIRDNI------------------------LYGKP--MDKARYDKAIKACALDKDINNFD 706
++ NI +YG + K R ++ I+ L + +
Sbjct: 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-- 129
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+IGQ LS G +QR+ LA+A+ +D + + D+P + +D + + N V+
Sbjct: 130 -----KIGQ----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRN--VIKN 178
Query: 767 LEK-KTVILVTH---QVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811
+ K KT+IL TH +VE + DR++++ G+I EL A
Sbjct: 179 IGKDKTIILSTHIMQEVEAI--CDRVIIINKGKIVADKKLDELSAANKK 225
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+++ +L Y + LKGI +G ++G G+GK+TL L +++P+ G IL
Sbjct: 6 LKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 1276 IDG--VDICSMGLKDLRVKLSIIPQEP--TLFRGSV 1307
DG +D GL LR + ++ Q+P LF SV
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASV 100
|
Length = 283 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 4e-07
Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 28/206 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSIAYVSQTSWI-- 669
L+GV ++ + + G GAGKS+LL I G E P +G + G + +
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS-AGKIWFSGHDITRLKNREVPF 76
Query: 670 ---QSGSI-RDNILYGKPMDKARYDKA----IKACALDKDINNFDHGDLTEIG------Q 715
Q G I +D+ L MD+ YD I A A DI L ++G
Sbjct: 77 LRRQIGMIFQDHHLL---MDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN 133
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD---AHTAATLFNECVMAALEKKTV 772
+ LSGG++QR+ +ARAV N + L D+P +D + LF E + TV
Sbjct: 134 FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGV---TV 190
Query: 773 ILVTHQVEFLSEVD-RILVLEGGQIT 797
++ TH + +S R+L L G +
Sbjct: 191 LMATHDIGLISRRSYRMLTLSDGHLH 216
|
Length = 222 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
T G V ++G +G+GK+TL++ + PA G ILI+GVD +S++
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDH--TASPPAERPVSML 76
Query: 1297 PQEPTLFRG-SVRTNLDPLGL 1316
QE LF +V N+ LGL
Sbjct: 77 FQENNLFAHLTVAQNIG-LGL 96
|
Length = 231 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 5e-07
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I L + Y P+ L+ I +G +G++G+ GSGK+TL L L+ P G +L
Sbjct: 2 IRLENVSYSY-PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 1276 IDGVDICSMG-LKDLRVKLSIIPQEP-TLFRG 1305
+ G+D L+ +R + I+ Q P T F G
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92
|
Length = 274 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 5e-07
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 1215 RIELRQLKIRYRPNAPLVLK---GITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG 1271
+I+++ + + P LK ++ ++G + ++G+TGSGKTT I L L+ P
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 1272 GSI 1274
G+I
Sbjct: 62 GTI 64
|
Length = 305 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 40/211 (18%)
Query: 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVN------LYGSIAYVSQ----------TS 667
Q +A+ G G+GKS+L + G I SG + +G ++ S+ TS
Sbjct: 40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTS 99
Query: 668 W--------IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
I +R N + + + ++ L D N+
Sbjct: 100 LNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH----------M 149
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVT 776
L+ GQKQR+ LARA+ I + D+ +++D + L N +M L++K + I VT
Sbjct: 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLIN--LMLELQEKQGISYIYVT 207
Query: 777 HQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+ + + D++LV+ G++ + G+ ++L
Sbjct: 208 QHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 51/225 (22%)
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV----------NLYG-SIA- 661
R V+ D+ + + + G G+GK++LL I G + +GTV +LY S A
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 662 --YVSQTSWIQSGSIRDNILYG-------------KPMDK-ARYDKAIKACALD----KD 701
+ +T W G + N G + M AR+ I+A A D +
Sbjct: 83 RRRLLRTEW---GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVE 139
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
I DL I SGG +QR+Q+AR + + D+P +D A L +
Sbjct: 140 I------DLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD- 192
Query: 762 CVMAALEKK---TVILVTHQ---VEFLSEVDRILVLEGGQITQSG 800
++ L ++ V++VTH L+ DR++V++ GQ+ +SG
Sbjct: 193 -LLRGLVRELGLAVVIVTHDLAVARLLA--DRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 1257 TTLISALFRLVEPAGGSILIDGVDICSMG-LKDLRVKLSIIPQEPTLF-RGSVRTNLDPL 1314
+TL+ + L++P G+IL+DG D + K LR ++ ++ Q+P LF +VR NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1315 GL--YSDDEIWKV 1325
+D +
Sbjct: 61 LRDKEADARAEEA 73
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
++ L Y VL I+ +G G +G G+GKTT + + L++P G I
Sbjct: 1 LKTNDLTKTYGKK--RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT 58
Query: 1276 IDGVDI 1281
DG
Sbjct: 59 FDGKSY 64
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 6e-07
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 34/212 (16%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQ-----TSWI 669
V+L I + A+ G+ G GKS+LL + G +G + L G +++V
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMF 97
Query: 670 QS------GSIRDNILYGKPMDKARYDKAIKACALDKD-INNFDHGDLT-----EIGQRG 717
QS ++ NI +G DK L K I + + L E +R
Sbjct: 98 QSYALFPHMTVEQNIAFGLKQDK-----------LPKAEIASRVNEMLGLVHMQEFAKRK 146
Query: 718 LN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KTVIL 774
+ LSGGQ+QR+ LAR++ + L D+P A+D + E V+ LE+ T ++
Sbjct: 147 PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE-VVDILERVGVTCVM 205
Query: 775 VTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
VTH Q E ++ RI ++ G+ Q G +E+
Sbjct: 206 VTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
Length = 377 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 6e-07
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE 780
SGG + RI LARA++ + D+ L D+P + +D H A L+ E + KT I+V+H E
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLH--AVLWLETYLLKW-PKTFIVVSHARE 402
Query: 781 FL-SEVDRILVLEGGQI-TQSGNY 802
FL + V IL L G ++ T G+Y
Sbjct: 403 FLNTVVTDILHLHGQKLVTYKGDY 426
|
Length = 718 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 1213 KGRIELRQLK-IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG 1271
+ L QL+ + Y +L I+ + G + G +G GK+TL+ + L+ P
Sbjct: 2 QENSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS 61
Query: 1272 GSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
G++L +G DI ++ + R ++S Q PTLF +V NL
Sbjct: 62 GTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNL 101
|
Length = 225 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 7e-07
Identities = 52/199 (26%), Positives = 96/199 (48%), Gaps = 42/199 (21%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLL------------YAILGEIPKISGTVNLYG-- 658
L+G++++I+ +A G G GKS+ L + GEI +I G N+Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI-RIDGR-NIYDKG 76
Query: 659 --------SIAYVSQTSWIQSGSIRDNILYGKPMD--------KARYDKAIKACALDKDI 702
++ V Q SI +N+ YG ++ + R ++ +K AL ++
Sbjct: 77 VQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV 136
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ ++ + LSGGQ+QR+ +ARA+ + L D+P SA+D + A + E
Sbjct: 137 KD-------KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV--EE 187
Query: 763 VMAALEKK-TVILVTHQVE 780
++ L+K T+++VTH ++
Sbjct: 188 LIHELKKDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 8e-07
Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 52/228 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L VN+ I +A+ G G+GKS+LL + G + SGTV + G + +
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITAGKKNKKLK 81
Query: 673 SIRD--------------------NILYGKPMD--------KARYDKAIKACALDKDI-- 702
+R +I +G PM+ K + + I+ L +++
Sbjct: 82 PLRKKVGIVFQFPEHQLFEETVEKDICFG-PMNFGVSEEDAKQKAREMIELVGLPEELLA 140
Query: 703 -NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ F+ LSGGQ +R+ +A + + ++ + D+P + +D +
Sbjct: 141 RSPFE-------------LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME- 186
Query: 762 CVMAALEKK---TVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805
+ L K+ T +LVTH +E + D+I+V+ G + G +E+
Sbjct: 187 -MFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
Length = 290 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 8e-07
Identities = 75/310 (24%), Positives = 139/310 (44%), Gaps = 38/310 (12%)
Query: 518 IFLGCALTGSA---PLNASTIF-TVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAF- 572
+ +GCAL +A ++A+ I VLA L G P+ M+ AL I+ Q +++ R+ F
Sbjct: 250 LLIGCALFAAAMFASIDAAAISAFVLALLYIKG-PLEMLVSALPILAQAQIACQRLADFG 308
Query: 573 ---------LLDHELNNDDVRRISLQKSDRSVKIQEGNFSW-DPELAIPTLRG-VNLDIK 621
L + D+V ++ KS S+++++ + + PE + G ++L I
Sbjct: 309 ERFNEPEPELELSD--ADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIA 366
Query: 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAYVSQTSWIQSGS------- 673
+ + G G GKS+L G G + L G+ ++ S+ + S
Sbjct: 367 QGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFH 426
Query: 674 IRDNILYGKPMDKARYDKA---IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730
+ D+++ + A D A ++ + + D G T LS GQ++R+ L
Sbjct: 427 LFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTT-----ALSTGQQKRLAL 481
Query: 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KTVILVTHQVEFLSEVDRI 788
A D I LFD+ ++A F E ++ L++ KT+I+++H ++ D+I
Sbjct: 482 ICAWLEDRPILLFDE-WAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQI 540
Query: 789 LVLEGGQITQ 798
+ L G I +
Sbjct: 541 IKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 9e-07
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 27/191 (14%)
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------IAYVSQTSWIQSGSIRD 676
G G GKS+LL + I SGT+ G ++Y +QT + ++ D
Sbjct: 40 GPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYD 99
Query: 677 NILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN-LSGGQKQRIQLARAVY 735
N+++ + + D A D+ F D I + + LSGG+KQRI L R +
Sbjct: 100 NLIFPWQIRNQQPDPA----IFLDDLERFALPD--TILTKNIAELSGGEKQRISLIRNLQ 153
Query: 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK--TVILVTHQVEFLSEVDRILVLEG 793
+ L D+ SA+D NE + + ++ V+ VTH + ++ D+++ L+
Sbjct: 154 FMPKVLLLDEITSALDESN-KHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ- 211
Query: 794 GQITQSGNYQE 804
+G QE
Sbjct: 212 ---PHAGEMQE 219
|
Length = 225 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 9e-07
Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 30/228 (13%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI 660
+F E +I ++ ++ +I + + G+ GAGKS+ L + G + SG V + G
Sbjct: 28 HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD 87
Query: 661 ------AYVSQTSWI---QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
Y+ + + D +D K I D+ D LT
Sbjct: 88 PFRRREEYLRSIGLVMGQKLQLWWDLPA----LDSLEVLKLIYEIPDDEFAERLD--FLT 141
Query: 712 EI-------GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN---- 760
EI LS GQ+ R +LA A+ + + D+P +D + A +
Sbjct: 142 EILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE 201
Query: 761 ECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLL 807
+ TV+L TH + ++ + DR+L+++ GQ+ G +L
Sbjct: 202 YNEE---RQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246
|
Length = 325 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 50/215 (23%), Positives = 101/215 (46%), Gaps = 28/215 (13%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL------YGSIAYVSQTSWI 669
++ ++ Q +A+ G G+GKS+L + G I SG + + +G +Y SQ +
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRM 91
Query: 670 ----QSGSIRDNILYGKPMD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN----- 719
S S+ + +D R + ++ +K I L ++G +
Sbjct: 92 IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIE----TLRQVGLLPDHASYYP 147
Query: 720 --LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVIL 774
L+ GQKQR+ LARA+ + + D+ +++D + L N +M L++K + I
Sbjct: 148 HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN--LMLELQEKQGISYIY 205
Query: 775 VTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLA 808
VT + + + D++LV+ G++ + G+ ++L +
Sbjct: 206 VTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 9e-07
Identities = 58/247 (23%), Positives = 98/247 (39%), Gaps = 55/247 (22%)
Query: 605 DPELAIPTLRGVNLDIKWAQKI---------------AVCGSVGAGKSSLLYAILGEIPK 649
D + A P + VNL + +A K ++ G G+GK++ L + K
Sbjct: 14 DVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDK 73
Query: 650 ISG-------------------TVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYD 690
+SG + + + Q SI DN+L G K
Sbjct: 74 VSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR 133
Query: 691 KAIKACALDKDINNFDHGDLTEIG----------QRGLNLSGGQKQRIQLARAVYNDADI 740
K + A LTE+G LSGGQ+Q + LAR + + ++
Sbjct: 134 KEFRGVA---------QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEV 184
Query: 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQS 799
L D+P SA+D T + E + + ++ TVI+VTH + + + DR + G++ +
Sbjct: 185 LLLDEPTSALDPTTTEKI-EEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEE 243
Query: 800 GNYQELL 806
G ++L
Sbjct: 244 GPTEQLF 250
|
Length = 276 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-06
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV----KLSIIP 1297
+G ++G +GSGK+T + L RL+EP G I IDG +I +LR K+ ++
Sbjct: 18 KGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVF 77
Query: 1298 QEPTLF 1303
Q+ LF
Sbjct: 78 QQFALF 83
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 1216 IELRQLKIRYRP--NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
+E+ L Y A ++ ++ EG G++G G+GKTTL+ + L+ P G
Sbjct: 2 LEVTDLTKSYGSKVQA---VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGK 58
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTNL 1311
+ IDGVD +R K+ ++ E L+ R + R NL
Sbjct: 59 VTIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENL 96
|
Length = 245 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 1e-06
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----P 1269
+IE+R LK+ + VL G+ + T ++G +GSGK+TL+ RL+E
Sbjct: 3 KIEIRDLKVSF--GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 1270 AGGSILIDGVDICSMGLKDLRVKLSIIPQEP 1300
G + +DG DI M + +LR ++ ++ Q P
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIP 91
|
Length = 250 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 1192 HIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGR 1251
+P + P ++E + +P KG +R + + GI+ T G +G+VG
Sbjct: 268 PLPEDAPVLLEVEDLRVWFPIKGGF------LRRTVDHLRAVDGISLTLRRGQTLGLVGE 321
Query: 1252 TGSGKTTLISALFRLVEPAGGSILIDGVDICSM---GLKDLRVKLSIIPQEP 1300
+GSGK+TL AL RL+ G I DG DI + ++ LR ++ ++ Q+P
Sbjct: 322 SGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP 372
|
Length = 534 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E R LK Y P+ LKGI +G V ++G G+GK+TL +++P G +L
Sbjct: 2 LETRDLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 1276 IDG--VDICSMGLKDLRVKLSIIPQEP--TLFRGSVRTNL--DPLGL-YSDDEIWK 1324
I G + L ++R + I+ Q P LF +V ++ PL L S +E+ K
Sbjct: 61 IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK 116
|
Length = 275 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-06
Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 34/209 (16%)
Query: 611 PTL-RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----IAYVSQ 665
P L + +N I +IA+ G G GKS++L I GE+ SGTV + S +A SQ
Sbjct: 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV--FRSAKVRMAVFSQ 579
Query: 666 TSWIQSGSIRDN-ILY------GKPMDKARYDKAIKACALDKDINNFD-HGDLTEIGQRG 717
+ + N +LY G P K R + +F G+L Q
Sbjct: 580 HH-VDGLDLSSNPLLYMMRCFPGVPEQKLR-----------AHLGSFGVTGNLAL--QPM 625
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
LSGGQK R+ A+ + I L D+P + +D L V L + V++V+H
Sbjct: 626 YTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLV---LFQGGVLMVSH 682
Query: 778 QVEFLS-EVDRILVLEGGQITQ-SGNYQE 804
+S VD + V+ G++T G + +
Sbjct: 683 DEHLISGSVDELWVVSEGKVTPFHGTFHD 711
|
Length = 718 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 56/221 (25%), Positives = 95/221 (42%), Gaps = 39/221 (17%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLY----------------AILGEIPKISG----TVN 655
+++DI+ A+ G G GKS+ L IL E I VN
Sbjct: 40 ISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99
Query: 656 LYGSIAYVSQTSWIQSGSIRDNIL----YGKPMDKARYDKAIK----ACALDKDINNFDH 707
L I V Q SI +NI Y K+ D+ ++ AL ++ + H
Sbjct: 100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLH 159
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
L+LSGGQ+QR+ +AR + + L D+P SA+D + A + E ++ L
Sbjct: 160 -------SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI--EELITEL 210
Query: 768 EKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+++ ++I+VTH ++ V DR G + + +++
Sbjct: 211 KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251
|
Length = 268 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 2e-06
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI- 1274
IEL L Y L+LK I+ T + G R+G+VGR G+GK+TL+ + +EP G +
Sbjct: 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 1275 LIDGVDIC-----SMGLKDLRVKLSII 1296
V I S G K +R+ L+ +
Sbjct: 59 WGSTVKIGYFEQLSGGEK-MRLALAKL 84
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I + + RY A LK ++ + EG V +VG GSGK+TL L L+ P G+I
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEP 1300
+ G+ + + D+R ++ ++ Q P
Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQNP 90
|
Length = 279 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + Y P L ++ +G + + G +G+GKTTL+ L+ + P+ G +
Sbjct: 2 IEFHNVSKAY-PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 1276 IDGVDICSMGLKD---LRVKLSIIPQE 1299
I G D+ + + LR ++ ++ Q+
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQD 87
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 39/221 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV---------------NLY 657
L+G+N++IK + A+ G GAGKS+L + G + SG + L
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 658 GSIAYVSQTSWIQ--SGSIRDNILYGK-----PMDKA--RYDKAIKACALDKDINNFDHG 708
S+ V Q Q S S+ ++ +G P D+ R D A+K ++ + H
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHC 141
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
LS GQK+R+ +A + + + + D+P + +D + + + ++ +
Sbjct: 142 -----------LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM-KLLVEMQK 189
Query: 769 KK--TVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELL 806
+ T+I+ TH ++ + D + V++ G++ GN +E+
Sbjct: 190 ELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
|
Length = 283 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-06
Identities = 48/204 (23%), Positives = 98/204 (48%), Gaps = 19/204 (9%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
P + +N+ Q A G GAGK++ L + G +P SGTV + G + + Q
Sbjct: 944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQ 1003
Query: 671 S-------------GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
S ++ ++IL+ + +++A L+ + D G + +
Sbjct: 1004 SLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEA----QLEMEAMLEDTGLHHKRNEEA 1059
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
+LSGG ++++ +A A DA + + D+P S VD ++ +++ + ++ +T+I+ TH
Sbjct: 1060 QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIW-DLLLKYRSGRTIIMSTH 1118
Query: 778 QVEFLSEV-DRILVLEGGQITQSG 800
++ + DRI ++ G++ SG
Sbjct: 1119 HMDEADLLGDRIAIISQGRLYCSG 1142
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 24/185 (12%)
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQT-SWIQSGSIRD 676
I ++ I + G G GK++ + + G + G + + +++Y Q G++RD
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD 80
Query: 677 NILYGKPMDK---ARYDKAI-KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732
+L D + I K +++ ++ + LSGG+ QR+ +A
Sbjct: 81 -LLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAA 128
Query: 733 AVYNDADIYLFDDPFSAVDAHT---AATLFNECVMAALEKKTVILVTHQVEFLSEV-DRI 788
+ DADIYL D+P + +D A+ + +KT +V H + + + DR+
Sbjct: 129 CLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN--EKTAFVVEHDIIMIDYLADRL 186
Query: 789 LVLEG 793
+V EG
Sbjct: 187 IVFEG 191
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 3e-06
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
+L+G++ +G V+GR G GKTTL+ L L+ GSI +DG DI + + R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE-RA 73
Query: 1292 KLSI--IPQEPTLF-RGSVRTNL 1311
+ I +PQ +F R +V NL
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENL 96
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ L + Y +L ++ + G ++G G GK+TL+ RL+ P G++
Sbjct: 3 LRTENLTVGY--GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVF 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVR 1308
+ I + + L +L+++PQ G +VR
Sbjct: 61 LGDKPISMLSSRQLARRLALLPQHHLTPEGITVR 94
|
Length = 255 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 3e-06
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 1231 LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290
L +K + EG ++G +GSGK+T++ L RL+EP G +LIDGVDI + +LR
Sbjct: 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELR 101
|
Length = 400 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISAL--FRLVEPAGGSILIDGVDICSMGLKDL 1289
+LK ++ G ++G +G+GK+TL++AL R G +LI+G + +
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL---DKRSF 80
Query: 1290 RVKLSIIPQE----PTLFRGSVRTNLD 1312
R + +PQ+ PTL +VR L
Sbjct: 81 RKIIGYVPQDDILHPTL---TVRETLM 104
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 63/233 (27%)
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT-------- 666
G++L ++ Q + + G G+GKS+L A+L IP G I + Q
Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-------QGEIRFDGQDIDGLSRKE 357
Query: 667 -----SWIQ--------SGSIRDNI---------LYGKPMDKARYDK----AIKACALDK 700
+Q S S R + ++ + A D+ A++ LD
Sbjct: 358 MRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP 417
Query: 701 DI-NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
N + H SGGQ+QRI +ARA+ ++ L D+P SA+D A +
Sbjct: 418 ATRNRYPH-----------EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVL 466
Query: 760 NECVMAALEKK---TVILVTHQ---VEFLSEVDRILVLEGGQITQSGNYQELL 806
+ ++ L++K + + ++H V L R++V+ G+I + G + +
Sbjct: 467 D--LLRDLQQKHGLSYLFISHDLAVVRALC--HRVIVMRDGKIVEQGPTEAVF 515
|
Length = 534 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+ L +Y ++G++ G G++G G+GKTT I L L++P G
Sbjct: 1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTL 1302
+ G D+ +++R ++ I+ Q+ ++
Sbjct: 59 VAGHDVVREP-REVRRRIGIVFQDLSV 84
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278
LK I+ +G RVG++G G+GK+TL+ + + +P G + + G
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG 88
|
Length = 249 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 4e-06
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 1223 IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC 1282
+ R +L ++ T G V ++G G+GK+TL+ AL + P G + ++G +
Sbjct: 8 LSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLA 67
Query: 1283 SMGLKDLRVKLSIIPQEPTL 1302
+L + +++PQ +L
Sbjct: 68 DWSPAELARRRAVLPQHSSL 87
|
Length = 258 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 49/211 (23%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL--------------YGSIA 661
V+L + + + + G GAGK++ Y ++G +P+ +G + + I
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81
Query: 662 YVSQTSWI-QSGSIRDNILYGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
Y+ Q + I + S+ DN++ + D + + +A L ++ + D +GQ
Sbjct: 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD--SMGQ--- 136
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK--TVILVT 776
+LSGG+++R+++ARA+ + L D+PF+ VD + + + ++ L V++
Sbjct: 137 SLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI--KRIIEHLRDSGLGVLITD 194
Query: 777 HQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
H V E L+ +R ++ G + G E+L
Sbjct: 195 HNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225
|
Length = 241 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG----LKD 1288
+ + F +G +VG+TGSGK+TLI + L++P G++ +D + I ++
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 1289 LRVKLSIIPQ--EPTLFRGSV 1307
+R ++ ++ Q E LF +V
Sbjct: 83 VRKRIGMVFQFPESQLFEDTV 103
|
Length = 286 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 4e-06
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 35/222 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI--LGEI----PKISGTVNLYGSIAY---- 662
L+ + + I + G G+GKS+LL + L EI K+ G V +G +
Sbjct: 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85
Query: 663 ----------VSQTSWIQSGSIRDNILYGKPM------DKARYDKAIKACALDKDINNFD 706
Q + SI DNI Y P+ +K K ++ C +
Sbjct: 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAY--PLKSHGIKEKREIKKIVEECLRKVGLWKEV 143
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+ L + LSGGQ+QR+ +ARA+ + L D+P S +D + + E ++
Sbjct: 144 YDRLNSPASQ---LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI--EKLITE 198
Query: 767 LEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
L+ + +++V+H + ++ V D + L G++ + G+ E+
Sbjct: 199 LKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 5e-06
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 1207 PSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL 1266
SS K I R+ ++ LK ++ G R+G++GR G+GK+TL+ L +
Sbjct: 16 GSSSLKKLGILGRKGEVGEFW----ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI 71
Query: 1267 VEPAGGSILIDG 1278
P G++ + G
Sbjct: 72 YPPDSGTVTVRG 83
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE R L Y + L I +R+ V+G G+GK+TL +++P GS+L
Sbjct: 4 IETRDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEP 1300
I G I ++++R + ++ Q P
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNP 87
|
Length = 277 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-06
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 1230 PLVLK---GITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL 1286
P LK G+T EG +GVVG +G GK+T A+ LV+ G + G D+ M
Sbjct: 31 PKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKD 90
Query: 1287 KDLRVK---LSIIPQEP 1300
+ R + +I Q+P
Sbjct: 91 DEWRAVRSDIQMIFQDP 107
|
Length = 331 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 1216 IELRQLKIRYRPNAP-LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
IE++ L +Y+ + L ++ +G + ++G GSGK+T + + L+E G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEP 1300
+IDG + + D+R K+ ++ Q P
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNP 90
|
Length = 279 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-06
Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 42/233 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
+ VN + + + A+ G G+GKS+L+ I + +GTV +
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 659 ---SIAYVSQ--TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
I V Q S + ++ I++G K D+ +K A L ++
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDE-VKNYAHRL---------LMDL 132
Query: 714 G-------QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA---HTAATLFNECV 763
G Q +SGGQ ++I + + + DI + D+P + +D L
Sbjct: 133 GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS-- 190
Query: 764 MAALEKKTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+ E KT+ILV+H + E D ++V++ G I + +EL
Sbjct: 191 LQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADW 243
|
Length = 286 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 40/222 (18%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYGS-------- 659
L+GVNL +K + A+ G G+GKS+L I G P SGT+ G
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPD 72
Query: 660 ----------------IAYVSQTSWIQSGS-IRDNILYGKPMDKARYDKAIKACALDKDI 702
I VS +++S R + +P+D + K +KA +
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM 132
Query: 703 NNFDHGDLTEIGQRGLN--LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
+ E R +N SGG+K+R ++ + + + + D+ S +D +
Sbjct: 133 DE-------EFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 761 ECVMAALEKKTVILVTHQVEFLSEV--DRILVLEGGQITQSG 800
++ +++TH L+ + D + VL G+I +SG
Sbjct: 186 GINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-06
Identities = 58/267 (21%), Positives = 106/267 (39%), Gaps = 68/267 (25%)
Query: 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL 644
R+ + +K+ L+ P + V+ ++ + + V G +GAG++ L+ +
Sbjct: 248 RLDKAPGEVRLKVDN--------LSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLY 299
Query: 645 GEIPKISGTVNLYGS--------------IAYVSQT----SWIQSGSIRDNILYGKPMDK 686
G +P+ SG V L G I Y+S+ + S+++N+
Sbjct: 300 GALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENM-------- 351
Query: 687 ARYDKAIKACALD---KDINNFDHGDLTE---------------IGQRGLNLSGGQKQRI 728
AL + + H D + + Q LSGG +Q++
Sbjct: 352 -------SLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKV 404
Query: 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV-EFLSEVDR 787
+AR + + + D+P VD ++ E ++ILV+ ++ E L DR
Sbjct: 405 AIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDR 464
Query: 788 ILVLEGGQITQSGNY------QELLLA 808
ILV+ G+I SG + QE L+A
Sbjct: 465 ILVMHEGRI--SGEFTREQATQEKLMA 489
|
Length = 501 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 5e-06
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 39/210 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQS 671
L VNL ++ A+ G GAGKS+LL + G K SG++ G I + S +++
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 672 G--------------SIRDNILYGK-PM-------DKARYD-KAIKACALDKDINNFDHG 708
G S+ DN+ G+ P DK D KAI LD DI+
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFD-ELDIDIDPRA-- 130
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
+ LS Q Q I++A+A +A I + D+P S++ LF ++ L+
Sbjct: 131 -------KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT--IIRKLK 181
Query: 769 KK--TVILVTHQVEFLSEV-DRILVLEGGQ 795
++ ++ ++H++E + ++ D I +L GQ
Sbjct: 182 ERGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 6e-06
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 40/188 (21%)
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SI-----AYVSQTS 667
G++ + + + + G GAGK+SLL + G +G V G I Y
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77
Query: 668 WI--QSGSIRD------NILYGKPMDKARYDKAIKACALDKDINNFDHGD-LTEIGQRGL 718
++ Q G I+ N+ + L ++ + L ++G G
Sbjct: 78 YLGHQPG-IKTELTALENLRF--------------YQRLHGPGDDEALWEALAQVGLAGF 122
Query: 719 ------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKK- 770
LS GQ++R+ LAR A +++ D+PF+A+D A L E ++A E+
Sbjct: 123 EDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARL--EALLAQHAEQGG 180
Query: 771 TVILVTHQ 778
VIL THQ
Sbjct: 181 MVILTTHQ 188
|
Length = 204 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQ 778
LSGGQKQR+ +A + + + + D+ S +D L + E T+I +TH
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202
Query: 779 VEFLSEVDRILVLEGGQITQSGNYQEL 805
+ E D ++V+ G + + G E+
Sbjct: 203 LSEAMEADHVIVMNKGTVYKEGTPTEI 229
|
Length = 269 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-06
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+ L RY+ + LKG++ + EG++ ++G G+GK+TL+ L + P G +
Sbjct: 5 IEVEDLHFRYK-DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEP--TLFRGSV 1307
+ G ++ + K +R K+ ++ Q+P +F +V
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTV 97
|
Length = 274 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 51/237 (21%), Positives = 89/237 (37%), Gaps = 56/237 (23%)
Query: 626 IAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI-------------AYVSQTSWIQSG 672
+ + G GAGKS+LL + G SG++ G AY+SQ
Sbjct: 28 LHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARHRAYLSQ------- 79
Query: 673 SIRDNILYGKPM---------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
+ + P+ DK R L+ D ++G+ LSGG
Sbjct: 80 --QQTPPFAMPVWHYLTLHQPDKTR------TELLNDVAGALALDD--KLGRSTNQLSGG 129
Query: 724 QKQRIQLARAVYN-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVT 776
+ QR++LA V + L D+P +++D + L + +++ +
Sbjct: 130 EWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSS 189
Query: 777 HQVEF-LSEVDRILVLEGGQITQSGNYQELLLA-------GTAFEQL-VNAHRDAIT 824
H + L R +L+ G++ SG +E+L G F +L + H I+
Sbjct: 190 HDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAYGMNFRRLDIEGHPMLIS 246
|
Length = 248 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 7e-06
Identities = 55/242 (22%), Positives = 98/242 (40%), Gaps = 39/242 (16%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658
+F + A L V+ ++ + +A+ G GAGKS+L + G +++ G
Sbjct: 8 SFRYGARRA---LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHD 64
Query: 659 ----------SIAYVSQTSWIQSG-SIRDNILY-----GKPMDKARYDKAIKACALDKDI 702
+ V Q + S+R N+ Y G +AR I +
Sbjct: 65 LRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR--ARIAELLARLGL 122
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ E L+GG ++R+++ARA+ + + L D+P +D + A +
Sbjct: 123 AERADDKVRE-------LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI-TAH 174
Query: 763 V--MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA------GTAFEQ 814
V +A + +V+ TH V+ + DR++VL G++ G EL A AF
Sbjct: 175 VRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGADLEAAFLA 234
Query: 815 LV 816
L
Sbjct: 235 LT 236
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 8e-06
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ELR + + L G++ T G ++G G+GK+TL+ L + P G IL
Sbjct: 9 LELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL 66
Query: 1276 IDGVDICSMGLKD-LRVKLSIIPQEPTLF 1303
IDG + +D L ++ + QE +L
Sbjct: 67 IDGKPVAFSSPRDALAAGIATVHQELSLV 95
|
Length = 500 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 8e-06
Identities = 23/40 (57%), Positives = 27/40 (67%)
Query: 1272 GSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
G IL+DGVDIC LKDLR SI+ QEP LF S+ N+
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENI 1316
|
Length = 1466 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-06
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 1228 NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG-L 1286
L L + +G + ++GR GSGK+T+ + L+ P+ G + +DG+D L
Sbjct: 21 TEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENL 80
Query: 1287 KDLRVKLSIIPQEP 1300
D+R K ++ Q P
Sbjct: 81 WDIRNKAGMVFQNP 94
|
Length = 280 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I + + +Y+ +A LK ++ +G +VG GSGK+T+ + + + G I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEP-TLFRGSV 1307
+ I + LR + I+ Q P F GS+
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSI 100
|
Length = 269 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PA 1270
IE+ L + Y LK I + ++G +G GK+TL+ +L R+ +
Sbjct: 2 IEIENLNLFYGEKE--ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRI 59
Query: 1271 GGSILIDGVDICSMGLKD--LRVKLSIIPQEPTLFRGSVRTN 1310
G +L DG DI + LR ++ ++ Q+P F S+ N
Sbjct: 60 EGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDN 101
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG-- 1271
G I + L++ Y N VL ++ G + ++G++G GKTTL+ A+ V+ AG
Sbjct: 4 GGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 1272 GSILIDGVDI 1281
G I I D+
Sbjct: 62 GRIAIADRDL 71
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292
+ G+ EG G +G G+GKTT I L L+ P G+ + G D+ K +R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK-VRRS 67
Query: 1293 LSIIPQEPTLFRG-SVRTNL 1311
+ I+PQ ++ + R NL
Sbjct: 68 IGIVPQYASVDEDLTGRENL 87
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292
+K ++ T EG + ++G GSGK+TL L ++EP G ILI+ + G R K
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL-HFGDYSFRSK 87
Query: 1293 L-SIIPQEPTLFRGSVRTNLDP---LGLYSDDEIWKVSQLTPNSRNSRI 1337
+I Q+P T+L+P +G D + + L P R +I
Sbjct: 88 RIRMIFQDPN-------TSLNPRLRIGQILDFPLRLNTDLEPEQRRKQI 129
|
Length = 267 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 26/202 (12%)
Query: 627 AVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVS---------------QT-SWIQ 670
+ G GAGK++L+ I G+ G V G Q + +
Sbjct: 35 VLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFE 94
Query: 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHG----DLTEIGQR-GLNLSGGQK 725
+ ++R+N+ DK+ + ++ A ++ D L + R LS GQK
Sbjct: 95 NLTVRENLELALNRDKSVF-ASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153
Query: 726 QRIQLARAVYNDADIYLFDDPFSAV-DAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784
Q +++ + D + L D+P + + DA T T E + + K ++++V H + F+ E
Sbjct: 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKT--AELLKSLAGKHSILVVEHDMGFVRE 211
Query: 785 V-DRILVLEGGQITQSGNYQEL 805
+ D++ VL G + G+ E+
Sbjct: 212 IADKVTVLHEGSVLAEGSLDEV 233
|
Length = 249 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 1221 LKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG-- 1278
L RY+ + P VLKG+ FS G+VG G GK+TL L L+ P G++L G
Sbjct: 7 LWFRYQ-DEP-VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKP 64
Query: 1279 VDICSMGLKDLRVKLSIIPQEP 1300
+D GL LR +++ + Q+P
Sbjct: 65 LDYSKRGLLALRQQVATVFQDP 86
|
Length = 271 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 1216 IELRQLKIRYRPNAPL--VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
++ L RY+ VLKG++ + +G V +VG +GSGK+TL+ L L P G
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 1274 ILIDGVDICSM 1284
+L +G + +
Sbjct: 62 VLFNGQSLSKL 72
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISAL--FRLVEPAGGSILIDGVDICSMGLKDL 1289
+LKG+ T +G ++G GSGK+TL + E G IL G DI + +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDL-PPEE 73
Query: 1290 RVKLSII--PQEPTLFRG 1305
R +L I Q P G
Sbjct: 74 RARLGIFLAFQYPPEIPG 91
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 53/214 (24%), Positives = 87/214 (40%), Gaps = 43/214 (20%)
Query: 628 VCGSVG---AGKSSLLYAILGEIPKISGTVNLYGS-------------IAYVSQTSWIQS 671
V G +G +GKS+LL + P G + L +AY+ Q
Sbjct: 39 VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAE 98
Query: 672 G-SIRDNILYGK-----------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
G ++R+ + G+ D+ + ++AI L + R ++
Sbjct: 99 GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV------------GLKPLAHRLVD 146
Query: 720 -LSGGQKQRIQLARAVYNDADIYLFDDPFSAVD-AHTAATLFNECVMAALEKKTVILVTH 777
LSGG++QR +A V D+ L D+P SA+D AH L ++ TVI V H
Sbjct: 147 SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLH 206
Query: 778 QVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810
+ + D ++ L GG++ G EL+ T
Sbjct: 207 DINMAARYCDYLVALRGGEMIAQGTPAELMRGET 240
|
Length = 265 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 58/250 (23%), Positives = 100/250 (40%), Gaps = 42/250 (16%)
Query: 568 RINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIA 627
+ A LD + ++ + I R I+ LR +NL+IK +A
Sbjct: 365 KTFASELDIKGLPNEFQDILESFGVRQRVIER-----------YVLRNLNLEIKPGDVVA 413
Query: 628 VCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKA 687
V G GAGK++LL ILG SG + +
Sbjct: 414 VVGQSGAGKTTLLRMILGAQKGRGEEK------------YRPDSGKVEVPKNTVSALIPG 461
Query: 688 RYDKAIKACALDKDINNFDHGDLT---EIGQR-GLN-----------LSGGQKQRIQLAR 732
Y+ + + + + GDL EI R GL+ LS GQK+R +LA+
Sbjct: 462 EYEPEFGEVTILEHLRS-KTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAK 520
Query: 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSEV--DRIL 789
+ ++ L D+ + +D TA + + A E T+I+VTH+ E + + D ++
Sbjct: 521 LLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLI 580
Query: 790 VLEGGQITQS 799
++ G++ +
Sbjct: 581 LVGYGKVPVN 590
|
Length = 593 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 63/220 (28%), Positives = 95/220 (43%), Gaps = 43/220 (19%)
Query: 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWI-QSGSIRDNILYG 681
KI V G GAGKS+LL + G + +G + Y+ Q + + ++R+N+ G
Sbjct: 33 KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEG 92
Query: 682 -----KPMDK------------ARYDKAIKACA-LDKDINNFDHGDLT---EIGQRGL-- 718
+D+ A D + A L + I+ D DL EI L
Sbjct: 93 VAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC 152
Query: 719 --------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-- 768
LSGG+++R+ L R + + D+ L D+P + +DA + A L L+
Sbjct: 153 PPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ-----HLQEY 207
Query: 769 KKTVILVTHQVEFLSEVDR-ILVLEGGQ-ITQSGNYQELL 806
TV+ VTH FL V IL L+ G+ I GNY L
Sbjct: 208 PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWL 247
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 48/214 (22%), Positives = 91/214 (42%), Gaps = 31/214 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQS 671
L ++L + + + G GAGK++++ I G+ G+V G + + + ++
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 672 G--------------SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
G ++ +N+ P DK+ + A L + + L IG
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVF--ASLFFRLSAEEKDRIEEVLETIGLAD 135
Query: 718 L------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAV-DAHTAAT--LFNECVMAALE 768
LS GQKQ +++ + D + L D+P + + D T T L +A
Sbjct: 136 EADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS--LA--G 191
Query: 769 KKTVILVTHQVEFLSEV-DRILVLEGGQITQSGN 801
K +V++V H +EF+ + D++ VL G + G+
Sbjct: 192 KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
+LKG+ G V +VG +GSGK+TL++ L L +P+ G + + G + + +D R
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLD-EDARA 83
Query: 1292 KL 1293
L
Sbjct: 84 AL 85
|
Length = 228 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 1216 IELRQLKIRYRPNAPL---VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I L + PL L G++ +EG V V+G G+GK+TL++A+ ++P G
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEP 1300
ILIDGVD+ + L+ + Q+P
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDP 89
|
Length = 263 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ R L ++ +G++ T + G + V G G GKTTL+ L L+ P G +
Sbjct: 1 LAARNLA--CSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVR 58
Query: 1276 IDGVDI 1281
+G +
Sbjct: 59 WNGTAL 64
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-05
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 706 DHGDLTEIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNE 761
+ L + R ++ LSGG+ QR+ +A A+ DAD+Y FD+P S +D AA + E
Sbjct: 199 ERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRE 258
Query: 762 CVMAALEKKTVILVTH 777
A + K VI+V H
Sbjct: 259 ---LAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 25/93 (26%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVT 776
LSGG QR+ +A A+ + + D+P +A+D A + ++ L++K ++L+T
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIE--LLLELQQKENMALVLIT 211
Query: 777 HQVEFLSEV-DRILVLEGGQITQSGNYQELLLA 808
H + ++E +I+V+ GQ+ ++G ++ A
Sbjct: 212 HDLALVAEAAHKIIVMYAGQVVETGKAHDIFRA 244
|
Length = 326 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 36/226 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQTSWIQ 670
L V+L++K + + + G GAGKS+L+ +LG + G + G I YV Q ++
Sbjct: 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYL- 78
Query: 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDI----NNFDHGDLTEIGQRGLNLSGGQKQ 726
D L P+ R+ + ++ +DI G L + LSGG+ Q
Sbjct: 79 -----DTTL---PLTVNRFLR-LRPGTKKEDILPALKRVQAGHLID--APMQKLSGGETQ 127
Query: 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTHQVEF-L 782
R+ LARA+ N + + D+P VD + L++ ++ L ++ V++V+H + +
Sbjct: 128 RVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD--LIDQLRRELDCAVLMVSHDLHLVM 185
Query: 783 SEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGP 828
++ D +L L + +GT ++V+ H + I+ GP
Sbjct: 186 AKTDEVLCLN----------HHICCSGTP--EVVSLHPEFISMFGP 219
|
Length = 251 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-05
Identities = 67/291 (23%), Positives = 119/291 (40%), Gaps = 54/291 (18%)
Query: 555 ALSIMIQVKVSFDRINAFLLD---HELN----NDDVRRISLQKSDRSVKIQEGNFSWDPE 607
AL ++ +V+F+++N L E D + + L+ + + Q+ FS P
Sbjct: 285 ALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELR--NVTFAYQDNGFSVGP- 341
Query: 608 LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------I 660
+NL IK + + + G G+GKS+L + G SG + L G
Sbjct: 342 --------INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPE 393
Query: 661 AYVSQTSWIQSGSIRDNILY-------GKPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
Y S + + D L+ GKP + A +K ++ + + G ++ +
Sbjct: 394 DYRKLFSAVFT----DFHLFDQLLGPEGKPANPALVEKWLERLKM-AHKLELEDGRISNL 448
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTV 772
LS GQK+R+ L A+ + DI L D+ + D H + + E KT+
Sbjct: 449 -----KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTI 503
Query: 773 ILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAI 823
++H + DR+L + GQ+++ L G + A RDA+
Sbjct: 504 FAISHDDHYFIHADRLLEMRNGQLSE--------LTGEERDA---ASRDAV 543
|
Length = 547 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE++ L ++ VL GI G V ++G +GSGKTTL+ + L +P G+I
Sbjct: 4 IEVKNLVKKFHGQT--VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61
Query: 1276 IDGVDI 1281
+ + I
Sbjct: 62 VGDITI 67
|
Length = 250 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 1239 TFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQ 1298
++G V ++G +G+GK+TL++ + +EPA GSI ++ GL + +S++ Q
Sbjct: 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSMLFQ 77
Query: 1299 EPTLFRG-SVRTNLDPLGL 1316
E LF +VR N+ LGL
Sbjct: 78 ENNLFAHLTVRQNIG-LGL 95
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 4e-05
Identities = 89/435 (20%), Positives = 155/435 (35%), Gaps = 98/435 (22%)
Query: 507 YWMSPTIISSVIFLGCALTGSAPLN----ASTIFTVLATLRSMGEPVRMIPEALSIMIQV 562
+W II S L+ P N S I +L L SM ++P M +
Sbjct: 299 FWYGTRIIIS------DLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSL 352
Query: 563 KVS---FDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLD 619
+ + ++ IN L NNDD +++ K + ++ + F +D + + +N
Sbjct: 353 EATNSLYEIINRKPLVE--NNDDGKKL---KDIKKIQFKNVRFHYDTRKDVEIYKDLNFT 407
Query: 620 IKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------------IAYVSQ 665
+ + A G G GKS++L I G + + S I VSQ
Sbjct: 408 LTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQ 467
Query: 666 TSWIQSGSIRDNILYG----------------------KPMDKARYDKAIKACALDKDIN 703
+ S SI++NI Y + +K +A A L+ N
Sbjct: 468 DPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527
Query: 704 NFDHGDLTE------------------------------------IGQRGLNLSGGQKQR 727
D +L E +G LSGGQKQR
Sbjct: 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQR 587
Query: 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV--MAALEKKTVILVTHQVEFLSEV 785
I +ARA+ + I + D+ S++D + + L + + + E + I++ H++ +
Sbjct: 588 ISIARAIIRNPKILILDEATSSLD-NKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYA 646
Query: 786 DRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNA----GQGGAEKVE 841
+ I VL + + + + T + N + +N G+ +E
Sbjct: 647 NTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIE 706
Query: 842 KG-RTARPEEPNGIY 855
+G A + NGIY
Sbjct: 707 QGTHDALMKNKNGIY 721
|
Length = 1466 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 4e-05
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
E+R L R+ + ++ G VG++G G+GKTTL + + +P+ G+++
Sbjct: 6 EVRGLSKRF--GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIF 63
Query: 1277 DGVDI 1281
G DI
Sbjct: 64 RGRDI 68
|
Length = 250 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 4e-05
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKG---ITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I+ ++ Y+PN+P + I +G+ ++G TGSGK+TL+ L L++P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 1273 SILIDGVDICSMG----LKDLRVKLSIIPQEP--TLFRGSV 1307
+ + + + S +K +R K+ ++ Q P LF +V
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETV 102
|
Length = 288 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILV 775
NLSGGQKQR+ +A + + I + D+ S +D + ++ L+KK TVI +
Sbjct: 143 NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK--LIRKLKKKNNLTVISI 200
Query: 776 THQVEFLSEVDRILVLEGGQITQSGNYQEL 805
TH ++ + D++LVL+ G++ G+ E+
Sbjct: 201 THDIDEANMADQVLVLDDGKLLAQGSPVEI 230
|
Length = 282 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 48/211 (22%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLY--------- 657
IP L+ + +K + + V G G+G S+LL A+ + G + Y
Sbjct: 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI-HYNGIPYKEFA 78
Query: 658 ----GSIAYVSQTSW-IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
G I YVS+ + ++R+ + D A++ N F G
Sbjct: 79 EKYPGEIIYVSEEDVHFPTLTVRETL-----------DFALRCKG-----NEFVRG---- 118
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC-VMAALEKKT 771
+SGG+++R+ +A A+ + A + +D+ +D+ TA + MA + K T
Sbjct: 119 -------ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 772 VILVTHQ--VEFLSEVDRILVLEGGQITQSG 800
+ +Q E D++LVL G+ G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 5e-05
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+ + R+ L I+ + +G G++G G+GKTT I + ++ P G +L
Sbjct: 1 LEVENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 1276 IDG 1278
DG
Sbjct: 59 FDG 61
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 5e-05
Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 34/228 (14%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
P L+G+NLD + + G+ G GKS+L + G + G V G S+ +
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLL- 73
Query: 671 SGSIRDNI--LYGKPMDKARYDKAIKACALDKDINNFDHGDL----TEIGQR---GLNL- 720
++R + ++ P ++ I +D DI F +L EI +R L L
Sbjct: 74 --ALRQQVATVFQDP------EQQIFYTDIDSDIA-FSLRNLGVPEAEITRRVDEALTLV 124
Query: 721 -------------SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
S GQK+R+ +A A+ A L D+P + +D +
Sbjct: 125 DAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA 184
Query: 768 EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTAFEQ 814
+ VI+ +H ++ + E+ D + VL GQI G E+ A EQ
Sbjct: 185 QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQ 232
|
Length = 271 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 5e-05
Identities = 49/215 (22%), Positives = 84/215 (39%), Gaps = 29/215 (13%)
Query: 617 NLDIKWAQKIAVC--GSVGAGKSSLL------------------YAILGEIPKISGTVNL 656
N + + + C G+ G+GKS+++ YAI + KI L
Sbjct: 29 NTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRL 88
Query: 657 YGSIAYVSQTSWIQ--SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714
I V Q Q +I +I +G +A K + +
Sbjct: 89 RKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE----DYV 144
Query: 715 QRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTV 772
+R LSGGQK+R+ LA + D + + D+P +D N + KK +
Sbjct: 145 KRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRI 204
Query: 773 ILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
I+VTH + + L D ++V+ G++ G+ E+
Sbjct: 205 IMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239
|
Length = 289 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDAD--IYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
+GQ+ LSGG+ QR++LA ++++ +++ D+P + + L
Sbjct: 81 LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGN 140
Query: 771 TVILVTHQVEFLSEVDRILVL------EGGQITQSG 800
TVIL+ H ++ LS D I+ GG++ SG
Sbjct: 141 TVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+++ L ++ LK ++ G ++G TGSGK+ L+ + ++P G IL
Sbjct: 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKIL 57
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
++G DI L + +S +PQ LF
Sbjct: 58 LNGKDI--TNLPPEKRDISYVPQNYALF 83
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD--- 1288
+L + T +G ++G +GSGK+TL++ + L + G + ++G + + K
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 1289 -LRVKLSIIPQEPTLFRG-SVRTNLDPLGL 1316
R KL + Q L +V NLD LGL
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLD-LGL 101
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-05
Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 60/230 (26%)
Query: 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYG 681
QK+ + G G GKS+LL + EI G+ G +A+V+Q + + ++
Sbjct: 28 QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVI-- 85
Query: 682 KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ-----------------RGL------ 718
D R + ++A D + N H T G+ GL
Sbjct: 86 ---DGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQ 142
Query: 719 ------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--- 769
+ SGG + R+ LA+A+ +D+ L D+P + +D A ++ LEK
Sbjct: 143 LERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLD--AVIW-------LEKWLK 193
Query: 770 ---KTVILVTHQVEFLSE-VDRILVLEGGQITQ-SGNYQELLLAGTAFEQ 814
T+IL++H +FL VD+I+ +E + + +GNY ++FE
Sbjct: 194 SYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNY-------SSFEV 236
|
Length = 638 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 7e-05
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG----LKDLRVKLSIIPQEP 1300
+ GR+GSGKTTLI + L P G I+++G + L + ++ + QE
Sbjct: 25 VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEA 84
Query: 1301 TLF-RGSVRTNL 1311
LF SVR NL
Sbjct: 85 RLFPHLSVRGNL 96
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-05
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 18/110 (16%)
Query: 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL-----VE 1268
+ +R L + + +KGI+ G + +VG +GSGK+ ++ L
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA 66
Query: 1269 PAGGSILIDGVDICSMGLKDLRV----KLSIIPQEPTLFRGSVRTNLDPL 1314
GSIL DG D+ + + LR K+ +I QEP T+L+PL
Sbjct: 67 HPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPM-------TSLNPL 109
|
Length = 534 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-05
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMAALEKKTVILV 775
LSGG+ QR+ +A A+ DAD Y FD+P S +D AA L E A + V++V
Sbjct: 139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL---AEDDNYVLVV 195
Query: 776 THQ---VEFLSEVDRILVLEG 793
H +++LS D I L G
Sbjct: 196 EHDLAVLDYLS--DYIHCLYG 214
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-05
Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 53/220 (24%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-SIAYVSQTSW-- 668
L V+L +K + +A+ G G GKS+L ++G E P G V+ G +A +++
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS-QGNVSWRGEPLAKLNRAQRKA 86
Query: 669 ----IQ------------SGSIRDNILYGKPM------DKA----RYDKAIKACALDKDI 702
IQ ++R+ I +P+ DKA R + ++A LD +
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLDDSV 144
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ +R LSGGQ QR+ LARA+ + + + D+ S +D A +
Sbjct: 145 ----------LDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR-- 192
Query: 763 VMAALEKKT---VILVTHQ---VEFLSEVDRILVLEGGQI 796
++ L+++ + +TH VE + R++V++ GQI
Sbjct: 193 LLKKLQQQFGTACLFITHDLRLVERFCQ--RVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 7e-05
Identities = 29/107 (27%), Positives = 58/107 (54%), Gaps = 8/107 (7%)
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
DH D + L+ G+ Q++ +A A+ N + + D+P +A++ T A +F ++
Sbjct: 147 DHKDA--MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFR--LLT 202
Query: 766 ALEKK---TVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808
L + T++L++H ++ LS+ D+I VL GQ ++ +EL+
Sbjct: 203 RLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTT 249
|
Length = 330 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 9e-05
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL 1289
L ++ G GV+G +G+GK+TLI + L P GS+++DG D+ ++ +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSEL 77
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 9e-05
Identities = 27/93 (29%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKT---VILVT 776
LSGG +QR+ +A A+ + + D+P +A+D A + ++ L+K+ VI +T
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ--LIKVLQKEMSMGVIFIT 226
Query: 777 HQVEFLSEV-DRILVLEGGQITQSGNYQELLLA 808
H + ++E+ DR+LV+ G+ ++G+ +++ A
Sbjct: 227 HDMGVVAEIADRVLVMYQGEAVETGSVEQIFHA 259
|
Length = 623 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 9e-05
Identities = 24/89 (26%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTHQ 778
L+ G+ Q++ +A A+ N + + D+P ++++ T A +F + T++L++H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218
Query: 779 VEFLSE-VDRILVLEGGQITQSGNYQELL 806
++ +S+ D+I VL GQ +S +EL+
Sbjct: 219 LQMISQWADKINVLYCGQTVESAPSEELV 247
|
Length = 330 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
L + G+ V ++G +GSGK+TL+ + L +P G I ++G D + +D
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDR-- 72
Query: 1292 KLSIIPQEPTLFRG-SVRTNL 1311
K+ + Q LF+ +VR N+
Sbjct: 73 KIGFVFQHYALFKHLTVRDNI 93
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
+E+R + R+ P V ++ + +G ++G G+GK+TL+ LF L +P G
Sbjct: 5 LEMRGITKRF----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 1274 ILIDGVDICSMGLKD-LRVKLSIIPQEPTLF 1303
I +DG ++ +D +R+ + ++ Q L
Sbjct: 61 IRVDGKEVRIKSPRDAIRLGIGMVHQHFMLV 91
|
Length = 501 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL--VEPA-- 1270
RIE+ L + +LK + + + ++G +G GK+T I L R+ + P
Sbjct: 3 RIEVENLNTYFDDAH--ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 1271 -GGSILIDGVDIC--SMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
G I +DGVDI ++ + +LR K+ ++ Q+P F S+ N+
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNV 104
|
Length = 250 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 25/89 (28%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQ 778
LS G++ R+ LA+ + + I + D+P +D T + + + A E ++T I+V+H
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487
Query: 779 VEFLSEV-DRILVLEGGQITQSGNYQELL 806
++F+ +V DR ++ G+I + G+ +E++
Sbjct: 488 MDFVLDVCDRAALMRDGKIVKIGDPEEIV 516
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM---GLKD 1288
VL ++ + EG VG++GR+G GK+TL L L +PA G++ G D+ + +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 1289 LRVKLSIIPQE 1299
R + ++ Q+
Sbjct: 86 FRRDVQLVFQD 96
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LR 1290
V++ ++ T + G VG++G G+GKTT + +V G+I+ID DI + L R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 1291 VKLSIIPQEPTLFRG-SVRTNL 1311
+ +PQE ++FR SV NL
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNL 99
|
Length = 241 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
+L ++ TF G G++G GSGK+TL+ L R P+ G IL+D + S K
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 1292 KLSIIPQE 1299
K++ +PQ+
Sbjct: 86 KVAYLPQQ 93
|
Length = 265 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 61/207 (29%), Positives = 88/207 (42%), Gaps = 57/207 (27%)
Query: 626 IAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---IAYVSQ---------TSW--IQS 671
+ V G GAGKS+L I G+ SGT+ + G +AYV Q T W I
Sbjct: 351 VGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GETVKLAYVDQSRDALDPNKTVWEEISG 409
Query: 672 GSIRDNILYGKPMDKAR-YDKAIKACALDKDINNFDHGDLTE-IGQRGLNLSGGQKQRIQ 729
G D I GK +R Y NF D + +GQ LSGG++ R+
Sbjct: 410 GL--DIIQLGKREVPSRAYVGRF----------NFKGSDQQKKVGQ----LSGGERNRVH 453
Query: 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK------TVILVTHQVEFLS 783
LA+ + + ++ L D+P + +D T + ALE+ ++++H FL
Sbjct: 454 LAKTLKSGGNVLLLDEPTNDLDVET---------LRALEEALLEFAGCAVVISHDRWFL- 503
Query: 784 EVDR----ILVLEG-GQITQ-SGNYQE 804
DR IL EG + GNY E
Sbjct: 504 --DRIATHILAFEGDSHVEWFEGNYSE 528
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 22/83 (26%)
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---T 754
LD+DI+ LSGG+ QR+ +A A+ DAD Y FD+P S +D
Sbjct: 206 LDRDISE---------------LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLN 250
Query: 755 AATLFNECVMAALEKKTVILVTH 777
A L E E K V++V H
Sbjct: 251 VARLIRE----LAEGKYVLVVEH 269
|
Length = 590 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMAALEKKTVILV 775
+LSGG+ QR+ +A + DAD+YL D+P + +D A +A + T ++V
Sbjct: 453 DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR--IAEEREATALVV 510
Query: 776 THQVEFLSEV-DRILVLEG 793
H + + + DR++V EG
Sbjct: 511 DHDIYMIDYISDRLMVFEG 529
|
Length = 590 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 2e-04
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 1229 APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDI 1281
++ ++ G VG+ G G+G+T L ALF L PA G I +DG +
Sbjct: 12 VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPV 64
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + + + P VL I +G V ++G +GSGK+TL+ + +L E G ++
Sbjct: 2 IEFKNVSKHFGPTQ--VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQE 1299
+DG+ + D +V +I QE
Sbjct: 60 VDGLKV-----NDPKVDERLIRQE 78
|
Length = 240 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 1231 LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDI 1281
++ G++ T + G + + G GSGKTTL+ + L+ PA G+I +DG DI
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI 66
|
Length = 207 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL-----VEP 1269
++E R L Y L I+ F + ++G +G GK+T + L R+
Sbjct: 6 KMEARGLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR 63
Query: 1270 AGGSILIDGVDICSMGLK--DLRVKLSIIPQEPTLFRGSVRTNL 1311
G IL+DG +I + +LR ++ ++ Q+P F S+ N+
Sbjct: 64 VEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENV 107
|
Length = 253 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278
+ ++ T + G + + G G+GKTTL+ L L+ P G + G
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQG 63
|
Length = 209 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL--VEPAG- 1271
+++L QL + + N +K ++ F E + ++G +G GK+T++ ++ R+ + P+
Sbjct: 4 KVKLEQLNVHFGKNH--AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 1272 --GSILIDGVDICSMGLK--DLRVKLSIIPQEPTLF 1303
G IL+D DI G+ +R ++ ++ Q+P F
Sbjct: 62 VTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF 97
|
Length = 252 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 54/232 (23%), Positives = 105/232 (45%), Gaps = 41/232 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQS 671
L ++ D + Q A+ G GAGKS+LL + G +G++ + G + + S T+ + +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 672 G--------------SIRDNILYGKPMDKARY--DKAIKACALDKDINNFDHGDLTEIG- 714
G ++ +N+ G+ K + + A ++ L +G
Sbjct: 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQ---------LEHLGV 130
Query: 715 -----QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-- 767
LS GQ+Q +++A+A+ +A + FD+P S++ A LF V+ L
Sbjct: 131 DIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR--VIRELRA 188
Query: 768 EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
E + ++ V+H++E + + D I V + G+ + + +A +QLV A
Sbjct: 189 EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD----MAQVDRDQLVQA 236
|
Length = 501 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 31/211 (14%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--KISGTVNLYGS-------- 659
+ L G++L+++ + + +CG GAGKS+L+ + G P G + GS
Sbjct: 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIR 73
Query: 660 ------IAYVSQT-SWIQSGSIRDNILYGK----PMDKARYDKAIKAC-ALDKDINNFDH 707
I + Q + + S+ +NI G P + Y+ L +++
Sbjct: 74 DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDAD 133
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
+G G GGQ+Q +++A+A+ A + + D+P S++ L + ++ L
Sbjct: 134 NVTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLD--IIRDL 187
Query: 768 EKKTV--ILVTHQVEFLSEV-DRILVLEGGQ 795
+ V + ++H++ + V D I V+ GQ
Sbjct: 188 KAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 51/183 (27%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT--VNLYGS-------- 659
+P L+ V+L + + +A+ G GAGKS+LL ++ SG V G+
Sbjct: 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80
Query: 660 -----------IAYVSQ---------TSWIQSGSIRDNILYGKPMDKARYDKAIKACALD 699
I YVSQ + + + + G P + AR +A L
Sbjct: 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAAR----ARARELL 133
Query: 700 KDINNFDHGDLTEIGQRGLNL-----SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754
+N I +R +L SGG++QR+ +AR D I L D+P +++DA
Sbjct: 134 ARLN---------IPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAAN 184
Query: 755 AAT 757
Sbjct: 185 RQV 187
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFR---LVEP 1269
G+I ++ L + Y LK I E ++G +G GK+T + L R L+
Sbjct: 1 MGKISVKDLDLFYGDFQ--ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58
Query: 1270 A--GGSILIDGVDI--CSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
G +L+DG DI + + LR ++ ++ Q+P F S+ N+
Sbjct: 59 VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNV 104
|
Length = 250 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL 1289
VLKGI+ G V +VG +GSGK+TL++ L L +P G+ + G D+ ++ L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80
|
Length = 648 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 1225 YRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM 1284
+ P+ + + TF E +G G+GKTT +S L L+ P G++L+ G DI
Sbjct: 938 FEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ET 996
Query: 1285 GLKDLRVKLSIIPQEPTLF 1303
L +R L + PQ LF
Sbjct: 997 NLDAVRQSLGMCPQHNILF 1015
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 60/247 (24%), Positives = 106/247 (42%), Gaps = 47/247 (19%)
Query: 607 ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYGSIAY 662
+ A P + GV+L ++ + +A+ G G+GKS A LG +P + +G V L G
Sbjct: 13 QAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVA 72
Query: 663 VSQTSWIQSGSIRDN-------------------ILYGKPMDKARYDKAIKACALDKDIN 703
+ +I N + GKP D A A++A L+
Sbjct: 73 PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA-- 130
Query: 704 NFDHGDLTEIGQRGLNL-----SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
R L L SGG QR+ +A A+ +A + D+P + +D A +
Sbjct: 131 -----------ARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARI 179
Query: 759 FNECVMAALEKKT--VILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLA--GTAFE 813
+ + + ++K+ ++LVTH + ++ + D + V+ G+I + G+ + L A
Sbjct: 180 L-DLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTR 238
Query: 814 QLVNAHR 820
LV+AH
Sbjct: 239 SLVSAHL 245
|
Length = 254 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 720 LSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
LSGG+K+ LA + +Y+ D+ +D L + ++ VI++
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 776 THQVEFLSEVDRIL 789
TH E D+++
Sbjct: 138 THLPELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 25/205 (12%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI 669
I L V+L I + + + G+ GAGK++LL + G+ SG + G QT+ I
Sbjct: 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI 77
Query: 670 QSGSI---------------RDNILYGKPM-DKARYDKAIKAC-ALDKDINNFDHGDLTE 712
++ +N+ G ++ ++ + IK L ++
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRI----- 132
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV 772
QR +SGG++Q + + RA+ + + L D+P + +F+ + T+
Sbjct: 133 --QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTI 190
Query: 773 ILVTHQV-EFLSEVDRILVLEGGQI 796
LV + L DR VLE G +
Sbjct: 191 FLVEQNANQALKLADRGYVLENGHV 215
|
Length = 237 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS- 1273
+I++R + Y + VLK I F E ++G +G GK+TL+ AL R+ + G+
Sbjct: 4 KIKIRGVNFFYHKHQ--VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 1274 ----ILIDGVDICSMGLK--DLRVKLSIIPQEPTLFRGSVRTNL 1311
+L+D +I S L +LR ++ ++ Q+P F S+ N+
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNV 105
|
Length = 251 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 21/134 (15%)
Query: 1216 IELRQLKIRYRPNAPL-------VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268
+E+R L +R +K ++ T EG + ++G GSGK+TL L ++E
Sbjct: 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 1269 PAGGSILIDGVDIC--SMGLKDLRVKLSIIPQEPTLFRGSVRTNLDP---LGLYSDDEIW 1323
P G +LID + + R+++ I Q+P+ T+L+P + D +
Sbjct: 65 PTSGELLIDDHPLHFGDYSYRSQRIRM--IFQDPS-------TSLNPRQRISQILDFPLR 115
Query: 1324 KVSQLTPNSRNSRI 1337
+ L P R +I
Sbjct: 116 LNTDLEPEQREKQI 129
|
Length = 267 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 59/236 (25%), Positives = 89/236 (37%), Gaps = 63/236 (26%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--------KISGTVNLYGSI---- 660
LR ++L I+ + A+ G GAGKS+LL A+ G++ +++G V L G
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76
Query: 661 ---------AYVSQTSWIQSG---SIRDNILYGK-PMDK-----ARYDKAIKACALDK-D 701
A + Q + Q S R+ +L G+ P + D I AL
Sbjct: 77 DAPRLARLRAVLPQAA--QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG 134
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN---------DADIYLFDDPFSAVD- 751
D+T LSGG+ R+Q AR + L D+P +A+D
Sbjct: 135 ATALVGRDVT-------TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDL 187
Query: 752 AH------TAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800
AH T L + + L + H + DRI +L G I G
Sbjct: 188 AHQHRLLDTVRRLARDWNLGVLA------IVHDPNLAARHADRIAMLADGAIVAHG 237
|
Length = 272 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 4e-04
Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 51/221 (23%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668
+ L V+L ++ + +++CG GAGKS+L+ + G P GT G I + +
Sbjct: 17 GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP--HGTYE--GEIIFEGEE-- 70
Query: 669 IQSGSIRD-----------------------NILYG-KPMDKAR--YDKAIKACA----- 697
+Q+ +IRD NI G + YD
Sbjct: 71 LQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQ 130
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
L DIN NL GQ+Q +++A+A+ A + + D+P +++ A
Sbjct: 131 LKLDIN---------PATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAV 181
Query: 758 LFNECVMAALEKKTV--ILVTHQVEFLSEV-DRILVLEGGQ 795
L + ++ L+ + I ++H++ + + D I V+ G+
Sbjct: 182 LLD--IIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+EL + R+ L + ++G V ++G +G GKTT + + L EP G I
Sbjct: 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 1276 IDGVDICSMGLKD 1288
I G D+ + KD
Sbjct: 59 IGGRDVTDLPPKD 71
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 5e-04
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 1213 KGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL 1266
KG+IE+ + RY RPN P + K +T + +VG TGSGK+T++S L R
Sbjct: 1163 KGKIEIMDVNFRYISRPNVP-IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRF 1217
|
Length = 1466 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 1239 TFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDI 1281
+ SE +G++G G GKTT I L +++P G I I+ +
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV 63
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE------PAGGSILIDGVDICSMG 1285
+LK IT + G++G +GSGK+TL+ L RL+E G +L G DI +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 1286 LKDLRVKLSIIPQEPTLF 1303
LR ++ ++ Q+P F
Sbjct: 85 AIKLRKEVGMVFQQPNPF 102
|
Length = 257 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-04
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 1182 ISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFS 1241
++ ++ + P + + W +ELR + Y + + I T
Sbjct: 294 VAFNKLNKLALAPYKAE--FPRPQAFPDWQ---TLELRNVTFAY-QDNGFSVGPINLTIK 347
Query: 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
G + ++G GSGK+TL L L +P G IL+DG + + +D R S +
Sbjct: 348 RGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAV 402
|
Length = 547 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 5e-04
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG--VDICSMG-LKDLRVKLSIIPQE 1299
G + +VG +GSGK+T AL RLVE GG I+ +G +D S G L+ LR + I Q+
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 1300 P 1300
P
Sbjct: 410 P 410
|
Length = 623 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 56/230 (24%), Positives = 92/230 (40%), Gaps = 59/230 (25%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV----------NLYG-SIA 661
R V+ D+ + + + G G+GK++LL A+ + +G V +LY S A
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 662 ---YVSQTSWIQSGSIRDNILYGKPMD--------------KARYDKAIKACALD----K 700
+ +T W G + + G M AR+ I+A A D
Sbjct: 82 ERRRLLRTEW---GFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERV 138
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA---- 756
+I D I SGG +QR+Q+AR + + D+P +D A
Sbjct: 139 EI------DAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLD 192
Query: 757 ---TLFNECVMAALEKKTVILVTHQ---VEFLSEVDRILVLEGGQITQSG 800
L E +A V++VTH L+ R+LV++ G++ +SG
Sbjct: 193 LLRGLVRELGLA------VVIVTHDLAVARLLA--HRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E + L R+ + I+ T + + G++G G+GK+TL+ + ++ P G I+
Sbjct: 1 LETKNLSKRFGKQT--AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
DG KDL S+I P + R NL
Sbjct: 59 FDGHP---WTRKDLHKIGSLIESPPLYENLTARENL 91
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+ L RY L ++ T G V ++G G+GK+TL S L RL G I
Sbjct: 2 LEVAGLSFRYGARR--ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQIS 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTL-FRGSVRTNL 1311
+ G D+ L +L ++ Q+PTL SVR NL
Sbjct: 60 VAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNL 95
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 7e-04
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+R + R+ + L ++ G V ++G +GSGKTTL+ + L P G+IL
Sbjct: 3 IEVRNVSKRF-GDFV-ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304
G D + +++ V + Q LFR
Sbjct: 61 FGGEDATDVPVQERNVGF--VFQHYALFR 87
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-04
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 1216 IELRQLKIRYRPNAPL---VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I L+ + Y+ P L + T +G+ +G TGSGK+T++ L L P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1273 SILIDGVDICSMG----LKDLRVKLSIIPQ--EPTLFRGSV 1307
S+ +D I S +K +R K+ ++ Q E LF +V
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETV 103
|
Length = 280 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 8e-04
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISAL--FRLVEPAGGSILIDGVDICSM 1284
+LKG+ T EG ++G GSGK+TL + E G IL DG DI +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILEL 73
|
Length = 251 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 8e-04
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS-MGLKDLR 1290
L ++ ++G V ++G G+GKTTL+ L G I+ DG DI K +R
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 1291 VKLSIIPQEPTLF-RGSVRTNLDPLGLYSDDE-----IWKVSQLTPNSRNSRI 1337
++I+P+ +F R +V NL G +++ + I V +L P RI
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRI 132
|
Length = 237 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 9e-04
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 1224 RYRPNAPLVLKGITCTFSE-------------GTRVGVVGRTGSGKTTLISALFRLVEPA 1270
R PL+L ++ + E G V VVGR+G GK+TL+ L L P+
Sbjct: 6 RLNQGTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS 65
Query: 1271 GGSIL 1275
G +L
Sbjct: 66 AGELL 70
|
Length = 257 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 9e-04
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE--PAG---GSILIDGVDICSMGLK 1287
LKGI+ E + V +G +G GK+T + R+ + PA G I IDG +I G++
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 1288 --DLRVKLSIIPQEPTLFRGSVRTNL 1311
+LR + ++ Q P F S+ N+
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENV 104
|
Length = 250 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 9e-04
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDI 1281
VL ++ + G V ++GR+G GK+TL L L P+ G++ G +
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPL 76
|
Length = 268 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 9e-04
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS---MGLKDL 1289
L G++ T G + VVG +G GK+TL L + P GG + G D+ K L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 1290 RVKLSIIPQEP 1300
R K+ I+ Q P
Sbjct: 91 RQKIQIVFQNP 101
|
Length = 327 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IEL + Y + L G++ EG ++G +G GKTTL+ + P G IL
Sbjct: 1 IELENVSKFY--GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 1276 IDGVDI 1281
+DG DI
Sbjct: 59 LDGKDI 64
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.001
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 1216 IELRQLKIRYRPNAPL-VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
+E+ L +Y + + L G++ + ++G V ++G+ GSGK+T + L E G +
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEP 1300
IDG + + + +LR K+ ++ Q P
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNP 90
|
Length = 277 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I+ R ++ RY LV+ G++ G G++G G+GKTT + L L P GSI
Sbjct: 8 IDFRNVEKRY--GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTL---FRGSVRTNLDPLGLY 1317
+ G + S + R ++ ++PQ L F +VR NL G Y
Sbjct: 66 LCGEPVPSRA-RHARQRVGVVPQFDNLDPDF--TVRENLLVFGRY 107
|
Length = 306 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI----DGVDIC 1282
VLK ++ T + G V + G +G+GK+TL+ +L+ P G IL+ VD+
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLA 77
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
SGGQ+QRI +ARA+ D D+ + D+P SA+D A + N
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLN 195
|
Length = 327 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
R+ QL + Y V + +T +G ++G G GK+TL+ L RL+ PA G +
Sbjct: 7 RLRGEQLTLGY--GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV 64
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEPT 1301
+DG I K++ ++ ++ Q T
Sbjct: 65 WLDGEHIQHYASKEVARRIGLLAQNAT 91
|
Length = 265 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 22/170 (12%)
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYGS------IAYVSQTSWI--QSG-----SIRD 676
GS GAGK++LL I G + G + Y Q ++ +SG ++R+
Sbjct: 34 GSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRE 93
Query: 677 NILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736
N LY A + + F L + GL LS GQK+++ L R +
Sbjct: 94 NCLYDIHFSPG-------AVGITELCRLFSLEHLIDY-PCGL-LSSGQKRQVALLRLWMS 144
Query: 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVD 786
A ++L D+P A+D + T+ + + V+L +HQ L++ D
Sbjct: 145 KAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKAD 194
|
Length = 200 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 48/214 (22%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE---------IPKISGTVNLYG-- 658
+P LR V+L + + + + G G+GKS+LL ++ + V+L
Sbjct: 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83
Query: 659 ----------SIAYVSQ-TSWIQSGSIRDNIL-----YGKPMDKARYDKAIKACALDKDI 702
+I YVSQ I S D + G P + AR KA L +
Sbjct: 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVAR----AKAADLLTRL 139
Query: 703 NNFDHGDLTEIGQRGLNL-----SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
N + +R +L SGG++QR+ +AR D I L D+P +++DA A
Sbjct: 140 N---------LPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAV 190
Query: 758 LFNECVMAALEKKTVIL-VTHQVEFLSEV-DRIL 789
+ E + A + ++ + H E V DR+L
Sbjct: 191 VV-ELIREAKARGAALVGIFHDEEVREAVADRLL 223
|
Length = 235 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG 1285
L+ ++ T + G V V+G +G GKTTL++ + V P+ GSI ++G I G
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG 73
|
Length = 259 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV---DIC-SMGLKDLRVKLSIIP 1297
G+ G +G+GK+TL+ + L +P GG+I+++G D + L + K+ ++
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 1298 QEPTLF-RGSVRTNL 1311
Q+ LF +VR NL
Sbjct: 82 QQYALFPHLNVRENL 96
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 1231 LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG---GSILIDG 1278
+L ++ G + ++G +GSGKTTL+ A+ VE G G IL +G
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG 71
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MG 1285
LKGI F++ ++G +G GK+T + L R+ + G++ + G +I +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 1286 LKDLRVKLSIIPQEPTLFRGSVRTNL 1311
+ LR ++ ++ Q+P F S+ N+
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENV 106
|
Length = 252 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 21/63 (33%), Positives = 41/63 (65%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
VLKG++ + G + ++G +GSGK+T + + L +P+ GSI+++G I + KD ++
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 1292 KLS 1294
K++
Sbjct: 80 KVA 82
|
Length = 257 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL---VEPA--GGSILIDGVDICS--MG 1285
+KGI F + ++G +GSGK+T + +L R+ ++ A G IL G+DI +
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 1286 LKDLRVKLSIIPQEPTLFRGSVRTNL 1311
+ ++R + ++ Q P F S+ N+
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENI 121
|
Length = 267 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 14/103 (13%)
Query: 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL 782
G K R+ LA+A++++ DI L D+P + +D +T L E V+ T+I+++H FL
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWL--EDVLNE-RNSTMIIISHDRHFL 215
Query: 783 SEV-----DRILVLEGGQIT-QSGNYQELLLAGT-AFEQLVNA 818
+ V D L+ G++ GNY E + A T A E+L+
Sbjct: 216 NSVCTHMAD----LDYGELRVYPGNYDEYMTAATQARERLLAD 254
|
Length = 530 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 38/198 (19%)
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQSG---------------- 672
G VGAG+S L+ + G + +G V L G I S I++G
Sbjct: 286 GLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345
Query: 673 -SIRDNILYGKPMDKARYDKAIKACALD--KDINNFDH--GDLT----EIGQRGLNLSGG 723
S+ DNI AR C ++ + N D L Q +NLSGG
Sbjct: 346 HSVADNINIS-----ARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGG 400
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
+Q+ L R + D + L D+P +D ++N A + V+ V+ L
Sbjct: 401 NQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSD---LP 457
Query: 784 EV----DRILVLEGGQIT 797
EV DRI+V+ G+I
Sbjct: 458 EVLGVADRIVVMREGRIA 475
|
Length = 501 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 33/221 (14%)
Query: 604 WDP-ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-KISGTVNLYG-SI 660
WD + V+ ++ + + V G VGAG++ L+ A+ G P K G V + G +
Sbjct: 266 WDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV 325
Query: 661 AYVSQTSWIQSGSI-------RDNIL----YGKPMD---------KARYDKAIKACALDK 700
+ I++G R I+ GK + K R D A + +
Sbjct: 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGS 385
Query: 701 DINNFD----HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA 756
I L IG+ LSGG +Q+ LA+ + + + + D+P VD
Sbjct: 386 AIQRLKVKTASPFLP-IGR----LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKY 440
Query: 757 TLFNECVMAALEKKTVILVTHQV-EFLSEVDRILVLEGGQI 796
++ A E +I+V+ ++ E L DR+LV+ G++
Sbjct: 441 EIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 23/210 (10%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWI 669
L VNL I+ A G G+GKS+++ + G G+V + I S+ I
Sbjct: 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80
Query: 670 QSGSIRDNILYGKPMDKARYDKAIKACAL--------DKDINNFDHGDLTEIG------- 714
+ + +++ P + + +K A ++ L +G
Sbjct: 81 KQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFE 140
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA---HTAATLFNECVMAALEKKT 771
+ LSGGQ +R+ +A + + I + D+P + +D TLF + + + T
Sbjct: 141 KNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGM---T 197
Query: 772 VILVTHQVEFLSE-VDRILVLEGGQITQSG 800
++LVTH ++ ++ D + VLE G++ SG
Sbjct: 198 IVLVTHLMDDVANYADFVYVLEKGKLVLSG 227
|
Length = 280 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------- 659
P ++ + + + V G GAGK++LL + G + SG + + G
Sbjct: 23 EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSR 82
Query: 660 -IAYVSQTSWI-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
+AY+ + S +N+ + + R K + AL + + D T + Q
Sbjct: 83 FMAYLGHLPGLKADLSTLENLHFLCGL-HGRRAKQMPGSAL-AIVGLAGYED-TLVRQ-- 137
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVT 776
LS GQK+R+ LAR + A ++L D+P++ +D TL N + A L LVT
Sbjct: 138 --LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE-GITLVNRMISAHLRGGGAALVT 193
|
Length = 214 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-- 1289
V+K I+ T G +G+VG +GSGK+T AL RL+ + G I DG + ++ + L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359
Query: 1290 -RVKLSIIPQEP 1300
R ++ ++ Q+P
Sbjct: 360 VRHRIQVVFQDP 371
|
Length = 529 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 0.002
Identities = 58/225 (25%), Positives = 86/225 (38%), Gaps = 61/225 (27%)
Query: 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNL---YGSIAYVSQ--------TSW--IQS 671
KI V G GAGKS+LL + G + G + Y+ Q T ++
Sbjct: 35 KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGI-KVGYLPQEPQLDPEKTVRENVEE 93
Query: 672 G--SIRD--------NILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR----- 716
G ++ Y +P +D ++I D D ++ +
Sbjct: 94 GVAEVKAALDRFNEIYAAYAEPDAD--FDALAAEQGELQEI--IDAADAWDLDSQLEIAM 149
Query: 717 -GL----------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
L LSGG+++R+ L R + D+ L D+P + +DA E V A
Sbjct: 150 DALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDA--------ESV-A 200
Query: 766 ALE------KKTVILVTHQVEFLSEV-DRILVLEGGQ-ITQSGNY 802
LE TV+ VTH FL V IL L+ G+ I GNY
Sbjct: 201 WLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNY 245
|
Length = 556 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 38/228 (16%)
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650
SD + +IQE L GV + +AV G G+GKS+LL A+ G I
Sbjct: 72 SDETRQIQERTI----------LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN 121
Query: 651 SGTVNLYGSIAYVSQTSWIQSGSI-RDNILYGK---------------PMDKARYDKAIK 694
+ T + + ++ ++G + +D+ILY P + +K +
Sbjct: 122 NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILV 181
Query: 695 ACALDKDINNFDHGDLTEIGQ---RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751
A ++ ++ + T IG RG+ SGG+++R+ +A + + + + D+P S +D
Sbjct: 182 AESVISELGLTKCEN-TIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
Query: 752 AHTAATLFNECVMAALEKKTVILVTHQVEFLSEV----DRILVLEGGQ 795
A A L A + KT++ HQ S V D +LVL G+
Sbjct: 239 ATAAYRLVLTLGSLAQKGKTIVTSMHQPS--SRVYQMFDSVLVLSEGR 284
|
Length = 659 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 1223 IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDI 1281
IR R A LK I+ + +G V ++G +G GKTTL+ + L G+I G DI
Sbjct: 10 IRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI 68
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 1186 RIKQF--MHIPPEPPAIVEDKRP-----PSSWPFKGR--IELRQLKIRYRPNAPLVLKGI 1236
RIK+ + VE+ +P P G+ +E + Y L+LK +
Sbjct: 283 RIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGY-DGGRLLLKDL 341
Query: 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
+ G R+ +VG G+GK+TL+ L + P G++
Sbjct: 342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
|
Length = 530 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+++ L Y P L+ I T G + V+G +G GKTTL++ + V GSI
Sbjct: 2 LQISHLYADY-GGKP-ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT 59
Query: 1276 IDGVDI 1281
+DG +
Sbjct: 60 LDGKPV 65
|
Length = 255 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL---VEPA--GGSILIDGVDICSMG-- 1285
LKG++ E + ++G +G GK+T + L R+ ++ A GS+ +DG DI G
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 1286 LKDLRVKLSIIPQEPTLFRGSVRTNL 1311
L +LR ++ ++ Q P F S+R N+
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENI 146
|
Length = 305 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+ L RY + VLKG++ + G + ++G +GSGK+T + + L +P+ GSI
Sbjct: 7 LEVEDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR 64
Query: 1276 IDGVDI 1281
++G +I
Sbjct: 65 VNGEEI 70
|
Length = 256 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE--P- 1269
+I++R L Y LK I ++ +G +G GK+TL+ R+ E P
Sbjct: 11 PSKIQVRNLNFYYGKFH--ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPE 68
Query: 1270 --AGGSILIDGVDICS--MGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
A G IL+DG +I + + LR K+ ++ Q+PT F S+ N+
Sbjct: 69 QRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNI 114
|
Length = 260 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.003
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302
G + +VG GSGKTTL AL R + P GG ++ + + D + + + ++ +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASG 61
Query: 1303 FRG 1305
Sbjct: 62 SGE 64
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT---LISALFRLVEPAGG 1272
+E + + Y + L I+ + G+ ++G GSGK+T LI+ L +
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEP 1300
I +DG+ + + + D+R K+ I+ Q P
Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNP 93
|
Length = 282 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL--VEPAG---GSILIDGVDICSMGLK 1287
+K + GT ++G +G GKTT + A+ R+ + P G IL+DG DI +
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 1288 D--LRVKLSIIPQEPTLF 1303
+R ++ ++ Q+P F
Sbjct: 80 PVAMRRRVGMVFQKPNPF 97
|
Length = 252 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.004
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG-LKDLR 1290
VLKGI T G ++G G+GK+TL+ + +V P G++ I G + K +
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85
Query: 1291 VKLSIIPQEPTLFRG-SVRTNL 1311
+ + ++PQEP LF SV+ N+
Sbjct: 86 LGIYLVPQEPLLFPNLSVKENI 107
|
Length = 510 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+++R + R N + I+ T G ++G +G GKTTL+ + + P G IL
Sbjct: 8 VDMRGVSFT-RGNRC-IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL 65
Query: 1276 IDGVDICSM---GLKDLRVKLSIIPQEPTLF 1303
DG +I +M L +R ++S++ Q LF
Sbjct: 66 FDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96
|
Length = 269 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 13/199 (6%)
Query: 626 IAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIR--DNILYGKP 683
I + G G+GKS+L I G + G V+ G ++ ++ ++ + SG + +NI + K
Sbjct: 53 IGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGL-SGQLTGIENIEF-KM 110
Query: 684 MDKARYDKAIKACALDKDINNFDHGDLTE-IGQRGLNLSGGQKQRIQLARAVYNDADIYL 742
+ K IK A+ I F +L E I Q S G + ++ + + + DI +
Sbjct: 111 LCMGFKRKEIK--AMTPKIIEFS--ELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILV 166
Query: 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801
D+ S D A ++ + KT+ V+H + + + +I +EGG++ G
Sbjct: 167 IDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGE 226
Query: 802 YQELLLAGTAFEQLVNAHR 820
++L +E +N +
Sbjct: 227 LDDVL---PKYEAFLNDFK 242
|
Length = 264 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1361 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.98 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.98 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.98 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.98 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.98 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.98 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.98 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.97 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.97 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.97 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.97 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.97 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.97 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.97 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.97 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.97 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.97 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.96 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.96 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.96 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.96 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.96 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.95 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.95 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.95 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.95 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.95 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.94 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.94 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.94 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.94 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.94 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.93 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.93 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.93 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.93 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.92 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.92 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.91 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.91 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.9 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.89 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.88 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.88 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.88 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.88 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.87 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.87 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.87 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.87 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.87 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.86 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.86 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.86 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.86 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.85 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.85 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.85 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.85 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.84 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.84 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.84 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.83 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.83 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.83 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.82 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.82 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.82 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.82 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.82 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.82 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.82 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.82 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.81 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.81 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.81 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.81 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.81 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.81 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.81 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.81 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.81 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.8 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.8 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.8 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.8 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.8 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.8 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.8 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.8 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.8 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.8 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.8 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.8 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.8 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.8 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.8 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.8 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.8 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.8 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.79 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.79 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.79 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.79 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.79 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.79 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.79 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.79 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.79 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.79 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.79 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.79 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.79 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.79 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.78 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.78 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.78 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.78 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.78 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.78 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.78 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.78 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.78 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.78 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.78 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.78 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-247 Score=2332.89 Aligned_cols=1152 Identities=43% Similarity=0.708 Sum_probs=1058.5
Q ss_pred CCCCccCCh--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHH
Q 000671 197 QTELGKAGL--LRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNV 274 (1361)
Q Consensus 197 ~~p~~~a~~--~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~~~l~~~l~~~ 274 (1361)
++|.+.++. +|+++|||++|++++|||++|+.+|+|+++++|+++.+.++|++.|+++.++. ++.|+++++++++
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~---~~~psl~~al~~~ 198 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRS---GKKPSLLRALLRT 198 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccc---cCCcHHHHHHHHH
Confidence 345555555 99999999999999999999999999999999999999999999999876432 2568899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1361)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~ 354 (1361)
||+++++.+++.++.+...|++|++|+.+++|.++++.+.+.||.|+++++++.++++++.+||+|..+++|+|+|++++
T Consensus 199 f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~ 278 (1381)
T KOG0054|consen 199 FGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALI 278 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999988777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLN 434 (1361)
Q Consensus 355 ~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l~~~l~ 434 (1361)
++||+|+|++++.+++++++|+|+|+|++|++|+++++.++|.+|++|+|+++++++||+++|+++++|++++++++|+|
T Consensus 279 ~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 279 SAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTII 514 (1361)
Q Consensus 435 ~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v 514 (1361)
.+++++++++|++.|+.+|+|+++|||+|+|||+|||||||++|.++|+++|++|++++||..+..+++.++++++|+++
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCc
Q 000671 515 SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1361)
Q Consensus 515 ~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~ 594 (1361)
++++|++|++..++.+||++||+++++||+|+.|+.++|+.++.++|++||++|+++||..+|.+++..++.+..+.+.+
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 518 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENA 518 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCce
Confidence 99999999953348999999999999999999999999999999999999999999999999998766654444556678
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcCCCCCH
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI 674 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i~~~ti 674 (1361)
|+++|++|+|+++...+.|+||||+|++|+++||||++||||||||++|+||+++.+|+|.++|.+|||||+|||+|+||
T Consensus 519 i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTv 598 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTV 598 (1381)
T ss_pred EEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcH
Confidence 99999999999865567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHH
Q 000671 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1361)
Q Consensus 675 ~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~ 754 (1361)
||||+||.|||++||++|+++|+|++|++.||+||+|+|||||.||||||||||+||||+|+|+||||||||+||||+|+
T Consensus 599 reNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahv 678 (1381)
T KOG0054|consen 599 RENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHV 678 (1381)
T ss_pred HHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCC
Q 000671 755 AATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQ 834 (1361)
Q Consensus 755 ~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1361)
++|||++|+++.+++||+|+|||+++++++||+|++|+||+|.++|+|+|+++.+..|.++..+.........+.+ ...
T Consensus 679 g~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~~-~~~ 757 (1381)
T KOG0054|consen 679 GKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEEASEK-DLE 757 (1381)
T ss_pred hHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhccccccc-ccc
Confidence 9999999999999999999999999999999999999999999999999999988888887433221111100000 000
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCccc-cccccccCccchHHHHhhCcccHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 000671 835 GGAEKVEKGRTARPEEPNGIYPRKESSEG-EISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFV 913 (1361)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~l~~~~~~~~~ 913 (1361)
. . ..+ ...+.......+...+. ....+...++.++|+++.|.|+|++|+.|+++.+|+..+++.+++.+..+
T Consensus 758 ~-~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~ 830 (1381)
T KOG0054|consen 758 S-G-ESS-----RESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQ 830 (1381)
T ss_pred c-c-ccc-----cchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 0 0 000 00000000000000000 00111124567788899999999999999998778877777788888899
Q ss_pred HHHHHHHHHHHHHhcCCC------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 000671 914 GLQAAATYWLAYAIQIPK------ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFD 987 (1361)
Q Consensus 914 ~~~~~~~~wl~~~~~~~~------~~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd 987 (1361)
++..+.+||+++|++... ....+|+++|+++++++.++.+++++.+...++++|++||++|+++++|+||+|||
T Consensus 831 ~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd 910 (1381)
T KOG0054|consen 831 VLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD 910 (1381)
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC
Confidence 999999999999997642 34568999999999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000671 988 STPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRING 1067 (1361)
Q Consensus 988 ~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~ 1067 (1361)
+||+|||+||||+|++.+|..+|..+..++.++++++++++++++++|+++++++|+.++++++++||++++||+||+++
T Consensus 911 tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLes 990 (1381)
T KOG0054|consen 911 TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLES 990 (1381)
T ss_pred CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q 000671 1068 TTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGY 1147 (1361)
Q Consensus 1068 ~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~~vl~~~g~ 1147 (1361)
.+|||+++||+||++|+.|||||++|++|.+++.+++|.+.+++|....++||+++|+|++++++++++++++++...+.
T Consensus 991 itRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~ 1070 (1381)
T KOG0054|consen 991 ITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL 1070 (1381)
T ss_pred cccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887766555
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCC
Q 000671 1148 VAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRP 1227 (1361)
Q Consensus 1148 is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~ 1227 (1361)
.+||.+|++++|++++++.++|++|+.+++|++|+|||||.||.++|+|+|+..+..+||++||.+|+|+|+|+++||||
T Consensus 1071 ~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp 1150 (1381)
T KOG0054|consen 1071 ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP 1150 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC
Confidence 88999999999999999999999999999999999999999999999997777666669999999999999999999999
Q ss_pred CCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccch
Q 000671 1228 NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSV 1307 (1361)
Q Consensus 1228 ~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTI 1307 (1361)
++|+|||||||+|+||||||||||||||||||+++|||+.||.+|+|.|||+||++++|||||++++||||||+||+||+
T Consensus 1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTv 1230 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTV 1230 (1381)
T ss_pred CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1308 RTNLDPLGLYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1308 R~NLdP~~~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
|+|||||++|+|+|||+|||+|+-.. .---++|++.-|+|+|.|+||||||.
T Consensus 1231 R~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlC 1285 (1381)
T KOG0054|consen 1231 RFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLC 1285 (1381)
T ss_pred ccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHH
Confidence 99999999999999999999996222 11224999999999999999999984
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-190 Score=1917.17 Aligned_cols=1320 Identities=29% Similarity=0.477 Sum_probs=1077.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCcccc-hhHHHHHHHHHHHHHHHHHH---HHHHHhhhccCCc-
Q 000671 22 GSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKN-HNYGRIRR-ECVSIVVSACCAVVGIAYLG---YCLWNLIAKNDSS- 95 (1361)
Q Consensus 22 ~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~- 95 (1361)
.||||++++++|+|++|+|+++|.+++. +++. +..++.++ .+.+....++..+.....++ .+......+....
T Consensus 29 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (1622)
T PLN03130 29 YTPCATDSLVINISHLVLLGLCLYRIWL-IKKDHKVQRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISVLNLDGQTSL 107 (1622)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHH-hccccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 3999999999999999999999988864 3331 22222222 22222222221111111111 1111111111111
Q ss_pred ch--hHHHHHHHHHHHHHHHHHH---HHh--ccchhHHHHHHHHHH---HHHHHHHHHHHHhhhcccccccchhhhHHHH
Q 000671 96 MS--WLVSTVRGLIWVSLAISLL---VKR--SKWIRMLITLWWMSF---SLLVLALNIEILARTYTINVVYILPLPVNLL 165 (1361)
Q Consensus 96 ~~--~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1361)
.+ ........++|+.+.+.+. .++ .+...+.+++||++. +++.............. ...++..+.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 186 (1622)
T PLN03130 108 PPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLVLSVKEYYSSFV-LYLYISEVAAQVL 186 (1622)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHHHHHHHHHhccc-cceehhHHHHHHH
Confidence 11 1112223455543322222 112 233346678899887 33322222221221110 1224444444443
Q ss_pred HHHHH-hh-cccCCCCCCC------CCCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCcc
Q 000671 166 LLFSA-FR-NFSHFTSPNR------EDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPE 237 (1361)
Q Consensus 166 ~~~~~-~~-~~~~~~~~~~------~~~~~~~p~~~~~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~ 237 (1361)
+.+.. +. ...+...+.. ..+..++|...+.+++||++||++||++|||++|++++|||++|+.+|||+++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~ 266 (1622)
T PLN03130 187 FGILLLVYFPNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTW 266 (1622)
T ss_pred HHHHHHHHHhcCCCCcccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChh
Confidence 32222 11 1111111110 1123455555667889999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHH
Q 000671 238 DEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEG 317 (1361)
Q Consensus 238 ~~~~~~~~~f~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g 317 (1361)
|+++.+.++|++.|+++.+ +++++++++++++|++.++..++++++.+++.+++|++++.+++++.+++ ..+.|
T Consensus 267 ~~~~~~~~~~~~~w~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~-~~~~~ 340 (1622)
T PLN03130 267 DQTETLYRSFQKCWDEELK-----KPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGE-PAWIG 340 (1622)
T ss_pred hhHHHHHHHHHHHHHHHhc-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cchHH
Confidence 9999999999999987642 13478999999999999999999999999999999999999999986543 23567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHH
Q 000671 318 LSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHL 397 (1361)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~ 397 (1361)
+.++++++++.++.+++.++|++...++++++|+++...+|+|.++++....++.++|+++|+|++|++++.+++.++|.
T Consensus 341 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~ 420 (1622)
T PLN03130 341 YIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHT 420 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777888888899999999999999999999999998888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH
Q 000671 398 TWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK 477 (1361)
Q Consensus 398 ~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~ 477 (1361)
+|.+|+++++++++||..+|+++++|++++++++|++..+++++++.+++.|+.+|+|++.++|+++|||+||+|+||+.
T Consensus 421 l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~ 500 (1622)
T PLN03130 421 LWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENS 500 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 478 FKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALS 557 (1361)
Q Consensus 478 f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~ 557 (1361)
|.+++++.|++|++..++..+..++..+++...|.++++++|++|.+.+ +.+|++.+|+++++++.++.|+..+|..+.
T Consensus 501 ~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~-g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~ 579 (1622)
T PLN03130 501 FQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLG-GDLTPARAFTSLSLFAVLRFPLFMLPNLIT 579 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888777777888888888898888776 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHH
Q 000671 558 IMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637 (1361)
Q Consensus 558 ~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKS 637 (1361)
.+.++++|++||++||..+|..+... .+.......|+++|++|+|++++++++|+|+||+|++||+++|+||+|||||
T Consensus 580 ~~~~a~~s~~RI~~~L~~~e~~~~~~--~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKS 657 (1622)
T PLN03130 580 QAVNANVSLKRLEELLLAEERVLLPN--PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKT 657 (1622)
T ss_pred HHHHHHHHHHHHHHHHcCcccccccC--CcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHH
Confidence 99999999999999998776532111 1111123479999999999865456799999999999999999999999999
Q ss_pred HHHHHHhCCccCCC-cEEEEcCeEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCC
Q 000671 638 SLLYAILGEIPKIS-GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1361)
Q Consensus 638 TLl~~llg~~~~~~-G~v~~~g~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 716 (1361)
||+++|+|+++|.+ |+|.++|+||||+|+||++++||||||+||.++++++|++++++|+|.+|++.+|+||+|+|||+
T Consensus 658 TLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~ 737 (1622)
T PLN03130 658 SLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGER 737 (1622)
T ss_pred HHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCC
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeE
Q 000671 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1361)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1361)
|.+|||||||||+||||+|++||||||||||||||++++++++++++.+.+++||+|+|||+++.++.||+|++|++|+|
T Consensus 738 G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 738 GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMI 817 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999999887889999999999999999999999999999
Q ss_pred EEecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCccccccccccCccchH
Q 000671 797 TQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTED 876 (1361)
Q Consensus 797 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 876 (1361)
+++|++++++++++.|.++...+....+..+ . ......++.+. .. ..+......+ +.....+...+....+.++
T Consensus 818 ~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~-~--~~~~~~~~~~~-~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 891 (1622)
T PLN03130 818 KEEGTYEELSNNGPLFQKLMENAGKMEEYVE-E--NGEEEDDQTSS-KP-VANGNANNLK-KDSSSKKKSKEGKSVLIKQ 891 (1622)
T ss_pred EEeCCHHHHHhcchhHHHHHHhccccccccc-c--ccccccccccc-cc-cccccccccc-ccccccccccccchhhhhH
Confidence 9999999999888888887754321110000 0 00000000000 00 0000000000 0000000000011234567
Q ss_pred HHHhhCcccHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHHHHHHHH
Q 000671 877 EEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK---ITSGILIGVYAGVSTASAVFVY 953 (1361)
Q Consensus 877 e~~~~g~v~~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~~---~~~~~~l~iy~~l~~~~~i~~~ 953 (1361)
|+++.|.++|++|+.|+++.++.+.+++++++.+...++..+.++|++.|.+... .....|+++|++++++..++.+
T Consensus 892 e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~ 971 (1622)
T PLN03130 892 EERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTL 971 (1622)
T ss_pred HHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999998666555555555666667778889999999986421 2245678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFV 1033 (1361)
Q Consensus 954 ~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~ 1033 (1361)
++.++....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++++++++++
T Consensus 972 ~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~ 1051 (1622)
T PLN03130 972 LNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIV 1051 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHH
Q 000671 1034 TWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFH 1113 (1361)
Q Consensus 1034 ~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~ 1113 (1361)
+|..+++++|+.+++++++++|.+++|+++|+++++++|+++|++|+++|++|||||+++++|.+++.+..|.+.+..+.
T Consensus 1052 ~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~ 1131 (1622)
T PLN03130 1052 STISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLV 1131 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777788888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000671 1114 TNGVMEWLILRVEALQNLTLFTAALFLVLIPRGY-----VAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIK 1188 (1361)
Q Consensus 1114 ~~~~~~wl~~rl~~l~~l~~~~~~~~~vl~~~g~-----is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~ 1188 (1361)
....++|++.++++++.+++++.+.+.+.. .+. ..++.+|++++|++.++.++.++++.++++|+.++|+||+.
T Consensus 1132 ~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~-~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~ 1210 (1622)
T PLN03130 1132 NMSSNRWLAIRLETLGGLMIWLTASFAVMQ-NGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 1210 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877665555443322 221 22688999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC
Q 000671 1189 QFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1361)
Q Consensus 1189 e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~e 1268 (1361)
+|++.|+|++...++..+++.||.+|.|+|+||+|+|+++.++|||||||+|+||||||||||||||||||+++|+|+||
T Consensus 1211 e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~ 1290 (1622)
T PLN03130 1211 TYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE 1290 (1622)
T ss_pred HHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 99999988765434445667899999999999999999887789999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCC---CCCCcccccCCch
Q 000671 1269 PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNS---RNSRIDIDFPTFN 1345 (1361)
Q Consensus 1269 p~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~---~~~~~~~~~~~~~ 1345 (1361)
|++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|||||+||++|+-. .+-.-|+|++-++
T Consensus 1291 p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge 1370 (1622)
T PLN03130 1291 LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSE 1370 (1622)
T ss_pred CCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999632 1222478999999
Q ss_pred hhhhhcccccccee
Q 000671 1346 KFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1346 ~~~~~~~~~~~~~~ 1359 (1361)
+|.|+|.|||||+.
T Consensus 1371 ~G~nLSgGQrQrla 1384 (1622)
T PLN03130 1371 AGENFSVGQRQLLS 1384 (1622)
T ss_pred CCCCCCHHHHHHHH
Confidence 99999999999974
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-185 Score=1874.73 Aligned_cols=1147 Identities=31% Similarity=0.529 Sum_probs=1001.7
Q ss_pred ccCCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHH
Q 000671 194 EKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITN 273 (1361)
Q Consensus 194 ~~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~~~l~~~l~~ 273 (1361)
+..++||+++|++||++|||++|++++|||++|+.+|||+|+++|+++.+.++|++.|+++.+ .+++++++++++
T Consensus 223 ~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~-----~~~~~l~~~l~~ 297 (1495)
T PLN03232 223 GENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESR-----RPKPWLLRALNN 297 (1495)
T ss_pred cCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhhc-----cCCchHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999987542 135789999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 274 VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSAL 353 (1361)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l 353 (1361)
+|++.++..++++++.+++.+++|++++.+++++++++ +.+.|+.++++++++.++.+++.++|++...+++.++|+.+
T Consensus 298 ~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l 376 (1495)
T PLN03232 298 SLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGD-PAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTL 376 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986543 23457888888888888888888899999999999999999
Q ss_pred HHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 354 MVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLL 433 (1361)
Q Consensus 354 ~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l~~~l 433 (1361)
...+|+|.++++....++.++|+++|+|++|++++.++..++|.+|..|++++++++++|+.+|+++++|++++++++|+
T Consensus 377 ~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl 456 (1495)
T PLN03232 377 VAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPL 456 (1495)
T ss_pred HHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999998888889999999999999999999899999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 434 NVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTI 513 (1361)
Q Consensus 434 ~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~ 513 (1361)
+..+++++++.+++.++.+|+|.+.++|+++|||+||+|+||+.+.+++++.|++|++..++.....++..+++...|.+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1495)
T PLN03232 457 QTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVV 536 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887777777777777887
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCC
Q 000671 514 ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDR 593 (1361)
Q Consensus 514 v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~ 593 (1361)
+++++|++|.+.+ +++|++.+|+++++++.+..|+..+|..+..+.++++|++||++||+.+|..++.. .+......
T Consensus 537 ~~~~~fg~~~v~~-~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~~~~~~ 613 (1495)
T PLN03232 537 VTLVSFGVFVLLG-GDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN--PPLQPGAP 613 (1495)
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc--CCcCCCCC
Confidence 7778888887775 78999999999999999999999999999999999999999999998765321110 11112234
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcE-EEEcCeEEEEecCCcCCCC
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT-VNLYGSIAYVSQTSWIQSG 672 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~-v~~~g~iayv~Q~~~i~~~ 672 (1361)
.|+++|++|+|++++++++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|. +.++++||||+|+||++++
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~g 693 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNA 693 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccc
Confidence 799999999998654568999999999999999999999999999999999999999975 5678999999999999999
Q ss_pred CHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q 000671 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1361)
Q Consensus 673 ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~ 752 (1361)
||||||+||.++++++|++++++|+|.+|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||+
T Consensus 694 TIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~ 773 (1495)
T PLN03232 694 TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDA 773 (1495)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHHHHHhhhhccCCCCCCCC
Q 000671 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNA 832 (1361)
Q Consensus 753 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1361)
+++++++++++.+.+++||+|+|||+++.++.||+|++|++|+|+++|+++|++++++.|.++.+.+.......+ . .
T Consensus 774 ~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~-~-~- 850 (1495)
T PLN03232 774 HVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQE-V-N- 850 (1495)
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhccccccccc-c-c-
Confidence 999999999988777899999999999999999999999999999999999999888888887754332110000 0 0
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCccccccccccCccchHHHHhhCcccHHHHHHHHHhccchhHHHHHHHHHHHH
Q 000671 833 GQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGF 912 (1361)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~l~~~~~~~~ 912 (1361)
.+.+...... +...... ..+.....+...+....+.++|+++.|.++|++|++|+++.++++.+.+++++.+..
T Consensus 851 --~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~ 924 (1495)
T PLN03232 851 --TNDENILKLG---PTVTIDV-SERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTT 924 (1495)
T ss_pred --cccccccccc---ccccccc-cccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 0000000000 0000000 000000000000011234677888999999999999999877655555555566666
Q ss_pred HHHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 000671 913 VGLQAAATYWLAYAIQIPK---ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDST 989 (1361)
Q Consensus 913 ~~~~~~~~~wl~~~~~~~~---~~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~t 989 (1361)
.++..+.++|++.|.+... ....+|+++|++++++..++.+++.++....+.++++++|++++++++++|++|||++
T Consensus 925 ~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~ 1004 (1495)
T PLN03232 925 EVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTN 1004 (1495)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcC
Confidence 7777889999999986431 2346789999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000671 990 PVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTT 1069 (1361)
Q Consensus 990 p~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~ 1069 (1361)
|+|+|+|||++|++.+|..++..+..++..++.+++++++++++++..+++++|+.+++++++.+|.+++|+++|.++.+
T Consensus 1005 ~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 1084 (1495)
T PLN03232 1005 PTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVT 1084 (1495)
T ss_pred CchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998888888888888877777777887777888899999999999999999
Q ss_pred cchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc-
Q 000671 1070 KAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYV- 1148 (1361)
Q Consensus 1070 ~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~~vl~~~g~i- 1148 (1361)
++|+++|++|+++|++|||+|+++++|.+++.+..|.+.+..+.....++|+..++++++.+++++.+.+.+. ..+.+
T Consensus 1085 ~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~-~~~~~~ 1163 (1495)
T PLN03232 1085 RSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVL-RNGNAE 1163 (1495)
T ss_pred cChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccccc
Confidence 9999999999999999999999999999999999999999999888899999999988876655444433332 22322
Q ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEE
Q 000671 1149 ----APGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIR 1224 (1361)
Q Consensus 1149 ----s~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~ 1224 (1361)
.++.+|++++|+.+++.+++++++.++++|+.++|+||+.+|++.|+|++...++..+++.||.+|+|+|+||+|+
T Consensus 1164 ~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~ 1243 (1495)
T PLN03232 1164 NQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLR 1243 (1495)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEE
Confidence 2567889999999999999999999999999999999999999998886543333345667999999999999999
Q ss_pred eCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccc
Q 000671 1225 YRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304 (1361)
Q Consensus 1225 Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~ 1304 (1361)
|+++.++||||+||+|+||||||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++|||||+||+
T Consensus 1244 Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~ 1323 (1495)
T PLN03232 1244 YRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFS 1323 (1495)
T ss_pred ECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeC
Confidence 99887789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCCCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1305 GSVRTNLDPLGLYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1305 GTIR~NLdP~~~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
||||+||||+++++|||||+||++|+-.. +---|+|++-+++|+|+|.|||||+.
T Consensus 1324 gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrla 1381 (1495)
T PLN03232 1324 GTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLS 1381 (1495)
T ss_pred ccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHH
Confidence 99999999999999999999999996321 22237899999999999999999974
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-184 Score=1868.20 Aligned_cols=1331 Identities=30% Similarity=0.502 Sum_probs=1075.8
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 000671 18 EFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRREC---VSIVVSACCAVVGIAYLGYCLWNLIAKNDS 94 (1361)
Q Consensus 18 ~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1361)
.||| ||||+++++.|+|+.++++++|+.++. +++++ ....++++ .+.....+...+.++.+.+.+|........
T Consensus 20 ~~d~-t~~f~~~~~~~~p~~~~~~~~~~~~~~-l~~~~-~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1522)
T TIGR00957 20 NPDF-TKCFQNTVLAWVPCFYLWVCFPCYFLY-LSRHD-RGYIQMTHLNKTKTALGFLLWIVCWADLFYSFWERSHGRAP 96 (1522)
T ss_pred CCCC-CccHHHHHHHHHHHHHHHHHHHHHHHH-hhccC-CCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 3678 999999999999999999999987763 33222 12122222 222222222222222233334432111111
Q ss_pred -cchhHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHH-HHHHHHhhhcc---cccccchhhhHHHHHH
Q 000671 95 -SMSWLVSTVRGLIWVSLAISLLVKRS--KWIRMLITLWWMSFSLLVLA-LNIEILARTYT---INVVYILPLPVNLLLL 167 (1361)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 167 (1361)
.......++..++|+...+....++. ..++..+..||++..++... .+......... ...+....+...+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1522)
T TIGR00957 97 APVFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFALV 176 (1522)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccccccceehhhHHHHHHHH
Confidence 11123334455555433222222222 22345677888876654322 11111111100 0111111112221111
Q ss_pred HHHhhcccCCCCCCCCCCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHH
Q 000671 168 FSAFRNFSHFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKF 247 (1361)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f 247 (1361)
+..+..... . +.....++...+.+++||++||++||++|||++|++++|||++|+.+|||+++++++++.++++|
T Consensus 177 ~~~~~~~~~--~---~~~~~~~~~~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~ 251 (1522)
T TIGR00957 177 LSQLVLSCF--S---DKSPLFSETNHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVL 251 (1522)
T ss_pred HHHHHHHhh--c---CCCCccccccccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHH
Confidence 111111000 0 00000011011234689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc------------------------------------CCCCCchHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000671 248 AYAWDSLVRENN------------------------------------SNNNGNLVRKVITNVYLKENIFIAICALLRTI 291 (1361)
Q Consensus 248 ~~~w~~~~~~~~------------------------------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 291 (1361)
++.|+++.++.. ++.++++++++++++||+.++..++++++.++
T Consensus 252 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~ 331 (1522)
T TIGR00957 252 VENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDL 331 (1522)
T ss_pred HHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999997642110 01234679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q 000671 292 AVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKK 371 (1361)
Q Consensus 292 ~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~~~Iy~K~L~ls~~~~~~ 371 (1361)
+.+++|++++.+++|+.+++.+.+.|+.++++++++.++.+++.++|+|...++|+++|++|.+.||+|+|+++...+++
T Consensus 332 ~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~ 411 (1522)
T TIGR00957 332 MMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKS 411 (1522)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCC
Confidence 99999999999999987654455678999999999999999999999999999999999999999999999999998889
Q ss_pred CCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 372 HSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIA 451 (1361)
Q Consensus 372 ~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l~~~l~~~~~~~~~~~q~~~m~~ 451 (1361)
.++|+++|+|++|++++.++..++|.+|..|+++++++++||..+|+++++|++++++++|++..+++.++++++++|+.
T Consensus 412 ~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (1522)
T TIGR00957 412 STVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKS 491 (1522)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC
Q 000671 452 QDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTG-SAPL 530 (1361)
Q Consensus 452 ~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~-~~~L 530 (1361)
+|+|++.++|+++|||+||+|+||+.|.+++++.|++|++.+++..+...+..+.++..|.++.+++|++|.+.. ++.+
T Consensus 492 ~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l 571 (1522)
T TIGR00957 492 KDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNIL 571 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999999999999999999999988888777777777889888888888887764 4689
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccc-cCCCCcEEEEeeEEEeCCCCC
Q 000671 531 NASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL-QKSDRSVKIQEGNFSWDPELA 609 (1361)
Q Consensus 531 t~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~-~~~~~~i~~~~~~f~~~~~~~ 609 (1361)
+++.+|+++++++.++.|+..+|..+..+.++++|++||++||+.+|.++...+.... +.....|+++|++|+|+++ +
T Consensus 572 ~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~ 650 (1522)
T TIGR00957 572 DAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD-L 650 (1522)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC-C
Confidence 9999999999999999999999999999999999999999999877654322111111 1122479999999999753 3
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcCCCCCHHHHhhcCCCCCHHHH
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARY 689 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~ 689 (1361)
+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+||||||+||++++||+|||.||.++++++|
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 730 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYY 730 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHH--Hhc
Q 000671 690 DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM--AAL 767 (1361)
Q Consensus 690 ~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~--~~~ 767 (1361)
++++++|++.+|++.+|+||+|.+|++|.+|||||||||+||||+|++||++||||||||||+++++++++.+.. +..
T Consensus 731 ~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~ 810 (1522)
T TIGR00957 731 QQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL 810 (1522)
T ss_pred HHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999874 456
Q ss_pred CCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHHHHHhhhhccCCCCCCC--CC--CCCccc--cc
Q 000671 768 EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDN--AG--QGGAEK--VE 841 (1361)
Q Consensus 768 ~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~--~~ 841 (1361)
+++|+|+|||+++.++.||+|++|++|+++++|+++++.++++.+.++...+....+.....+. .. ..+.+. .+
T Consensus 811 ~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1522)
T TIGR00957 811 KNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIE 890 (1522)
T ss_pred cCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhcccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999999999998877787776543211110000000 00 000000 00
Q ss_pred c--------ccCCCC----CCCCCCCC-CCCCcccc----ccccccCccchHHHHhhCcccHHHHHHHHHhccchhHHHH
Q 000671 842 K--------GRTARP----EEPNGIYP-RKESSEGE----ISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCL 904 (1361)
Q Consensus 842 ~--------~~~~~~----~~~~~~~~-~~~~~~~~----~~~~~~~~l~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~l 904 (1361)
. ...... ........ ....+..+ ...+...++.++|+++.|.|++++|+.|+++.+ +..+++
T Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g-~~~~~~ 969 (1522)
T TIGR00957 891 NGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIG-LFITFL 969 (1522)
T ss_pred ccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcC-HHHHHH
Confidence 0 000000 00000000 00000000 000011234567788899999999999999754 444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000671 905 GVLAQSGFVGLQAAATYWLAYAIQIPK-----ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIF 979 (1361)
Q Consensus 905 ~~~~~~~~~~~~~~~~~wl~~~~~~~~-----~~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il 979 (1361)
.+++.++..++..+.++|+++|.+... ....+++++|++++++..++.+++.++....+.++++++|++++++++
T Consensus 970 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 1049 (1522)
T TIGR00957 970 SIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKL 1049 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667778899999999986421 123467789999999999999998899999999999999999999999
Q ss_pred cCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 980 KAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATA 1059 (1361)
Q Consensus 980 ~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~s 1059 (1361)
++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|.++++++|+++++++++++|.+++
T Consensus 1050 ~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (1522)
T TIGR00957 1050 RSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASS 1129 (1522)
T ss_pred cCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998899888888888888889999999999
Q ss_pred HHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 1060 RELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF 1139 (1361)
Q Consensus 1060 r~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~ 1139 (1361)
|+++|++.++++|+++|++|+++|++|||||++|++|.+++.+..|.+.++.+.....++|+..++++++.+++++++.+
T Consensus 1130 r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1209 (1522)
T TIGR00957 1130 RQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALF 1209 (1522)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887655544443
Q ss_pred hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEE
Q 000671 1140 LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELR 1219 (1361)
Q Consensus 1140 ~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~ 1219 (1361)
.+ ...+.+++|.+|++++|+.++..++.++++.++++|+.++|+||+.+|++.|+|++...++..+++.||.+|+|+|+
T Consensus 1210 ~v-~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~ 1288 (1522)
T TIGR00957 1210 AV-ISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFR 1288 (1522)
T ss_pred HH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEE
Confidence 33 23678999999999999999999999999999999999999999999999888865333344566789999999999
Q ss_pred EEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCc
Q 000671 1220 QLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQE 1299 (1361)
Q Consensus 1220 nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQd 1299 (1361)
||+|+|+++.++|||||||+|+||||||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++||||
T Consensus 1289 nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQd 1368 (1522)
T TIGR00957 1289 NYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQD 1368 (1522)
T ss_pred EEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCC
Confidence 99999988777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCCCCCCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1300 PTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1300 p~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
|+||+||||+||||+++++|||||+||++|+-.. +---|+|++-+++|.|+|.|||||+.
T Consensus 1369 p~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~ 1431 (1522)
T TIGR00957 1369 PVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVC 1431 (1522)
T ss_pred CcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHH
Confidence 9999999999999999999999999999996321 11136899999999999999999974
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-174 Score=1757.19 Aligned_cols=1150 Identities=27% Similarity=0.442 Sum_probs=988.5
Q ss_pred CCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhh
Q 000671 197 QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYL 276 (1361)
Q Consensus 197 ~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1361)
.+||++||++||++|||++|++++|||++|+.+|||+|+++++++.+.++|++.|+++.+++ .+.++++++++++|+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~---~~~~~L~~~l~~~~~ 79 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASA---KKNPKLLNALRRCFF 79 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhcc---CCCChHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999998764321 245789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 277 KENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1361)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~-~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~~ 355 (1361)
+.++..++++++.+++.+++|++++.+++|++..+. ..+.|+.++++++++.++.+++.++++|...++++++|++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~ 159 (1490)
T TIGR01271 80 WRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFS 159 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999853322 2356888999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNV 435 (1361)
Q Consensus 356 ~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l~~~l~~ 435 (1361)
+||+|+|+++..+.++.++|+++|+|++|++++.+++.++|.+|..|+++++++++||.++|+++++|++++++++|++.
T Consensus 160 ~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~ 239 (1490)
T TIGR01271 160 LIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQA 239 (1490)
T ss_pred HHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 436 PFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIIS 515 (1361)
Q Consensus 436 ~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~ 515 (1361)
++++.+.++++++|+.+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++.+++..+...+..++++..|.++.
T Consensus 240 ~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1490)
T TIGR01271 240 CLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVV 319 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988887777788888899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCc
Q 000671 516 SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVR-MIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1361)
Q Consensus 516 ~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~-~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~ 594 (1361)
+++|++|.+.+ .++++.+||++++|++++.|+. .+|..+..+.++.+|++||++||..+|.++... ......
T Consensus 320 ~~~f~~y~~~~--~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~-----~~~~~~ 392 (1490)
T TIGR01271 320 FLSVVPYALIK--GIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY-----NLTTTE 392 (1490)
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc-----cCCCCc
Confidence 99999888774 3789999999999999999985 799999999999999999999998877643111 112346
Q ss_pred EEEEeeEEEeCCCC-------------------------------CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHH
Q 000671 595 VKIQEGNFSWDPEL-------------------------------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI 643 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-------------------------------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l 643 (1361)
|+++|++|+|+... .+++|+|+||+|++||+++|+|||||||||||++|
T Consensus 393 i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l 472 (1490)
T TIGR01271 393 VEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMI 472 (1490)
T ss_pred eEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999996310 13689999999999999999999999999999999
Q ss_pred hCCccCCCcEEEEcCeEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 644 LGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 644 lg~~~~~~G~v~~~g~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
+|+++|++|+|.++|+||||+|+||++++||+|||+||.++++++|++++++|+|.+|++.+|+||+|++|++|.+||||
T Consensus 473 ~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgG 552 (1490)
T TIGR01271 473 MGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGG 552 (1490)
T ss_pred hCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChH
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~ 803 (1361)
|||||+||||+|++||+|||||||||||+++++++++.|+....+++|+|+|||+++.++.||+|++|++|++++.|+++
T Consensus 553 qkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~ 632 (1490)
T TIGR01271 553 QRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFS 632 (1490)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999998887777899999999999999999999999999999999999
Q ss_pred HHHhcCchHHHHHHHhhh--h------------------ccCCC-----CCCC-----C-CCCCcc--------------
Q 000671 804 ELLLAGTAFEQLVNAHRD--A------------------ITGLG-----PLDN-----A-GQGGAE-------------- 838 (1361)
Q Consensus 804 ~l~~~~~~~~~~~~~~~~--~------------------~~~~~-----~~~~-----~-~~~~~~-------------- 838 (1361)
++...+..+.+....... . ..... +.+. + .....+
T Consensus 633 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1490)
T TIGR01271 633 ELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASA 712 (1490)
T ss_pred HHHhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 998766555554421100 0 00000 0000 0 000000
Q ss_pred ----------------c-cc-c-ccC---------------CCCCCCC---------CCC------CCC-------C-C-
Q 000671 839 ----------------K-VE-K-GRT---------------ARPEEPN---------GIY------PRK-------E-S- 860 (1361)
Q Consensus 839 ----------------~-~~-~-~~~---------------~~~~~~~---------~~~------~~~-------~-~- 860 (1361)
. .+ . ... ..++... ... ... . .
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1490)
T TIGR01271 713 RKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQL 792 (1490)
T ss_pred cccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence 0 00 0 000 0000000 000 000 0 0
Q ss_pred -----------------cc--------ccc-----cc-----cccCccchHHHHhhCcccHHHHHHHHHhccchhHHHHH
Q 000671 861 -----------------SE--------GEI-----SV-----KGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLG 905 (1361)
Q Consensus 861 -----------------~~--------~~~-----~~-----~~~~~l~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~l~ 905 (1361)
.+ .+. .. +....+.++|+++.|.++|++|+.|+++.+++..++++
T Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~ 872 (1490)
T TIGR01271 793 QTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIF 872 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHH
Confidence 00 000 00 00012355678889999999999999977665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---------CC-------------chhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 906 VLAQSGFVGLQAAATYWLAYAIQIP---------KI-------------TSGIL-IGVYAGVSTASAVFVYFRSFFAAHL 962 (1361)
Q Consensus 906 ~~~~~~~~~~~~~~~~wl~~~~~~~---------~~-------------~~~~~-l~iy~~l~~~~~i~~~~~~~~~~~~ 962 (1361)
+++.++.+++..+.++|+..|.... +. ...+| +++|++++++..++.+++.+++.+.
T Consensus 873 ~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1490)
T TIGR01271 873 CLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHT 952 (1490)
T ss_pred HHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667788889999998886411 00 11223 4566666666677788899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000671 963 GLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAI 1042 (1361)
Q Consensus 963 ~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~i 1042 (1361)
+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|.++++++
T Consensus 953 ~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~ 1032 (1490)
T TIGR01271 953 LLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAI 1032 (1490)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000671 1043 FAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLI 1122 (1361)
Q Consensus 1043 p~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~ 1122 (1361)
|+++++++++++|.+++|+++|++..+++|+++|+.|+++|+.|||||+++++|.+++.+..|.+.+.++.....++|+.
T Consensus 1033 ~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ 1112 (1490)
T TIGR01271 1033 PVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQ 1112 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCC
Q 000671 1123 LRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202 (1361)
Q Consensus 1123 ~rl~~l~~l~~~~~~~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~ 1202 (1361)
.++++++.+.++.++++++. ...+++|.+|++++|++++..++.++++.++++|+.++|+||+.+|++.|+|++...+
T Consensus 1113 ~~~~~i~~~~~~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~ 1190 (1490)
T TIGR01271 1113 MRIDIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSG 1190 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 99998876654443333222 2346788999999999999999999999999999999999999999998887543211
Q ss_pred --------------CCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC
Q 000671 1203 --------------DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1361)
Q Consensus 1203 --------------~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~e 1268 (1361)
...+|+.||.+|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++
T Consensus 1191 ~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~ 1270 (1490)
T TIGR01271 1191 GGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS 1270 (1490)
T ss_pred cccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 113455799999999999999999887889999999999999999999999999999999999998
Q ss_pred CCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCC---CCCcccccCCch
Q 000671 1269 PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSR---NSRIDIDFPTFN 1345 (1361)
Q Consensus 1269 p~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~ 1345 (1361)
.+|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|||+||++++-.. +..=|+|++.++
T Consensus 1271 -~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e 1349 (1490)
T TIGR01271 1271 -TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD 1349 (1490)
T ss_pred -CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccccccccc
Confidence 7999999999999999999999999999999999999999999999999999999999996421 222368999999
Q ss_pred hhhhhcccccccee
Q 000671 1346 KFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1346 ~~~~~~~~~~~~~~ 1359 (1361)
.|+|+|.|||||+.
T Consensus 1350 ~G~nLSgGQrQrL~ 1363 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMC 1363 (1490)
T ss_pred CCCcCCHHHHHHHH
Confidence 99999999999974
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-165 Score=1674.64 Aligned_cols=1160 Identities=28% Similarity=0.436 Sum_probs=981.2
Q ss_pred CCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhc-----------------
Q 000671 197 QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENN----------------- 259 (1361)
Q Consensus 197 ~~p~~~a~~~s~~~f~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~----------------- 259 (1361)
+.||++|||+.++++.|++|++.+..|..|+++|+|+...+.|+-+...++.+..++...++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1560)
T PTZ00243 59 PVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDAS 138 (1560)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecccc
Confidence 468999999999999999999999999999999999999999997766666554433221100
Q ss_pred ----------------------------------C---------------------------------------------
Q 000671 260 ----------------------------------S--------------------------------------------- 260 (1361)
Q Consensus 260 ----------------------------------~--------------------------------------------- 260 (1361)
.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (1560)
T PTZ00243 139 SRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSSTG 218 (1560)
T ss_pred ccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecccc
Confidence 0
Q ss_pred ---------CCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Q 000671 261 ---------NNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVE 331 (1361)
Q Consensus 261 ---------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~ 331 (1361)
+++..+++++++++|++.++..++++++.+++.+++|++++.+++|+++++.....|+.++++++++.+++
T Consensus 219 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~~ 298 (1560)
T PTZ00243 219 SVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLIQ 298 (1560)
T ss_pred cccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH
Confidence 00112589999999999999999999999999999999999999999765545556888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC--CCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 000671 332 SFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRK--KHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAI 409 (1361)
Q Consensus 332 ~~~~~~~~~~~~~~~~riR~~l~~~Iy~K~L~ls~~~~~--~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~ 409 (1361)
+++.++|+|...+.++++|++|.+.||+|+++++..+.. +.++|+++|+|++|++++.+++.++|.+|.+|+++++++
T Consensus 299 ~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~~ 378 (1560)
T PTZ00243 299 SVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSI 378 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999886654 568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHH
Q 000671 410 GVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKE 489 (1361)
Q Consensus 410 ~~L~~~lG~~~l~gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~E 489 (1361)
++||.++||++++|++++++++|++.++++.+.++++++|+.+|+|++.++|+++|||+||+||||+.|.++|++.|++|
T Consensus 379 ~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~E 458 (1560)
T PTZ00243 379 LLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARE 458 (1560)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 490 FKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569 (1361)
Q Consensus 490 l~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI 569 (1361)
++.+++..+..++..++++.+|.++.+++|++|++.+ ++||++++||++++|+.++.|+.++|..++.+.++++|++||
T Consensus 459 l~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g-~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI 537 (1560)
T PTZ00243 459 LRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLG-HELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRI 537 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888999999999999998886 889999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCch---hhh--------c------------------c-----------------------------ccCC
Q 000671 570 NAFLLDHELNNDD---VRR--------I------------------S-----------------------------LQKS 591 (1361)
Q Consensus 570 ~~fL~~~e~~~~~---~~~--------~------------------~-----------------------------~~~~ 591 (1361)
++||..+|.+... .+. . + ....
T Consensus 538 ~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1560)
T PTZ00243 538 STFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHP 617 (1560)
T ss_pred HHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccc
Confidence 9999877632100 000 0 0 0001
Q ss_pred CCcEEEEeeEEEeCCC-------------------------------------CCCCcccceeEEecCCeEEEEeCCCCC
Q 000671 592 DRSVKIQEGNFSWDPE-------------------------------------LAIPTLRGVNLDIKWAQKIAVCGSVGA 634 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~-------------------------------------~~~~~L~~i~l~i~~G~~~~ivG~~Gs 634 (1361)
...+.++|++|+|+.. .++++|+|+||+|++||+++|+|||||
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGs 697 (1560)
T PTZ00243 618 SPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGS 697 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCC
Confidence 1246677777765310 124589999999999999999999999
Q ss_pred CHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCcccc
Q 000671 635 GKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714 (1361)
Q Consensus 635 GKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig 714 (1361)
||||||++|+|+++|++|+|.++++|||+||+||++++||+|||.|+.++++++|++++++|++++|++.+|+|++|.+|
T Consensus 698 GKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~ 777 (1560)
T PTZ00243 698 GKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIG 777 (1560)
T ss_pred cHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhc
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCC
Q 000671 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1361)
Q Consensus 715 ~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 794 (1361)
++|.+|||||||||+||||+|++||+||||||||+||++++++++++++....+|+|+|++||+++.++.||+|++|++|
T Consensus 778 ~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G 857 (1560)
T PTZ00243 778 EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDG 857 (1560)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999998876666799999999999999999999999999
Q ss_pred eEEEecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCC-CCccccccccccCcc
Q 000671 795 QITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRK-ESSEGEISVKGLTQL 873 (1361)
Q Consensus 795 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l 873 (1361)
++.++|+++++.+.+ .+.++........+..+...+......+. .................. .............++
T Consensus 858 ~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 935 (1560)
T PTZ00243 858 RVEFSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVAEVDA-APGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRL 935 (1560)
T ss_pred EEEEecCHHHHHhCh-HHHHHHHhhcccccccccccccccccccc-cccccccccccccccccccccccccccccccchh
Confidence 999999999998653 45555433211110000000000000000 000000000000000000 000000000111345
Q ss_pred chHHHHhhCcccHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHHHHH
Q 000671 874 TEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK-ITSGILIGVYAGVSTASAVFV 952 (1361)
Q Consensus 874 ~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~~-~~~~~~l~iy~~l~~~~~i~~ 952 (1361)
.++|+++.|.++|++|+.|++..++...+++.+++.+...++....++|++.|.+... .....|+++|+++.++..++.
T Consensus 936 ~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~~~~~~ 1015 (1560)
T PTZ00243 936 MTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFSV 1015 (1560)
T ss_pred hhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHHHHHH
Confidence 6778888999999999999998766555544455555556777888999999986431 234567888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 953 YFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTF 1032 (1361)
Q Consensus 953 ~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~ 1032 (1361)
+++.+.....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++
T Consensus 1016 ~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~ 1095 (1560)
T PTZ00243 1016 PLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSA 1095 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHH
Q 000671 1033 VTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFF 1112 (1361)
Q Consensus 1033 ~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~ 1112 (1361)
.+|.++++++|++++++++.++|.+.+|+++|.++.+++|++++++|+++|+.|||+|+++++|.+++.+..|.+.++.+
T Consensus 1096 ~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~ 1175 (1560)
T PTZ00243 1096 SQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSY 1175 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 99988877888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000671 1113 HTNGVMEWLILRVEALQNLTLFTAALFLV---LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189 (1361)
Q Consensus 1113 ~~~~~~~wl~~rl~~l~~l~~~~~~~~~v---l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e 1189 (1361)
.....++|+..+.++++++.+++++++++ ....+.+++|.++++++|+.++..++.++++.++++|+.++|+|||.+
T Consensus 1176 ~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~ 1255 (1560)
T PTZ00243 1176 LENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLY 1255 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776555444432 223456789999999999999999999999999999999999999999
Q ss_pred hhcC-CCCCCCC-----------------------CCCCCCC---CCCCCcceEEEEEEEEEeCCCCCCccccceEEeeC
Q 000671 1190 FMHI-PPEPPAI-----------------------VEDKRPP---SSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSE 1242 (1361)
Q Consensus 1190 ~~~~-~~E~~~~-----------------------~~~~~~~---~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~ 1242 (1361)
|++. |+|+... .++..++ +.||.+|.|+|+||+|+|+++.++|||||||+|+|
T Consensus 1256 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~ 1335 (1560)
T PTZ00243 1256 YTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAP 1335 (1560)
T ss_pred HHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECC
Confidence 9963 4432110 0011122 23567899999999999998878899999999999
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCCCCCHHHH
Q 000671 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEI 1322 (1361)
Q Consensus 1243 GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~~~sDeeI 1322 (1361)
|||||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+||
T Consensus 1336 GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI 1415 (1560)
T PTZ00243 1336 REKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEV 1415 (1560)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1323 WKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1323 ~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
|+||++|+-.. +---|+|+..++.|.|+|.|||||+.
T Consensus 1416 ~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLa 1455 (1560)
T PTZ00243 1416 WAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMC 1455 (1560)
T ss_pred HHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHH
Confidence 99999996321 22236899999999999999999974
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-121 Score=1147.14 Aligned_cols=1064 Identities=21% Similarity=0.263 Sum_probs=788.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCC--cc---h-HHHHHHHHHHHHHHHHHHH-HHH
Q 000671 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN---RGE--EN---L-QEGLSIVGCLIITKVVESF-TQR 336 (1361)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~---~~~--~~---~-~~g~~~~~~l~~~~~~~~~-~~~ 336 (1361)
+++....+-+.++++..+..+...+.+..+|++...+.+..+ ... .. . ..++.+. .+.+..++.++ ...
T Consensus 15 ~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~-~lg~~~~~~~~~q~~ 93 (1228)
T KOG0055|consen 15 FFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFV-YLGVGVFISGFIQVS 93 (1228)
T ss_pred hHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 444444455778888888888999999999998755443221 111 11 1 1122222 22222233333 346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-----HHHHHHHHHHHHHHHHHH
Q 000671 337 HCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-----WFHLTWSLALQLFLAIGV 411 (1361)
Q Consensus 337 ~~~~~~~~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-----~~~~~w~~plqi~va~~~ 411 (1361)
+|.+.+.|...|+|..+..++.||...+.+. +++|++++.|+.|+++|+|.+. ++|.+-....-++++++.
T Consensus 94 c~~~~geRq~~riR~~yl~~iLrQdi~~fD~----~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 94 CWMRTGERQTARIRSKYLKAILRQDIGWFDT----NSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccceeec----ccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999874 4459999999999999887543 455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHH
Q 000671 412 LFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFK 491 (1361)
Q Consensus 412 L~~~lG~~~l~gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~ 491 (1361)
.| .+.. +++.+..++......+++.+.+...+.++...+.-++++|++++||+|-.|+-|+...++-.+.=+.-.|
T Consensus 170 ~W-~Ltl---v~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k 245 (1228)
T KOG0055|consen 170 GW-KLTL---VMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALK 245 (1228)
T ss_pred HH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHH
Confidence 33 3333 3333222233334556788888888888888899999999999999999999998765554332222222
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 492 W-LSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRIN 570 (1361)
Q Consensus 492 ~-l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~ 570 (1361)
. +|+..+......+.+++.-....+..|.+..++..+..+++.+|+++...-.....|.+..+.+..+.+|+++..+|.
T Consensus 246 ~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~ 325 (1228)
T KOG0055|consen 246 FGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIF 325 (1228)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHH
Confidence 2 222222222222233333333344455554444447899999999988777778889999999999999999999999
Q ss_pred HHhccc-CCCCchhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC
Q 000671 571 AFLLDH-ELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK 649 (1361)
Q Consensus 571 ~fL~~~-e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~ 649 (1361)
+-++.. +.++.+.........++.|+++|+.|+|+.+++.++|+|+||+|++|+.+++||+|||||||++++|.|+++|
T Consensus 326 ~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP 405 (1228)
T KOG0055|consen 326 ETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP 405 (1228)
T ss_pred HHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 988643 3333222222334467899999999999999888999999999999999999999999999999999999999
Q ss_pred CCcEEEEcC-------------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccC
Q 000671 650 ISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715 (1361)
Q Consensus 650 ~~G~v~~~g-------------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~ 715 (1361)
++|+|.++| +||.|+|+|.+|+.||+|||.||+| ...++..+++++....+.+..+|+|++|.+||
T Consensus 406 ~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge 485 (1228)
T KOG0055|consen 406 TSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGE 485 (1228)
T ss_pred CCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccC
Confidence 999999998 5999999999999999999999996 56888999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCe
Q 000671 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1361)
Q Consensus 716 ~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1361)
+|..|||||||||||||||.+||+||||||||||||++.++.+ ++.++...+|+|.|+|+|+++.+++||+|++|++|+
T Consensus 486 ~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~V-q~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~ 564 (1228)
T KOG0055|consen 486 RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVV-QEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGK 564 (1228)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHH-HHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCE
Confidence 9999999999999999999999999999999999999998865 667788889999999999999999999999999999
Q ss_pred EEEecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCccccccccCCCCCCCCCCCCCC-CCccccc--cccccCc
Q 000671 796 ITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRK-ESSEGEI--SVKGLTQ 872 (1361)
Q Consensus 796 i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~ 872 (1361)
|+|.|+|+||++.++.|.++++.+.....+.+.+++++. .++......... ......+.. .....+. ..++...
T Consensus 565 IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~--~~~~~~s~~~s~-~~~~~~~~~~~~~~~~~~~~~e~~~~ 641 (1228)
T KOG0055|consen 565 IVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESL--KEERSRSLKSSS-SSPSLSRGSNRSNLLSVKPEGEDPEE 641 (1228)
T ss_pred EEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccch--hhhhhhcccccc-ccccccCCcccccccccccccccccc
Confidence 999999999999999999999876533221110000000 000000000000 000000000 0000000 0000000
Q ss_pred cchHHHHhhCcccHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-C---CchhHHHHHHHH
Q 000671 873 LTEDEEMEIGDVGWKPFMDYLNVSK-GMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI----P-K---ITSGILIGVYAG 943 (1361)
Q Consensus 873 l~~~e~~~~g~v~~~~y~~y~~~~~-g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~----~-~---~~~~~~l~iy~~ 943 (1361)
...+|+ -.++ +++.++..+ .|..+++++++.++..+..+...+.++...+. + + .....|..+|++
T Consensus 642 ~~~~~~---~~~s---~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~ 715 (1228)
T KOG0055|consen 642 PVSEED---EKVS---FWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLG 715 (1228)
T ss_pred cccccc---cccc---HHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 000011 1233 444444433 46666677777776666666666666654321 1 1 112347788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc--cChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHH
Q 000671 944 VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGRILTRLSSDLSILDFDIPFSIVFVAASGT 1021 (1361)
Q Consensus 944 l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~--tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~ 1021 (1361)
++++..++.+++.+++...|.+..+++|..+|+++++.+++|||. |. |+|.+|+++|...+...+...+..+++++.
T Consensus 716 l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~ 794 (1228)
T KOG0055|consen 716 LGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIA 794 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997 56 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHH
Q 000671 1022 ELLAIIGIMTFVTWQVLVVAI---FAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQ 1098 (1361)
Q Consensus 1022 ~~i~~i~v~~~~~~~l~lv~i---p~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~ 1098 (1361)
.+++.+++.++.+|+++++++ |++.+..+.+.+++.. ..+.+............|++++++||++|+.|++|++
T Consensus 795 ~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~---~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~ 871 (1228)
T KOG0055|consen 795 AVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKG---FSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFME 871 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHH
Confidence 999999999999999987765 5554444554444432 2222333333456788999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 1099 NYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF----LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWY 1174 (1361)
Q Consensus 1099 ~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~----~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~ 1174 (1361)
.|.+.++...+..+... .|-++...+-.++..+.-++. .+++..|.+++..+-..+.-...-...+.......
T Consensus 872 ~y~~~l~~p~~~~~~~~---~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~ 948 (1228)
T KOG0055|consen 872 LYKEELEKPRKSSFKRG---LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYA 948 (1228)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999988777665443 333444333333333332222 35667888888876655544444444556667778
Q ss_pred HHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEe--CCCCCCccccceEEeeCCcEEEEEcCC
Q 000671 1175 CYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRT 1252 (1361)
Q Consensus 1175 ~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y--~~~~~~VLk~Isf~I~~GekVgIVGrT 1252 (1361)
.++-++..|+.+|++.++.+++-+...+.. ....+.+|+|+|+||+|+| ||+- +||+|+|++|++||+||+||+|
T Consensus 949 Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~--~~~~~~~G~I~~~~V~F~YPsRP~~-~Il~~l~l~i~~GqTvALVG~S 1025 (1228)
T KOG0055|consen 949 PDISKAKIAAGSIFEILDRKPTIDPDSTSG--GKLPNVKGDIEFRNVSFAYPTRPDV-PVLNNLSLSIRAGQTVALVGPS 1025 (1228)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCCCC--CccccceeEEEEeeeEeeCCCCCCc-hhhcCCcEEecCCCEEEEECCC
Confidence 899999999999999999877432211111 1112478999999999999 4555 4999999999999999999999
Q ss_pred CCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCC-CCCCHHHHHHHHhhCc-
Q 000671 1253 GSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKVSQLTP- 1330 (1361)
Q Consensus 1253 GSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~-~~~sDeeI~~AL~~~~- 1330 (1361)
||||||++.+|.|||||.+|.|.|||+||++++++.||++|++|.|||.||++||||||... .+.|.+||.+|++.|.
T Consensus 1026 GsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANa 1105 (1228)
T KOG0055|consen 1026 GSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANA 1105 (1228)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999855 2479999999999983
Q ss_pred --CCCCCCcccccCCchhhhhhcccccccee
Q 000671 1331 --NSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1331 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
--.+--=|.|+++++.|-.+|.|||||+.
T Consensus 1106 H~FI~sLP~GyDT~vGerG~QLSGGQKQRIA 1136 (1228)
T KOG0055|consen 1106 HNFISSLPQGYDTRVGERGVQLSGGQKQRIA 1136 (1228)
T ss_pred HHHHhcCcCcccCccCcccCcCCchHHHHHH
Confidence 12233337899999999999999999974
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-110 Score=1126.14 Aligned_cols=1076 Identities=16% Similarity=0.142 Sum_probs=739.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 274 VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSAL 353 (1361)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l 353 (1361)
.+++.+++..++.++..++..+.|+++..+++-+...+ .... ++..+++..++..++...+.+...+++.++-..+
T Consensus 57 ~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~-~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 132 (1466)
T PTZ00265 57 SHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE-NVND---IIFSLVLIGIFQFILSFISSFCMDVVTTKILKTL 132 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667777777777777777777776442111 1111 1111111122222222222233344555555555
Q ss_pred HHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 000671 354 MVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLFLI 429 (1361)
Q Consensus 354 ~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~---~~lG~~~l~gl~v~~l 429 (1361)
...+|+|.++++..-.+..+.|++.|.++.|++.+.+.+. .+..+...++.++.++++++ |.+.+.+++.++ +
T Consensus 133 R~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~p---l 209 (1466)
T PTZ00265 133 KLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFP---L 209 (1466)
T ss_pred HHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---H
Confidence 5666666666665444456789999999999999887543 34444455555555555444 334333333332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000671 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT-VIYW 508 (1361)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~-~~~~ 508 (1361)
++.+...+.+.+++..++..+..++..+.+.|.++|||+||.|+-|+.+.++.++..+.-.+...+.....++.. +...
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~ 289 (1466)
T PTZ00265 210 IYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMING 289 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233345567777777888888889999999999999999999999998887776544433333223222222211 1111
Q ss_pred HHHHHHHHHHH-HHHHHhCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 000671 509 MSPTIISSVIF-LGCALTGS-------APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN 580 (1361)
Q Consensus 509 ~~p~~v~~~~f-~~~~l~~~-------~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~ 580 (1361)
+......++.+ +++.+..+ +.++++.+++.+........++..+...+..+.++.+|.+||.+.++.++..+
T Consensus 290 ~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~ 369 (1466)
T PTZ00265 290 FILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVE 369 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 11111222223 33333332 35788888776655444445556666678899999999999999997643221
Q ss_pred chhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEc-C-
Q 000671 581 DDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-G- 658 (1361)
Q Consensus 581 ~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~-g- 658 (1361)
...+....+ ....|+++|++|+|+.+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |
T Consensus 370 ~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~ 448 (1466)
T PTZ00265 370 NNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSH 448 (1466)
T ss_pred CCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCc
Confidence 111111111 1237999999999986544579999999999999999999999999999999999999999999994 3
Q ss_pred ------------eEEEEecCCcCCCCCHHHHhhcCCC-------------------------------------------
Q 000671 659 ------------SIAYVSQTSWIQSGSIRDNILYGKP------------------------------------------- 683 (1361)
Q Consensus 659 ------------~iayv~Q~~~i~~~ti~eni~~g~~------------------------------------------- 683 (1361)
+||||+|+|.+|++||+|||.+|..
T Consensus 449 ~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 449 NLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred chhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 3999999999999999999999741
Q ss_pred ---------------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000671 684 ---------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1361)
Q Consensus 684 ---------------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1361)
.++++..++++.+++++.+..+|+|.+|.+|++|.+|||||||||+||||++++|+|+|||||||
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTS 608 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATS 608 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 23456788888899999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCC---------------------------------
Q 000671 749 AVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGG--------------------------------- 794 (1361)
Q Consensus 749 alD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G--------------------------------- 794 (1361)
+||+++++.+.+.+.+... +|+|+|+|||+++.+..||+|++|++|
T Consensus 609 aLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1466)
T PTZ00265 609 SLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNN 688 (1466)
T ss_pred ccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccccc
Confidence 9999999998766554433 589999999999999899999999986
Q ss_pred --------------eEEEecChHHHHh-cCchHHHHHHHhhhhccCCC-C-CCCCCCCCcccccccc-CCCCCCCC----
Q 000671 795 --------------QITQSGNYQELLL-AGTAFEQLVNAHRDAITGLG-P-LDNAGQGGAEKVEKGR-TARPEEPN---- 852 (1361)
Q Consensus 795 --------------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~-~~~~~~~~---- 852 (1361)
+|+|+|+|+||++ .++.|..+++.+........ . .+.............. ....++..
T Consensus 689 ~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (1466)
T PTZ00265 689 NNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSK 768 (1466)
T ss_pred cccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccccccccccccccccc
Confidence 5999999999998 58889988866432211100 0 0000000000000000 00000000
Q ss_pred -CCCCCCCCccccc------cccccCccchHHHH----hhCcccHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Q 000671 853 -GIYPRKESSEGEI------SVKGLTQLTEDEEM----EIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATY 921 (1361)
Q Consensus 853 -~~~~~~~~~~~~~------~~~~~~~l~~~e~~----~~g~v~~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~ 921 (1361)
............. +.....+...-++. ......+..++++++..... +++++++.++..++.++.++
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 846 (1466)
T PTZ00265 769 HENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKD--VTIIALSILVAGGLYPVFAL 846 (1466)
T ss_pred ccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000 00000000000000 00011223344444333222 23333334444555566666
Q ss_pred HHHHHhcCC----CC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc--cChhH
Q 000671 922 WLAYAIQIP----KI--TSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGR 993 (1361)
Q Consensus 922 wl~~~~~~~----~~--~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~--tp~Gr 993 (1361)
.++.+++.. .. ....+..++++++++..++.+++.++..+.+.+...++|.++++++++.|++|||+ +++|+
T Consensus 847 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~ 926 (1466)
T PTZ00265 847 LYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGL 926 (1466)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHH
Confidence 666654321 00 12234556667777888888999999999999999999999999999999999996 89999
Q ss_pred HHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH------
Q 000671 994 ILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIA--TARELIRI------ 1065 (1361)
Q Consensus 994 IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~--~sr~l~rl------ 1065 (1361)
+++|+++|++.+...+...+..++..++.+++.++++++.+|.++++++|++++.........+ ..++.++.
T Consensus 927 l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1466)
T PTZ00265 927 LSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPG 1006 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999988989999999999999999999999887766554433222111111 11111111
Q ss_pred -------HhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 1066 -------NGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAAL 1138 (1361)
Q Consensus 1066 -------~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~ 1138 (1361)
+.+..+...+.++|+++|++|||+|+.|+++.++|.+..+...+..........++....+++..+..+++.+
T Consensus 1007 ~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1086 (1466)
T PTZ00265 1007 TVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYW 1086 (1466)
T ss_pred cccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222445678999999999999999999999999999998887776665555555544445444443333332
Q ss_pred H-hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCC-CCCCCCcceE
Q 000671 1139 F-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRP-PSSWPFKGRI 1216 (1361)
Q Consensus 1139 ~-~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~-~~~wp~~G~I 1216 (1361)
+ +.++..|.++.|.+..++.+.+....++..+...+.+++++..|.+|+.++++.+++.+...++..+ +...+.+|.|
T Consensus 1087 ~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I 1166 (1466)
T PTZ00265 1087 FGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKI 1166 (1466)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceE
Confidence 2 4556789999998888776655555567778889999999999999999999876643211111111 0112356899
Q ss_pred EEEEEEEEeCCC-CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC--------------------------
Q 000671 1217 ELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-------------------------- 1269 (1361)
Q Consensus 1217 ~f~nVs~~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep-------------------------- 1269 (1361)
+|+||+|+|+.. ..+||+|+||+|+|||+|||||+||||||||+++|.|||+|
T Consensus 1167 ~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 (1466)
T PTZ00265 1167 EIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDE 1246 (1466)
T ss_pred EEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccc
Confidence 999999999632 23599999999999999999999999999999999999999
Q ss_pred ----------------------------CCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCC-CCCCHH
Q 000671 1270 ----------------------------AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDD 1320 (1361)
Q Consensus 1270 ----------------------------~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~-~~~sDe 1320 (1361)
++|+|+|||+||+++++++||++|++|||||+||+|||||||... .+++||
T Consensus 1247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~e 1326 (1466)
T PTZ00265 1247 EQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRE 1326 (1466)
T ss_pred ccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHH
Confidence 699999999999999999999999999999999999999999755 258999
Q ss_pred HHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1321 EIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1321 eI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
||++|++.|+-.. .--=|.|+..+++|.++|.|||||+.
T Consensus 1327 eI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIa 1368 (1466)
T PTZ00265 1327 DVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIA 1368 (1466)
T ss_pred HHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHH
Confidence 9999999985211 11226788889999999999999974
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-69 Score=685.94 Aligned_cols=542 Identities=21% Similarity=0.255 Sum_probs=419.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1361)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 348 (1361)
+...+.+++.++...++.++..++..+.|+++..+++....+..+....+.+++++++..++..++.....+...+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (588)
T PRK11174 14 KQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQH 93 (588)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888888999999999999999999886431111112222333344445555566555555667788999
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 000671 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGL 424 (1361)
Q Consensus 349 iR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~---~~lG~~~l~gl 424 (1361)
+...+...+|+|.++++.....+.++|+++|.++.|++++.++.. .+..++...+.+++++++++ +.+++.+++.+
T Consensus 94 ~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~ 173 (588)
T PRK11174 94 IRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTA 173 (588)
T ss_pred HHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998777788999999999999999998653 45555555555555544443 33333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000671 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI----ESRREKEFKWLSEAQLRK 500 (1361)
Q Consensus 425 ~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i----~~~R~~El~~l~~~~~~~ 500 (1361)
.+...+...+.+..++.+++.++..++..+.+.|.++|+++||.|+||+.+.++. ++.|+.+.+..+......
T Consensus 174 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (588)
T PRK11174 174 ---PLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSS 250 (588)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233456777888888899999999999999999999999999999876655 555666655444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000671 501 AYGTVIYWMSPTIISSVIFLGCALTGS-------APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573 (1361)
Q Consensus 501 ~~~~~~~~~~p~~v~~~~f~~~~l~~~-------~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL 573 (1361)
.+..++... +. +.++.++++.+.+. ..+++..+|.++.+...+..|+..++..+..+.++++|.+||.+++
T Consensus 251 ~~~~~~~~~-~~-~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 328 (588)
T PRK11174 251 AVLEFFASI-SI-ALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFL 328 (588)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222221 11 11223334333331 1234445566666777888999999999999999999999999999
Q ss_pred cccCCCCchhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcE
Q 000671 574 LDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1361)
Q Consensus 574 ~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~ 653 (1361)
+.++.++.......+....+.|+++|++|.|.++ +++|+|+||++++||+++|+|+||||||||+++|+|++ |++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~ 405 (588)
T PRK11174 329 ETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS 405 (588)
T ss_pred cCCCcccCCCccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence 8765322111100111123469999999877643 47999999999999999999999999999999999999 89999
Q ss_pred EEEcC-------------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCC
Q 000671 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1361)
Q Consensus 654 v~~~g-------------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1361)
|.++| +|+||||+|++|++||+|||.+|++ .+++++.++++.|+++++++.+|+|++|.|||+|.+
T Consensus 406 I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~ 485 (588)
T PRK11174 406 LKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485 (588)
T ss_pred EEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCC
Confidence 99998 5999999999999999999999965 889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEe
Q 000671 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1361)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1361)
||||||||++||||++++|+|+||||||||||++++++|.+. +....+++|+|+|||+++.++.||+|++|++|+|+++
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~-l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~ 564 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA-LNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQ 564 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeec
Confidence 999999999999999999999999999999999999999864 4555689999999999999999999999999999999
Q ss_pred cChHHHHhcCchHHHHHHHh
Q 000671 800 GNYQELLLAGTAFEQLVNAH 819 (1361)
Q Consensus 800 g~~~~l~~~~~~~~~~~~~~ 819 (1361)
|+++|++++++.|.++...+
T Consensus 565 G~~~eL~~~~~~y~~l~~~q 584 (588)
T PRK11174 565 GDYAELSQAGGLFATLLAHR 584 (588)
T ss_pred CCHHHHHhcchHHHHHHHHh
Confidence 99999999988888887554
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-69 Score=641.20 Aligned_cols=538 Identities=20% Similarity=0.305 Sum_probs=425.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc---chHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE---NLQEG-LSIVGCLIITKVVESFTQRHCFFGSRRS 345 (1361)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~---~~~~g-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (1361)
.+.+..|+.+..+.++.++........|.++..+++-+...++ ..... ..+.++.++..+...+-..++.+...|+
T Consensus 140 ~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv 219 (716)
T KOG0058|consen 140 GLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERV 219 (716)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667778888888888888999999999998886654111 12222 2333333344444444456677788889
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 000671 346 GMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGE-FPFWFHLTWSLALQLFLAIGVLF---GVVGLGAL 421 (1361)
Q Consensus 346 ~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~-~~~~~~~~w~~plqi~va~~~L~---~~lG~~~l 421 (1361)
..|+|..+...+.++.+...+ ++.+||+++.++.|++-+.+ +..++....-..+|.+.++.+++ +.+....+
T Consensus 220 ~~rlR~~lF~sil~QdiaFFD----~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~ 295 (716)
T KOG0058|consen 220 VARLRTDLFRSLLRQDIAFFD----ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTL 295 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhhc----cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 999999988888888888876 45699999999999999988 45567777777788888877665 44444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH----HHHHHHHHHHHHHHHHHHHH
Q 000671 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK----FKSLIESRREKEFKWLSEAQ 497 (1361)
Q Consensus 422 ~gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~----f~~~i~~~R~~El~~l~~~~ 497 (1361)
+.+++++ .+...+++++++..++..++..+-.+..+|.|++||+|+.|+-|+. |.+++++.++.- +|-.
T Consensus 296 i~~P~v~---~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~----~k~a 368 (716)
T KOG0058|consen 296 IVVPIVA---LVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLS----KKEA 368 (716)
T ss_pred HHhcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHH----HHHH
Confidence 3333322 2345567777888888888888889999999999999999999965 444444443332 2222
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000671 498 LRKAYGTVIYW-MSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH 576 (1361)
Q Consensus 498 ~~~~~~~~~~~-~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~ 576 (1361)
+..++....+. +.-..+..+.|.+-.++..+.+|++...+.+..-..+..++..+....+.++++..+.+|+.+|++.+
T Consensus 369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~ 448 (716)
T KOG0058|consen 369 VAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRK 448 (716)
T ss_pred HHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccC
Confidence 21111111100 11112222333444444458999999998888888899999999999999999999999999999764
Q ss_pred CCCCchhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEE
Q 000671 577 ELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL 656 (1361)
Q Consensus 577 e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~ 656 (1361)
..-+.+ ....+....+.|+|+|++|+|+.+++.++|+|+||+|+|||.+|+|||||+||||+.++|+++|+|++|+|.+
T Consensus 449 P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 449 PRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILL 527 (716)
T ss_pred CCCCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 332222 1111224678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-------------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 657 YG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 657 ~g-------------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
|| +||+|.|+|.+|++||+|||.||.+ .++|++.++.+.+..++.+..+|+|++|.+||+|..|||
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 98 4999999999999999999999987 568889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecCh
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~ 802 (1361)
||||||||||||++||.|+||||.|||||++.+..+ ++.+....+++|||+++|+++.+++||+|+|+++|+++|.|+|
T Consensus 608 GQKQRIAIARALlr~P~VLILDEATSALDaeSE~lV-q~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h 686 (716)
T KOG0058|consen 608 GQKQRIAIARALLRNPRVLILDEATSALDAESEYLV-QEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTH 686 (716)
T ss_pred hHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHH-HHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccH
Confidence 999999999999999999999999999999997765 6677777889999999999999999999999999999999999
Q ss_pred HHHHhcC-chHHHHHHHhh
Q 000671 803 QELLLAG-TAFEQLVNAHR 820 (1361)
Q Consensus 803 ~~l~~~~-~~~~~~~~~~~ 820 (1361)
+|+++.. +.|.++++.+.
T Consensus 687 ~eLl~~~~gly~~Lv~~q~ 705 (716)
T KOG0058|consen 687 DELLSKPNGLYAKLVQRQL 705 (716)
T ss_pred HHHhhCcccHHHHHHHHhc
Confidence 9999987 68999987654
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-65 Score=636.79 Aligned_cols=545 Identities=23% Similarity=0.330 Sum_probs=437.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1361)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1361)
.++...+-+++.+.-..+..++..+++++.|++.+.+++.+-.. .....-+.++.++.+..+.+.++...-.+...+++
T Consensus 144 ~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~-~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~ 222 (709)
T COG2274 144 WFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPD-ASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLG 222 (709)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555777777777888888999999999999999865322 22223334445555555666655433344566789
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 000671 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIG---VLFGVVGLGALPG 423 (1361)
Q Consensus 347 ~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~~---~L~~~lG~~~l~g 423 (1361)
.|+...+...+|++.++++..-..++++|++++.+ .|.++|.++... ...+.++.+..+++ +++..-++-+++.
T Consensus 223 ~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~--~~l~~iiD~~~~~i~l~vm~~ys~~L~li~ 299 (709)
T COG2274 223 KRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTG--SILTLIIDLLFALIFLAVMFLYSWKLTLIV 299 (709)
T ss_pred HHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888999999998 489999887652 23344444443333 3444444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG 503 (1361)
Q Consensus 424 l~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~ 503 (1361)
++.+.+.+.+..++.+.+++..++.++...++-+...|.++||++||..+-|+.+..+.++.=.+..+.-.+........
T Consensus 300 l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 379 (709)
T COG2274 300 LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALIL 379 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 55555555566677888888889999999999999999999999999999999988888776666555433333322222
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCch
Q 000671 504 TVIYWMSPTII-SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1361)
Q Consensus 504 ~~~~~~~p~~v-~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 582 (1361)
.......+.+. .++.+++..++.++.+|.+..++..++...+..|+..+......+.+++++.+|+.+.++.|..++.+
T Consensus 380 ~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~ 459 (709)
T COG2274 380 NTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 22211222222 23344555555558999999999999999999999999999999999999999999999876543322
Q ss_pred hhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----
Q 000671 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1361)
Q Consensus 583 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---- 658 (1361)
......++.++.|+++|++|+|+.++ +++|+|+|++|++||.++|+|+||||||||+|+|+|+++|++|+|.++|
T Consensus 460 ~~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 460 KTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred cccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 21223445678999999999999764 4799999999999999999999999999999999999999999999998
Q ss_pred ---------eEEEEecCCcCCCCCHHHHhhcCCCC-CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 659 ---------SIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 659 ---------~iayv~Q~~~i~~~ti~eni~~g~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
+|+||+|++.+|++||+|||.++.|. +.++..++++..+.++++..+|.|++|.+||+|.+||||||||+
T Consensus 539 ~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl 618 (709)
T COG2274 539 DIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL 618 (709)
T ss_pred hcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 59999999999999999999999985 45888899999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
+||||++++|+|++|||||||||+++++.+.+.+. ...+|+|+|++||+++.+++||+|+||++|+|+++|+++|+++.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~-~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHH-HHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 99999999999999999999999999999988754 45678999999999999999999999999999999999999999
Q ss_pred CchHHHHHH
Q 000671 809 GTAFEQLVN 817 (1361)
Q Consensus 809 ~~~~~~~~~ 817 (1361)
++.|.++..
T Consensus 698 ~g~y~~l~~ 706 (709)
T COG2274 698 GGLYARLYQ 706 (709)
T ss_pred cChHHHHHh
Confidence 988888764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-65 Score=655.69 Aligned_cols=542 Identities=23% Similarity=0.274 Sum_probs=421.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1361)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1361)
+++..++.+++.++...++.++..++..+.|+++..+++.+-... ....-+.+++++++..++..++.....+...+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA-DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLE 204 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777888888888999999999999999988653221 1122223333444444445555444445667889
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGL 424 (1361)
Q Consensus 347 ~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~--~~~~w~~plqi~va~~~L~~~lG~~~l~gl 424 (1361)
.++...+...+|+|.++++.....+.++|+++|.++ |++.+.++... +..+...++ +++++++++..-++-+++.+
T Consensus 205 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l 282 (686)
T TIGR03797 205 TRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSWKLALVAV 282 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876556788999999997 88888875432 223333333 33444444443334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT 504 (1361)
Q Consensus 425 ~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~ 504 (1361)
+++.+...+...+.+..++..++.++..+++.+...|.++|+++||.++.|+.+.++.++.-++..+...+.........
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (686)
T TIGR03797 283 ALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556677888888899999999999999999999999999999998877766655444333333222222221
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh
Q 000671 505 VIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1361)
Q Consensus 505 ~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 583 (1361)
.+......+ ..++.+.+..++.++.+|.+.+++...++..+..|+..++..+..+.+++++++|+.++++.++..+..
T Consensus 363 ~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~- 441 (686)
T TIGR03797 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA- 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC-
Confidence 111111111 222223333344447899999999999999999999999999999999999999999999765422111
Q ss_pred hhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000671 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1361)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----- 658 (1361)
...+....+.|+++|++|+|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 442 -~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 519 (686)
T TIGR03797 442 -KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAG 519 (686)
T ss_pred -cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCc
Confidence 11111234579999999999754 35799999999999999999999999999999999999999999999988
Q ss_pred --------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 --------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 --------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
+||||||+|++|++||+|||.++++.+++++.++++.++++++++.+|+|.+|.+|++|.+||||||||++|
T Consensus 520 ~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRial 599 (686)
T TIGR03797 520 LDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLI 599 (686)
T ss_pred CCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence 499999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1361)
|||++++|++++||||||+||+++++++.+.+... ++|+|+|||+++.++.||+|++|++|+|++.|+++|++++++
T Consensus 600 ARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~ 676 (686)
T TIGR03797 600 ARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREG 676 (686)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999998876442 589999999999999999999999999999999999999888
Q ss_pred hHHHHHH
Q 000671 811 AFEQLVN 817 (1361)
Q Consensus 811 ~~~~~~~ 817 (1361)
.|.++.+
T Consensus 677 ~y~~l~~ 683 (686)
T TIGR03797 677 LFAQLAR 683 (686)
T ss_pred HHHHHHH
Confidence 8888764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-65 Score=659.81 Aligned_cols=541 Identities=19% Similarity=0.232 Sum_probs=424.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1361)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1361)
..++.+++.++...+..++..++..+.|+++..+++..-... .....+.+++++++..++..++.....+...+++.++
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (710)
T TIGR03796 147 RRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQG-RQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKL 225 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667777778888888999999999999988543221 1112223333444444555555544556677889999
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1361)
Q Consensus 350 R~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~ 428 (1361)
...+...+|+|.++++.....+.++|+++|.++.| +.+.++.. .+..+....+.+++.+++++..-++-+++.++.+.
T Consensus 226 ~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 304 (710)
T TIGR03796 226 AVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAA 304 (710)
T ss_pred HHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987666678899999999988 67776543 33333444444455555555433333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYW 508 (1361)
Q Consensus 429 l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~ 508 (1361)
+.+.+...+.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++.++++.+...+..........+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (710)
T TIGR03796 305 INVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPT 384 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566777788888888999999999999999999999999999999999988887776655444333332222111
Q ss_pred HHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh----
Q 000671 509 MSP-TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV---- 583 (1361)
Q Consensus 509 ~~p-~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~---- 583 (1361)
... ....++.+++..++.++.+|.+.+++.+.++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 385 ~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~ 464 (710)
T TIGR03796 385 LLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAP 464 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccc
Confidence 111 111122222333333478999999999999999999999999999999999999999999997654322111
Q ss_pred h-hccc-cCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---
Q 000671 584 R-RISL-QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658 (1361)
Q Consensus 584 ~-~~~~-~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--- 658 (1361)
. .... +...+.|+++|++|+|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 465 ~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i 543 (710)
T TIGR03796 465 AAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPR 543 (710)
T ss_pred ccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeH
Confidence 0 0111 2234679999999999864 35799999999999999999999999999999999999999999999987
Q ss_pred ----------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 ----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 ----------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
+|+||||+|+++++||||||.++.+ .+++++.++++.++++++++.+|+|.+|.+||+|.+||||||||
T Consensus 544 ~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQR 623 (710)
T TIGR03796 544 EEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQR 623 (710)
T ss_pred HHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHH
Confidence 4999999999999999999998864 78899999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHh
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
++||||++++|+|+||||||||||+++++++++.+.. .++|+|+|||+++.++.||+|++|++|+|++.|+++|+++
T Consensus 624 iaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 624 LEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999987653 5899999999999999999999999999999999999998
Q ss_pred cCchHHHHH
Q 000671 808 AGTAFEQLV 816 (1361)
Q Consensus 808 ~~~~~~~~~ 816 (1361)
+++.|.+++
T Consensus 701 ~~~~y~~l~ 709 (710)
T TIGR03796 701 VGGAYARLI 709 (710)
T ss_pred cCCcHHHHh
Confidence 888887764
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-65 Score=655.00 Aligned_cols=535 Identities=21% Similarity=0.263 Sum_probs=400.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc--chHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000671 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE--NLQEGLSIVGCLII-TKVVESFTQRHCFFGSRRSGMR 348 (1361)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~--~~~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~r 348 (1361)
.+.+++.++...++.++..++..+.|++...+++.+..... .......+.+++.+ ..++..+....+.+...++..+
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788888999999999999999987643221 11111111111111 1122222222233334444444
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1361)
Q Consensus 349 iR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~-~~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~ 427 (1361)
+| ..+|+|.++.+....++.++|+++|.++.|++.+.+.. ..+..+....+++++++++++..-...+++.++.+
T Consensus 236 lr----~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~ 311 (711)
T TIGR00958 236 IR----EDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINL 311 (711)
T ss_pred HH----HHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44 66677777776554456789999999999999998754 34555666666666666655543222223222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIY 507 (1361)
Q Consensus 428 ~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~ 507 (1361)
.+...+...+.+..++..++.++..++..+...|.++|+++||.|++|+.+.++.++..++-.+..++.....+....+.
T Consensus 312 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (711)
T TIGR00958 312 PLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTT 391 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445567777778888888889999999999999999999999998666555444432222222211111111111
Q ss_pred HHHH--HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhh
Q 000671 508 WMSP--TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR 585 (1361)
Q Consensus 508 ~~~p--~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~ 585 (1361)
.... ..+..+.++++... .+.++.+.+.+.+.++..+..|+..++..+..+.+++++.+||.+|++.++..++...
T Consensus 392 ~~~~~~~~~~il~~g~~lv~-~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~- 469 (711)
T TIGR00958 392 SVLGMLIQVLVLYYGGQLVL-TGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT- 469 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC-
Confidence 1111 11112223333333 4789999999999999999999999999999999999999999999976543221111
Q ss_pred ccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------
Q 000671 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1361)
Q Consensus 586 ~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------- 658 (1361)
..+.+..+.|+++|++|+|++++++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 470 ~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~ 549 (711)
T TIGR00958 470 LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYD 549 (711)
T ss_pred CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC
Confidence 1112234579999999999865556899999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|+||||+|+++++||||||.+|.+ .+++++.++++.++++++++.+|+|.+|.+||+|.+||||||||++||
T Consensus 550 ~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalA 629 (711)
T TIGR00958 550 HHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIA 629 (711)
T ss_pred HHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHH
Confidence 5999999999999999999999965 678899999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCch
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 811 (1361)
||++++|+|+|||||||+||+++++.+.+ ....+++|+|+|||+++.++.+|+|++|++|+|+++|+|+|++++++.
T Consensus 630 RALl~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~ 706 (711)
T TIGR00958 630 RALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGC 706 (711)
T ss_pred HHHhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCc
Confidence 99999999999999999999999999877 223478999999999999999999999999999999999999988777
Q ss_pred HHHH
Q 000671 812 FEQL 815 (1361)
Q Consensus 812 ~~~~ 815 (1361)
|.++
T Consensus 707 y~~l 710 (711)
T TIGR00958 707 YKHL 710 (711)
T ss_pred hHhc
Confidence 7654
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-64 Score=648.43 Aligned_cols=534 Identities=22% Similarity=0.275 Sum_probs=420.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1361)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1361)
++...+.+++.+....++.++..++.++.|++++.+++..-... .....+.+++++++..++..++.....+...+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (694)
T TIGR03375 138 FWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ-AFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGK 216 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667888888888888889999999999999998653221 11222233333333444445544444456678889
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1361)
Q Consensus 348 riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~--~~~~w~~plqi~va~~~L~~~lG~~~l~gl~ 425 (1361)
++...+...+|+|.++++... .+.++|++++.+ .|++.+.++... +..+...+. +++.+++++..-++.+++.++
T Consensus 217 ~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l~ 293 (694)
T TIGR03375 217 KADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGGPLVWVPLV 293 (694)
T ss_pred HHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999998765 567899999999 799999886442 233333333 333344444443444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTV 505 (1361)
Q Consensus 426 v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~ 505 (1361)
++.+.+.+...+.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..++..+...+..........
T Consensus 294 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (694)
T TIGR03375 294 AIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATN 373 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666788888899999999999999999999999999999999999988888777665554444433332222
Q ss_pred HHHHHHHH-HH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh
Q 000671 506 IYWMSPTI-IS-SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1361)
Q Consensus 506 ~~~~~p~~-v~-~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 583 (1361)
+......+ .. ++.++++.+. ++.+|.+.++..+.++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 374 ~~~~~~~~~~~~il~~g~~~v~-~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~ 452 (694)
T TIGR03375 374 FAQFIQQLVSVAIVVVGVYLIS-DGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT 452 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 21111111 11 2223334334 478999999999999999999999999999999999999999999998764322111
Q ss_pred hhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000671 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1361)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----- 658 (1361)
.....+...+.|+++|++|+|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 453 ~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~ 531 (694)
T TIGR03375 453 RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531 (694)
T ss_pred CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 111112234579999999999754 35799999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 --------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
+|+||||+|++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|.+|.+||+|.+||||||||++
T Consensus 532 ~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRla 611 (694)
T TIGR03375 532 IDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVA 611 (694)
T ss_pred CCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 5999999999999999999999986 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
||||++++|++++||||||+||+++++++.+.+ ....+++|+|+|||+++.++.||+|++|++|++++.|+++|+++.
T Consensus 612 lARall~~p~iliLDE~Ts~LD~~te~~i~~~l-~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 612 LARALLRDPPILLLDEPTSAMDNRSEERFKDRL-KRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999998764 445578999999999999999999999999999999999999753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=629.00 Aligned_cols=542 Identities=17% Similarity=0.212 Sum_probs=412.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1361)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR 350 (1361)
.++.+++.++...+..++..++..+.|+++..+++........ .....++..+++..++..++.....+...+++.++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 97 (582)
T PRK11176 19 TIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR-SVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVV 97 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666777777788888888887755432211 111111222222333333433333345567778888
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1361)
Q Consensus 351 ~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~-~~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l 429 (1361)
..+...+|+|.++++...-.+.+.|+++|.++.|++++.+.. ..+..++..++.+++++++++..-++.+++.++++.+
T Consensus 98 ~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l 177 (582)
T PRK11176 98 MTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPI 177 (582)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999998777677889999999999999998743 3344555556666666666554433333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM 509 (1361)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~ 509 (1361)
...+...+.+.+++..++.++..++..+...|.++|+++||.|++|+.+.++.++.-++-.+...+..........+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (582)
T PRK11176 178 VSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQL 257 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556777788888888899999999999999999999999998777666554443222222222211111111111
Q ss_pred -HHHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhcc
Q 000671 510 -SPTII-SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1361)
Q Consensus 510 -~p~~v-~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~ 587 (1361)
..+.. ..+.++++.... +.++.+.+...++++..+..|+..+...+..+.+++.+.+|+.++++.++.++.. ...
T Consensus 258 ~~~~~~~~i~~~g~~~~~~-g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~--~~~ 334 (582)
T PRK11176 258 IASLALAFVLYAASFPSVM-DTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG--KRV 334 (582)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC--CcC
Confidence 11111 222333343444 6899999988888888899999999999999999999999999999765432211 111
Q ss_pred ccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000671 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1361)
Q Consensus 588 ~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------- 658 (1361)
.++..+.|+++|++|+|+++ +.++|+|+|++|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 335 ~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 413 (582)
T PRK11176 335 IERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLA 413 (582)
T ss_pred CCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHH
Confidence 12233469999999999754 35799999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEecCCcCCCCCHHHHhhcCCC--CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 659 ----SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 659 ----~iayv~Q~~~i~~~ti~eni~~g~~--~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
.|+|+||+|.++++|++|||.+|.+ +++++++++++.+++.++++.+|+|.+|.+|++|.+||||||||++|||
T Consensus 414 ~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 414 SLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_pred HHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 4899999999999999999999853 7889999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchH
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 812 (1361)
|++++|++++|||||||||+++++.+++.+. ...+++|+|+|||+++.++.||+|++|++|++++.|++++++++++.|
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l~-~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y 572 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALD-ELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVY 572 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHH-HHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChH
Confidence 9999999999999999999999999887654 445689999999999999999999999999999999999999998889
Q ss_pred HHHHHH
Q 000671 813 EQLVNA 818 (1361)
Q Consensus 813 ~~~~~~ 818 (1361)
+++...
T Consensus 573 ~~l~~~ 578 (582)
T PRK11176 573 AQLHKM 578 (582)
T ss_pred HHHHHH
Confidence 888754
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-63 Score=640.86 Aligned_cols=536 Identities=24% Similarity=0.285 Sum_probs=410.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1361)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR 350 (1361)
.++.+++.++...+..++..++.++.|+++..+++..-... ....-+.+++++++..++..++.....+...+.+.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (708)
T TIGR01193 150 LITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLS 228 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777888889999999999999887543221 11111222333333344444444333455667888888
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1361)
Q Consensus 351 ~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~--~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~ 428 (1361)
..+...+|+|.++++....++.++|+++|.++ |++++.++... +..+...+. +++.+++++..-++-+++.++++.
T Consensus 229 ~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l~~~~ 306 (708)
T TIGR01193 229 IDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWI-LVIVGLFLVRQNMLLFLLSLLSIP 306 (708)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 89999999999999876666788999999998 99998875432 122223333 333333343322222333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 000671 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ----LRKAYGT 504 (1361)
Q Consensus 429 l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~----~~~~~~~ 504 (1361)
+...+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++..++..+.-.+.. ....+..
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (708)
T TIGR01193 307 VYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKA 386 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556788888888999999999999999999999999999999887777665544333222221 2222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhh
Q 000671 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584 (1361)
Q Consensus 505 ~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~ 584 (1361)
++....+ +.++.++++.+. ++.+|.+.+++...++..+..|+..+...+..+.+++++.+|+.++++.++..+....
T Consensus 387 ~~~~~~~--i~il~~g~~lv~-~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~ 463 (708)
T TIGR01193 387 VTKLILN--VVILWTGAYLVM-RGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKK 463 (708)
T ss_pred HHHHHHH--HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence 2222222 112223334334 4789999999999999999999999999999999999999999999976543221111
Q ss_pred hccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000671 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1361)
Q Consensus 585 ~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------ 658 (1361)
....++..+.|+++|++|+|+++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 464 ~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~ 541 (708)
T TIGR01193 464 RTELNNLNGDIVINDVSYSYGYG--SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI 541 (708)
T ss_pred ccCCCCCCCcEEEEEEEEEcCCC--CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHc
Confidence 11112234679999999999743 4799999999999999999999999999999999999999999999998
Q ss_pred -------eEEEEecCCcCCCCCHHHHhhcCC--CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 -------SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 -------~iayv~Q~~~i~~~ti~eni~~g~--~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
+||||||+|++|++||+|||.++. ..+++++.++++.++++++++.+|+|.+|.+|++|.+||||||||++
T Consensus 542 ~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRia 621 (708)
T TIGR01193 542 DRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIA 621 (708)
T ss_pred CHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHH
Confidence 499999999999999999999983 46788999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcC
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
||||++++|++++||||||+||+++++++.+.+.. .+++|+|+|||+++.+..||+|++|++|++++.|+++++++++
T Consensus 622 lARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~--~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~ 699 (708)
T TIGR01193 622 LARALLTDSKVLILDESTSNLDTITEKKIVNNLLN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRN 699 (708)
T ss_pred HHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH--hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcC
Confidence 99999999999999999999999999999887654 3689999999999999999999999999999999999999888
Q ss_pred chHHHHH
Q 000671 810 TAFEQLV 816 (1361)
Q Consensus 810 ~~~~~~~ 816 (1361)
+.|.+++
T Consensus 700 ~~y~~l~ 706 (708)
T TIGR01193 700 GFYASLI 706 (708)
T ss_pred CcHHHHh
Confidence 8887765
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-63 Score=623.61 Aligned_cols=542 Identities=19% Similarity=0.260 Sum_probs=420.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1361)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR 350 (1361)
+.+.+++.+++..++.++..++....|+++..+++..-... ....-+.+++.+++..++..++.....+...+.+.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 86 (571)
T TIGR02203 8 YVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR-DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVV 86 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888899999999999888776432211 11111112222333333344443333345667888888
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1361)
Q Consensus 351 ~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l 429 (1361)
..+...+|+|.++.+....++.+.|++.|.++.|++++.++.. .+..++...+.+++++++++..-++-+++.++++++
T Consensus 87 ~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l 166 (571)
T TIGR02203 87 RDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPV 166 (571)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8888899999999887766778899999999999999987543 344555555556666555554333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM 509 (1361)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~ 509 (1361)
.+.+...+.+..++..++..+..+++.+.++|.++|+++||.++.|+.+.++.++..++..+...+.....+....+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (571)
T TIGR02203 167 LSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQL 246 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445567777888888999999999999999999999999999999887777766665544333332222222221111
Q ss_pred HH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccc
Q 000671 510 SP-TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL 588 (1361)
Q Consensus 510 ~p-~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~ 588 (1361)
.. +...++.+.+..+..++.+|++.+++.+.++..+..|+..+......+.+++++.+|+.++++.++..+... .+.
T Consensus 247 ~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~ 324 (571)
T TIGR02203 247 IASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT--RAI 324 (571)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CCC
Confidence 11 112222223333333478999999999999999999999999999999999999999999997654322111 111
Q ss_pred cCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------
Q 000671 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1361)
Q Consensus 589 ~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------- 658 (1361)
....+.|+++|++|+|++. +.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 325 ~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~ 403 (571)
T TIGR02203 325 ERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLAS 403 (571)
T ss_pred CCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHH
Confidence 1234579999999999764 35799999999999999999999999999999999999999999999988
Q ss_pred ---eEEEEecCCcCCCCCHHHHhhcCC--CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000671 659 ---SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1361)
Q Consensus 659 ---~iayv~Q~~~i~~~ti~eni~~g~--~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1361)
.++|+||+|++|++|+||||.++. +.+++++.++++.|+++++++.+|+|.+|.+|++|.+||||||||++||||
T Consensus 404 ~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 404 LRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARA 483 (571)
T ss_pred HHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 499999999999999999999986 488999999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHH
Q 000671 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1361)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 813 (1361)
++++|+|++||||||+||+++++++.+.+. ...+++|+|+|||+.+.++.||+|++|++|++++.|++++++++++.|.
T Consensus 484 ll~~~~illLDEpts~LD~~~~~~i~~~L~-~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~ 562 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALE-RLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYA 562 (571)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHH-HHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHH
Confidence 999999999999999999999999987664 4457899999999999999999999999999999999999998877777
Q ss_pred HHHH
Q 000671 814 QLVN 817 (1361)
Q Consensus 814 ~~~~ 817 (1361)
++.+
T Consensus 563 ~~~~ 566 (571)
T TIGR02203 563 QLHN 566 (571)
T ss_pred HHHH
Confidence 7654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=625.69 Aligned_cols=539 Identities=23% Similarity=0.317 Sum_probs=407.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCCcchH-HHHHHHHH---HHHHHHHHHHHHHHHH-
Q 000671 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNY----SNRGEENLQ-EGLSIVGC---LIITKVVESFTQRHCF- 339 (1361)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~----~~~~~~~~~-~g~~~~~~---l~~~~~~~~~~~~~~~- 339 (1361)
+-+++..++++....+..+...+.+...|.+-..+... ...+++... ....|+.. +.+...+..+ .++|+
T Consensus 653 ~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~-~q~~~f 731 (1228)
T KOG0055|consen 653 WRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNF-LQHYFF 731 (1228)
T ss_pred HHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34555556666666666677777788888765544332 222222111 11112222 2222222222 24444
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-----HHHHHHHHHHHHHHHHHHHH
Q 000671 340 -FGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-----WFHLTWSLALQLFLAIGVLF 413 (1361)
Q Consensus 340 -~~~~~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-----~~~~~w~~plqi~va~~~L~ 413 (1361)
..+.++..|+|......+.++...+.+.. +++ |.+.+.+++|+..+...+. .+..+-+...-+++++++-
T Consensus 732 ~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~--~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~- 807 (1228)
T KOG0055|consen 732 GIAGEKLTKRLRSMMFRALLRQEVGWFDDP--ENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYG- 807 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCC--ccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 45778899999888777777777777653 456 9999999999987664332 1222222233334444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHH----HHHHHH
Q 000671 414 GVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIE----SRREKE 489 (1361)
Q Consensus 414 ~~lG~~~l~gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~----~~R~~E 489 (1361)
|.+++.+++-.+++++ ..+...+.+.+..++.++..++-.++++|++.|||+||.|+-|+.|.+... ..++.+
T Consensus 808 W~lalv~la~~Pll~~---~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~ 884 (1228)
T KOG0055|consen 808 WRLALVVLATFPLLIL---SGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSS 884 (1228)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333 344457788888999999999999999999999999999999988755443 333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 490 FKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569 (1361)
Q Consensus 490 l~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI 569 (1361)
.+.-.......++...+ .-...++..+.+..++.++..++..+|.++.++..-...+.+.....+.+..|+.|..+|
T Consensus 885 ~~~~~i~gl~f~~sqs~---~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~i 961 (1228)
T KOG0055|consen 885 FKRGLISGLGFGFSQSL---LFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSI 961 (1228)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 33222222222222111 111223334455566777889999999999888877777777777788899999999999
Q ss_pred HHHhcccC-CCCchhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc
Q 000671 570 NAFLLDHE-LNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 570 ~~fL~~~e-~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~ 648 (1361)
.+.++.+. +++++......++-.+.|+++|++|+||.+++.++|+|+||++++|+.+|+|||+||||||.+.+|.++|+
T Consensus 962 F~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd 1041 (1228)
T KOG0055|consen 962 FEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD 1041 (1228)
T ss_pred HHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99998764 54433122223345678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcC-------------eEEEEecCCcCCCCCHHHHhhcCC-CCCHHHHHHHHHHhcchHHHhcCCCCCCcccc
Q 000671 649 KISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGK-PMDKARYDKAIKACALDKDINNFDHGDLTEIG 714 (1361)
Q Consensus 649 ~~~G~v~~~g-------------~iayv~Q~~~i~~~ti~eni~~g~-~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig 714 (1361)
|++|.|.++| +||.|+|+|.+|+.||||||++|. ..+++++.++++....++.+..||+|++|.+|
T Consensus 1042 p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1042 PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVG 1121 (1228)
T ss_pred CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccC
Confidence 9999999998 599999999999999999999993 46889999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCC
Q 000671 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1361)
Q Consensus 715 ~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 794 (1361)
|+|.+||||||||||||||+.+||+||||||.|||||.++++.+ ++.++....|+|.|+|+|+++.+++||.|+|++||
T Consensus 1122 erG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvV-QeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G 1200 (1228)
T KOG0055|consen 1122 ERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVV-QEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNG 1200 (1228)
T ss_pred cccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHH-HHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECC
Confidence 99999999999999999999999999999999999999998864 77788888999999999999999999999999999
Q ss_pred eEEEecChHHHHhcCchHHHHHHHh
Q 000671 795 QITQSGNYQELLLAGTAFEQLVNAH 819 (1361)
Q Consensus 795 ~i~~~g~~~~l~~~~~~~~~~~~~~ 819 (1361)
+|+|+|+|++|++.++.|.+++..+
T Consensus 1201 ~VvE~GtH~~L~~~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1201 KVVEQGTHDELLAKRGIYFRLVQLQ 1225 (1228)
T ss_pred EEEecccHHHHHhCCCchHHHhhhc
Confidence 9999999999999999999987644
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-62 Score=618.68 Aligned_cols=538 Identities=18% Similarity=0.251 Sum_probs=407.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRG-EENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1361)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~-~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1361)
..+.+++.++...++.++..++..+.|+++..+++..... ..+......++.++++..++..++.....+...+.+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (592)
T PRK10790 17 YGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGV 96 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777788888889999999999888854322 111111111222233333444444444445567788888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 000671 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLF---GVVGLGALPGLV 425 (1361)
Q Consensus 350 R~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~-~~~~w~~plqi~va~~~L~---~~lG~~~l~gl~ 425 (1361)
...+...+|+|.++.+.....+.++|+++|.++.|++++.+.... +..+....+.+++++.+++ +.+++..+++++
T Consensus 97 ~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~ 176 (592)
T PRK10790 97 VQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFP 176 (592)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999998776666778999999999999999875443 2233333333333333332 223333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 000671 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY--G 503 (1361)
Q Consensus 426 v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~--~ 503 (1361)
++ +.+.....+..++..++..+..++-.+..+|.++|+++||.|+.|+.+.++..+..++..+...+.....+. .
T Consensus 177 i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (592)
T PRK10790 177 AV---LVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLR 253 (592)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222334456666677777778888888999999999999999999999888877655433321111111111 1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCch
Q 000671 504 TVIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1361)
Q Consensus 504 ~~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 582 (1361)
.......-++ +.++.++++ .. .+.++.+.++..+.++..+..|+..++.....+.++++|.+||.++++.++.+...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~-~~-~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 331 (592)
T PRK10790 254 PLLSLFSALILCGLLMLFGF-SA-SGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN 331 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HH-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 1111111111 111122233 22 36799999999999999999999999999999999999999999999765432211
Q ss_pred hhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----
Q 000671 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1361)
Q Consensus 583 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---- 658 (1361)
.. .....+.|+++|++|+|+++ .++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 332 -~~--~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~ 406 (592)
T PRK10790 332 -DD--RPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS 406 (592)
T ss_pred -Cc--cCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhh
Confidence 11 11234579999999999753 4699999999999999999999999999999999999999999999987
Q ss_pred ---------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 ---------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 ---------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
+|+||||+|.+|++|++|||.++.+.++++..+++++++++++++.+|+|.+|.+|++|.+||||||||++
T Consensus 407 ~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia 486 (592)
T PRK10790 407 SLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486 (592)
T ss_pred hCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 39999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcC
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
||||++++|+|++||||||+||+++++++.+.+. ...+++|+|+|||+++.++.+|+|++|++|++++.|+++|+++++
T Consensus 487 lARaLl~~~~illlDEpts~LD~~t~~~i~~~l~-~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~ 565 (592)
T PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565 (592)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999999977654 445679999999999999999999999999999999999999999
Q ss_pred chHHHHHHHh
Q 000671 810 TAFEQLVNAH 819 (1361)
Q Consensus 810 ~~~~~~~~~~ 819 (1361)
+.|.++.+.+
T Consensus 566 ~~y~~l~~~~ 575 (592)
T PRK10790 566 GRYWQMYQLQ 575 (592)
T ss_pred CHHHHHHHHH
Confidence 9999887654
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-62 Score=616.11 Aligned_cols=541 Identities=21% Similarity=0.268 Sum_probs=411.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNY-SNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1361)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~-~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 348 (1361)
.+.+.+++.+....++.++..++.++.|+++..+++. +.+.+. ..-..+++.+++..++..+......+...+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (576)
T TIGR02204 11 PFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSS--GLLNRYFAFLLVVALVLALGTAARFYLVTWLGER 88 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777778888889999999999998886 322211 1111122222222233333333444566788889
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 000671 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGL 424 (1361)
Q Consensus 349 iR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~---~~lG~~~l~gl 424 (1361)
+...+...+|+|.++.+.....+.+.|+++|.++.|++.+.++.. .+..++...+.+++++++++ +.+++.+++++
T Consensus 89 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 168 (576)
T TIGR02204 89 VVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAV 168 (576)
T ss_pred HHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999877655667889999999999999987643 33343444444444444333 33333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT 504 (1361)
Q Consensus 425 ~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~ 504 (1361)
++ ...+...+.+.+++..++.++..++..+...|.++|+++||.+++|+.+.++.++..++..+..++.........
T Consensus 169 ~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (576)
T TIGR02204 169 PL---VLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLT 245 (576)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222233467778888888899999999999999999999999999999877776655544433332222211111
Q ss_pred HHH-HHHHHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCch
Q 000671 505 VIY-WMSPTII-SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1361)
Q Consensus 505 ~~~-~~~p~~v-~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~ 582 (1361)
.+. .+..... ....++++.... +.++.+.+++...++..+..|+..++..+..+.+++++++||.++++.++..+..
T Consensus 246 ~~~~~~~~~~~~~~~~~g~~~v~~-g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 246 AIVIVLVFGAIVGVLWVGAHDVIA-GKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 111 1111111 222233333343 7899999999999999999999999999999999999999999999765421111
Q ss_pred hhhc-cccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---
Q 000671 583 VRRI-SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658 (1361)
Q Consensus 583 ~~~~-~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--- 658 (1361)
.... ...+..+.|+++|++|+|++++++++|+|+||+++|||.++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 325 ~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i 404 (576)
T TIGR02204 325 AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL 404 (576)
T ss_pred CCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEH
Confidence 1111 111123569999999999864446799999999999999999999999999999999999999999999987
Q ss_pred ----------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 ----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 ----------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.++|+||+|+++++|++|||.++.+ .++++..++++.+++.++++.+|+|.+|.+|++|.+||||||||
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qr 484 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQR 484 (576)
T ss_pred HhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHH
Confidence 4999999999999999999999875 57788999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHh
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
++||||++++|++++||||||+||+++++.+++.+. ...+++|+|++||+++.++.+|+|++|++|++++.|+++++.+
T Consensus 485 l~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~-~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 485 IAIARAILKDAPILLLDEATSALDAESEQLVQQALE-TLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHH-HHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 999999999999999999999999999998877654 4457899999999999999999999999999999999999998
Q ss_pred cCchHHHHHH
Q 000671 808 AGTAFEQLVN 817 (1361)
Q Consensus 808 ~~~~~~~~~~ 817 (1361)
+++.|.++..
T Consensus 564 ~~~~~~~l~~ 573 (576)
T TIGR02204 564 KGGLYARLAR 573 (576)
T ss_pred cCChHHHHHh
Confidence 8888887654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=608.84 Aligned_cols=540 Identities=21% Similarity=0.255 Sum_probs=403.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN-RGEE--NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1361)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~-~~~~--~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1361)
+.+.+++.+++..++.++..++..+.|.++..+++-.. .+.. .....+..++++++..++..++.....+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777788888888999999999999887431 2110 00111111222323333444444334456678888
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 000671 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPG 423 (1361)
Q Consensus 348 riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~---~~lG~~~l~g 423 (1361)
++...+...+|+|.++++....++.++|++++.++.|++++.++.. .+..+....+.+++++++++ +.+++.++++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988776778899999999999999998654 33444444455544444443 3344433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG 503 (1361)
Q Consensus 424 l~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~ 503 (1361)
++++.+.+ ...+.+..++..++..+..++..+.+.|.++|+++||.|+.|+.+.++.++..++-.+.-.+.....+..
T Consensus 170 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 170 LLLLLLLL--PLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222222 2345666777788888888999999999999999999999999887777665544333222222222211
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc
Q 000671 504 TV-IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRS-MGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1361)
Q Consensus 504 ~~-~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~-l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 581 (1361)
.. ...+....+.++.+.+..+.. +.++.+..++.+.+... ...|+..++..+..+.++++|.+||.++++.++..+.
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~~~-g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGGVG-GNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 11 111112222222333333343 67788876665555433 3468888899999999999999999999976532111
Q ss_pred hhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---
Q 000671 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658 (1361)
Q Consensus 582 ~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--- 658 (1361)
.. ........+.|+++|++|+|+++ ++++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 327 ~~-~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i 404 (574)
T PRK11160 327 PT-TSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPI 404 (574)
T ss_pred Cc-ccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEh
Confidence 10 11111234579999999999754 24799999999999999999999999999999999999999999999987
Q ss_pred ----------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 ----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 ----------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.|+||||+|+++++|++|||.++.+ .++++..++++.++++++++. |+|.+|.+||+|.+||||||||
T Consensus 405 ~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 405 ADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred hhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHH
Confidence 3999999999999999999999875 678899999999999999999 9999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHh
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
++||||++++|++++||||||+||+++++.+.+.+. ...+++|+|++||+++.++.||+|++|++|++++.|+++|+++
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~-~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLA-EHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999887654 4457899999999999999999999999999999999999999
Q ss_pred cCchHHHHHH
Q 000671 808 AGTAFEQLVN 817 (1361)
Q Consensus 808 ~~~~~~~~~~ 817 (1361)
+++.|.++.+
T Consensus 563 ~~g~y~~l~~ 572 (574)
T PRK11160 563 QQGRYYQLKQ 572 (574)
T ss_pred cCcHHHHHHh
Confidence 9998888754
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-61 Score=608.25 Aligned_cols=535 Identities=18% Similarity=0.254 Sum_probs=403.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1361)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~ 351 (1361)
.+.+++.+....+..++..++..+.|+++..+++.+.... .... ++..+++..++..+......+...++..++|.
T Consensus 14 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK13657 14 LGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-DIFP---LLAAWAGFGLFNIIAGVLVARHADRLAHRRRL 89 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777888888899999999998888654321 1111 11111111122222222223445677788888
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 000671 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLF 427 (1361)
Q Consensus 352 ~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~---~~lG~~~l~gl~v~ 427 (1361)
.+...+|+|.++++.....+.+.|++++.++.|++.+.+... .+.......+..++.+++++ +.+++..++ ++
T Consensus 90 ~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~---~~ 166 (588)
T PRK13657 90 AVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVV---LG 166 (588)
T ss_pred HHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 899999999999987766778899999999999998865422 22222222222222222222 223333332 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000671 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR----REKEFKWLSEAQLRKAYG 503 (1361)
Q Consensus 428 ~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~----R~~El~~l~~~~~~~~~~ 503 (1361)
++...+...+.+..++.+++.++..++..+...|.++|+++||.|+.|+.+.++..+. ++.+.+..+.........
T Consensus 167 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK13657 167 IVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLN 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345566777888888888999999999999999999999999998766555443 333333222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh
Q 000671 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1361)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 583 (1361)
.+.... ..+.+..++++.+. ++.+|.+.+++++.++..+..|+..+...+..+.+++.+++|+.+++..++..++..
T Consensus 247 ~~~~~~--~~~~~~~~g~~~v~-~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 323 (588)
T PRK13657 247 RAASTI--TMLAILVLGAALVQ-KGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPP 323 (588)
T ss_pred HHHHHH--HHHHHHHHHHHHHH-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 111111 11222233444444 478999999999999999999999999999999999999999999987643221111
Q ss_pred hhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000671 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1361)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----- 658 (1361)
...+.+..++.|+++|++|+|+++ +++|+|+|+++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~ 401 (588)
T PRK13657 324 GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRT 401 (588)
T ss_pred CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhh
Confidence 111111223479999999999743 4699999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 --------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
.|+|+||+|+++++|+||||.++++ .++++..++++.+++.+.++.+|+|.+|.+|++|.+||||||||++
T Consensus 402 ~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRia 481 (588)
T PRK13657 402 VTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLA 481 (588)
T ss_pred CCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHH
Confidence 5999999999999999999999965 6788899999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcC
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
||||++++|++++||||||+||+++++.+++.+.. ..+++|+|+|||+++.++.+|+|++|++|++++.|+++++++.+
T Consensus 482 lARall~~~~iliLDEpts~LD~~t~~~i~~~l~~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~ 560 (588)
T PRK13657 482 IARALLKDPPILILDEATSALDVETEAKVKAALDE-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARG 560 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCC
Confidence 99999999999999999999999999999876643 45689999999999999999999999999999999999999888
Q ss_pred chHHHHHHHh
Q 000671 810 TAFEQLVNAH 819 (1361)
Q Consensus 810 ~~~~~~~~~~ 819 (1361)
+.|.++....
T Consensus 561 ~~y~~l~~~~ 570 (588)
T PRK13657 561 GRFAALLRAQ 570 (588)
T ss_pred ChHHHHHHHh
Confidence 8888887643
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-61 Score=606.14 Aligned_cols=526 Identities=21% Similarity=0.268 Sum_probs=399.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000671 287 LLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSS 366 (1361)
Q Consensus 287 ~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~~~Iy~K~L~ls~ 366 (1361)
++..++..+.|+++..+++............+.+++.+++..++..++.....+...+.+.++...+...+|+|.++++.
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 45556677889999998886543211112222333344444444444443333455667888888888999999999887
Q ss_pred ccCCCCCHHHHHHHHHhHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 367 LGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLG-ALPGLVLFLICGLLNVPFAKILQKC 444 (1361)
Q Consensus 367 ~~~~~~~~G~ivNlms~D~~ri~~~~-~~~~~~w~~plqi~va~~~L~~~lG~~-~l~gl~v~~l~~~l~~~~~~~~~~~ 444 (1361)
....+.++|+++|.++.|++.+.... ..+..++..++.+++++++++..++|. +++.++++.+...+...+.+.+.+.
T Consensus 85 ~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 85 EFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667789999999999999997643 334555555555555544443334442 2333333333333344456666777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 445 QSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRRE----KEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFL 520 (1361)
Q Consensus 445 q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~----~El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~ 520 (1361)
.++.++..++..+.+.|.++|+++||.|++|+.+.++..+..+ .+.+..+.............. ....++.++
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~ 241 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIG---MANLLAIGG 241 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 7777777788889999999999999999999987666655333 333322222111111111111 111112222
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCcEEEEee
Q 000671 521 GCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEG 600 (1361)
Q Consensus 521 ~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~ 600 (1361)
+..++.++.+|.+.+++.+.++..+..|+..++..+..+.+++++.+||.++++.++..+... .+.+..++.|+++|+
T Consensus 242 g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~--~~~~~~~~~I~~~~v 319 (569)
T PRK10789 242 GSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS--EPVPEGRGELDVNIR 319 (569)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC--CCCCCCCCcEEEEEE
Confidence 333333478999999999999999999999999999999999999999999997653221111 111123457999999
Q ss_pred EEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEecCC
Q 000671 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTS 667 (1361)
Q Consensus 601 ~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~iayv~Q~~ 667 (1361)
+|+|+.+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|+|
T Consensus 320 ~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 398 (569)
T PRK10789 320 QFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTP 398 (569)
T ss_pred EEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCC
Confidence 9999854 35799999999999999999999999999999999999999999999987 389999999
Q ss_pred cCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000671 668 WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1361)
Q Consensus 668 ~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1361)
+++++|++|||.++.+ .++++++++++.+++.+++..+|+|.+|.+|++|.+||||||||++||||++++|+++|||||
T Consensus 399 ~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEp 478 (569)
T PRK10789 399 FLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDA 478 (569)
T ss_pred eeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 9999999999999864 678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHHHHHh
Q 000671 747 FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819 (1361)
Q Consensus 747 ~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 819 (1361)
||+||+++++++.+.+.. ..+++|+|++||+++.++.+|+|++|++|++++.|++++++++++.|.++.+.+
T Consensus 479 ts~LD~~~~~~i~~~l~~-~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 479 LSAVDGRTEHQILHNLRQ-WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred cccCCHHHHHHHHHHHHH-HhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 999999999999876543 457899999999999999999999999999999999999999888888877543
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-63 Score=593.96 Aligned_cols=467 Identities=23% Similarity=0.295 Sum_probs=390.4
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CC--chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP----KI--TSGILIGVYAGVSTASAVFVYFRSFFA 959 (1361)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~----~~--~~~~~l~iy~~l~~~~~i~~~~~~~~~ 959 (1361)
++..+.|.+.... .+..+.++.++.....+..|++++..++.- .. .......+..++.++++++.+++.+++
T Consensus 135 ~~rl~~l~~~~~~--~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 135 LKRLLGLLKPEWK--WLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred HHHHHHHhchhHH--HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666654333 333333333444445666677666544321 10 111234556677788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000671 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1361)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l 1039 (1361)
.+.+.+...++|..+|++++|+.++|||.+.+|+|+||+++|...+...++..+...+.+.++.++.++.|++.+|.+.+
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltl 292 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTL 292 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000671 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1361)
Q Consensus 1040 v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1361)
+.+..+++...+.++|.+..|++.+..+++-+.......|.+++++|||+|+.|++..++|.+.+++..+...+......
T Consensus 293 v~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~ 372 (716)
T KOG0058|consen 293 VTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYG 372 (716)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 98888888888899999999999999999999999999999999999999999999999999999887766654444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC
Q 000671 1120 WLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP 1198 (1361)
Q Consensus 1120 wl~~rl~~l~~l~~~~~~~~-~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~ 1198 (1361)
.+.-..++.+++..+.+... +.++..|.+++|.+..++.|...+...+.++...++++-+++.|.+|++||+|.+|.-+
T Consensus 373 ~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~ 452 (716)
T KOG0058|consen 373 IFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIP 452 (716)
T ss_pred HhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCC
Confidence 44444455555555444444 46677899999999999999999999999999999999999999999999999877654
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEEEEe--CCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEE
Q 000671 1199 AIVEDKRPPSSWPFKGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276 (1361)
Q Consensus 1199 ~~~~~~~~~~~wp~~G~I~f~nVs~~Y--~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~I 1276 (1361)
.. +...|. ..+|.|+|+||+|+| ||+. +||||+||+|+|||+||+||||||||||++++|.|||||++|+|++
T Consensus 453 ~~--G~~~p~--~~~G~IeF~~VsFaYP~Rp~~-~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 453 LT--GTLAPD--HLQGVIEFEDVSFAYPTRPDV-PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILL 527 (716)
T ss_pred CC--Cccccc--cccceEEEEEeeeecCCCCCc-hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 32 222222 578999999999999 4444 4999999999999999999999999999999999999999999999
Q ss_pred cCeeCCCCChHHHhhcCceecCcccccccchhhhcCCC-CCCCHHHHHHHHhhCc---CCCCCCcccccCCchhhhhhcc
Q 000671 1277 DGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKVSQLTP---NSRNSRIDIDFPTFNKFCCRII 1352 (1361)
Q Consensus 1277 DGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~-~~~sDeeI~~AL~~~~---~~~~~~~~~~~~~~~~~~~~~~ 1352 (1361)
||+||++++.+.||++|++|.|||+||+|||||||... ...+||||.+|.++|+ .-.+---|-|+.++|+|+-+|.
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 99999999999999999999999999999999999632 2689999999999984 2234444677888999999999
Q ss_pred cccccee
Q 000671 1353 KTKQLVT 1359 (1361)
Q Consensus 1353 ~~~~~~~ 1359 (1361)
||||++.
T Consensus 608 GQKQRIA 614 (716)
T KOG0058|consen 608 GQKQRIA 614 (716)
T ss_pred hHHHHHH
Confidence 9999974
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=614.27 Aligned_cols=543 Identities=21% Similarity=0.232 Sum_probs=414.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1361)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1361)
..++.+++.+....+..++..++.++.|+++..+++.+-... +....+.+++++++..++..++.....+...+++.++
T Consensus 132 ~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~-~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (694)
T TIGR01846 132 PAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHR-GLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRI 210 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777778888888899999999999888553211 1122223333334444444554444445666788899
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1361)
Q Consensus 350 R~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~ 428 (1361)
...+...+|+|.++++...-.+.++|+++|.+ .|++.+.++.. .+.......+.+++.+++++..-++-+++.+++++
T Consensus 211 ~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 289 (694)
T TIGR01846 211 DVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLV 289 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987766778999999999 69999987643 22222222222333333333332222333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYW 508 (1361)
Q Consensus 429 l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~ 508 (1361)
+...+...+.+.+++..++.++..+++.+.+.|.++|+++||.++.|+.+.++.++.-++..+...+.............
T Consensus 290 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR01846 290 CYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIE 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445667777888888888999999999999999999999999988777766554443333332222222211111
Q ss_pred HHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhcc
Q 000671 509 MSP-TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1361)
Q Consensus 509 ~~p-~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~ 587 (1361)
... ....++.+.+..++..+.+|.+.+.+...+...+..|+..+...+..+.+++++++|+.++++.++..+.. ....
T Consensus 370 ~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~~ 448 (694)
T TIGR01846 370 LIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLAA 448 (694)
T ss_pred HHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCCC
Confidence 111 11122223333333347899999999999999999999999999999999999999999999765432211 1111
Q ss_pred ccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000671 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1361)
Q Consensus 588 ~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------- 658 (1361)
.+..++.|+++|++|+|+++ ++++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 449 ~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~ 527 (694)
T TIGR01846 449 LPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPA 527 (694)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHH
Confidence 12234679999999999754 34699999999999999999999999999999999999999999999988
Q ss_pred ----eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000671 659 ----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1361)
Q Consensus 659 ----~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1361)
.|+||||+|.++++|++|||.++.+ .++++..++++.+++.++++.+|+|.+|.+|++|.+||||||||++||||
T Consensus 528 ~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 528 WLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARA 607 (694)
T ss_pred HHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHH
Confidence 3899999999999999999999865 67889999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHH
Q 000671 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1361)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 813 (1361)
++++|+++|||||||+||+++++.+.+.+.. ..+++|+|++||+++.++.||+|++|++|++++.|++++++++++.|.
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~ 686 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMRE-ICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYA 686 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHH-HhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHH
Confidence 9999999999999999999999999876644 457899999999999999999999999999999999999999988898
Q ss_pred HHHH
Q 000671 814 QLVN 817 (1361)
Q Consensus 814 ~~~~ 817 (1361)
++.+
T Consensus 687 ~l~~ 690 (694)
T TIGR01846 687 RLWQ 690 (694)
T ss_pred HHHH
Confidence 8865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-61 Score=601.64 Aligned_cols=502 Identities=19% Similarity=0.248 Sum_probs=372.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1361)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~ 351 (1361)
.+.+++.++...++.++..++..+.|+++..+++........... +.++.++++..++..+......+...+.+.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (529)
T TIGR02868 8 LQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPPVLYL-SVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLG 86 (529)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777788888889999999999988754322111111 1111111122233333333333455677888888
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 000671 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLF 427 (1361)
Q Consensus 352 ~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~-~~~~w~~plqi~va~~~L~---~~lG~~~l~gl~v~ 427 (1361)
.+...+|+|.++++.....+.++|+++|.++.|++++.+.... +..+....+.+++++++++ +.+++.++++++++
T Consensus 87 ~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~ 166 (529)
T TIGR02868 87 RLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLA 166 (529)
T ss_pred HHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8899999999999887777889999999999999999886543 3333344444444444433 33444433333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIY 507 (1361)
Q Consensus 428 ~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~ 507 (1361)
.++.+ ....+..++..++..+..++..+..+|.++|+++||.|++|+.+.++.++..++..+...+.....+....+.
T Consensus 167 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (529)
T TIGR02868 167 GFVAP--LVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQ 244 (529)
T ss_pred HHHHH--HHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 1223334555666778889999999999999999999999999988887766654444333332222222222
Q ss_pred HHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhh-
Q 000671 508 WMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR- 585 (1361)
Q Consensus 508 ~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~- 585 (1361)
.....+ ...+.+.+..++.++.++.+.+.+.+.+...+..|+..++..+..+.++++|.+|+.++++.++..++....
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~ 324 (529)
T TIGR02868 245 LLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPA 324 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC
Confidence 111111 112222232333347899999998888889999999999999999999999999999999765432111000
Q ss_pred -ccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000671 586 -ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1361)
Q Consensus 586 -~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------ 658 (1361)
.......+.|+++|++|+|+++ +++|+|+||++++||+++|+||+|||||||+++|+|+++|++|+|.++|
T Consensus 325 ~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~ 402 (529)
T TIGR02868 325 AGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL 402 (529)
T ss_pred CcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH
Confidence 0011123569999999999754 3699999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+||||||+|++|++||||||.+|.+ .+++++.++++.++++++++.+|+|.+|.|||+|.+||||||||++||
T Consensus 403 ~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiA 482 (529)
T TIGR02868 403 QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALA 482 (529)
T ss_pred HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHH
Confidence 7999999999999999999999875 688999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCc
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 779 (1361)
||++++|+|++|||||||||+++++.|.+.+. ...+++|+|+|||++
T Consensus 483 Rall~~~~iliLDE~TSaLD~~te~~I~~~l~-~~~~~~TvIiItHrl 529 (529)
T TIGR02868 483 RALLADAPILLLDEPTEHLDAGTESELLEDLL-AALSGKTVVVITHHL 529 (529)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEecCC
Confidence 99999999999999999999999999987664 456789999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=601.77 Aligned_cols=533 Identities=24% Similarity=0.331 Sum_probs=404.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1361)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~ 354 (1361)
++ .+....++.++..++....|.++..+++.......... .+...+++..++..++.....+...+.+.++...+.
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELL---ELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 77777788888889999999999988876541111111 111122222222333333334445556678888888
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 000671 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWF-HLTWSLALQLFLAIGVLF---GVVGLGALPGLVLFLIC 430 (1361)
Q Consensus 355 ~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~-~~~w~~plqi~va~~~L~---~~lG~~~l~gl~v~~l~ 430 (1361)
..+|+|.++++....+++..|++++.++.|++.+....... ..+-..++.++..+++++ +.+++..+.+++++.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~-- 166 (567)
T COG1132 89 RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLA-- 166 (567)
T ss_pred HHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--
Confidence 99999999998766677789999999999999998866543 222223333333333333 223333333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000671 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG-TVIYWM 509 (1361)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~-~~~~~~ 509 (1361)
.....+.++.++..++..+..++..+.+.|.++|+++||.|+.|+...++.++..++..+.-.+.....+.. ......
T Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 167 -LVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334555677888888888999999999999999999999998765555444333322211111111111 111222
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhcccc
Q 000671 510 SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQ 589 (1361)
Q Consensus 510 ~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~ 589 (1361)
..+....+.+.+......+.++.+.+.+.+.++..+..|+..+...+..+.++..|.+|+.++++.++.-.+.... ..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~ 323 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LK 323 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CC
Confidence 2222222333333333346799999999999999999999999999999999999999999999875432111110 12
Q ss_pred CCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------
Q 000671 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658 (1361)
Q Consensus 590 ~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----------- 658 (1361)
...+.|+++|++|+|++ ++++|+|+||++++||.+|||||+|||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 324 DTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred CCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence 34467999999999985 34799999999999999999999999999999999999999999999987
Q ss_pred --eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 659 --SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 659 --~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+||||||+|++|++||+|||.+|++ .++++..++++.++++++++.+|+|.+|.+||+|.+||||||||++||||++
T Consensus 402 r~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 402 RKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred HHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 4999999999999999999999988 6888999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHH
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 815 (1361)
++|+|++||||||+||+++++.|.+.+. ...++||+|+|+|+++.+.+||+|+||++|+|++.|+|+||+++++.|.++
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~-~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l 560 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALK-KLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARL 560 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHH-HHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHH
Confidence 9999999999999999999999987665 344789999999999999999999999999999999999999999999998
Q ss_pred HHHh
Q 000671 816 VNAH 819 (1361)
Q Consensus 816 ~~~~ 819 (1361)
.+.+
T Consensus 561 ~~~~ 564 (567)
T COG1132 561 YQAQ 564 (567)
T ss_pred HHHh
Confidence 8654
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-60 Score=598.99 Aligned_cols=519 Identities=20% Similarity=0.225 Sum_probs=398.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1361)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~ 354 (1361)
+++.++...++.++..++..+.|+++..+++..-... +...-+.+++.+++..++..++.....+...+.+.++...+.
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 4 NKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSG-SVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777888888999999999999988543211 111222333344444555555555555667788999999999
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHH--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 000671 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLA--IGVLFGVVGLGALPGLVLFLIC 430 (1361)
Q Consensus 355 ~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~--~~~~w~~plqi~va--~~~L~~~lG~~~l~gl~v~~l~ 430 (1361)
..+|+|.++++.. ..+...+.+..|++++.+.... +..+...++.++.+ ++.+.+.+++.+++++++++
T Consensus 83 ~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~-- 155 (544)
T TIGR01842 83 QPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAVVLV-- 155 (544)
T ss_pred HHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--
Confidence 9999999998752 2345677788999999875432 33334444433322 22223444544444433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMS 510 (1361)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~ 510 (1361)
.+.....+..++..++.++..+++.+.++|.++|+++||.|++|+.+.++.++..++..+...+.....+....+....
T Consensus 156 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 156 -GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred -HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333456677777888899999999999999999999999999999988887766655444433333222222211111
Q ss_pred HHH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccc
Q 000671 511 PTI--ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL 588 (1361)
Q Consensus 511 p~~--v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~ 588 (1361)
..+ +..+.++++. ..++.+|++.+++.+.++..+..|+..++..+..+.+++++.+|+.++++.++..++. .+.
T Consensus 235 ~~~~~~~~~~~g~~l-~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~ 310 (544)
T TIGR01842 235 RIVLQSLVLGLGAYL-AIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPL 310 (544)
T ss_pred HHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCC
Confidence 111 1222333333 3347899999999999999999999999999999999999999999999765432211 111
Q ss_pred cCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------
Q 000671 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1361)
Q Consensus 589 ~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------- 658 (1361)
+..++.++++|++|+|+++ ++++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 311 ~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 311 PEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389 (544)
T ss_pred CCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH
Confidence 2233579999999999753 34799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 659 ---SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 659 ---~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
.++|+||+|+++++|++|||.++.+ .+++++.++++.++++++++.+|+|.+|.+|++|.+||||||||++||||+
T Consensus 390 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARal 469 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL 469 (544)
T ss_pred HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHH
Confidence 4999999999999999999986654 788899999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHh
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
+++|+++|||||||+||+++++.+.+.+.....+++|+|++||+++.+..||+|++|++|++++.|+++++++
T Consensus 470 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 470 YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred hcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999988765444346899999999999988899999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-59 Score=590.52 Aligned_cols=535 Identities=18% Similarity=0.240 Sum_probs=403.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1361)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~ 351 (1361)
++.+++.++...++.++..++..+.|+++..+++.....+. . ..++...++..++..+......+...++..++|.
T Consensus 14 l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (585)
T TIGR01192 14 LNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-V---LPTLALWAGFGVFNTIAYVLVAREADRLAHGRRA 89 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777788888888999999999999999986543221 1 1111111112222233222233456678888898
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 000671 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLF 427 (1361)
Q Consensus 352 ~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~---~~lG~~~l~gl~v~ 427 (1361)
.+...+|+|.++++....++.++|++++.++.|++.+.++.. .+.......+.+++++++++ +.+++.+++ ++
T Consensus 90 ~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~---~~ 166 (585)
T TIGR01192 90 TLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMV---LG 166 (585)
T ss_pred HHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 899999999999987766677899999999999999876543 33333444444444433333 223332222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000671 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREK----EFKWLSEAQLRKAYG 503 (1361)
Q Consensus 428 ~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~----El~~l~~~~~~~~~~ 503 (1361)
.+...+...+.+..++.+++..+..++..+.+.|.++|+++||.|+.|+.+.++.++..++ +.+..+.........
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (585)
T TIGR01192 167 ILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLN 246 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223334455666777777778888889999999999999999999998877666554433 222222221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh
Q 000671 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1361)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~ 583 (1361)
.++..... +.+..++++.+. ++.++.+.+++.+.++..+..|+..+...+..+.+++.+++|+.++++.++..++..
T Consensus 247 ~~~~~~~~--~~v~~~g~~~v~-~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 323 (585)
T TIGR01192 247 RMASTISM--MCILVIGTVLVI-KGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPA 323 (585)
T ss_pred HHHHHHHH--HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCc
Confidence 11111111 112223333333 478999999999999999999999999999999999999999999987643221111
Q ss_pred hhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000671 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1361)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----- 658 (1361)
.....+...+.++++|++|+|+++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 401 (585)
T TIGR01192 324 DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINT 401 (585)
T ss_pred cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhh
Confidence 111111223469999999999753 3689999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 --------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
.++|+||+|+++++|++|||.++.+ .++++..++++.+++.+.+..+|+|.+|.+|++|.+||||||||++
T Consensus 402 ~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~ 481 (585)
T TIGR01192 402 VTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLA 481 (585)
T ss_pred CCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHH
Confidence 4899999999999999999999865 5677888999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcC
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
||||++++|++++||||||+||+++++.+.+.+. ...+++|+|++||+++.++.||+|++|++|++++.|+++++.+++
T Consensus 482 lARall~~p~ililDEpts~LD~~~~~~i~~~l~-~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 560 (585)
T TIGR01192 482 IARAILKNAPILVLDEATSALDVETEARVKNAID-ALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD 560 (585)
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH-HHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCC
Confidence 9999999999999999999999999999876554 445789999999999999999999999999999999999999998
Q ss_pred chHHHHHHHh
Q 000671 810 TAFEQLVNAH 819 (1361)
Q Consensus 810 ~~~~~~~~~~ 819 (1361)
+.|.++...+
T Consensus 561 ~~y~~l~~~~ 570 (585)
T TIGR01192 561 GRFYKLLRRS 570 (585)
T ss_pred ChHHHHHHhC
Confidence 8888887543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=553.25 Aligned_cols=527 Identities=23% Similarity=0.302 Sum_probs=407.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 283 AICALLRTIAVVVGPLLLYAFVN-YSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQ 361 (1361)
Q Consensus 283 ~~~~~~~~~~~~~~P~ll~~~i~-~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~~~Iy~K~ 361 (1361)
.++.++..+....+-.++-..++ .+... ....-+.++++++++.++.+++...--...++.+.++|..+...+++|.
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~--~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQ--LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544443 22221 1222233455566666677776655556678899999999999999999
Q ss_pred hcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 362 LKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFH---LTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPF 437 (1361)
Q Consensus 362 L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~---~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l~~~l~~~~ 437 (1361)
.++....-+..++|++++++..-++.+..+.. |+. ..-..|+-+.++++...|.-|.-.+..++.+.+++ +.+
T Consensus 84 ~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfM---ilv 160 (559)
T COG4988 84 AKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFM---ILV 160 (559)
T ss_pred HhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHH
Confidence 99998777778899999999988888776433 332 22335666666666666655544444333333332 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 438 AKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFK----SLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTI 513 (1361)
Q Consensus 438 ~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~----~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~ 513 (1361)
++..++..+++++....=-..--+-|+|+.++|.|+-.+... +.-++.|+.-|+.||-.....+..-++...+ +
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~ls--i 238 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLS--I 238 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 566666677777766666667778899999999999865554 4456788888888876554444433332222 1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhh-ccccCCC
Q 000671 514 ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR-ISLQKSD 592 (1361)
Q Consensus 514 v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~-~~~~~~~ 592 (1361)
...+.+.+..+.+.++++-..+|.++-+---.-.|++.+...+..-.++..+.+.+..|++.+..+.+.... .....+.
T Consensus 239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~ 318 (559)
T COG4988 239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP 318 (559)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence 222334555555524889888888888877778899999999999999999999999999887765432221 1112233
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ 659 (1361)
..+..+|.+|.|++++ ++++|+||++++|++++|+|+||||||||+++|+|+.+|++|+|.++| +
T Consensus 319 ~ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 319 IEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred ceeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 4455569999998753 799999999999999999999999999999999999999999999997 4
Q ss_pred EEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 000671 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 660 iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1361)
++||+|+|.++++|+||||+++++ .+++...++++..++.+.++. |+|-+|.|||+|.+|||||+||++||||+++++
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999988 668899999999999999999 999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHHHHH
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1361)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 818 (1361)
++|||||||++||+++++.|.+. +....++||+|++||+++.+.++|+|++|++|+++++|+|+++.++++.|.+++.+
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~~-l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~ 554 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQA-LQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQ 554 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHHH-HHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHH
Confidence 99999999999999999988765 45556789999999999999999999999999999999999999999999999876
Q ss_pred hh
Q 000671 819 HR 820 (1361)
Q Consensus 819 ~~ 820 (1361)
+.
T Consensus 555 q~ 556 (559)
T COG4988 555 QE 556 (559)
T ss_pred Hh
Confidence 43
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-59 Score=589.09 Aligned_cols=505 Identities=22% Similarity=0.281 Sum_probs=385.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 276 LKENIFIAICALLRTIAVVVGPLLLYAFVNYSN-RGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1361)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~-~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~ 354 (1361)
|+.++...++.++..++..+.|+++..+++... ... ....-+.+++++++..++..++.....+...+++.++...+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGE-PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777888888999999999999998653 221 112222233333344444555444445566778888888888
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 000671 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLFLIC 430 (1361)
Q Consensus 355 ~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~---~~lG~~~l~gl~v~~l~ 430 (1361)
..+|+|.++++.....+.++|+++|.++.|++++.++.. .+..+....+.+++++++++ +.+++..+++++++++
T Consensus 81 ~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~- 159 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI- 159 (529)
T ss_pred HHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-
Confidence 999999999877666778999999999999999987543 34555555555544444443 3444443333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000671 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREK----EFKWLSEAQLRKAYGTVI 506 (1361)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~----El~~l~~~~~~~~~~~~~ 506 (1361)
+...+.+..++..++.++..+++.+.+.|.++|+++||.|++|+.+.++.++.-++ ..+..+..........++
T Consensus 160 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02857 160 --FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF 237 (529)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345667777778888889999999999999999999999999887777554333 222222211111111111
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhc
Q 000671 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1361)
Q Consensus 507 ~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~ 586 (1361)
..... +....++++.+. .+.+|.+.+++.+.+...+..|+..+...+..+.+++++.+|+.++++.++.+.+.. ..
T Consensus 238 ~~~~~--~~~~~~~~~~~~-~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~-~~ 313 (529)
T TIGR02857 238 ATLSV--ALVAVYIGFRLL-AGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA-PV 313 (529)
T ss_pred HHHHH--HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-CC
Confidence 11111 111223444444 468999999999999999999999999999999999999999999997543221111 11
Q ss_pred cccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------
Q 000671 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1361)
Q Consensus 587 ~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------- 658 (1361)
.....+.|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 314 -~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~ 391 (529)
T TIGR02857 314 -TAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA 391 (529)
T ss_pred -CCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCH
Confidence 11123479999999999854 34799999999999999999999999999999999999999999999987
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
+++||+|+|+++++||+|||.++.+ .++++..++++.+++.++++.+|+|.+|.+|++|.+||||||||++|||
T Consensus 392 ~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laR 471 (529)
T TIGR02857 392 DSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALAR 471 (529)
T ss_pred HHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHH
Confidence 3999999999999999999999865 6788999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEE
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1361)
|++++|++++||||||+||+++++.+++.+. ...+++|+|+|||+++.++.||+|++|
T Consensus 472 al~~~~~ililDE~ts~lD~~~~~~i~~~l~-~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 472 AFLRDAPLLLLDEPTAHLDAETEALVTEALR-ALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHH-HhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999987654 445789999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-59 Score=631.72 Aligned_cols=543 Identities=19% Similarity=0.205 Sum_probs=382.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 273 NVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSA 352 (1361)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~ 352 (1361)
+.+++.+++..++.++..++..+.|+++..+++-+-+.......+..+++.+++..++..++.....|...+++.++-..
T Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~ 900 (1466)
T PTZ00265 821 FSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKT 900 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455577777777778888888888888887633221110111222222222222333333222233445667777777
Q ss_pred HHHHHHHHHhcCCcccC--CCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 353 LMVAVYQKQLKLSSLGR--KKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1361)
Q Consensus 353 l~~~Iy~K~L~ls~~~~--~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l 429 (1361)
+...+|+|.++.+.... .++++|++++.++.|++.+.++.. .+..+...++.+++++++++. +.|- .+++++.+
T Consensus 901 lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~-~~~~--l~l~~~~~ 977 (1466)
T PTZ00265 901 MKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFY-FCPI--VAAVLTGT 977 (1466)
T ss_pred HHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHH
Confidence 77788888888775432 357899999999999999887543 233333334444444433332 2221 11111111
Q ss_pred HHHHHHHHHHHHHHH-HHHH-----------------HHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHH
Q 000671 430 CGLLNVPFAKILQKC-QSEF-----------------MIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFK 491 (1361)
Q Consensus 430 ~~~l~~~~~~~~~~~-q~~~-----------------m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~ 491 (1361)
...+...+.+..+.. .++. .+..++....++|.++|||+||.|+-|+.+.++.++.-+...+
T Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~ 1057 (1466)
T PTZ00265 978 YFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNK 1057 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 111112222222211 1111 1112344678999999999999999999988877665544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 492 WLSEAQLRKAYGTVIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRIN 570 (1361)
Q Consensus 492 ~l~~~~~~~~~~~~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~ 570 (1361)
..++.....+....+..+...+ ..++.+++..++..+.++.+.++.++..+.....++..+...+..+.+++++.+|+.
T Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~ 1137 (1466)
T PTZ00265 1058 GQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYY 1137 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222222222111111111111 222333344444457899999988887766555678888899999999999999999
Q ss_pred HHhcccC-CCCchhhhcc---ccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCC
Q 000671 571 AFLLDHE-LNNDDVRRIS---LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 571 ~fL~~~e-~~~~~~~~~~---~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~ 646 (1361)
++++.+. .+..+..... .....+.|+++|++|+|+.+++.++|+|+||+|++|+.+||||++|||||||+++|+|+
T Consensus 1138 ~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ 1217 (1466)
T PTZ00265 1138 PLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRF 1217 (1466)
T ss_pred HHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 9997542 2111111111 11234579999999999865556899999999999999999999999999999999999
Q ss_pred ccC------------------------------------------------------CCcEEEEcC-------------e
Q 000671 647 IPK------------------------------------------------------ISGTVNLYG-------------S 659 (1361)
Q Consensus 647 ~~~------------------------------------------------------~~G~v~~~g-------------~ 659 (1361)
++| ++|+|.++| .
T Consensus 1218 ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~ 1297 (1466)
T PTZ00265 1218 YDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNL 1297 (1466)
T ss_pred CCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhh
Confidence 998 699999988 4
Q ss_pred EEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 000671 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 660 iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1361)
||||+|+|.+|++||||||.+|.+ .++++++++++.+++++++..||+|.+|.||++|.+|||||||||+||||++++|
T Consensus 1298 i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p 1377 (1466)
T PTZ00265 1298 FSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREP 1377 (1466)
T ss_pred ccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999975 6788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhhcCeEEEEeC----CeEE-EecChHHHHh-cCch
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEG----GQIT-QSGNYQELLL-AGTA 811 (1361)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~----G~i~-~~g~~~~l~~-~~~~ 811 (1361)
+||||||||||||+++++.|.+.+.... .+++|+|+|||+++.++.||+|+||++ |+++ ++|+|+||++ .++.
T Consensus 1378 ~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~ 1457 (1466)
T PTZ00265 1378 KILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGV 1457 (1466)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCCh
Confidence 9999999999999999999876654433 368999999999999999999999999 9955 8999999998 4888
Q ss_pred HHHHHHH
Q 000671 812 FEQLVNA 818 (1361)
Q Consensus 812 ~~~~~~~ 818 (1361)
|.++++.
T Consensus 1458 Y~~l~~~ 1464 (1466)
T PTZ00265 1458 YKKYVKL 1464 (1466)
T ss_pred HHHHHhh
Confidence 8888753
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=622.69 Aligned_cols=471 Identities=17% Similarity=0.196 Sum_probs=357.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1361)
Q Consensus 344 ~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~ 422 (1361)
..+.+.-..+-..+|++.++.+..--++.++|+|+|.++.|++.+.+... .+..+...++.++.++++++..-.+.+++
T Consensus 1031 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~ 1110 (1522)
T TIGR00957 1031 IGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVI 1110 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666677777665555567899999999999999987543 44455556666666655544332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY 502 (1361)
Q Consensus 423 gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~ 502 (1361)
.++++++...+...+.+..+..++.....++...+..+|.++|+++||.|+||+.|.++..+..+...+...........
T Consensus 1111 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1190 (1522)
T TIGR00957 1111 IPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRW 1190 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222333334444445556667778999999999999999999999887766555543332211111111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc
Q 000671 503 -GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1361)
Q Consensus 503 -~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 581 (1361)
...+..+...++ +..+.+.+...+.++++.+..++.+...+..|+..+......+.++.+|.+|+.+|++.++.++.
T Consensus 1191 ~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~ 1268 (1522)
T TIGR00957 1191 LAVRLECVGNCIV--LFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPW 1268 (1522)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 111111111111 11122223333679999999999999999999999999999999999999999999965432211
Q ss_pred hhhh-cccc--CCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC
Q 000671 582 DVRR-ISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG 658 (1361)
Q Consensus 582 ~~~~-~~~~--~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g 658 (1361)
..+. .+++ +.++.|+++|++|+|+++. +++|+|+||+|++||.+||||++|||||||+++|+|+++|++|+|.++|
T Consensus 1269 ~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG 1347 (1522)
T TIGR00957 1269 QIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG 1347 (1522)
T ss_pred cccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECC
Confidence 1111 1111 2457899999999998653 4799999999999999999999999999999999999999999999998
Q ss_pred -------------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -------------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
+|+||||+|.+|++||||||....++++++..++++.|++++.++.+|+|.+|++||+|.+||||||
T Consensus 1348 ~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957 1348 LNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred EEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence 4999999999999999999984346888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 805 (1361)
||++||||++++|+|+|||||||+||+++.+.|.+ .++...+++|+|+|+|+++.+..+|+|+||++|+|+|.|+|+||
T Consensus 1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~-~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQS-TIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999988765 45556689999999999999999999999999999999999999
Q ss_pred HhcCchHHHHHHH
Q 000671 806 LLAGTAFEQLVNA 818 (1361)
Q Consensus 806 ~~~~~~~~~~~~~ 818 (1361)
+++++.|.++.++
T Consensus 1507 l~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1507 LQQRGIFYSMAKD 1519 (1522)
T ss_pred HhCCCHHHHHHHH
Confidence 9988889888754
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-58 Score=527.59 Aligned_cols=520 Identities=23% Similarity=0.289 Sum_probs=394.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC-cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000671 289 RTIAVVVGPLLLYAFVNYSNRGE-EN--LQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLS 365 (1361)
Q Consensus 289 ~~~~~~~~P~ll~~~i~~~~~~~-~~--~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~~~Iy~K~L~ls 365 (1361)
+-.+....|++.+..++-.++.+ .+ .......+.+.++..+..+++.-.-.+....+..++-.....-+|+..+.++
T Consensus 42 aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld 121 (591)
T KOG0057|consen 42 AKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLD 121 (591)
T ss_pred hhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35566778999998888775321 11 1111223334445555555554333344455666676677778888888887
Q ss_pred cccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 000671 366 SLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP-GLVLFLICGLLNVPFAKILQK 443 (1361)
Q Consensus 366 ~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~-gl~v~~l~~~l~~~~~~~~~~ 443 (1361)
-....+..+|++.+.|.--...|.++.. .+..+....+++.+....++...|++..+ .+..+.....+...+..+-.+
T Consensus 122 ~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~ 201 (591)
T KOG0057|consen 122 LSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNR 201 (591)
T ss_pred HHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHH
Confidence 6666667899999999877777776543 23344445577888888899999986432 222223333344445677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 000671 444 CQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIE-SRREKEFKWLSEAQLRKA---YGTVIYWMSPTIISSVIF 519 (1361)
Q Consensus 444 ~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~-~~R~~El~~l~~~~~~~~---~~~~~~~~~p~~v~~~~f 519 (1361)
++++..++.|+..+.+-+.|.|-.+||.|+-|+.-.++.. .+++.|-..++-.+.... ....++. .| .+.+.|
T Consensus 202 fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFs-v~--~~~im~ 278 (591)
T KOG0057|consen 202 FRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFS-VA--LTFIMV 278 (591)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHH-HH--HHHHHH
Confidence 9999999999999999999999999999999987665553 344445333322221111 1111111 11 122223
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCcEEEEe
Q 000671 520 LGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQE 599 (1361)
Q Consensus 520 ~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~ 599 (1361)
.+..-.....+|.+.....-+++..|+.|+..|......+.|+.+-++-....+..++... ....+....++.|+|+|
T Consensus 279 l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~--~~~~~i~~~~~~I~F~d 356 (591)
T KOG0057|consen 279 LGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQ--EAALPIELFGGSIEFDD 356 (591)
T ss_pred HHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhh--hccCCcccCCCcEEEEe
Confidence 3222222357899998889999999999999999999999998887776554433222111 00122333456799999
Q ss_pred eEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEecC
Q 000671 600 GNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQT 666 (1361)
Q Consensus 600 ~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~iayv~Q~ 666 (1361)
++|+|.++ +++|+++||+|++||.+||+|+|||||||++++|+++++ .+|+|.++| .||||||+
T Consensus 357 V~f~y~~k--~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd 433 (591)
T KOG0057|consen 357 VHFSYGPK--RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQD 433 (591)
T ss_pred eEEEeCCC--CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCc
Confidence 99999864 469999999999999999999999999999999999999 999999998 39999999
Q ss_pred CcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 667 SWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 667 ~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
..+||.||.+||.+|.+ ...++..++++..++++-+..+|+|++|.+||+|..|||||||||+||||++.||+|+++||
T Consensus 434 ~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DE 513 (591)
T KOG0057|consen 434 SVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDE 513 (591)
T ss_pred ccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecC
Confidence 99999999999999987 46778888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHHHH
Q 000671 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 817 (1361)
|||+||.++++.+++.+.. ...+||+|+|.|+++.++++|+|++++||++.+.|+++|+++..+.|.++..
T Consensus 514 aTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~ 584 (591)
T KOG0057|consen 514 ATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWT 584 (591)
T ss_pred cccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhc
Confidence 9999999999999987654 6789999999999999999999999999999999999999997777777653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-57 Score=613.57 Aligned_cols=471 Identities=19% Similarity=0.244 Sum_probs=343.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1361)
Q Consensus 344 ~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~ 422 (1361)
+.+.+.-..+...+|++.++.+..--+++.+|+|+|.++.|++.+.+... .+..+....++++.+++++.....+..++
T Consensus 979 ~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~ 1058 (1622)
T PLN03130 979 MSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWA 1058 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566677777777766555678899999999999999987543 44455555555555544433322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY 502 (1361)
Q Consensus 423 gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~ 502 (1361)
.+++++++..+...+.+..++.++..+..+....+..+|.++|+++||.|++|+.|.+...+..+...+...........
T Consensus 1059 ~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w 1138 (1622)
T PLN03130 1059 IMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRW 1138 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222233333444444455666777899999999999999999988876665555443322111110001
Q ss_pred HHHHHHHHHHHHHHHH-HHH-HHHhCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000671 503 GTVIYWMSPTIISSVI-FLG-CALTGSAPLN-----ASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1361)
Q Consensus 503 ~~~~~~~~p~~v~~~~-f~~-~~l~~~~~Lt-----~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~ 575 (1361)
.... ...+..++. +++ +.+..++..+ +..+-.+++....+..++..+......+.++.+|++|+.+|++.
T Consensus 1139 l~~~---l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~ 1215 (1622)
T PLN03130 1139 LAIR---LETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDL 1215 (1622)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0000 011111111 111 1222222111 23333344445556667777777778888999999999999976
Q ss_pred cCCCCchhh-hcccc--CCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCc
Q 000671 576 HELNNDDVR-RISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652 (1361)
Q Consensus 576 ~e~~~~~~~-~~~~~--~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G 652 (1361)
++..+...+ ..+++ +.++.|+++|++|+|+++ .+++|+|+||+|++||.+||||++|||||||+++|+|+++|++|
T Consensus 1216 ~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G 1294 (1622)
T PLN03130 1216 PSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1294 (1622)
T ss_pred CCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCc
Confidence 543221111 11111 234689999999999754 24799999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCC
Q 000671 653 TVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1361)
Q Consensus 653 ~v~~~g-------------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1361)
+|.++| +|+||||+|.+|++||||||.++.+.++++..++++.|++.+.++.+|+|.+|.|||+|.+
T Consensus 1295 ~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~n 1374 (1622)
T PLN03130 1295 RILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGEN 1374 (1622)
T ss_pred eEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCC
Confidence 999998 4999999999999999999999888899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEe
Q 000671 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1361)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1361)
||||||||++||||++++|+|+|||||||+||+++.+.|.+. ++...+++|+|+|+|+++.+.+||+|+||++|+|+|.
T Consensus 1375 LSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~-I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~ 1453 (1622)
T PLN03130 1375 FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEF 1453 (1622)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999987654 5555679999999999999999999999999999999
Q ss_pred cChHHHHhc-CchHHHHHHHh
Q 000671 800 GNYQELLLA-GTAFEQLVNAH 819 (1361)
Q Consensus 800 g~~~~l~~~-~~~~~~~~~~~ 819 (1361)
|+|+||+++ ++.|.++.+..
T Consensus 1454 Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1454 DTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred CCHHHHHhCCCCHHHHHHHHc
Confidence 999999987 57888887654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-56 Score=608.46 Aligned_cols=471 Identities=19% Similarity=0.239 Sum_probs=342.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1361)
Q Consensus 344 ~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~ 422 (1361)
+.+.+.-..+...+|++.++.+..--+++++|+++|.++.|++.+.+... .+..+....++++.+++++.....+..++
T Consensus 976 ~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~ 1055 (1495)
T PLN03232 976 SSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWA 1055 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445566667777665555677899999999999999987543 33344444455555544443332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY 502 (1361)
Q Consensus 423 gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~ 502 (1361)
.++++++...+.....+..+..++..+..+..-.+..+|.++|+++||.|++|+.|.++.++..+...+...........
T Consensus 1056 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 1135 (1495)
T PLN03232 1056 IMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRW 1135 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111111222222233344445556667778899999999999999999998877666555444322111111110
Q ss_pred HHHHHHHHHHHHHHH-HHHH-HHHhCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000671 503 GTVIYWMSPTIISSV-IFLG-CALTGSAPLN-----ASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1361)
Q Consensus 503 ~~~~~~~~p~~v~~~-~f~~-~~l~~~~~Lt-----~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~ 575 (1361)
.... ...+..++ .+++ +.+...+.+. ++.+-.+++....+..|+..+...+..+..+.+|.+||.++++.
T Consensus 1136 l~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~ 1212 (1495)
T PLN03232 1136 LTIR---LETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDL 1212 (1495)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0000 00111111 1111 1222212221 22222345555667788999999999999999999999999975
Q ss_pred cCCCCchhhh-cccc--CCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCc
Q 000671 576 HELNNDDVRR-ISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652 (1361)
Q Consensus 576 ~e~~~~~~~~-~~~~--~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G 652 (1361)
++..+...+. .+++ +..+.|+++|++|+|+++ .+++|+|+||+|++||.+||||++|||||||+++|+|+++|++|
T Consensus 1213 ~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G 1291 (1495)
T PLN03232 1213 PSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKG 1291 (1495)
T ss_pred CccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 4322211111 1111 234679999999999754 35799999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCC
Q 000671 653 TVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1361)
Q Consensus 653 ~v~~~g-------------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1361)
+|.++| +|+||||+|.+|++||||||.++.++++++..++++.+++.+.++.+|+|.+|++|++|.+
T Consensus 1292 ~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1371 (1495)
T PLN03232 1292 RIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGEN 1371 (1495)
T ss_pred eEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCC
Confidence 999998 4999999999999999999999888899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEe
Q 000671 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1361)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1361)
||||||||++||||++++|+|+|||||||+||+++.+.|.+ .++...+++|+|+|||+++.+.+||+|+||++|+|+|.
T Consensus 1372 LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~-~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~ 1450 (1495)
T PLN03232 1372 FSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQR-TIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEY 1450 (1495)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH-HHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999998765 45555689999999999999999999999999999999
Q ss_pred cChHHHHhcCc-hHHHHHHHh
Q 000671 800 GNYQELLLAGT-AFEQLVNAH 819 (1361)
Q Consensus 800 g~~~~l~~~~~-~~~~~~~~~ 819 (1361)
|+|+||+++++ .|.++.++.
T Consensus 1451 Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232 1451 DSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred CCHHHHHhCCCCHHHHHHHHh
Confidence 99999998764 788887653
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-56 Score=511.68 Aligned_cols=473 Identities=23% Similarity=0.349 Sum_probs=354.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 000671 340 FGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVL--FGVVG 417 (1361)
Q Consensus 340 ~~~~~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~~~L--~~~lG 417 (1361)
..+.....|+-+.+.-.+|+|....+.........|++.|.+..|++.++++.......|...+-++.+..+. |.-++
T Consensus 80 lvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~ 159 (573)
T COG4987 80 LVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIP 159 (573)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3455667788889999999999999988777888999999999999999998776666665544443333332 33444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 418 LGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ 497 (1361)
Q Consensus 418 ~~~l~gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~ 497 (1361)
.+.+.|+...++.+.+...+.+..++..++..+.+..=-+-..+.+.|....+++|-++.+.+.+++.-+.=.+.-+|.+
T Consensus 160 ~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~ 239 (573)
T COG4987 160 LALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQA 239 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444444444555666666666666666666667889999999999999999887766543222111111211
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000671 498 LRKAYGTVI-YWMSPTIISSVIFLGCALTGSAPLNA-STIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1361)
Q Consensus 498 ~~~~~~~~~-~~~~p~~v~~~~f~~~~l~~~~~Lt~-~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~ 575 (1361)
.......++ ....-.+++...+......+.+..+. ..+...+..|-.+..-...-|.++....|+..|.+|+.+.+.+
T Consensus 240 ~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q 319 (573)
T COG4987 240 RFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQ 319 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccC
Confidence 111111111 11122222212222222222233432 2222222223222211122336778888999999999998876
Q ss_pred cCCCCchhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEE
Q 000671 576 HELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1361)
Q Consensus 576 ~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~ 655 (1361)
++....+ +...+ ..+..++++|++|+|+++ +.++|+|+||++++||.+||+|++|||||||++.|.|-++|++|+|.
T Consensus 320 ~~e~~~~-~~~~~-~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~ 396 (573)
T COG4987 320 KPEVTFP-DEQTA-TTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396 (573)
T ss_pred CcccCCC-ccccC-CccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeee
Confidence 5433222 11111 122279999999999976 45799999999999999999999999999999999999999999999
Q ss_pred EcC-------------eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 656 LYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 656 ~~g-------------~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
.+| .+++++|.+.+|++|+|||+..++| .++|...+++++.+|++-++..|+|.+|.+||.|..||
T Consensus 397 ~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LS 476 (573)
T COG4987 397 LNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLS 476 (573)
T ss_pred ECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCC
Confidence 988 4899999999999999999999987 46788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecC
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1361)
||||||++|||++.+|+++++|||||.|||+.|++++.+.+. ...+|||+|+|||++..++.+|+|++|++|+++++|+
T Consensus 477 GGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~-~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~ 555 (573)
T COG4987 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF-EHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGT 555 (573)
T ss_pred chHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHH-HHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCC
Confidence 999999999999999999999999999999999999987654 4567999999999999999999999999999999999
Q ss_pred hHHHHhcCchHHHHH
Q 000671 802 YQELLLAGTAFEQLV 816 (1361)
Q Consensus 802 ~~~l~~~~~~~~~~~ 816 (1361)
|++++.+++.|.++.
T Consensus 556 ~~~Ll~~~g~~~~l~ 570 (573)
T COG4987 556 HAELLANNGRYKRLY 570 (573)
T ss_pred HHhhhccccHHHHHh
Confidence 999999888888765
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-55 Score=598.94 Aligned_cols=466 Identities=15% Similarity=0.180 Sum_probs=348.8
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLIC 430 (1361)
Q Consensus 352 ~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l~ 430 (1361)
.+-..+|++.++.+..-.+++++|+|+|.++.|++.+.+.+. .+..+....+.++.++++++....+..++.++++++.
T Consensus 1032 ~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~ 1111 (1560)
T PTZ00243 1032 NMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLY 1111 (1560)
T ss_pred HHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777666555677899999999999999988543 3445555555555555554433322222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000671 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVIYWM 509 (1361)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~-~~~~~~~ 509 (1361)
..+...+.+..+..++.....++.-.+..+|.++|+++||.|++|+.|.++..+.-+...+...+....... ....-..
T Consensus 1112 ~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l 1191 (1560)
T PTZ00243 1112 YRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFL 1191 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333444445555555666777789999999999999999999988777654433332211111111111 1111111
Q ss_pred HHHHHHHH-HHHHH-HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-ch----
Q 000671 510 SPTIISSV-IFLGC-ALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN-DD---- 582 (1361)
Q Consensus 510 ~p~~v~~~-~f~~~-~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~-~~---- 582 (1361)
...++.++ .++.+ ++.+...++++.+..++.+...+..|+..+...+..+.++.+|++||.+|++..+.++ ..
T Consensus 1192 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~ 1271 (1560)
T PTZ00243 1192 SNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEE 1271 (1560)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccc
Confidence 11111111 11221 1223345788887777777788889999999999999999999999999995321110 00
Q ss_pred -------------------hhhc------cccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHH
Q 000671 583 -------------------VRRI------SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637 (1361)
Q Consensus 583 -------------------~~~~------~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKS 637 (1361)
.+.. +.....+.|+|+|++|+|+++ .+++|+|+||+|++||.++|||++|||||
T Consensus 1272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKS 1350 (1560)
T PTZ00243 1272 VDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKS 1350 (1560)
T ss_pred ccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHH
Confidence 0000 001124579999999999764 34699999999999999999999999999
Q ss_pred HHHHHHhCCccCCCcEEEEcC-------------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhc
Q 000671 638 SLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINN 704 (1361)
Q Consensus 638 TLl~~llg~~~~~~G~v~~~g-------------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~ 704 (1361)
||+++|+|+++|++|+|.++| .|+||||+|.+|++||||||..+.++++++..++++.|++.+.++.
T Consensus 1351 TLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~ 1430 (1560)
T PTZ00243 1351 TLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVAS 1430 (1560)
T ss_pred HHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhh
Confidence 999999999999999999998 4999999999999999999998777889999999999999999999
Q ss_pred CCCCCCccccCCCCCCChHHHHHHHHHHHHccC-CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHh
Q 000671 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND-ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783 (1361)
Q Consensus 705 l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~-~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 783 (1361)
+|+|.+|.+|++|.+||||||||++||||++++ |+|+|||||||+||+++.+.|.+ .+....+++|+|+|+|+++.+.
T Consensus 1431 lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~-~L~~~~~~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243 1431 ESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQA-TVMSAFSAYTVITIAHRLHTVA 1509 (1560)
T ss_pred CcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHH-HHHHHCCCCEEEEEeccHHHHH
Confidence 999999999999999999999999999999996 89999999999999999999865 4455667899999999999999
Q ss_pred hcCeEEEEeCCeEEEecChHHHHhc-CchHHHHHHHh
Q 000671 784 EVDRILVLEGGQITQSGNYQELLLA-GTAFEQLVNAH 819 (1361)
Q Consensus 784 ~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 819 (1361)
+||+|+||++|+|++.|+|+||+++ ++.|.++++..
T Consensus 1510 ~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1510 QYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred hCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 9999999999999999999999974 77898887653
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-54 Score=540.16 Aligned_cols=510 Identities=17% Similarity=0.145 Sum_probs=363.2
Q ss_pred HHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 271 ITN-VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1361)
Q Consensus 271 l~~-~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1361)
+++ .+++.++...++.++..++..+.|.++..+++...... . ....+.+++++. ..++.....+...+.+.++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 84 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG-Q--GSLFSFGGLCLL---ALLFRIGADIFPAYAGMHI 84 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-c--hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 455 67778888888888888999999998887765311010 0 111111122222 1222222233456678888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1361)
Q Consensus 350 R~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l 429 (1361)
...+...+|+|.++++.....++++|+++|.++.|++.+.++...+..+....+.++++++++++.-...+++.++++.+
T Consensus 85 ~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~ 164 (555)
T TIGR01194 85 IANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIII 164 (555)
T ss_pred HHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88888999999999887655667899999999999999988665444444444444444444433221112222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 000671 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE--KFKSLI----ESRREKEFKWLSEAQLRKAYG 503 (1361)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~--~f~~~i----~~~R~~El~~l~~~~~~~~~~ 503 (1361)
.+.+..+..++.++...+..+..++..+.+.|.++|++++|.|+.|+ ...++. ++.|+...+..+.. ....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 241 (555)
T TIGR01194 165 GTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIF---IAAE 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHH
Confidence 22223334455666667777788888999999999999999999854 223333 33333222211111 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCch-
Q 000671 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD- 582 (1361)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~- 582 (1361)
.+........+.++.+.+. .. +.++.+.+++.+.+...+..|+..+...+..+.++++|.+||.++++.++.++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~--~~-~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~ 318 (555)
T TIGR01194 242 NFGQLLFFLLIGCALFAAA--MF-ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPEL 318 (555)
T ss_pred HHHHHHHHHHHHHHHHHHH--Hh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 1111111111111111111 11 4789999888888899999999999999999999999999999998532111000
Q ss_pred --hhhc-----cccCCCCcEEEEeeEEEeCCCC--CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcE
Q 000671 583 --VRRI-----SLQKSDRSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1361)
Q Consensus 583 --~~~~-----~~~~~~~~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~ 653 (1361)
.+.. +.....+.|+++|++|+|++++ ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~ 398 (555)
T TIGR01194 319 ELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGE 398 (555)
T ss_pred cccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 0000 1112235799999999997532 236999999999999999999999999999999999999999999
Q ss_pred EEEcC-------------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 654 v~~~g-------------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
|.++| .++|++|+|+++++|+++|+ ..+.++++..++++.+++.++++.+|+|++|. .+|
T Consensus 399 i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~L 471 (555)
T TIGR01194 399 ILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TAL 471 (555)
T ss_pred EEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccC
Confidence 99987 38999999999999999995 23456778889999999999999999999884 789
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhhcCeEEEEeCCeEEEe
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1361)
|||||||++||||++++|+++|||||||+||+++++.+.+.+.+.. .+++|+|++||+++.+..||+|++|++|++++.
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999987766433 468999999999999999999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-55 Score=548.77 Aligned_cols=468 Identities=24% Similarity=0.325 Sum_probs=396.9
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC--CchhHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000671 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PK--ITSGILI-GVYAGVSTASAVFVYFRSFFAA 960 (1361)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~--~~--~~~~~~l-~iy~~l~~~~~i~~~~~~~~~~ 960 (1361)
+..++.++...+. .+.-++++.+..+.+.++.++.....+|. +. .....++ ..+++.++...++.++|.+...
T Consensus 142 ~~~f~~~~~~~~~--~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 142 LSWFIPLLFKYRR--LLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred hHhHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555543322 22223334444556666777777666553 11 1222223 3455566778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000671 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1361)
Q Consensus 961 ~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv 1040 (1361)
+.+.+....+-.++++|+++.|++||+++++|++++|+. |++.|.+.+.......+..++..++.+++|++.+|+++++
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li 298 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLI 298 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999996 7899999998888888888888888899999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000671 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1361)
Q Consensus 1041 ~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1361)
++..++++..+.....+..|+..+..-+..+...++..|++.|+.|||+.+.|+++..+.++..+++.+..+.......|
T Consensus 299 ~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~ 378 (709)
T COG2274 299 VLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALI 378 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 88777777776666666666666666667777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000671 1121 LILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1361)
Q Consensus 1121 l~~rl~~l~~l~~~~~~~~-~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~ 1199 (1361)
......++..+..+.+.++ +.++..|.+|.|.+..+.+.+..+++|+..+++.+.+++....+.||+.+.++.|+|.+.
T Consensus 379 ~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~ 458 (709)
T COG2274 379 LNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG 458 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 9988888888877666665 456788999999999999999999999999999999999999999999999999998642
Q ss_pred CCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCe
Q 000671 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1361)
Q Consensus 1200 ~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGv 1279 (1361)
++.+...|+.+|+|+|+||+|+|+++.|+||+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|++||+
T Consensus 459 ---~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~ 535 (709)
T COG2274 459 ---DKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV 535 (709)
T ss_pred ---ccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 22244556789999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCc---CCCCCCcccccCCchhhhhhccccc
Q 000671 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTP---NSRNSRIDIDFPTFNKFCCRIIKTK 1355 (1361)
Q Consensus 1280 DI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 1355 (1361)
|++++++++||++|++||||++||+|||||||.-.+ +.+||||++|++.|+ .-.+--.|.|++=+|+|.|+|.|||
T Consensus 536 dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 536 DLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred eHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 999999999999999999999999999999996333 478999999999985 3446667888888999999999999
Q ss_pred ccee
Q 000671 1356 QLVT 1359 (1361)
Q Consensus 1356 ~~~~ 1359 (1361)
|++.
T Consensus 616 Qrla 619 (709)
T COG2274 616 QRLA 619 (709)
T ss_pred HHHH
Confidence 9864
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-56 Score=499.53 Aligned_cols=456 Identities=22% Similarity=0.346 Sum_probs=338.8
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 000671 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWF-HLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICG-- 431 (1361)
Q Consensus 355 ~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~-~~~w~~plqi~va~~~L~~~lG~~~l~gl~v~~l~~-- 431 (1361)
..+|++...+|-.-.-...+||+...|..-...+. +..++ ..+--..+.+++++ .|..+-.-...|++|++.+.
T Consensus 296 ~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~--vYF~~~Fn~wFgLIVfl~m~lY 372 (790)
T KOG0056|consen 296 TELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM--VYFFIKFNIWFGLIVFLMMLLY 372 (790)
T ss_pred HHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh--hhhhhhHhHHHHHHHHHHHHHH
Confidence 34555555554332223457888877765444433 22221 22222234445554 33333333445555443322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 432 -LLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK----FKSLIESRREKEFKWLSEAQLRKAYGTVI 506 (1361)
Q Consensus 432 -~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~----f~~~i~~~R~~El~~l~~~~~~~~~~~~~ 506 (1361)
.+...+...-.++|++....-.+--....+.|-|..+||.|+-|+. +.+.|.+..+.|-|.+....+++.....+
T Consensus 373 ~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~I 452 (790)
T KOG0056|consen 373 CYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGI 452 (790)
T ss_pred hheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2222234444566666554444444456677888999999998864 45556666666655444333333322222
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhc
Q 000671 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1361)
Q Consensus 507 ~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~ 586 (1361)
.... +.....+.+|... .+.+|.+...-.....-.|..||+.+......+....+-++|+.+.|++++.-.+...-.
T Consensus 453 i~lg--ll~gsll~aY~Vt-~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~ 529 (790)
T KOG0056|consen 453 IGLG--LLAGSLLCAYRVT-EQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAP 529 (790)
T ss_pred hhhH--Hhhhhheeeeeee-eccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCC
Confidence 2111 1122223334333 478888886666777888999999999999999999999999999987654221111112
Q ss_pred cccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------
Q 000671 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1361)
Q Consensus 587 ~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------- 658 (1361)
+.....+.|+++|++|+|+++ +|+|+||||++++|+.+|+|||+|+||||+++.+.++++..+|.|.++|
T Consensus 530 pl~~~~G~i~fsnvtF~Y~p~--k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~ 607 (790)
T KOG0056|consen 530 PLKVTQGKIEFSNVTFAYDPG--KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ 607 (790)
T ss_pred CccccCCeEEEEEeEEecCCC--CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHH
Confidence 223356889999999999875 6899999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
+||.||||..+||.||..||.|+++ ...|+..++.++.++++.+-.+|+|+.|.+||+|..||||+||||++||
T Consensus 608 ~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiAR 687 (790)
T KOG0056|consen 608 SSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIAR 687 (790)
T ss_pred HHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHH
Confidence 4999999999999999999999998 4567778889999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhc-Cch
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA-GTA 811 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~ 811 (1361)
+++++|.|++|||.|||||.++++.| +.++.....++|.|+|.|+++.+-+||.|++++||+|+|.|+|+|+..+ ++.
T Consensus 688 tiLK~P~iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~ 766 (790)
T KOG0056|consen 688 TILKAPSIILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGA 766 (790)
T ss_pred HHhcCCcEEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCc
Confidence 99999999999999999999999997 5667777789999999999999999999999999999999999999987 788
Q ss_pred HHHHHHHh
Q 000671 812 FEQLVNAH 819 (1361)
Q Consensus 812 ~~~~~~~~ 819 (1361)
|+++.+.+
T Consensus 767 Ya~MWq~q 774 (790)
T KOG0056|consen 767 YADMWQAQ 774 (790)
T ss_pred HHHHHHHH
Confidence 99988654
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=578.66 Aligned_cols=471 Identities=19% Similarity=0.192 Sum_probs=348.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1361)
Q Consensus 344 ~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~ 422 (1361)
+.+.+.-..+...+|++.++.+..-.++..+|+|+|.++.|++.+.+... .+..+....+.+++++++++...++.+++
T Consensus 951 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~ 1030 (1490)
T TIGR01271 951 HTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIA 1030 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666655444567899999999999999987543 34455555555665555555444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000671 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQL-RKA 501 (1361)
Q Consensus 423 gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~-~~~ 501 (1361)
.++++++...+...+.+..+..++.....+....+...|.++|+.+||.|+||+.|.++..+.-+...+....... ...
T Consensus 1031 ~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 1110 (1490)
T TIGR01271 1031 AIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRW 1110 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233333333344444555555667777888999999999999999999999887776654432211111000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc
Q 000671 502 YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1361)
Q Consensus 502 ~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~ 581 (1361)
+...+....-.++..+.+.. ++....+++.+-.++++...+..++..+......+..+.+|.+||.+|++.++..+.
T Consensus 1111 l~~~~~~i~~~~~~~~~~l~---~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~ 1187 (1490)
T TIGR01271 1111 FQMRIDIIFVFFFIAVTFIA---IGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPR 1187 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 11000000101111111111 111224455555566666667788888888888999999999999999965432211
Q ss_pred hhh--------------h-ccc--cCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHh
Q 000671 582 DVR--------------R-ISL--QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL 644 (1361)
Q Consensus 582 ~~~--------------~-~~~--~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ll 644 (1361)
..+ . .++ .+..+.|+++|++|+|+++ .+++|+|+||+|++||.++|||++|||||||+++|+
T Consensus 1188 ~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~ 1266 (1490)
T TIGR01271 1188 PSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL 1266 (1490)
T ss_pred ccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 000 0 000 1234689999999999864 357999999999999999999999999999999999
Q ss_pred CCccCCCcEEEEcC-------------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCc
Q 000671 645 GEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711 (1361)
Q Consensus 645 g~~~~~~G~v~~~g-------------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t 711 (1361)
|+++ .+|+|.++| +++|+||+|.+|++||||||....++++++..++++.|+|.+.+..+|+|.+|
T Consensus 1267 rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt 1345 (1490)
T TIGR01271 1267 RLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDF 1345 (1490)
T ss_pred hhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccccc
Confidence 9997 799999988 49999999999999999999877778899999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEE
Q 000671 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1361)
Q Consensus 712 ~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1361)
.||++|.+||||||||++||||++++|+|+|||||||+||+++.+.|.+. ++...+++|+|+|||+++.+..+|+|++|
T Consensus 1346 ~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~-L~~~~~~~TvI~IaHRl~ti~~~DrIlvL 1424 (1490)
T TIGR01271 1346 VLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKT-LKQSFSNCTVILSEHRVEALLECQQFLVI 1424 (1490)
T ss_pred ccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecCHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999988655 45556789999999999999999999999
Q ss_pred eCCeEEEecChHHHHhcCchHHHHHHHhh
Q 000671 792 EGGQITQSGNYQELLLAGTAFEQLVNAHR 820 (1361)
Q Consensus 792 ~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 820 (1361)
++|+|++.|+|++|+++++.|.++.++..
T Consensus 1425 ~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1425 EGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred ECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 99999999999999988888998886543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=487.23 Aligned_cols=527 Identities=22% Similarity=0.297 Sum_probs=409.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1361)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1361)
...+....++..++..+++..+-.++....|+.+-..-+-+=. ..+...-..+.+.....++++.++..--.+...|+|
T Consensus 13 ~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~-S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig 91 (580)
T COG4618 13 LLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLP-SRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIG 91 (580)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556667778888888888888888999877655443211 122222333444444445556666544456678999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF------WFHLTWSLALQLFLAIGVLFGVVGLGA 420 (1361)
Q Consensus 347 ~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~------~~~~~w~~plqi~va~~~L~~~lG~~~ 420 (1361)
.++-..|..-||.-+++.....+......+.. .|.+.+..|.. +|...| .|+=++++ +++.-++|+-+
T Consensus 92 ~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW-~P~yl~v~-fl~Hp~lG~~a 165 (580)
T COG4618 92 ERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPW-MPLYLAVI-FLFHPWLGLIA 165 (580)
T ss_pred HHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCch-HHHHHHHH-HHHHHHHHHHH
Confidence 99999999999998864433222222223333 36666655433 233344 56644443 45667899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 421 LPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK 500 (1361)
Q Consensus 421 l~gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~ 500 (1361)
++|.++++.+..+|- +..++--++..+..-+|...++-.+.|..+|+.+|..+...++-.+...+-+++..+..-..
T Consensus 166 ~~ga~iLv~la~ln~---~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~ 242 (580)
T COG4618 166 LAGAIILVVLALLNE---RATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRN 242 (580)
T ss_pred HHHHHHHHHHHHHHH---HHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999888887777763 44455566777788899999999999999999999999999998888887777666554433
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000671 501 AY-GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN 579 (1361)
Q Consensus 501 ~~-~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~ 579 (1361)
.. +...-..--.+-+.+.=.+.+++-++.+|++.++.+--+..-.-.|+...-....++..|+.|.+|++++|......
T Consensus 243 ~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~ 322 (580)
T COG4618 243 GAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAA 322 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 22 21111111111222222233344457899999998877777777899999999999999999999999999754322
Q ss_pred CchhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-
Q 000671 580 NDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658 (1361)
Q Consensus 580 ~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g- 658 (1361)
.++.+.+.+++.+.++++++.=+ +..+|+++|+||++++||-++|+||+|||||||.++|.|..+|.+|.|.++|
T Consensus 323 ---~~~m~LP~P~g~L~Ve~l~~~PP-g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga 398 (580)
T COG4618 323 ---AERMPLPAPQGALSVERLTAAPP-GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGA 398 (580)
T ss_pred ---cCCCCCCCCCceeeEeeeeecCC-CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecch
Confidence 23345566788999999999654 4467999999999999999999999999999999999999999999999998
Q ss_pred ------------eEEEEecCCcCCCCCHHHHhh-cCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ------------SIAYVSQTSWIQSGSIRDNIL-YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ------------~iayv~Q~~~i~~~ti~eni~-~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.|||.||+-.+|.+||.|||. |+.+.|++++-++.+..+.++-+-.+|+|++|.||+.|..||||||
T Consensus 399 ~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQR 478 (580)
T COG4618 399 DLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQR 478 (580)
T ss_pred hhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHH
Confidence 599999999999999999997 6667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 805 (1361)
|||+||||+|.||.+++||||-|+||..-++.+.+.+.....+|.|+|+|||+++.+..+|+|.+|+||++...|+.+|+
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eV 558 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEV 558 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHH
Confidence 99999999999999999999999999999999988777667789999999999999999999999999999999999998
Q ss_pred Hh
Q 000671 806 LL 807 (1361)
Q Consensus 806 ~~ 807 (1361)
++
T Consensus 559 La 560 (580)
T COG4618 559 LA 560 (580)
T ss_pred HH
Confidence 74
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-54 Score=539.84 Aligned_cols=413 Identities=18% Similarity=0.185 Sum_probs=344.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHH
Q 000671 944 VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023 (1361)
Q Consensus 944 l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~ 1023 (1361)
+.++..++.++..++....+.+...+++.++++++++.|.+||++.++|++++|+++|++.++..+...+..++..++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677788888888899999999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHH
Q 000671 1024 LAIIGIMTFVTWQVLVVAIFAMVAVRFV-QRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLK 1102 (1361)
Q Consensus 1024 i~~i~v~~~~~~~l~lv~ip~~~~~~~~-~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~ 1102 (1361)
++.++++++.+|.+.++++..++++.++ ..++.+..++..+...+..+.+.+++.|+++|+++||+|+.|+++.+++.+
T Consensus 142 ~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 221 (529)
T TIGR02868 142 SAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEA 221 (529)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHH
Confidence 8888999999999988776655554443 344445556666666677788999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000671 1103 LVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYI 1181 (1361)
Q Consensus 1103 ~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~-~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~ 1181 (1361)
..++..+..........+......++..+..+.+.++ +..+..|.+++|.+..++.|+..+..++..+.+.+.++++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (529)
T TIGR02868 222 ADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVR 301 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888877776666655555554454444433333222 344567899999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHH
Q 000671 1182 ISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLIS 1261 (1361)
Q Consensus 1182 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~ 1261 (1361)
.|.+|+.++++.++|.+... ...+...+|..|+|+|+||+|+|+++. ++|+|+||+|+|||+|||||+||||||||++
T Consensus 302 ~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~ 379 (529)
T TIGR02868 302 AAAERIEEVTGAKGPRPEGV-VPAAGALGLGKPTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLM 379 (529)
T ss_pred HHHHHHHHHhcCCCCcCCCC-CCCCcccCCCCceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999998776543211 111112344567899999999997544 5999999999999999999999999999999
Q ss_pred HHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCc
Q 000671 1262 ALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRI 1337 (1361)
Q Consensus 1262 ~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~ 1337 (1361)
+|.|+|+|++|+|+|||+||+++ .+++|++|++|||||+||+|||||||...+ +++|||+++|++.|+-.. +--=
T Consensus 380 lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~ 458 (529)
T TIGR02868 380 LLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPD 458 (529)
T ss_pred HHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcc
Confidence 99999999999999999999999 999999999999999999999999998643 589999999999986321 1223
Q ss_pred ccccCCchhhhhhcccccccee
Q 000671 1338 DIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1338 ~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
|+|+.-++.|.|+|.||||++.
T Consensus 459 GldT~ige~G~~LSGGQrQRia 480 (529)
T TIGR02868 459 GLDTVLGEGGARLSGGERQRLA 480 (529)
T ss_pred cccchhccccCcCCHHHHHHHH
Confidence 6788889999999999999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-52 Score=524.41 Aligned_cols=506 Identities=16% Similarity=0.166 Sum_probs=348.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 267 VRKVITNVYLKENIFIAICALLRTIAVVVG-PLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRS 345 (1361)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-P~ll~~~i~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (1361)
+++.+++.+++.++...++.++..++..+. |++.+.+++..... ...-+.+++.+++..++..+ ..+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS---LLVLPEFLGLLLLLMAVTLG----SQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 455667777888888888888888887764 67777777644221 11111111111122111111 22233445
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 346 GMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1361)
Q Consensus 346 ~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~~~L~~~lG~~~l~gl~ 425 (1361)
+.++...+...+|+|.++++.....++++|+++|.++.|++.+..+...+..++...+.++++++++++.-+..+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 56666666777888888877655567789999999999999998765556667777777777776666543333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc--h----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQS--W----EEKFKSLIESRREKEFKWLSEAQLR 499 (1361)
Q Consensus 426 v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~--w----E~~f~~~i~~~R~~El~~l~~~~~~ 499 (1361)
++.+...+...+.++.++..++.++..+++.+.++|.++|++++++.. . ++.|.+..++.++...+..+ .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 231 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADT----F 231 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHH----H
Confidence 333333445556777788888889999999999999999999997433 2 23334434444433332111 1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000671 500 KAYGTVIYWMSPTIISS-VIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHEL 578 (1361)
Q Consensus 500 ~~~~~~~~~~~p~~v~~-~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~ 578 (1361)
.............++.. ..+.... .+...++...++. .....+..|+..+...+..+.+++++.+|+.+++..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~ 308 (547)
T PRK10522 232 HLSAVNWSNIMMLGAIGLVFYMANS-LGWADTNVAATYS--LTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYK 308 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhcCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 11111110011111111 1111111 1112222222222 222335689999999999999999999999999765432
Q ss_pred CCchhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC
Q 000671 579 NNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG 658 (1361)
Q Consensus 579 ~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g 658 (1361)
++.. +. ...+..+.++++|++|+|+.+ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 309 ~~~~-~~-~~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 384 (547)
T PRK10522 309 AEFP-RP-QAFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384 (547)
T ss_pred cccc-cc-cccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 2101 11 111112479999999999743 4699999999999999999999999999999999999999999999987
Q ss_pred -------------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -------------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
+++|++|+|.++++|++|| +...++++.+++++.+++..+++. ++|. .+|.+||||||
T Consensus 385 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~ 455 (547)
T PRK10522 385 KPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQK 455 (547)
T ss_pred EECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHH
Confidence 4999999999999999999 445667778888888877766542 2221 24789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeEEEe
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1361)
||++||||++++|++++||||||+||+++++.+.+.+..... +++|+|+|||+++.+..||+|++|++|++++.
T Consensus 456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999998877654432 58999999999999999999999999999876
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=548.14 Aligned_cols=468 Identities=20% Similarity=0.207 Sum_probs=373.8
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCch---hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP--KITS---GILIGVYAGVSTASAVFVYFRSFFAA 960 (1361)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~---~~~l~iy~~l~~~~~i~~~~~~~~~~ 960 (1361)
++.+++|++..+. .+...+++.++...+.+..+++.+..++.- .... ...+.+++++.++..++.+++.+...
T Consensus 149 ~~~l~~~~~~~~~--~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (711)
T TIGR00958 149 LFRLLGLSGRDWP--WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFN 226 (711)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556554332 233344444555566667777776655421 1111 12234455556667778888888899
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000671 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1361)
Q Consensus 961 ~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv 1040 (1361)
..+.+...++|.++++++++.|++||+++++|+++||+++|++.++..+...+..++..++.+++.+++++..+|.+.++
T Consensus 227 ~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~ 306 (711)
T TIGR00958 227 YTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMV 306 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000671 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1361)
Q Consensus 1041 ~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1361)
.+..+++..++.+++.+..++..+...+..+...+++.|+++|+++||+|+.|+++.+++.+..++..+...........
T Consensus 307 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (711)
T TIGR00958 307 TLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAG 386 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777778888899999999999999999999999999999998877665544333332
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000671 1121 LILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1361)
Q Consensus 1121 l~~rl~~l~~l~~~~~-~~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~ 1199 (1361)
......++..+..+++ .+.+.++..|.+++|.+..++.|...+..++..+...+.++++...+.+|+.++++.+++.+.
T Consensus 387 ~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 466 (711)
T TIGR00958 387 YLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPL 466 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 2222222222222222 222344568999999999999999999999999999999999999999999999987766432
Q ss_pred CCCCCCCCCCCCCcceEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcC
Q 000671 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1361)
Q Consensus 1200 ~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDG 1278 (1361)
. . ....++.+|.|+|+||+|+|+.+ .++||+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++||
T Consensus 467 ~--~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 542 (711)
T TIGR00958 467 T--G--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG 542 (711)
T ss_pred C--C--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 1 1 11224567899999999999642 24699999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHHhhcCceecCcccccccchhhhcCCC-CCCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccc
Q 000671 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKT 1354 (1361)
Q Consensus 1279 vDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~-~~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 1354 (1361)
+|+++++.+++|++|++|||||++|+|||||||... .+.+|||+++|++.++-.. +---|+|+..+++|.++|.||
T Consensus 543 ~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 622 (711)
T TIGR00958 543 VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQ 622 (711)
T ss_pred EEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHH
Confidence 999999999999999999999999999999999743 3578999999999986321 122267888899999999999
Q ss_pred cccee
Q 000671 1355 KQLVT 1359 (1361)
Q Consensus 1355 ~~~~~ 1359 (1361)
||++.
T Consensus 623 kQRla 627 (711)
T TIGR00958 623 KQRIA 627 (711)
T ss_pred HHHHH
Confidence 99974
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=536.66 Aligned_cols=448 Identities=21% Similarity=0.299 Sum_probs=364.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC--C-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000671 906 VLAQSGFVGLQAAATYWLAYAIQIPK--I-TSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAP 982 (1361)
Q Consensus 906 ~~~~~~~~~~~~~~~~wl~~~~~~~~--~-~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap 982 (1361)
+++.++...+....+++++..++... . ....+...++++.++..++.++..+...+.+.+...++|.++++++++.|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~ 99 (567)
T COG1132 20 ILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLP 99 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33334445556666666665443321 1 11123334445555667777777788888889999999999999999999
Q ss_pred CccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 983 MLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAREL 1062 (1361)
Q Consensus 983 ~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l 1062 (1361)
++||+++++|++++|+++|++.++..+......+...++.+++.+++++..+|.+.++.+...+++.+...++.+..++.
T Consensus 100 ~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (567)
T COG1132 100 LSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKL 179 (567)
T ss_pred HHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988866666677888888899999999998888777777777777777777888
Q ss_pred HHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh
Q 000671 1063 IRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LV 1141 (1361)
Q Consensus 1063 ~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~-~v 1141 (1361)
.+......+.+.+.+.|+++|+++||+|+.++...+++.+..+...+...........+.....++..+....+... ..
T Consensus 180 ~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (567)
T COG1132 180 SRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGF 259 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999988888888877766655545555555444444444443333332 33
Q ss_pred hhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEE
Q 000671 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQL 1221 (1361)
Q Consensus 1142 l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nV 1221 (1361)
.+..+.++.|.+..++.|...+..++..+...+..++....|.||+.++++.+++... ...+ .++..|+|+|+||
T Consensus 260 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~I~f~~v 334 (567)
T COG1132 260 LVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKDTIGSIEFENV 334 (567)
T ss_pred HHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCCCCCeEEEEEE
Confidence 4457789999999999999999999999999999999999999999999987665321 1111 3456789999999
Q ss_pred EEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCccc
Q 000671 1222 KIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301 (1361)
Q Consensus 1222 s~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~ 1301 (1361)
+|+|+++. +||+|+||+|+|||+||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++|||||+
T Consensus 335 sf~y~~~~-~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~ 413 (567)
T COG1132 335 SFSYPGKK-PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPL 413 (567)
T ss_pred EEEcCCCC-ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccce
Confidence 99997643 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCCC-CCHHHHHHHHhhCcCCC-CCCc--ccccCCchhhhhhcccccccee
Q 000671 1302 LFRGSVRTNLDPLGL-YSDDEIWKVSQLTPNSR-NSRI--DIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1302 LF~GTIR~NLdP~~~-~sDeeI~~AL~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
||+||||+||++.++ +||||+++|+++|+-.. -... |.|+..++.|.++|.||||++.
T Consensus 414 LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 414 LFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred eecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 999999999998765 79999999999993111 1111 6788888999999999999975
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=538.99 Aligned_cols=447 Identities=20% Similarity=0.234 Sum_probs=365.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCCc--h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000671 907 LAQSGFVGLQAAATYWLAYAIQI--PKIT--S-GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKA 981 (1361)
Q Consensus 907 ~~~~~~~~~~~~~~~wl~~~~~~--~~~~--~-~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~a 981 (1361)
++.++...+.+..++.+...++. +... . ..+...++++.++..++.+++.+.....+.+...+++.+++++++++
T Consensus 143 ~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~ 222 (686)
T TIGR03797 143 AMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRL 222 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444445556666666555442 1111 1 12234455556667788889999999999999999999999999999
Q ss_pred CCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 982 PMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARE 1061 (1361)
Q Consensus 982 p~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~ 1061 (1361)
|++||++.++|++++|++ |++.+++.+...+...+...+.+++.++++++.+|++.++++.+++++..+..++.+..++
T Consensus 223 ~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~ 301 (686)
T TIGR03797 223 PVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVR 301 (686)
T ss_pred CHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 8999998888777666666666777788888999998887776666655555555555555
Q ss_pred HHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Q 000671 1062 LIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-L 1140 (1361)
Q Consensus 1062 l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~-~ 1140 (1361)
..+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..+.......|......++..+..+++.++ +
T Consensus 302 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 381 (686)
T TIGR03797 302 KERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAI 381 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666778999999999999999999999999999999999888888888777787766666655444333333 3
Q ss_pred hhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEE
Q 000671 1141 VLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQ 1220 (1361)
Q Consensus 1141 vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~n 1220 (1361)
.++..|.++.|.+..+.+++..+..|+..+...+.+++....+.+|+.++++.|+|.+. +..++ .+..|.|+|+|
T Consensus 382 ~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~~--~~~~~~I~~~n 456 (686)
T TIGR03797 382 SLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTDP--GKLSGAIEVDR 456 (686)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCCC--CCCCceEEEEE
Confidence 45568999999999999999999999999999999999999999999999987766431 11111 23468999999
Q ss_pred EEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcc
Q 000671 1221 LKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEP 1300 (1361)
Q Consensus 1221 Vs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp 1300 (1361)
|+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+|||+|+++++.+++|++|++|||||
T Consensus 457 vsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~ 536 (686)
T TIGR03797 457 VTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNG 536 (686)
T ss_pred EEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCC
Confidence 99999766667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhcCCCCCCCHHHHHHHHhhCcCC---CCCCcccccCCchhhhhhcccccccee
Q 000671 1301 TLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNS---RNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1301 ~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+||+|||||||..+++++|||+|+|++.++-. ..---|+|+.-++.|.|+|.||||++.
T Consensus 537 ~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRia 598 (686)
T TIGR03797 537 RLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLL 598 (686)
T ss_pred ccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 99999999999876668999999999998632 233347788888999999999999974
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-52 Score=528.35 Aligned_cols=466 Identities=17% Similarity=0.114 Sum_probs=361.2
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CC--Cc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI---PK--IT-SGILIGVYAGVSTASAVFVYFRSFFA 959 (1361)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~---~~--~~-~~~~l~iy~~l~~~~~i~~~~~~~~~ 959 (1361)
++.+++|+++.++.. ++.+++.++...+.+..++.+...++. +. .. ...++.+++++.++..++.+++.++.
T Consensus 10 ~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T PRK11174 10 TRWLKQQSKPAKRWL--NLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVG 87 (588)
T ss_pred hHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667776554432 233333344445555566666554432 11 11 11233445555667778888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000671 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1361)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l 1039 (1361)
...+.+...+++.++++++++.|.+||++.++|++++|+++|++.++..+...+..++..++..++.++++++++|.+.+
T Consensus 88 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 167 (588)
T PRK11174 88 FKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGL 167 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888888888888888888889999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000671 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1361)
Q Consensus 1040 v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1361)
+++..+++..++..++.+..++..+...+..+.+.+++.|+++|+++||+|++|+++.+++.+..++..+..........
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK11174 168 ILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAF 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666666777777777777777788899999999999999999999999999999988887777666555555
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhhhhcCCccCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000671 1120 WLILRVEALQNLTLFTAAL-FLVLIPRGYVAPGLV---------GLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189 (1361)
Q Consensus 1120 wl~~rl~~l~~l~~~~~~~-~~vl~~~g~is~g~~---------gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e 1189 (1361)
+......++..+..+++.+ ++... .|.++.|.+ .+++.++..+..|+..+...+.++.....|.+|+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 248 LSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444444433322222 22222 255555532 233356677889999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC
Q 000671 1190 FMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP 1269 (1361)
Q Consensus 1190 ~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep 1269 (1361)
+++.|++.+. ++. .+...+..++|+|+||+|.|.++ ++||+|+||+|+|||++||||+||||||||+++|.|+| |
T Consensus 327 ~l~~~~~~~~--~~~-~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p 401 (588)
T PRK11174 327 FLETPLAHPQ--QGE-KELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P 401 (588)
T ss_pred HHcCCCcccC--CCc-cccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 9987765321 111 11111235689999999988655 45999999999999999999999999999999999999 9
Q ss_pred CCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCcccccCCch
Q 000671 1270 AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRIDIDFPTFN 1345 (1361)
Q Consensus 1270 ~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~ 1345 (1361)
++|+|++||+|+++++.+++|++|++|||||+||+|||||||...+ +++|||+++|++.|+-.. +---|+|+..++
T Consensus 402 ~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge 481 (588)
T PRK11174 402 YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGD 481 (588)
T ss_pred CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccccccc
Confidence 9999999999999999999999999999999999999999997553 599999999999985321 222267888999
Q ss_pred hhhhhcccccccee
Q 000671 1346 KFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1346 ~~~~~~~~~~~~~~ 1359 (1361)
.|+++|.||||++.
T Consensus 482 ~G~~LSGGQrQRia 495 (588)
T PRK11174 482 QAAGLSVGQAQRLA 495 (588)
T ss_pred CCCCCCHHHHHHHH
Confidence 99999999999974
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-52 Score=539.78 Aligned_cols=468 Identities=18% Similarity=0.187 Sum_probs=372.2
Q ss_pred cHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCch---hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 885 GWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKITS---GILIGVYAGVSTASAVFVYFRSFFA 959 (1361)
Q Consensus 885 ~~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~--~~~~~---~~~l~iy~~l~~~~~i~~~~~~~~~ 959 (1361)
+++.++.|++..+... ...+++.++..++.++.++++...++. +.... ..+...++++.++..++.+++.++.
T Consensus 143 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (708)
T TIGR01193 143 SLLKFIPLITRQKKLI--VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLL 220 (708)
T ss_pred hHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777776544332 233333444455666777777766653 11111 1122334445566777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000671 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1361)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l 1039 (1361)
...+.+...+++.++++++++.|++||+++++|++++|++ |.+.+...+...+...+..++.+++.++++++.+|++++
T Consensus 221 ~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 299 (708)
T TIGR01193 221 NVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFL 299 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999998 888888877766666666666777777788889999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000671 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1361)
Q Consensus 1040 v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1361)
+++..++++..+...+.+..++..+......+...+++.|+++|+.|||+||.|+++.+++.+..++..+..+.......
T Consensus 300 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (708)
T TIGR01193 300 LSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQ 379 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777777777888888888888899999999999999999999999999998888877776665555444
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC
Q 000671 1120 WLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP 1198 (1361)
Q Consensus 1120 wl~~rl~~l~~l~~~~~-~~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~ 1198 (1361)
+......++..+..+++ .+.+.++..|.+++|.+.++.+++..+..|+..+...+.+++....+++|+.++++.|+|.+
T Consensus 380 ~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 459 (708)
T TIGR01193 380 GQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI 459 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 44433333333322222 22234556899999999999999999999999999999999999999999999999887753
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcC
Q 000671 1199 AIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1361)
Q Consensus 1199 ~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDG 1278 (1361)
.. ......++..|.|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+|||
T Consensus 460 ~~---~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg 535 (708)
T TIGR01193 460 NK---KKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG 535 (708)
T ss_pred cc---ccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECC
Confidence 21 1112234567899999999999644 4699999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHHhhcCceecCcccccccchhhhcCCC--CCCCHHHHHHHHhhCcCC---CCCCcccccCCchhhhhhccc
Q 000671 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--GLYSDDEIWKVSQLTPNS---RNSRIDIDFPTFNKFCCRIIK 1353 (1361)
Q Consensus 1279 vDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~--~~~sDeeI~~AL~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 1353 (1361)
+|+++++.+++|++|++|||||+||+|||||||..+ .+++|||+++|++.++-. .+--.|+|+.-++.|.++|.|
T Consensus 536 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG 615 (708)
T TIGR01193 536 FSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615 (708)
T ss_pred EEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence 999999999999999999999999999999999854 358999999999998532 233346788889999999999
Q ss_pred ccccee
Q 000671 1354 TKQLVT 1359 (1361)
Q Consensus 1354 ~~~~~~ 1359 (1361)
|||++.
T Consensus 616 QrQRia 621 (708)
T TIGR01193 616 QKQRIA 621 (708)
T ss_pred HHHHHH
Confidence 999974
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-52 Score=537.42 Aligned_cols=472 Identities=17% Similarity=0.157 Sum_probs=379.4
Q ss_pred cHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCc-h--hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 885 GWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKIT-S--GILIGVYAGVSTASAVFVYFRSFFA 959 (1361)
Q Consensus 885 ~~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~--~~~~-~--~~~l~iy~~l~~~~~i~~~~~~~~~ 959 (1361)
.++.++.+++..++.. ...+++.++...+.++.++.+...++. +... . ..+...++++.++..++.+++.++.
T Consensus 141 ~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (710)
T TIGR03796 141 LLRALWRRLRGSRGAL--LYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYL 218 (710)
T ss_pred cHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777776544322 222333334445555666666655442 1111 1 1223344555666778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000671 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1361)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l 1039 (1361)
...+.+...+++.++++++++.|++||++.++|++++|++.| +.+...+...+..++..++.+++.++++++.+|++.+
T Consensus 219 ~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 297 (710)
T TIGR03796 219 RRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTL 297 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 6788888877777888888888888899999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000671 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1361)
Q Consensus 1040 v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1361)
+.+..++++.++..++.+..++..+......+...+++.|+++|+.+||+++.|+.+.+++.+..++..+..........
T Consensus 298 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (710)
T TIGR03796 298 IGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQ 377 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777777777777777776777778889999999999999999999999999999888888777777776677
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC
Q 000671 1120 WLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP 1198 (1361)
Q Consensus 1120 wl~~rl~~l~~l~~~~~~~~-~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~ 1198 (1361)
|......++..+..+++.++ ++++..|.++.|.+.++++++..+..|+..+...+.+++....+.+|+.++++.|+|.+
T Consensus 378 ~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 457 (710)
T TIGR03796 378 ILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPL 457 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 76666666555444333333 34556899999999999999999999999999999999999999999999998877753
Q ss_pred CCCCC--C-CCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEE
Q 000671 1199 AIVED--K-RPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275 (1361)
Q Consensus 1199 ~~~~~--~-~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~ 1275 (1361)
..... . .....++.+|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 537 (710)
T TIGR03796 458 LEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537 (710)
T ss_pred cccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 21100 0 01111345789999999999987666799999999999999999999999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhc
Q 000671 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRI 1351 (1361)
Q Consensus 1276 IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~ 1351 (1361)
+||+|+++++.+++|++|++|||||+||+|||||||..++ +++|+|+++|++.++-.. +---|+|+.-++.|.|+|
T Consensus 538 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LS 617 (710)
T TIGR03796 538 FDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLS 617 (710)
T ss_pred ECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCC
Confidence 9999999999999999999999999999999999998654 589999999999985321 233477888889999999
Q ss_pred ccccccee
Q 000671 1352 IKTKQLVT 1359 (1361)
Q Consensus 1352 ~~~~~~~~ 1359 (1361)
.||||++.
T Consensus 618 GGQrQRia 625 (710)
T TIGR03796 618 GGQRQRLE 625 (710)
T ss_pred HHHHHHHH
Confidence 99999974
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=528.34 Aligned_cols=467 Identities=20% Similarity=0.205 Sum_probs=371.1
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCch--h-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP--KITS--G-ILIGVYAGVSTASAVFVYFRSFFAA 960 (1361)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~--~-~~l~iy~~l~~~~~i~~~~~~~~~~ 960 (1361)
++.++.+++..++.. ...+++.++...+.++.++.+...++.. .... . .+..+++++.++..++.+++.++..
T Consensus 135 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 135 KHWFWSTLKESWPLY--RDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred chHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666444322 2223333344455566677666655421 1111 1 1222344445567788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000671 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1361)
Q Consensus 961 ~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv 1040 (1361)
+.+.+...+++.++++|+++.|++| ++.++|++++|+ +|++.+...+...+...+..++.+++.++++++++|+++++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999998 788999999999 79999999888777777777777777778888899998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000671 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1361)
Q Consensus 1041 ~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1361)
.+..++++..+..++.+..++..+......+...+++.|+++|+.+||+|+.|+.+.+++.+..++..+..+.....+.+
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666667777777777777778888999999999999999999999999999999998887777776666666
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000671 1121 LILRVEALQNLTLFTAAL-FLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1361)
Q Consensus 1121 l~~rl~~l~~l~~~~~~~-~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~ 1199 (1361)
.....+++..+..+++.+ .+.++..|.+++|.+.++++|...+..|+..+...+.+++...++.+|+.++++.|+|.+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 555555554443332222 2344568899999999999999999999999999999999999999999999998776432
Q ss_pred CCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCe
Q 000671 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1361)
Q Consensus 1200 ~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGv 1279 (1361)
. .......+.+|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|.+||+
T Consensus 451 ~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 527 (694)
T TIGR03375 451 G---TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV 527 (694)
T ss_pred C---CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 1 1111112356899999999999765567999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCC---CCCCcccccCCchhhhhhccccc
Q 000671 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNS---RNSRIDIDFPTFNKFCCRIIKTK 1355 (1361)
Q Consensus 1280 DI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 1355 (1361)
|+++++++++|+++++|||||++|+|||||||...+ +++|||+++|++.++-. ..---|+|+.-++.|.|+|.|||
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQr 607 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQR 607 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHH
Confidence 999999999999999999999999999999998655 38999999999998521 12233677888899999999999
Q ss_pred ccee
Q 000671 1356 QLVT 1359 (1361)
Q Consensus 1356 ~~~~ 1359 (1361)
|++.
T Consensus 608 QRla 611 (694)
T TIGR03375 608 QAVA 611 (694)
T ss_pred HHHH
Confidence 9874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=518.41 Aligned_cols=447 Identities=20% Similarity=0.270 Sum_probs=353.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--CCc--hhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 906 VLAQSGFVGLQAAATYWLAYAIQIP--KIT--SGIL---IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSI 978 (1361)
Q Consensus 906 ~~~~~~~~~~~~~~~~wl~~~~~~~--~~~--~~~~---l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~i 978 (1361)
+++.++...+.+..+++++..++.. ... .... +.+++++.++..++.+++.+.....+.+...+++.++++++
T Consensus 29 ~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 108 (592)
T PRK10790 29 VLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAA 108 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666677776665421 111 1111 22244444566677888888999999999999999999999
Q ss_pred hcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 979 FKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIAT 1058 (1361)
Q Consensus 979 l~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~ 1058 (1361)
+++|.+||++.++|++++|+++|++.++..+...+..++..++.+++.++++++.+|.+.++.+..+++...+...+.+.
T Consensus 109 ~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~ 188 (592)
T PRK10790 109 LRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRY 188 (592)
T ss_pred HcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888888888888999988766554444444444445555
Q ss_pred HHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000671 1059 ARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWL-ILRVEALQNLTLFTAA 1137 (1361)
Q Consensus 1059 sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl-~~rl~~l~~l~~~~~~ 1137 (1361)
.+...+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..+.......+. .....++..+..+++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (592)
T PRK10790 189 STPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLL 268 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556556667788999999999999999999999999999988877666655544443332 2223333332222221
Q ss_pred HHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEE
Q 000671 1138 LFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIE 1217 (1361)
Q Consensus 1138 ~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~ 1217 (1361)
+.......|.++.|.+.+++.|+..+..|+..+...+.++++...+.+|+.++++.+++++. .. ..++.+|+|+
T Consensus 269 ~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~---~~~~~~~~i~ 342 (592)
T PRK10790 269 MLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---ND---DRPLQSGRID 342 (592)
T ss_pred HHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CC---ccCCCCCeEE
Confidence 11112357889999999999999999999999999999999999999999999986654321 11 1234467899
Q ss_pred EEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceec
Q 000671 1218 LRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIP 1297 (1361)
Q Consensus 1218 f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIp 1297 (1361)
|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||+||++++.+++|++|++||
T Consensus 343 ~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~ 421 (592)
T PRK10790 343 IDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQ 421 (592)
T ss_pred EEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEc
Confidence 99999999754 45999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1298 QEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1298 Qdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
|||+||+||||+||..++.++|+|+++|++.++-.. .---|+|+.-++.|.++|.||||++.
T Consensus 422 Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia 486 (592)
T PRK10790 422 QDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486 (592)
T ss_pred cCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 999999999999999888889999999999986332 12236788888999999999999974
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-51 Score=512.22 Aligned_cols=414 Identities=17% Similarity=0.138 Sum_probs=345.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHH
Q 000671 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1361)
Q Consensus 941 y~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~ 1020 (1361)
+.++.++..++.++..++.+..+.+...++|.++++++++.|++||++.++|++++|+++|++.++..+...+..++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667788888889999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHH
Q 000671 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVR-FVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN 1099 (1361)
Q Consensus 1021 ~~~i~~i~v~~~~~~~l~lv~ip~~~~~~-~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~ 1099 (1361)
+.+++.++++++.+|++.++++..+++.. .+..++.+..++..+..++..+.+.+.+.|+++|+++||+|+.|+++.++
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 88999999999999999877654444333 34455666667777777788889999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000671 1100 YLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFT-LTGTQVFLSRWYCYLA 1178 (1361)
Q Consensus 1100 ~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~~vl~~~g~is~g~~gl~l~ya~~-l~~~l~~l~~~~~~le 1178 (1361)
+.+..++..+..........+.....+++..+..+++.+++.....|.++.|.+..++.|+.. ...++..+...+.+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~ 305 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLG 305 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888777777766666666665554433333322223688889988887777644 4467777888899999
Q ss_pred HHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHH
Q 000671 1179 NYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT 1258 (1361)
Q Consensus 1179 ~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKST 1258 (1361)
+...|.+|+.++++.++|.+.. ...++ .+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+|||||||
T Consensus 306 ~~~~s~~ri~~ll~~~~~~~~~--~~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKST 381 (574)
T PRK11160 306 QVIASARRINEITEQKPEVTFP--TTSTA--AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKST 381 (574)
T ss_pred HHHHHHHHHHHHHhCCCCCCCC--cccCC--CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHH
Confidence 9999999999999877653211 11111 1346789999999999765456999999999999999999999999999
Q ss_pred HHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCC---CC
Q 000671 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNS---RN 1334 (1361)
Q Consensus 1259 L~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~---~~ 1334 (1361)
|+++|.|+|+|++|+|++||+|+++++.+++|++|++|||||+||+|||||||.... +.+|||+++|++.++-. ..
T Consensus 382 L~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~ 461 (574)
T PRK11160 382 LLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED 461 (574)
T ss_pred HHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC
Confidence 999999999999999999999999999999999999999999999999999997433 58999999999998632 23
Q ss_pred CCcccccCCchhhhhhcccccccee
Q 000671 1335 SRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1335 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
--|+|+.-++.|+++|.||||++.
T Consensus 462 -p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 462 -DKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred -ccccCchhcCCCCCCCHHHHHHHH
Confidence 557899999999999999999974
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=507.02 Aligned_cols=447 Identities=16% Similarity=0.122 Sum_probs=359.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC---CCc-h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000671 908 AQSGFVGLQAAATYWLAYAIQIP---KIT-S--GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKA 981 (1361)
Q Consensus 908 ~~~~~~~~~~~~~~wl~~~~~~~---~~~-~--~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~a 981 (1361)
+.++..++.+..++.++..++.. ... . ..+++.+++++++..++.+++.++....+.+...+++.++++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~ 90 (529)
T TIGR02857 11 LGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAAL 90 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344445555666655554421 111 1 12344555666777888889999999999999999999999999999
Q ss_pred CCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 982 PMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARE 1061 (1361)
Q Consensus 982 p~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~ 1061 (1361)
|.+||++.++|++++|+++|++.++..+...+..++..++.+++.+++++..+|.+.++++..+++..++..++.+..++
T Consensus 91 ~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~ 170 (529)
T TIGR02857 91 GPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQA 170 (529)
T ss_pred CchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888888888888888888888899988776665555544444555555555
Q ss_pred HHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Q 000671 1062 LIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFL 1140 (1361)
Q Consensus 1062 l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~-~~~~ 1140 (1361)
..+......+...+++.|+++|+++||+|+.|+++.+++.+..++..+..........+.....+++..+..+++ .+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (529)
T TIGR02857 171 AARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIG 250 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666778899999999999999999999999999999888877776666666666666565555443332 2233
Q ss_pred hhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEE
Q 000671 1141 VLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQ 1220 (1361)
Q Consensus 1141 vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~n 1220 (1361)
+.+..|.++.|.+.+++.|+..+..|+..+...+..++....+.+|+.++++.+++... .. +...+..|.|+|+|
T Consensus 251 ~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~--~~~~~~~~~i~~~~ 325 (529)
T TIGR02857 251 FRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KA--PVTAAPAPSLEFSG 325 (529)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---Cc--CCCCCCCCeEEEEE
Confidence 34447899999999999999999999999999999999999999999999985543211 11 11123347899999
Q ss_pred EEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcc
Q 000671 1221 LKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEP 1300 (1361)
Q Consensus 1221 Vs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp 1300 (1361)
|+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++|+++++|||||
T Consensus 326 v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~ 405 (529)
T TIGR02857 326 LSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHP 405 (529)
T ss_pred EEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCC
Confidence 99999765556999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1301 TLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1301 ~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++|+|||||||.... +++|+|+++|++.++-.. +-.-|+|+..++.|.++|.||||++.
T Consensus 406 ~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~ 468 (529)
T TIGR02857 406 FLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLA 468 (529)
T ss_pred cccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHH
Confidence 999999999997543 579999999999986322 22236789999999999999999974
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-50 Score=507.05 Aligned_cols=449 Identities=17% Similarity=0.248 Sum_probs=378.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--CC-c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000671 906 VLAQSGFVGLQAAATYWLAYAIQIP--KI-T--SGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFK 980 (1361)
Q Consensus 906 ~~~~~~~~~~~~~~~~wl~~~~~~~--~~-~--~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ 980 (1361)
+++.++..++.+..+++++..++.. .. . ...+.++++++.++..++.+++.++....+.+....++..+++++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~ 99 (571)
T TIGR02203 20 GVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLG 99 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334444455555666665544321 11 1 11223456667777788889999999999999999999999999999
Q ss_pred CCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 981 APMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAR 1060 (1361)
Q Consensus 981 ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr 1060 (1361)
.|.++|++.+.|++++|+++|++.++..+...+..++..++.+++.++++++.+|++.++.+.+.++..++..++.+..+
T Consensus 100 ~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~ 179 (571)
T TIGR02203 100 LPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLR 179 (571)
T ss_pred CCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888888888888888888888
Q ss_pred HHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000671 1061 ELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF- 1139 (1361)
Q Consensus 1061 ~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~- 1139 (1361)
+..+......++..+++.|+++|+.+||+++.++++.+++.+..+...+..........+.....+++..+...++.++
T Consensus 180 ~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 259 (571)
T TIGR02203 180 RISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIA 259 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999999999999999999999999999999999888887777777777766666555443333333
Q ss_pred hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEE
Q 000671 1140 LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELR 1219 (1361)
Q Consensus 1140 ~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~ 1219 (1361)
+..+..|.+++|.+..+++|+..+..|+..+...+..++....+.+|+.++++.++|.+. +..+.. +..|+|+|+
T Consensus 260 ~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~--~~~~~i~~~ 334 (571)
T TIGR02203 260 LFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT---GTRAIE--RARGDVEFR 334 (571)
T ss_pred HHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCCCC--CCCCeEEEE
Confidence 345568999999999999999999999999999999999999999999999987666432 111111 245789999
Q ss_pred EEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCc
Q 000671 1220 QLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQE 1299 (1361)
Q Consensus 1220 nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQd 1299 (1361)
||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+++|++|+|++||+|+++++.+++|+++++||||
T Consensus 335 ~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 414 (571)
T TIGR02203 335 NVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQD 414 (571)
T ss_pred EEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccC
Confidence 99999976555799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCCCC--CCCHHHHHHHHhhCcCC---CCCCcccccCCchhhhhhcccccccee
Q 000671 1300 PTLFRGSVRTNLDPLG--LYSDDEIWKVSQLTPNS---RNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1300 p~LF~GTIR~NLdP~~--~~sDeeI~~AL~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
|++|+||||+||.-++ +++|+|+++|++.++-. .+-.-|+|+.-++.|.++|.||||++.
T Consensus 415 ~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRia 479 (571)
T TIGR02203 415 VVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLA 479 (571)
T ss_pred cccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 9999999999997553 68999999999998633 233346888889999999999999864
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-50 Score=516.49 Aligned_cols=468 Identities=19% Similarity=0.245 Sum_probs=372.0
Q ss_pred cHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCc--h-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 885 GWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP--KIT--S-GILIGVYAGVSTASAVFVYFRSFFA 959 (1361)
Q Consensus 885 ~~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~--~-~~~l~iy~~l~~~~~i~~~~~~~~~ 959 (1361)
+++.++.+++..++.. ...+++.++...+.++.++.+...++.- ... . ..+...++++.++..++.+++.++.
T Consensus 126 ~~~~~~~~~~~~~~~~--~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQF--REVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred cHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666443322 2223333344445556666666555421 111 1 1223344555666778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000671 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1361)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l 1039 (1361)
...+.+...+++.+++++++++|++||++.++|++++|+ +|++.+.+.+...+..++..++.+++.++++++.+|++++
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 282 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTG 282 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 6999999988777766666666666667788899999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000671 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1361)
Q Consensus 1040 v~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1361)
+++..++++..+..+..+..++..+...+..+...+++.|+++|+.+||+||.|+++.+++.+..++..+..+.......
T Consensus 283 i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (694)
T TIGR01846 283 VVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666655555555555555555556667888999999999999999999999999999999988888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC
Q 000671 1120 WLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP 1198 (1361)
Q Consensus 1120 wl~~rl~~l~~l~~~~~~~~-~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~ 1198 (1361)
+.....+++..+..+++.++ +.++..|.++.|.+.++.+++..+..|+..+...+.+++....+.+|+.++++.|+|.+
T Consensus 363 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 442 (694)
T TIGR01846 363 IAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPR 442 (694)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 77766666655544433333 34556899999999999999999999999999999999999999999999998877643
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcC
Q 000671 1199 AIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1361)
Q Consensus 1199 ~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDG 1278 (1361)
.. +..+ ..+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+|||
T Consensus 443 ~~--~~~~--~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 443 SA--GLAA--LPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred CC--CCCC--CCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 21 1111 1123588999999999987666799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCC---CCCCcccccCCchhhhhhcccc
Q 000671 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNS---RNSRIDIDFPTFNKFCCRIIKT 1354 (1361)
Q Consensus 1279 vDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 1354 (1361)
+|+++++.+++|+++++|||||++|+|||||||...+ +++|+++++|++.++-. .+---|+|+..++.|.++|.||
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 9999999999999999999999999999999997543 58999999999998632 1223367888899999999999
Q ss_pred cccee
Q 000671 1355 KQLVT 1359 (1361)
Q Consensus 1355 ~~~~~ 1359 (1361)
||++.
T Consensus 599 ~qri~ 603 (694)
T TIGR01846 599 RQRIA 603 (694)
T ss_pred HHHHH
Confidence 99974
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-50 Score=507.71 Aligned_cols=414 Identities=17% Similarity=0.232 Sum_probs=353.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHH
Q 000671 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1361)
Q Consensus 941 y~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~ 1020 (1361)
++++.++..++.+++.++....+.+....++..+++++++.|.++|++...|++++|+++|++.+...+...+..++..+
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T PRK11176 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777788888888899999999999999999999999999999999999999999999999888888888899
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHH
Q 000671 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNY 1100 (1361)
Q Consensus 1021 ~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~ 1100 (1361)
+.+++.++++++.+|.++++++..++++.++..+..+..++..+......+...+++.|.++|+.+||+|+.++++.+++
T Consensus 151 ~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~ 230 (582)
T PRK11176 151 ASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF 230 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHH
Confidence 99999999999999998887776666666666666666677766667778889999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 1101 LKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLAN 1179 (1361)
Q Consensus 1101 ~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~-~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~ 1179 (1361)
.+..+...+..........|.....+++..+...++.++ +..+..|.+++|.+.+++++..++..|+..+...+..+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 310 (582)
T PRK11176 231 DKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888887777777777776666655544333332 3445678999999999999999999999999999999999
Q ss_pred HhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHH
Q 000671 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259 (1361)
Q Consensus 1180 ~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL 1259 (1361)
...+.+|+.++++.++|.+. +.. ...|..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||
T Consensus 311 ~~~~~~ri~~~~~~~~~~~~---~~~--~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTL 385 (582)
T PRK11176 311 GMAACQTLFAILDLEQEKDE---GKR--VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTI 385 (582)
T ss_pred HHHHHHHHHHHhcCCCcCCC---CCc--CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHH
Confidence 99999999999987665321 111 1124457899999999997665679999999999999999999999999999
Q ss_pred HHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCC--CCCCHHHHHHHHhhCcCC---CC
Q 000671 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--GLYSDDEIWKVSQLTPNS---RN 1334 (1361)
Q Consensus 1260 ~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~--~~~sDeeI~~AL~~~~~~---~~ 1334 (1361)
+++|.|+|+|++|+|++||+|+++++.+++|++|++|||||++|+||||+||.-. +.++|+|+++|++.++-. .+
T Consensus 386 l~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~ 465 (582)
T PRK11176 386 ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINK 465 (582)
T ss_pred HHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999732 348999999999998522 22
Q ss_pred CCcccccCCchhhhhhcccccccee
Q 000671 1335 SRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1335 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
---|+|+..++.|.++|.||||++.
T Consensus 466 lp~Gldt~ig~~g~~LSGGqrQRi~ 490 (582)
T PRK11176 466 MDNGLDTVIGENGVLLSGGQRQRIA 490 (582)
T ss_pred cccccCceeCCCCCcCCHHHHHHHH
Confidence 2336788888999999999999864
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-49 Score=499.21 Aligned_cols=504 Identities=16% Similarity=0.148 Sum_probs=362.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 278 ENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQE-GLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1361)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~-~~~~-g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~~ 355 (1361)
.++...++.++.+.+....|.+...+++.+.+.+. .... .+.+++++++. ++......|...++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~----~~~~~~~~~~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPA----SFINSAIKYLLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788888999999999999886543321 1111 11122222222 333333334466677778888888
Q ss_pred HHHHHHhcCCcc----cCCCCCHHHHHHHHHhHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000671 356 AVYQKQLKLSSL----GRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLGALPG-LVLFLI 429 (1361)
Q Consensus 356 ~Iy~K~L~ls~~----~~~~~~~G~ivNlms~D~~ri~~~~-~~~~~~w~~plqi~va~~~L~~~lG~~~l~g-l~v~~l 429 (1361)
.++++.++-... ..++ .+|++.+.++.|++.+.+.. ..+..+...++.++.+++.|+..++|....+ ++.+.+
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 777777663211 1122 57999999999999998754 3455666777788878888887677654332 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM 509 (1361)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~ 509 (1361)
.+.+...+.+.+.+..++..+..++-....+|.++|+++||+|+-|+...++.++.-++-.+..++.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34445556777788888888889999999999999999999999998877766554444333333332222221111111
Q ss_pred HH----HHHHHHHHHHHHHhCC----CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000671 510 SP----TIISSVIFLGCALTGS----APLNASTIFTV----LATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE 577 (1361)
Q Consensus 510 ~p----~~v~~~~f~~~~l~~~----~~Lt~~~~Ft~----l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e 577 (1361)
.. ..+..+..+..++... +.+|.+..+.. ..++..+..|+..+...+..+.++.++.+|+.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111111112122221 46787754432 334667789999999999999999999999999996422
Q ss_pred C-CC-----chhhh-----------------ccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCC
Q 000671 578 L-NN-----DDVRR-----------------ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGA 634 (1361)
Q Consensus 578 ~-~~-----~~~~~-----------------~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~Gs 634 (1361)
. +. ..... .......+.|+++|++|+|+++ +++|+|+||++++||+++|+|||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceEEECCCCEEEEECCCCC
Confidence 1 10 00000 0001123469999999999743 3699999999999999999999999
Q ss_pred CHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCCCCCHHHHhhcCC--------CCCHHHHHHHHHHhcchHHHhc
Q 000671 635 GKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGK--------PMDKARYDKAIKACALDKDINN 704 (1361)
Q Consensus 635 GKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~~~ti~eni~~g~--------~~~~~~~~~~~~~~~l~~dl~~ 704 (1361)
|||||+++|+|+++|++|+|.+++ +++|+||+|+++++|++|||.++. ..++++..++++.+++.+.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999998864 699999999999999999999874 2456678899999999888877
Q ss_pred CCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh
Q 000671 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784 (1361)
Q Consensus 705 l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~ 784 (1361)
|.|.+|..+ .+.+||||||||++||||++++|++++||||||+||+++++.+.+.+.+ .|+|+|++||+++.++.
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKY 644 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHh
Confidence 889889876 5789999999999999999999999999999999999999998775533 38999999999999999
Q ss_pred cCeEEEEeC
Q 000671 785 VDRILVLEG 793 (1361)
Q Consensus 785 ~d~i~~l~~ 793 (1361)
||++++|++
T Consensus 645 ~d~il~l~~ 653 (659)
T TIGR00954 645 HEYLLYMDG 653 (659)
T ss_pred CCEEEEEeC
Confidence 999999973
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-49 Score=497.30 Aligned_cols=469 Identities=20% Similarity=0.232 Sum_probs=369.3
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 887 KPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP--KIT---SGILIGVYAGVSTASAVFVYFRSFFAAH 961 (1361)
Q Consensus 887 ~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~---~~~~l~iy~~l~~~~~i~~~~~~~~~~~ 961 (1361)
+.+++|++..+... .+.+++.++...+.+..++.+....+.. ... ....+.+++++.++..++.+++.++...
T Consensus 7 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 7 AALWPFVRPYRGRV--LAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665433222 2233333444455556666665554421 111 1122334445555566677788888899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000671 962 LGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVA 1041 (1361)
Q Consensus 962 ~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ 1041 (1361)
.+.+....++..+++++++.|.++|+....|++++|+++|++.++..+...+..++..++.+++.+++++..+|++.+++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888888888888888999999987776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000671 1042 IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWL 1121 (1361)
Q Consensus 1042 ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1121 (1361)
+..+++...+..++.+..+...+.....+....+++.|+++|+++||+|+.++++.+++.+..+...+..........|+
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66556555566666677777777777888889999999999999999999999999999999988777766666666666
Q ss_pred HHHHHHHHHHHHHHHH-HHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCC
Q 000671 1122 ILRVEALQNLTLFTAA-LFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAI 1200 (1361)
Q Consensus 1122 ~~rl~~l~~l~~~~~~-~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~ 1200 (1361)
......+..+..++.. +.+..+..|.+++|.+..+..|+..+..|+..+...+.++.+...+.+|+.++++.++|.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 5554444333222222 223445678999999999999999999999999999999999999999999999876553211
Q ss_pred CCCCCCCCCCCCcceEEEEEEEEEeCCCC-CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCe
Q 000671 1201 VEDKRPPSSWPFKGRIELRQLKIRYRPNA-PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1361)
Q Consensus 1201 ~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~-~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGv 1279 (1361)
. ...+..+|..+.|+|+||+|+|+++. +++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||+
T Consensus 325 ~--~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~ 402 (576)
T TIGR02204 325 A--HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGV 402 (576)
T ss_pred C--CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 1 11112234567899999999997532 56999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhccccc
Q 000671 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTK 1355 (1361)
Q Consensus 1280 DI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 1355 (1361)
||++++.+++|++++++||||++|+|||||||...+ +.+|+++|++|+.++-.. .---|+|++-++.|+++|.|||
T Consensus 403 ~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~ 482 (576)
T TIGR02204 403 DLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482 (576)
T ss_pred EHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHH
Confidence 999999999999999999999999999999998543 478999999999986432 1123678888889999999999
Q ss_pred ccee
Q 000671 1356 QLVT 1359 (1361)
Q Consensus 1356 ~~~~ 1359 (1361)
|++.
T Consensus 483 Qrl~ 486 (576)
T TIGR02204 483 QRIA 486 (576)
T ss_pred HHHH
Confidence 9874
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=499.80 Aligned_cols=464 Identities=19% Similarity=0.247 Sum_probs=341.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1361)
Q Consensus 344 ~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L~~~lG~~~l~ 422 (1361)
..|++.-..|-..++++.++-+-.--+...+|+|.|..|.|++.+++... .+.......++++..+.+.-...-+..++
T Consensus 884 ~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~ 963 (1381)
T KOG0054|consen 884 KGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIA 963 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 34455555555666666666555444567899999999999999987544 33343344444443333332222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 423 GLVLFLICGLLNVPFAKILQKCQSEFM----IAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQL 498 (1361)
Q Consensus 423 gl~v~~l~~~l~~~~~~~~~~~q~~~m----~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~ 498 (1361)
.+++.+++. .+.++..+..++.. ..+.-=.+..+|.++|+-+|+.|+.|+.|.++-...-+.-.+.. .+
T Consensus 964 ~~pl~v~~~----~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~---f~ 1036 (1381)
T KOG0054|consen 964 IIPLGVIYY----FVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAF---FL 1036 (1381)
T ss_pred HHHHHHHHH----HHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHH---HH
Confidence 333333332 23333333333332 22344456789999999999999999999887665544432211 11
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000671 499 RKAYGTV----IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLL 574 (1361)
Q Consensus 499 ~~~~~~~----~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~ 574 (1361)
..+.+-. +-..+-.++..+++.. .+..++..+++.+=-+++.--.+..-+..+-.....+-.-.+|.+|+.+|.+
T Consensus 1037 ~~~a~RWla~Rle~ig~~~v~~~al~~-vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~ 1115 (1381)
T KOG0054|consen 1037 SISANRWLAVRLELLGNLVVLIAALFA-VLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTD 1115 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhc
Confidence 1111111 1011112222222221 2222222778887777777666666666666666677777899999999998
Q ss_pred ccCCCCchhhhc-cc--cCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCC
Q 000671 575 DHELNNDDVRRI-SL--QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651 (1361)
Q Consensus 575 ~~e~~~~~~~~~-~~--~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~ 651 (1361)
.++..+...+.. ++ -++++.|+|+|.+..|.++. +++|+||||+|++||+++|||++|||||||.++|.++.+|.+
T Consensus 1116 ~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~l-p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~ 1194 (1381)
T KOG0054|consen 1116 IPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNL-PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE 1194 (1381)
T ss_pred CCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCC-cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccC
Confidence 443222222111 22 24678999999999998873 589999999999999999999999999999999999999999
Q ss_pred cEEEEcC-------------eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCC
Q 000671 652 GTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1361)
Q Consensus 652 G~v~~~g-------------~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~ 718 (1361)
|+|.+|| +++.+||+|.+|+||+|.|+---.++.+++..+++|.|+|.+.++.+|+|-+++|.|+|.
T Consensus 1195 G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~ 1274 (1381)
T KOG0054|consen 1195 GEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGE 1274 (1381)
T ss_pred CeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCc
Confidence 9999998 599999999999999999999878899999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEE
Q 000671 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798 (1361)
Q Consensus 719 ~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~ 798 (1361)
|+|=||||-+|||||++++++|++|||+|+++|++|-..| ++.++...+++|||.+.|+++.+.++|||+|||+|+|+|
T Consensus 1275 N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lI-Q~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1275 NFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI-QKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVE 1353 (1381)
T ss_pred cCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHH-HHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEee
Confidence 9999999999999999999999999999999999998765 677888889999999999999999999999999999999
Q ss_pred ecChHHHHhcC-chHHHHHH
Q 000671 799 SGNYQELLLAG-TAFEQLVN 817 (1361)
Q Consensus 799 ~g~~~~l~~~~-~~~~~~~~ 817 (1361)
.|+|++|++++ ..|.+++.
T Consensus 1354 fdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1354 FDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred cCChHHHHhCCcchHHHHHH
Confidence 99999999774 45655544
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=444.66 Aligned_cols=411 Identities=23% Similarity=0.321 Sum_probs=319.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHH
Q 000671 400 SLALQLFLAIGVLFGVVGLGALPGLVLFLICGLL-NVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKF 478 (1361)
Q Consensus 400 ~~plqi~va~~~L~~~lG~~~l~gl~v~~l~~~l-~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f 478 (1361)
...+++.+..+++|+..||...+..++++++..+ .......-..++++..++..+.-....+.|-+-.++|.|+=|+.+
T Consensus 65 P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e 144 (497)
T COG5265 65 PTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYE 144 (497)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhh
Confidence 3457899999999999998655544444444332 222222223334443344344455678899999999999999887
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 479 KSLIESRREK----EFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPE 554 (1361)
Q Consensus 479 ~~~i~~~R~~----El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~ 554 (1361)
.++-.+..+. ++|......++......++... +... ......-+..+.+|.+...-.-++...+..|+..+..
T Consensus 145 ~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~--l~~~-m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~ 221 (497)
T COG5265 145 AVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTG--LRVM-MTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGF 221 (497)
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHH-HhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHH
Confidence 6665544433 3222111111111111111111 0011 1111112234789999988888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCchhhhcccc-CCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCC
Q 000671 555 ALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQ-KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVG 633 (1361)
Q Consensus 555 ~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~-~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~G 633 (1361)
....+-|+++..++..+.+..+-...+..+-.+.. ...+.|.|+|++|.|+++ +++|+++||++++|+.++|+|++|
T Consensus 222 ~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG 299 (497)
T COG5265 222 SYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESG 299 (497)
T ss_pred HHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCC
Confidence 99999999999999988775432111111111111 345679999999999875 589999999999999999999999
Q ss_pred CCHHHHHHHHhCCccCCCcEEEEcCe-------------EEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcch
Q 000671 634 AGKSSLLYAILGEIPKISGTVNLYGS-------------IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALD 699 (1361)
Q Consensus 634 sGKSTLl~~llg~~~~~~G~v~~~g~-------------iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~ 699 (1361)
+||||+++.|.+++++++|.|.++|+ ||.|||+..+||.|+..||.+|++ ..+++...+.++.++.
T Consensus 300 ~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~ 379 (497)
T COG5265 300 AGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIH 379 (497)
T ss_pred CcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhh
Confidence 99999999999999999999999983 999999999999999999999988 4577888999999999
Q ss_pred HHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCc
Q 000671 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1361)
Q Consensus 700 ~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 779 (1361)
+.++.+|+|.+|.|||+|-.|||||||||++||+++.+|+|++|||.|||||.|+++.|-. .++...+|+|.+++.|++
T Consensus 380 ~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~-~l~~~~~~rttlviahrl 458 (497)
T COG5265 380 DFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA-ALREVSAGRTTLVIAHRL 458 (497)
T ss_pred HHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH-HHHHHhCCCeEEEEeehh
Confidence 9999999999999999999999999999999999999999999999999999999999754 456667899999999999
Q ss_pred hHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHHH
Q 000671 780 EFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816 (1361)
Q Consensus 780 ~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 816 (1361)
+.+-.||.|+||+||+|+|.|+|++|++.++.|+++.
T Consensus 459 sti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw 495 (497)
T COG5265 459 STIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMW 495 (497)
T ss_pred hhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHh
Confidence 9999999999999999999999999999999988775
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-48 Score=485.61 Aligned_cols=465 Identities=17% Similarity=0.180 Sum_probs=358.1
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 888 PFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKI--TSGILIGVYAGVSTASAVFVYFRSFFAAHLGLK 965 (1361)
Q Consensus 888 ~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~~~--~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~ 965 (1361)
.+++|++..+.. +.+.+++.++..++.++.++.++..++.... ....++.+++++.++..+..++..........+
T Consensus 9 ~l~~~l~~~k~~--~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (585)
T TIGR01192 9 RALSYLNVHKNR--VLLIVIANITLAAITIAEPILFGRIIDAISSKSDVLPTLALWAGFGVFNTIAYVLVAREADRLAHG 86 (585)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566544332 2333344444555666667766665542111 111122222233333444444555555566666
Q ss_pred HHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000671 966 ASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAM 1045 (1361)
Q Consensus 966 ~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~ 1045 (1361)
...+++.+++++++++|++||+++++|++++|+++|++.+...+...+..++..++.+++.+++++..+|.++++++.++
T Consensus 87 ~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 166 (585)
T TIGR01192 87 RRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLG 166 (585)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777789999999999999999999999999999999999888877777777777788888888899999988888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000671 1046 VAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRV 1125 (1361)
Q Consensus 1046 ~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl 1125 (1361)
+++.++.+.+.+..++..+......+...+++.|+++|+++||+|+.++++.+++.+..++..+..+.......+.....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (585)
T TIGR01192 167 ILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLN 246 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888888888888888888888999999999999999999999999999999888877666555444444443333
Q ss_pred HHHHHHHHHHHH-HHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCC
Q 000671 1126 EALQNLTLFTAA-LFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDK 1204 (1361)
Q Consensus 1126 ~~l~~l~~~~~~-~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~ 1204 (1361)
.++..+..+++. +.++++..|.+++|.+.+++.|+..+..++..+...+.++.....+.+|+.++.+.+++.+. ..
T Consensus 247 ~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~ 323 (585)
T TIGR01192 247 RMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PA 323 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---Cc
Confidence 333333322222 22344568899999999999999999999999999999999999999999999876554321 11
Q ss_pred CCCCCC-CCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCC
Q 000671 1205 RPPSSW-PFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS 1283 (1361)
Q Consensus 1205 ~~~~~w-p~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~ 1283 (1361)
.++ .+ +.+|.|+|+||+|+|+++. ++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|++||+|+++
T Consensus 324 ~~~-~~~~~~~~i~~~~v~~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 401 (585)
T TIGR01192 324 DAP-ELPNVKGAVEFRHITFEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINT 401 (585)
T ss_pred cCC-CCCCCCCeEEEEEEEEECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhh
Confidence 111 12 2357899999999997543 59999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1284 MGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1284 i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++.+++|+++++|||||.+|+|||||||.... +.+|+|+++|++.++-.. .---|+|+..+++|.++|.||||++.
T Consensus 402 ~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~ 481 (585)
T TIGR01192 402 VTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLA 481 (585)
T ss_pred CCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999997542 578999999999875332 11226788888999999999999974
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=487.72 Aligned_cols=417 Identities=17% Similarity=0.215 Sum_probs=339.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHH
Q 000671 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1361)
Q Consensus 938 l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~ 1017 (1361)
+++++++.++..++.+++.++....+.+...+++.++++++++.|++||++.++|++++|+++|++.++......+..++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~ 118 (569)
T PRK10789 39 IGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLV 118 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444555566677778888888899999999999999999999999999999999999999999999977777777777
Q ss_pred HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHH
Q 000671 1018 ASGTELLAIIGIM-TFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096 (1361)
Q Consensus 1018 ~~~~~~i~~i~v~-~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f 1096 (1361)
..++..++.++++ ++.+|.+.++.+..+++..++.+.+.+..++..+..+...+.+.+++.|+++|+++||+|+.|+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 198 (569)
T PRK10789 119 DSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQ 198 (569)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHH
Confidence 6665555555555 478898877776666666666676766666666666777788999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYC 1175 (1361)
Q Consensus 1097 ~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~-~~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~ 1175 (1361)
.+++.+..++..+..+.......+.......+..+..+++ .+.++++..|.+++|.+..++.|+..+..|+..+...+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~ 278 (569)
T PRK10789 199 SALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFN 278 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888777766655555544443333333222222 222344568999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCc
Q 000671 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSG 1255 (1361)
Q Consensus 1176 ~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSG 1255 (1361)
+++...++.+|+.++++.++|.+. .....+ +.+|+|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||
T Consensus 279 ~~~~~~~a~~ri~~ll~~~~~~~~--~~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsG 353 (569)
T PRK10789 279 IVERGSAAYSRIRAMLAEAPVVKD--GSEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSG 353 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccC--CCCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCC
Confidence 999999999999999987655321 111111 235789999999999765556999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCC-CCCCHHHHHHHHhhCcCCC-
Q 000671 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKVSQLTPNSR- 1333 (1361)
Q Consensus 1256 KSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~-~~~sDeeI~~AL~~~~~~~- 1333 (1361)
||||+++|.|+|+|++|+|++||+|+++++.+++|+++++|||||+||+||||+||... .+++|+++++|++.++-..
T Consensus 354 KSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~ 433 (569)
T PRK10789 354 KSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDD 433 (569)
T ss_pred HHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999754 3589999999999985321
Q ss_pred --CCCcccccCCchhhhhhcccccccee
Q 000671 1334 --NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1334 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+---|+|+..+++|.++|.||||++.
T Consensus 434 i~~lp~gl~t~~~~~g~~LSgGq~qRi~ 461 (569)
T PRK10789 434 ILRLPQGYDTEVGERGVMLSGGQKQRIS 461 (569)
T ss_pred HHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 11236788889999999999999974
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=485.95 Aligned_cols=452 Identities=16% Similarity=0.172 Sum_probs=351.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000671 904 LGVLAQSGFVGLQAAATYWLAYAIQIPKI--TSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKA 981 (1361)
Q Consensus 904 l~~~~~~~~~~~~~~~~~wl~~~~~~~~~--~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~a 981 (1361)
+++++.++..++.+..++++...++.... ....++.+++++.++..+..++......+...+....+..++++++++.
T Consensus 23 ~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 102 (588)
T PRK13657 23 LLAVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQL 102 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444445555666667777666543211 1111223333333444444444444445555566666777999999999
Q ss_pred CCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 982 PMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARE 1061 (1361)
Q Consensus 982 p~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~ 1061 (1361)
|.++|++.+.|++++|+++|++.+...+...+..++..++..++.++++++.+|++.++.+.+++++..+..++.+..++
T Consensus 103 ~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~ 182 (588)
T PRK13657 103 PLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKD 182 (588)
T ss_pred CHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988777777777777777777777888899998887777777777777888888888
Q ss_pred HHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 000671 1062 LIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAAL-FL 1140 (1361)
Q Consensus 1062 l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~-~~ 1140 (1361)
..+......+...+++.|+++|+++||+|+.++++.+++.+..+...+..........+.....+++..+..+++.+ .+
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 262 (588)
T PRK13657 183 GQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGA 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999999888877776655555555554444443333333222 23
Q ss_pred hhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEE
Q 000671 1141 VLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQ 1220 (1361)
Q Consensus 1141 vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~n 1220 (1361)
..+..|.+++|.+..++.|+..+..++..+...+.++..+..+.+|+.++.+.+++.+.. ++..++. +.+|.|+|+|
T Consensus 263 ~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~~~~--~~~~~I~~~~ 339 (588)
T PRK13657 263 ALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-PGAIDLG--RVKGAVEFDD 339 (588)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-CCCCCcC--CCCCeEEEEE
Confidence 445689999999999999999999999999999999999999999999998765443211 1111111 2357899999
Q ss_pred EEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcc
Q 000671 1221 LKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEP 1300 (1361)
Q Consensus 1221 Vs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp 1300 (1361)
|+|+|+++ +++|+|+||+++|||+|||||+||||||||+++|.|+|+|++|+|+|||+|+++++.+++|++|++|||||
T Consensus 340 vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 418 (588)
T PRK13657 340 VSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDA 418 (588)
T ss_pred EEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCc
Confidence 99999643 45999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1301 TLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1301 ~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
.||+||||+||.-+. +.+|+|+|+|++.++-.. .---|+|+..++.|.++|.||||++.
T Consensus 419 ~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRia 481 (588)
T PRK13657 419 GLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLA 481 (588)
T ss_pred ccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHH
Confidence 999999999997442 578999999999986321 11225788888899999999999974
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=446.97 Aligned_cols=412 Identities=18% Similarity=0.270 Sum_probs=324.8
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHH
Q 000671 938 IGVYAGVSTA------SAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPF 1011 (1361)
Q Consensus 938 l~iy~~l~~~------~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~ 1011 (1361)
+..|..+.++ ++++.-+|+++...+...+.+.+-.++|+|+....++|+-...+|+++.-+.+..+.+. .+..
T Consensus 256 ~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~y 334 (790)
T KOG0056|consen 256 VFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEY 334 (790)
T ss_pred HHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHH
Confidence 4445555443 35667778888888888899999999999999999999999999998888877777766 4455
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhc
Q 000671 1012 SIVFVAASGTELLAIIGIMT-FVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAF 1090 (1361)
Q Consensus 1012 ~l~~~~~~~~~~i~~i~v~~-~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf 1090 (1361)
.+.++...++.+.++++..+ ..+|++.++++..+.+|.++......--.+.+|....+-..-.+.-.+++-+-.|++-|
T Consensus 335 vVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy 414 (790)
T KOG0056|consen 335 VVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYY 414 (790)
T ss_pred HHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhcc
Confidence 55555555555555544433 46889988888777777664322211112222222222222334567889999999999
Q ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCccCHHHHHHHHHHHHHHHHHHHH
Q 000671 1091 NMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVF 1169 (1361)
Q Consensus 1091 ~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~-~vl~~~g~is~g~~gl~l~ya~~l~~~l~~ 1169 (1361)
++|+...++|.+.++.+++.-++....-..+...-+.+..+..+...++ ++.+..+.++.|...++.+|.+++..|++|
T Consensus 415 ~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~ 494 (790)
T KOG0056|consen 415 NAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNF 494 (790)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHH
Confidence 9999999999999999999888777766666655444444443333333 345567889999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEE
Q 000671 1170 LSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVV 1249 (1361)
Q Consensus 1170 l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIV 1249 (1361)
+...+..+|++.+-.||+++.++.++|..+ .+..|| ---.+|.|+|+||+|.|+|+.| ||+||||+++||+.||+|
T Consensus 495 FGT~YR~iQ~nfiDmEnmfdllkee~eVvd--~P~a~p-l~~~~G~i~fsnvtF~Y~p~k~-vl~disF~v~pGktvAlV 570 (790)
T KOG0056|consen 495 FGTYYRSIQKNFIDMENMFDLLKEEPEVVD--LPGAPP-LKVTQGKIEFSNVTFAYDPGKP-VLSDISFTVQPGKTVALV 570 (790)
T ss_pred HHHHHHHHHHhhhhHHHHHHHhhcCchhhc--CCCCCC-ccccCCeEEEEEeEEecCCCCc-eeecceEEecCCcEEEEE
Confidence 999999999999999999999986666422 111122 2235799999999999999876 999999999999999999
Q ss_pred cCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhh
Q 000671 1250 GRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQL 1328 (1361)
Q Consensus 1250 GrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~ 1328 (1361)
||||+||||++++||||||.++|+|+|||+||+.+..++||++||+||||.+||++||-.||.... .++|||+.+|.+.
T Consensus 571 G~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkA 650 (790)
T KOG0056|consen 571 GPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKA 650 (790)
T ss_pred CCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997322 4899999999998
Q ss_pred C---------cCCCCCCcccccCCchhhhhhccccccceec
Q 000671 1329 T---------PNSRNSRIDIDFPTFNKFCCRIIKTKQLVTV 1360 (1361)
Q Consensus 1329 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1361)
| |++++|.. ||.|--+|.|+||+|.+
T Consensus 651 A~IHdrIl~fPegY~t~V------GERGLkLSGGEKQRVAi 685 (790)
T KOG0056|consen 651 AQIHDRILQFPEGYNTRV------GERGLKLSGGEKQRVAI 685 (790)
T ss_pred hhHHHHHhcCchhhhhhh------hhcccccCCcchhhHHH
Confidence 8 57777776 67889999999999964
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-47 Score=473.49 Aligned_cols=463 Identities=15% Similarity=0.103 Sum_probs=338.5
Q ss_pred HHHHHHHH-hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 887 KPFMDYLN-VSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLK 965 (1361)
Q Consensus 887 ~~y~~y~~-~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~ 965 (1361)
+..++|++ ..++. +++.+++.++.....+..++.++.+.+.........+..++++.++..++.++..++....+.+
T Consensus 6 ~~l~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (555)
T TIGR01194 6 GEILALLRSPFPAI--TAFSIALGLAGGLAIIALLASINNAIHEENFLGQGSLFSFGGLCLLALLFRIGADIFPAYAGMH 83 (555)
T ss_pred HHHHHHHhhccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455665 33322 2233333334444555566666666543211111122234455666677888888999999999
Q ss_pred HHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000671 966 ASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAM 1045 (1361)
Q Consensus 966 ~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~ 1045 (1361)
...++|.++++++++.|++||++.++|++++|+++|++.++..+.. +..++..++.+++.++++++.+|.+.++++..+
T Consensus 84 ~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~ 162 (555)
T TIGR01194 84 IIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAI 162 (555)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998754 666777777888888889999999988776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000671 1046 VAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVD--RFFQNYLKLVDIDASLFFHTNGVMEWLIL 1123 (1361)
Q Consensus 1046 ~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~--~f~~~~~~~~d~~~~~~~~~~~~~~wl~~ 1123 (1361)
++...+..+..+..++..+......+.+.+++.|.+.|+++||+|+.++ ...+++.+..++..+..............
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
T TIGR01194 163 IIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAEN 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555555555555556666677889999999999999999999954 45666777666665554433322222222
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCC--
Q 000671 1124 RVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIV-- 1201 (1361)
Q Consensus 1124 rl~~l~~l~~~~~~~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~-- 1201 (1361)
..+++..+...+..++. ...+.++.|.+..++.|+..+..|+..+...+.++++..+|.+|+.++++.+++++...
T Consensus 243 ~~~~~~~~~~~~~~~~~--~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~ 320 (555)
T TIGR01194 243 FGQLLFFLLIGCALFAA--AMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELEL 320 (555)
T ss_pred HHHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 22222221111111111 12368899999999999999999999999999999999999999999976432221110
Q ss_pred CC-CCC--CCCCCCcceEEEEEEEEEeCCC---CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEE
Q 000671 1202 ED-KRP--PSSWPFKGRIELRQLKIRYRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275 (1361)
Q Consensus 1202 ~~-~~~--~~~wp~~G~I~f~nVs~~Y~~~---~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~ 1275 (1361)
++ ... .+..+..++|+|+||+|+|++. .+++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.
T Consensus 321 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~ 400 (555)
T TIGR01194 321 SDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEIL 400 (555)
T ss_pred cccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 00 000 0111235789999999999643 23599999999999999999999999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCCCC-CcccccCCchhhhhhcccc
Q 000671 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSRNS-RIDIDFPTFNKFCCRIIKT 1354 (1361)
Q Consensus 1276 IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 1354 (1361)
+||+||++++.+++|+++++|||||+||++|+|+|+.| +.+|++++++++.++-.... ....++.+ ..++|.||
T Consensus 401 ~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t---~~~LSgGq 475 (555)
T TIGR01194 401 LDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGE--HASLDNAQQYLQRLEIADKVKIEDGGFST---TTALSTGQ 475 (555)
T ss_pred ECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccccc--chhHHHHHHHHHHcCCchhhcccccccCC---cccCCHHH
Confidence 99999999999999999999999999999999999865 57899999999998633211 11112222 27899999
Q ss_pred cccee
Q 000671 1355 KQLVT 1359 (1361)
Q Consensus 1355 ~~~~~ 1359 (1361)
||++.
T Consensus 476 ~qRla 480 (555)
T TIGR01194 476 QKRLA 480 (555)
T ss_pred HHHHH
Confidence 99974
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-48 Score=521.70 Aligned_cols=190 Identities=21% Similarity=0.281 Sum_probs=155.6
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCc----cCCCcEEEEcC------------eEEEEecCCcC-CCC
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI----PKISGTVNLYG------------SIAYVSQTSWI-QSG 672 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~----~~~~G~v~~~g------------~iayv~Q~~~i-~~~ 672 (1361)
+++|+|+|+++++||+++|+|||||||||||++|.|.. +|++|+|.++| .++|++|++.+ .+.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 46899999999999999999999999999999999996 46899999987 28999998755 567
Q ss_pred CHHHHhhcCCC----------CCHHHH-----HHHHHHhcchHHHhcCCCCCCccccC-CCCCCChHHHHHHHHHHHHcc
Q 000671 673 SIRDNILYGKP----------MDKARY-----DKAIKACALDKDINNFDHGDLTEIGQ-RGLNLSGGQKQRIQLARAVYN 736 (1361)
Q Consensus 673 ti~eni~~g~~----------~~~~~~-----~~~~~~~~l~~dl~~l~~gd~t~ig~-~g~~LSgGQkqRv~lARal~~ 736 (1361)
||+||+.|+.. ..++.+ +.+++..+|.+ --+|.+|+ ....|||||||||+||||++.
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH-------TRNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc-------ccCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 99999988521 222222 22344444432 23456654 457899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCc-hHHh-hcCeEEEEeCCeEEEecChHHHH
Q 000671 737 DADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQV-EFLS-EVDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 737 ~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~-~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 806 (1361)
+|++++|||||+|||+.++..+.+.+.+... .|+|+|+++||+ +.+. .+|+|++|++|++++.|+.+++.
T Consensus 227 ~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 227 GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999999877665544 489999999997 4554 58999999999999999998874
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=478.01 Aligned_cols=195 Identities=24% Similarity=0.347 Sum_probs=163.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 3689999999999999999999999999999999999999999999876 3
Q ss_pred EEEEecCCcCC-CCCHHHHhhcCCC-------C---CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHH
Q 000671 660 IAYVSQTSWIQ-SGSIRDNILYGKP-------M---DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1361)
Q Consensus 660 iayv~Q~~~i~-~~ti~eni~~g~~-------~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQ 724 (1361)
++|++|++.++ +.|++||+.++.. . +. ++..++++.+++... ...+..+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-----------LDEKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHHH
Confidence 89999998664 5699999987531 0 11 223344444444321 235677999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecCh
Q 000671 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1361)
||||+||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecch
Confidence 999999999999999999999999999999999988766554568999999999999875 899999999999876653
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-48 Score=486.22 Aligned_cols=206 Identities=20% Similarity=0.359 Sum_probs=168.8
Q ss_pred CcEEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 593 RSVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
..++++|++++|+... ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3689999999996422 24699999999999999999999999999999999999999999987643
Q ss_pred --------------eEEEEecCC--cC-CCCCHHHHhhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccc
Q 000671 659 --------------SIAYVSQTS--WI-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEI 713 (1361)
Q Consensus 659 --------------~iayv~Q~~--~i-~~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~i 713 (1361)
.||||+|+| -+ ...||+||+.++. ..+. ++..++++..++.+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 489999998 34 4579999998752 1222 344555666655310 0112
Q ss_pred cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEE
Q 000671 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVL 791 (1361)
Q Consensus 714 g~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l 791 (1361)
..+..+|||||||||+||||++.+|++|||||||++||+.+++.+.+.+.....+ |+|+|+||||++.+.. ||+|++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 3567899999999999999999999999999999999999999998765554433 8999999999999865 8999999
Q ss_pred eCCeEEEecChHHHH
Q 000671 792 EGGQITQSGNYQELL 806 (1361)
Q Consensus 792 ~~G~i~~~g~~~~l~ 806 (1361)
++|++++.|+++++.
T Consensus 243 ~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 243 YQGEAVETGSVEQIF 257 (623)
T ss_pred eCCeecccCCHHHhh
Confidence 999999999877764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=454.91 Aligned_cols=206 Identities=25% Similarity=0.396 Sum_probs=169.9
Q ss_pred cEEEEeeEEEeCCCCC-CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC----CcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI----SGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~----~G~v~~~g---------- 658 (1361)
-++++|.+.+|..... .++++|+||++.+||+++|+|.|||||||+.++|+|..++. +|+|.++|
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999876532 25899999999999999999999999999999999999987 89998876
Q ss_pred -------eEEEEecCCc-CCC--CCHHHHhh----cCCCC----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 659 -------SIAYVSQTSW-IQS--GSIRDNIL----YGKPM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 659 -------~iayv~Q~~~-i~~--~ti~eni~----~g~~~----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
.|||++|+|+ .+| .||.+-|. ..... ..++..+.++..+|.+.... ...+..|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 4999999985 233 57766664 22222 22344455555665443322 3578899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
||||||||.||+|+..+|+++|+||||+|||+.++++|.+.+.... ..|.++|+||||+..+.+ ||+|+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999998766554 358999999999999887 89999999999999
Q ss_pred ecChHHHHhc
Q 000671 799 SGNYQELLLA 808 (1361)
Q Consensus 799 ~g~~~~l~~~ 808 (1361)
.|+.+++.++
T Consensus 236 ~G~~~~i~~~ 245 (539)
T COG1123 236 TGPTEEILSN 245 (539)
T ss_pred ecCHHHHHhc
Confidence 9999998753
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=463.03 Aligned_cols=439 Identities=14% Similarity=0.104 Sum_probs=338.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC--C--Cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000671 909 QSGFVGLQAAATYWLAYAIQIP--K--ITS-GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPM 983 (1361)
Q Consensus 909 ~~~~~~~~~~~~~wl~~~~~~~--~--~~~-~~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~ 983 (1361)
.++...+.++.++.+...++.. . ... ..++.+++++.++..++.+++.++....+.+....++.++++++++.|+
T Consensus 15 ~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~ 94 (544)
T TIGR01842 15 SFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATL 94 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3344455556666666555421 1 111 1233445555566777888888999999999999999999999999998
Q ss_pred ccccccChhHHHHHHhcCHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 984 LFFDSTPVGRILTRLSSDLSILDFDIPF-SIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAREL 1062 (1361)
Q Consensus 984 ~fFd~tp~GrIlnRfs~Di~~id~~l~~-~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l 1062 (1361)
.. .|..++++++|++.+...+.. .+..++..++.++ .++++++.+|++.++++..+++.+.+..++.+..++.
T Consensus 95 ~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~ 168 (544)
T TIGR01842 95 RR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKP 168 (544)
T ss_pred cC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 43 367789999999999987766 4445555544444 3456788888887766554444444555555555555
Q ss_pred HHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhh
Q 000671 1063 IRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT-AALFLV 1141 (1361)
Q Consensus 1063 ~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~-~~~~~v 1141 (1361)
.+...+..+...+++.|+++|+++||+|+.|+++.+++.+..++..+..........+......++..+..++ .++.++
T Consensus 169 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 248 (544)
T TIGR01842 169 LKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAY 248 (544)
T ss_pred HHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677788899999999999999999999999999999888877766655544444443333333332222 222334
Q ss_pred hhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEE
Q 000671 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQL 1221 (1361)
Q Consensus 1142 l~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nV 1221 (1361)
++..|.+++|.+.+++.|+..+..|+..+...+.+++....+.+|+.++++.++|.+. ....+ +.+|.|+|+||
T Consensus 249 l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~~~~v 322 (544)
T TIGR01842 249 LAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLSVENV 322 (544)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEEEEEE
Confidence 5568999999999999999999999999999999999999999999999987665321 11111 23578999999
Q ss_pred EEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCccc
Q 000671 1222 KIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301 (1361)
Q Consensus 1222 s~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~ 1301 (1361)
+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|.+||+|+.+++.+.+|+++++|||||+
T Consensus 323 ~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~ 402 (544)
T TIGR01842 323 TIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVE 402 (544)
T ss_pred EEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcc
Confidence 99997655569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1302 LFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1302 LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+|+||+||||..++ +++|+|+++|++.++-.. .-.-|+|+..++.|.++|.||||++.
T Consensus 403 lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~ 464 (544)
T TIGR01842 403 LFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIA 464 (544)
T ss_pred cccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHH
Confidence 99999999998554 489999999999885321 11225688888999999999999974
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=434.03 Aligned_cols=418 Identities=17% Similarity=0.146 Sum_probs=351.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHH
Q 000671 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015 (1361)
Q Consensus 936 ~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~ 1015 (1361)
.+++..++..++..+..+.+.....+.+.++...+|+++++++.+.+..|-...|+|+....++.-++.++..+...+..
T Consensus 41 ~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq 120 (559)
T COG4988 41 PLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQ 120 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhccc
Q 000671 1016 VAASGTELLAIIGIMTFVTWQVLVVA---IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNM 1092 (1361)
Q Consensus 1016 ~~~~~~~~i~~i~v~~~~~~~l~lv~---ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~ 1092 (1361)
++.+.+.-+..++.+++.+|...++. .|+++++.++ ....++...+..-.+...+.+||-+.+.|+.|+|+|++
T Consensus 121 ~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil---vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~ 197 (559)
T COG4988 121 MFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL---VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGR 197 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcc
Confidence 99998888888899999999876554 4555555443 33344444455556677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcC-CccCHHHHHHHHHHHHHHHHHHHHH
Q 000671 1093 VDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFL-VLIPR-GYVAPGLVGLSLSYAFTLTGTQVFL 1170 (1361)
Q Consensus 1093 e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~~-vl~~~-g~is~g~~gl~l~ya~~l~~~l~~l 1170 (1361)
.+...++..+...+..+..+...+..---+..+|++..+.+..+++.+ ..+.. |.++....-+++..+-.+..|+..+
T Consensus 198 ~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~l 277 (559)
T COG4988 198 TEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDL 277 (559)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHH
Confidence 999999998888888887777666666666778888888776666653 33344 7888877778888899999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEc
Q 000671 1171 SRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVG 1250 (1361)
Q Consensus 1171 ~~~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVG 1250 (1361)
...|..-.++..+.|.+..+++.|.+.+.. .......|-...+|+.+|++++|+++. ++++|+||+++|||++||||
T Consensus 278 Gs~fH~~~~g~aa~d~i~~~l~~~~~~~~~--~~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG 354 (559)
T COG4988 278 GSFFHAAAAGEAAADKLFTLLESPVATPGS--GEKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVG 354 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHhcCCCCCCCC--ccccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEEC
Confidence 999999999999999999999877664421 111123343445777889999997665 69999999999999999999
Q ss_pred CCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhC
Q 000671 1251 RTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLT 1329 (1361)
Q Consensus 1251 rTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~ 1329 (1361)
+||||||||+++|.||.+|++|+|.+||+|.++++.+++|+++++|||+|++|+|||||||.-++ ..|||||++|++++
T Consensus 355 ~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a 434 (559)
T COG4988 355 ASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQA 434 (559)
T ss_pred CCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999996444 37999999999999
Q ss_pred cCCCCC--CcccccCCchhhhhhcccccccee
Q 000671 1330 PNSRNS--RIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1330 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+-..-. .-|+|+.-+|+|.++|.||+|+|.
T Consensus 435 ~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRla 466 (559)
T COG4988 435 GLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLA 466 (559)
T ss_pred cHHHhhcCCCcccchhccCCCCCCHHHHHHHH
Confidence 633222 568999999999999999999985
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=474.28 Aligned_cols=194 Identities=24% Similarity=0.378 Sum_probs=162.0
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC--CCcEEEEcC-------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~--~~G~v~~~g------------- 658 (1361)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 5899999999963 3699999999999999999999999999999999999996 899999876
Q ss_pred -eEEEEecCCcCC-CCCHHHHhhcCCC------CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 -~iayv~Q~~~i~-~~ti~eni~~g~~------~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|++.++ +.|++||+.++.. .+. ++.+++++..++... ...+..+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN-----------PATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHHHHH
Confidence 289999998665 5699999998642 122 223344444433211 23567899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
|++||||++.+|+++||||||++||+.....+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 9999999999999999999999999999999987766554568999999999999876 89999999999987653
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=425.58 Aligned_cols=410 Identities=18% Similarity=0.205 Sum_probs=335.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHH
Q 000671 943 GVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTE 1022 (1361)
Q Consensus 943 ~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~ 1022 (1361)
++++...+..|+..++.+....++-.++|.++|+++...+..-..+-..|+++||+..|++.+|...-..+...+..+..
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~ 145 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVL 145 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHH
Confidence 55678888899999999999999999999999999999999999999999999999999999999988888888877777
Q ss_pred HHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHH
Q 000671 1023 LLAIIGIMTFVTWQVLVVA-IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101 (1361)
Q Consensus 1023 ~i~~i~v~~~~~~~l~lv~-ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~ 1101 (1361)
.+++.+.+.+++|++.+.. +.++.....+...+.+.+|...+.-...++.+.++|.|-+.|....+.||+++++.+.+.
T Consensus 146 ~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~ 225 (573)
T COG4987 146 IAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225 (573)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 7777777777888775543 444444555666667777888887788899999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000671 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTLF-TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLS-RWYCYLAN 1179 (1361)
Q Consensus 1102 ~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~-~~~~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~-~~~~~le~ 1179 (1361)
+.-+...+..........|-...+.++..+.++ ..++.+.....|..+.-.+.+++.-++....++.-+. ..+.++.+
T Consensus 226 ~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq 305 (573)
T COG4987 226 ATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQ 305 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhH
Confidence 999999999999999999999888888776655 3333344344565553333333333344455555555 56688999
Q ss_pred HhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcc-eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHH
Q 000671 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKG-RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT 1258 (1361)
Q Consensus 1180 ~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G-~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKST 1258 (1361)
...|.+|+.+..+.++|.... +.. -|..| .++++||+|+|+.+.++||+|+||++++||||||+|||||||||
T Consensus 306 ~~~Sa~Rl~~i~~q~~e~~~~--~~~----~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 306 VIASARRLNDILDQKPEVTFP--DEQ----TATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred HHHHHHHHhhhccCCcccCCC--ccc----cCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHH
Confidence 999999999988777765432 111 12222 89999999999888888999999999999999999999999999
Q ss_pred HHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCC-CCCCHHHHHHHHhhCcCCC---C
Q 000671 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKVSQLTPNSR---N 1334 (1361)
Q Consensus 1259 L~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~-~~~sDeeI~~AL~~~~~~~---~ 1334 (1361)
++++|.|-|+|++|+|+.+|+|++.++-+++|+.|++++|.+.||+||+|+||.-- .+.||||+|+||++++-+. +
T Consensus 380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~ 459 (573)
T COG4987 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLES 459 (573)
T ss_pred HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999522 2489999999999985222 2
Q ss_pred CCcccccCCchhhhhhccccccce
Q 000671 1335 SRIDIDFPTFNKFCCRIIKTKQLV 1358 (1361)
Q Consensus 1335 ~~~~~~~~~~~~~~~~~~~~~~~~ 1358 (1361)
.-=|+++.-+++|-.+|.||||+.
T Consensus 460 ~p~gl~t~lge~G~~LSGGE~rRL 483 (573)
T COG4987 460 APDGLNTWLGEGGRRLSGGERRRL 483 (573)
T ss_pred ChhhhhchhccCCCcCCchHHHHH
Confidence 222556666778888888999975
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-47 Score=471.33 Aligned_cols=192 Identities=22% Similarity=0.401 Sum_probs=158.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC--CCcEEEEcC--------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG-------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~--~~G~v~~~g-------------- 658 (1361)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 688999999963 3699999999999999999999999999999999999987 799999876
Q ss_pred eEEEEecCCcCC-CCCHHHHhhcCCCC-------CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 SIAYVSQTSWIQ-SGSIRDNILYGKPM-------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ~iayv~Q~~~i~-~~ti~eni~~g~~~-------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|++.++ +.|++||+.++... +. ++.+++++.+++.... ...+..+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN----------VTRPVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc----------ccCchhhCCHHHHH
Confidence 389999998664 56999999886421 11 1233444444432111 01346789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEe
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1361)
|++||||++.+|+++||||||++||+...+.+.+.+.+...+|+|+|++||+++++.. ||+|++|++|+++..
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 9999999999999999999999999999999988665554568999999999999876 899999999998754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=476.05 Aligned_cols=204 Identities=20% Similarity=0.363 Sum_probs=165.6
Q ss_pred cEEEEeeEEEeCCC-CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000671 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g--------- 658 (1361)
-++++|++++|+.. ...++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999642 124699999999999999999999999999999999999986 799998765
Q ss_pred --------eEEEEecCCc--C-CCCCHHHHhhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCC
Q 000671 659 --------SIAYVSQTSW--I-QSGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1361)
Q Consensus 659 --------~iayv~Q~~~--i-~~~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1361)
.+||++|+|. + ...|++||+.++. ..+ .++.+++++.+++.+... ....+..+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 3899999984 3 3469999986421 122 234556666666642110 11256789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEE
Q 000671 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1361)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1361)
|||||||||+||||++.+|+++||||||++||+...+.+.+.+.+...+ |+|+|+|||+++.+.. ||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999998766554443 8999999999999875 8999999999999
Q ss_pred EecChHHH
Q 000671 798 QSGNYQEL 805 (1361)
Q Consensus 798 ~~g~~~~l 805 (1361)
+.|+++++
T Consensus 237 ~~g~~~~~ 244 (529)
T PRK15134 237 EQNRAATL 244 (529)
T ss_pred EeCCHHHH
Confidence 88876554
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-47 Score=470.52 Aligned_cols=193 Identities=21% Similarity=0.348 Sum_probs=161.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4889999999963 3689999999999999999999999999999999999999999999876 3
Q ss_pred EEEEecCCcCC-CCCHHHHhhcCCC-------CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 660 IAYVSQTSWIQ-SGSIRDNILYGKP-------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 660 iayv~Q~~~i~-~~ti~eni~~g~~-------~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
++|++|++.++ +.|++||+.++.. .+. ++..++++.+++... ...+..+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-----------SDKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-----------ccCchhhCCHHHHHH
Confidence 89999997654 5799999998642 122 223344444444321 125667899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++|||++.+.. ||+|++|++|++++.|
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999987665554568899999999999876 8999999999998654
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=465.26 Aligned_cols=198 Identities=24% Similarity=0.417 Sum_probs=169.2
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++| .
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5899999999974 3589999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCCcCC-CCCHHHHhhcCCCCC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 660 IAYVSQTSWIQ-SGSIRDNILYGKPMD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 660 iayv~Q~~~i~-~~ti~eni~~g~~~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+||++|++.++ +.|++||+.++.... +++..++++..++.... ..+..+||||||||++||||++
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL-----------DSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc-----------cCChhhCCHHHHHHHHHHHHHH
Confidence 89999998765 569999999875322 23455566666654322 2566789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
.+|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999999999999999999999988766554568999999999999865 899999999999988776553
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=465.55 Aligned_cols=197 Identities=23% Similarity=0.326 Sum_probs=167.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
-++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3789999999964 3589999999999999999999999999999999999999999998765 27
Q ss_pred EEEecCCcC---------CCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 661 AYVSQTSWI---------QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 661 ayv~Q~~~i---------~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|++|++.. +..|++||+.++.. ++++.+++++..++.+..+ .+..+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLD-----------RRFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhhh-----------CCcccCCHHHHHHHHHH
Confidence 999998642 14689999876532 3456677788777754333 46678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
||++.+|+++||||||++||+...+.+.+.+.+...+|+|+|++||+++.+.. ||+|++|++|+++..|+++++
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999988776555568999999999999876 899999999999988765553
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-44 Score=478.43 Aligned_cols=202 Identities=24% Similarity=0.354 Sum_probs=174.3
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eE
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~i 660 (1361)
..|+++|+++.|+++ ++++++|+||++++||+++|+|+||||||||+++|.|+.+|++|+|.++| .+
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 468999999999632 25699999999999999999999999999999999999999999999987 38
Q ss_pred EEEecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 661 AYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 661 ayv~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
|||||++.++ ..|++|||.|+.. .. +++.++.++.++|.+.. .++..+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~-----------~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKR-----------NEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 9999998765 5699999987421 22 23456667776665433 2567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
|++.+|+++||||||||||+..++.+++.+.+. .+|+|+|++||+++.+.. ||||++|++|+++..|+.+++.+
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l-~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999876554 568999999999999876 89999999999999999999864
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=463.60 Aligned_cols=197 Identities=20% Similarity=0.368 Sum_probs=161.7
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCC-C
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ-S 671 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~-~ 671 (1361)
|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| +|+|++|++.++ +
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 689999999963 3699999999999999999999999999999999999999999999976 699999997654 5
Q ss_pred CCHHHHhhcCCC-C--------------------------------------CHHHHHHHHHHhcchHHHhcCCCCCCcc
Q 000671 672 GSIRDNILYGKP-M--------------------------------------DKARYDKAIKACALDKDINNFDHGDLTE 712 (1361)
Q Consensus 672 ~ti~eni~~g~~-~--------------------------------------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ 712 (1361)
.|++||+.++.. . .+++..++++.+++....
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---------- 148 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ---------- 148 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH----------
Confidence 699999987531 0 001222233333332111
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEE
Q 000671 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVL 791 (1361)
Q Consensus 713 ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l 791 (1361)
......+||||||||++||||++.+|+++||||||++||+...+.+.+.+. ..++|+|+|||+++.+.. ||+|++|
T Consensus 149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~~~d~i~~l 225 (530)
T PRK15064 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN---ERNSTMIIISHDRHFLNSVCTHMADL 225 (530)
T ss_pred hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH---hCCCeEEEEeCCHHHHHhhcceEEEE
Confidence 123567899999999999999999999999999999999999999877543 247899999999999876 8999999
Q ss_pred eCCeEE-EecChHHHHh
Q 000671 792 EGGQIT-QSGNYQELLL 807 (1361)
Q Consensus 792 ~~G~i~-~~g~~~~l~~ 807 (1361)
++|+++ +.|+++++++
T Consensus 226 ~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 226 DYGELRVYPGNYDEYMT 242 (530)
T ss_pred eCCEEEEecCCHHHHHH
Confidence 999994 7898888753
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=468.00 Aligned_cols=193 Identities=26% Similarity=0.401 Sum_probs=160.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCc--cCCCcEEEEc---------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLY--------------- 657 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~--~~~~G~v~~~--------------- 657 (1361)
++++|++++|+. .++|+|+||++.+||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 468999999963 36999999999999999999999999999999999997 7999999875
Q ss_pred --------C-----------------------eEEEEecC-CcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhc
Q 000671 658 --------G-----------------------SIAYVSQT-SWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACA 697 (1361)
Q Consensus 658 --------g-----------------------~iayv~Q~-~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~ 697 (1361)
| .++|++|+ +.++ ..|++||+.++.. .+ .++..++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1 28999997 4544 5699999987421 22 234566677777
Q ss_pred chHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEc
Q 000671 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVT 776 (1361)
Q Consensus 698 l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvt 776 (1361)
+...++ .+..+|||||||||+||||++.+|+++||||||++||+.+.+.+.+.+.+... .|+|+|+||
T Consensus 158 l~~~~~-----------~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRIT-----------HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 754332 45678999999999999999999999999999999999999999876655434 489999999
Q ss_pred cCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 777 HQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 777 H~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
||++.+.. ||+|++|++|++++.|+
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~ 252 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGT 252 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecC
Confidence 99999875 89999999999876543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=462.06 Aligned_cols=191 Identities=23% Similarity=0.354 Sum_probs=161.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 5889999999964 3599999999999999999999999999999999999999999998875 3
Q ss_pred EEEEecCCcCCC-CCHHHHhhcCCC------CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 660 IAYVSQTSWIQS-GSIRDNILYGKP------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 660 iayv~Q~~~i~~-~ti~eni~~g~~------~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
|+|++|++.++. .|++||+.++.. .+. ++..++++.+++... ...+..+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHHHHHHH
Confidence 899999987654 699999998631 121 234445555544321 1256779999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
+||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|+++.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999988766554568999999999999866 89999999999874
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=460.74 Aligned_cols=206 Identities=27% Similarity=0.366 Sum_probs=162.1
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCCC
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~~ 671 (1361)
-++++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .|||++|+|.+++
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 5899999999962 24699999999999999999999999999999999999999999999864 6999999998764
Q ss_pred -CCHHHHhhcCCC-C----------------CHH-------HHHHH---HHHh-------cchHHHhcCCCCCCccccCC
Q 000671 672 -GSIRDNILYGKP-M----------------DKA-------RYDKA---IKAC-------ALDKDINNFDHGDLTEIGQR 716 (1361)
Q Consensus 672 -~ti~eni~~g~~-~----------------~~~-------~~~~~---~~~~-------~l~~dl~~l~~gd~t~ig~~ 716 (1361)
.|++||+.++.. + ..+ .+.++ ++.+ .+..-++.+.-. ....+
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~~ 160 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP---PWDAK 160 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC---cccCc
Confidence 599999987531 0 000 00000 0000 011112222211 12456
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCe
Q 000671 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1361)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1361)
..+|||||||||+||||++.+|+++||||||++||+...+++.+.+. .. +.|+|+|||+++++.. ||+|++|++|+
T Consensus 161 ~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~-~~--~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLH-DY--PGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHH-hC--CCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 78999999999999999999999999999999999999999876543 32 3599999999999876 79999999999
Q ss_pred EE-EecChHHHHh
Q 000671 796 IT-QSGNYQELLL 807 (1361)
Q Consensus 796 i~-~~g~~~~l~~ 807 (1361)
++ +.|+++++.+
T Consensus 238 i~~~~g~~~~~~~ 250 (556)
T PRK11819 238 GIPWEGNYSSWLE 250 (556)
T ss_pred EEEecCCHHHHHH
Confidence 86 7888887653
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-44 Score=448.53 Aligned_cols=397 Identities=14% Similarity=0.103 Sum_probs=300.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHH
Q 000671 946 TASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLA 1025 (1361)
Q Consensus 946 ~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~ 1025 (1361)
++..++.+++.++....+.+...+++.++++++++.|++||+++++|++++|+++|++.+...+. .+..++..++.+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~ 137 (547)
T PRK10522 59 LLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLG 137 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 33345667788888889999999999999999999999999999999999999999999987654 46667778888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccH---HHHHHHHHH
Q 000671 1026 IIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMV---DRFFQNYLK 1102 (1361)
Q Consensus 1026 ~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e---~~f~~~~~~ 1102 (1361)
.++++++++|.++++++..+++..++..++.+..++..+..++..+...+++.|.++|+.+|+ ++.+ +.+.+++.+
T Consensus 138 ~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~ 216 (547)
T PRK10522 138 SAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEP 216 (547)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhH
Confidence 888999999999888777777766666666666666666666778889999999999999995 5543 456777777
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000671 1103 LVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLI-PRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYI 1181 (1361)
Q Consensus 1103 ~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~~vl~-~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~ 1181 (1361)
..++..+.................++.. +..+++.+.. ..+..+.+.++++..+.+.+..|+..+...+.+++...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 217 DAQEYRHHIIRADTFHLSAVNWSNIMML---GAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666555443322221111111111111 1111111111 01122334444455555567789999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHH
Q 000671 1182 ISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLIS 1261 (1361)
Q Consensus 1182 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~ 1261 (1361)
.+.+|+.++.+.++|++. ++..+. |..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||++
T Consensus 294 ~a~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ 367 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEF--PRPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAM 367 (547)
T ss_pred HHHHHHHHHhcccccccc--cccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 999999998765543211 111111 223689999999999743 45999999999999999999999999999999
Q ss_pred HHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCCCCCccccc
Q 000671 1262 ALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSRNSRIDIDF 1341 (1361)
Q Consensus 1262 ~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~~~~~~~~~ 1341 (1361)
+|.|+|+|++|+|++||+|+++++.+++|+++++|||||++|+||+++| . ...+|++++++++.++.+.....+.+.
T Consensus 368 ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n-~--~~~~~~~~~~~~~~~~l~~~~~~~~~~ 444 (547)
T PRK10522 368 LLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE-G--KPANPALVEKWLERLKMAHKLELEDGR 444 (547)
T ss_pred HHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc-c--CchHHHHHHHHHHHcCCchhhhccccC
Confidence 9999999999999999999999999999999999999999999999999 3 357899999999998654433322111
Q ss_pred CCchhhhhhcccccccee
Q 000671 1342 PTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1342 ~~~~~~~~~~~~~~~~~~ 1359 (1361)
..|.++|.||||++.
T Consensus 445 ---~~G~~LSgGq~qRl~ 459 (547)
T PRK10522 445 ---ISNLKLSKGQKKRLA 459 (547)
T ss_pred ---CCCCCCCHHHHHHHH
Confidence 248999999999974
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-46 Score=458.14 Aligned_cols=190 Identities=26% Similarity=0.342 Sum_probs=157.9
Q ss_pred EeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eEEEE
Q 000671 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SIAYV 663 (1361)
Q Consensus 598 ~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~iayv 663 (1361)
+|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 2 ~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 2 SNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 678888863 3699999999999999999999999999999999999999999999876 38999
Q ss_pred ecCCcC-CCCCHHHHhhcCCC------CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 664 SQTSWI-QSGSIRDNILYGKP------MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 664 ~Q~~~i-~~~ti~eni~~g~~------~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
+|++.+ .+.|++||+.++.. .+.+ +.+++++.+++.. ....+..+|||||||||+|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-----------DPRAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHHHHHHHH
Confidence 999865 46799999987631 1221 2233344333321 123567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
|++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 217 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQP 217 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999988766554568999999999999865 89999999999987654
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=457.26 Aligned_cols=206 Identities=26% Similarity=0.351 Sum_probs=165.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCC-
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ- 670 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~- 670 (1361)
-++++|++++|+.+ +++|+|+||+|++|++++|+|+||||||||+++|+|+.+|++|+|.+++ .|||++|+|+++
T Consensus 4 ~i~~~nls~~~~~~--~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPPK--KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCCC--CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 48899999999622 3699999999999999999999999999999999999999999999874 699999999875
Q ss_pred CCCHHHHhhcCCCC-------------------C--------HHHHHHHHHHhcch-------HHHhcCCCCCCccccCC
Q 000671 671 SGSIRDNILYGKPM-------------------D--------KARYDKAIKACALD-------KDINNFDHGDLTEIGQR 716 (1361)
Q Consensus 671 ~~ti~eni~~g~~~-------------------~--------~~~~~~~~~~~~l~-------~dl~~l~~gd~t~ig~~ 716 (1361)
+.|++|||.++... + .+++.++++.++.. .-++.+... ....+
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP---PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC---cccCc
Confidence 56999999875310 1 01233344444432 112222211 12456
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCe
Q 000671 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1361)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1361)
..+||||||||++||||++.+|+++||||||++||+.+.+++.+.+.. . ++|+|+|||+++++.. ||++++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~-~--~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE-Y--PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 789999999999999999999999999999999999999998875433 2 3599999999999876 79999999999
Q ss_pred EE-EecChHHHHh
Q 000671 796 IT-QSGNYQELLL 807 (1361)
Q Consensus 796 i~-~~g~~~~l~~ 807 (1361)
++ ..|+++++.+
T Consensus 236 i~~~~g~~~~~~~ 248 (552)
T TIGR03719 236 GIPWEGNYSSWLE 248 (552)
T ss_pred EEEecCCHHHHHH
Confidence 76 7788887753
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=413.42 Aligned_cols=416 Identities=20% Similarity=0.268 Sum_probs=315.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHH
Q 000671 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015 (1361)
Q Consensus 936 ~~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~ 1015 (1361)
..+..|.+..+++.+|..++.++++.+..++-++...+.|++.+.+.++||.+..+|.+.+++.+-...|...+...+..
T Consensus 75 ~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~ 154 (591)
T KOG0057|consen 75 ALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFN 154 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHH
Confidence 45667888889999999999999999999999999999999999999999999999999888888888888777777777
Q ss_pred HHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccchHHHHHHHHhcchHHHHhcccH
Q 000671 1016 VAASGTELLAIIGIMTF-VTWQVLVVAIFAMVAVRFVQRYYIATARE-LIRINGTTKAPVMNYTAETSQGVVTIRAFNMV 1093 (1361)
Q Consensus 1016 ~~~~~~~~i~~i~v~~~-~~~~l~lv~ip~~~~~~~~~~~y~~~sr~-l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e 1093 (1361)
++..++.+....+.+.+ ..+.+.++.+..+..|..+ ..+...-|. .++....+.....+..-|++.+-.+||+||.|
T Consensus 155 i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~-Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE 233 (591)
T KOG0057|consen 155 IIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAF-TIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNE 233 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhee-EEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccH
Confidence 76666665555444433 3445544444444333221 111111222 22333445555677889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCccCHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 1094 DRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFL-VLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSR 1172 (1361)
Q Consensus 1094 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~~-vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~ 1172 (1361)
++..++|+..+.+..+...........+.+.-..+.++....+..++ --+..+.++.|.+.+..+...++..+++.+..
T Consensus 234 ~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~ 313 (591)
T KOG0057|consen 234 EYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGS 313 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHH
Confidence 99999999999888777666555444444433333322222222211 11245688999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCC
Q 000671 1173 WYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRT 1252 (1361)
Q Consensus 1173 ~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrT 1252 (1361)
.+.++-+++.-.+-.+...+.... ..+...|.. +..|.|+|+||+|.|.|+. +||||+||+|++||||||||++
T Consensus 314 vyr~~~q~l~Dm~~~~~l~~~~~~---i~~~~~~i~--~~~~~I~F~dV~f~y~~k~-~iL~gvsf~I~kGekVaIvG~n 387 (591)
T KOG0057|consen 314 VYRELRQALTDMRTLFILLEVDED---IQEAALPIE--LFGGSIEFDDVHFSYGPKR-KVLKGVSFTIPKGEKVAIVGSN 387 (591)
T ss_pred HHHHHHHHHHhHHHHHhhhhhhhh---hhhccCCcc--cCCCcEEEEeeEEEeCCCC-ceecceeEEecCCCEEEEECCC
Confidence 999998888777666543321111 111111221 3457899999999998765 4999999999999999999999
Q ss_pred CCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcC
Q 000671 1253 GSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPN 1331 (1361)
Q Consensus 1253 GSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~ 1331 (1361)
||||||++++|+||+| .+|+|+|||+||++++++.||+.||+||||..||++||-+||...+ ..+|||+.+++|+++-
T Consensus 388 GsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~ 466 (591)
T KOG0057|consen 388 GSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGL 466 (591)
T ss_pred CCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCc
Confidence 9999999999999999 9999999999999999999999999999999999999999997443 4899999999999841
Q ss_pred -CCCCCc--ccccCCchhhhhhcccccccee
Q 000671 1332 -SRNSRI--DIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1332 -~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
..-.+. |-++.-+|-||-+|.||||+|.
T Consensus 467 hd~i~~l~~GY~T~VGerG~~LSGGekQrvs 497 (591)
T KOG0057|consen 467 HDVISRLPDGYQTLVGERGLMLSGGEKQRVS 497 (591)
T ss_pred HHHHHhccccchhhHhhcccccccchHHHHH
Confidence 111122 3345568999999999999985
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=426.48 Aligned_cols=263 Identities=25% Similarity=0.361 Sum_probs=222.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhhccccCCCCcEEEEeeEEEeCCC
Q 000671 528 APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPE 607 (1361)
Q Consensus 528 ~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~ 607 (1361)
++++|+.+|+++++|+.+..++..+|..... .+|++.|+..+|.+...+.. ..+.++.|+++|++++|+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~~ 93 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMNR 93 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecCC
Confidence 6799999999999999999999988876543 56999999877754321111 12344689999999999753
Q ss_pred CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------------eEEEEecCC
Q 000671 608 LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------------SIAYVSQTS 667 (1361)
Q Consensus 608 ~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g---------------~iayv~Q~~ 667 (1361)
..++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++| .++|+||+|
T Consensus 94 -~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 94 -TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred -CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 3569999999999999999999999999999999999996 5799987654 599999999
Q ss_pred cCCCCCHHHHhhcCCCC---C-HH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCC
Q 000671 668 WIQSGSIRDNILYGKPM---D-KA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1361)
Q Consensus 668 ~i~~~ti~eni~~g~~~---~-~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1361)
|++++|++|||.|+..+ + ++ .+.++++.|++..+++ +.+++++.+||||||||++||||++++|+
T Consensus 173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqkqRl~LARAl~~~p~ 245 (329)
T PRK14257 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEPE 245 (329)
T ss_pred ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999986432 1 22 3677888888866553 56789999999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|+||||||+|||+++.+++. +++....+++|+|++||+++++.. ||+|++|++|+|++.|+++++...
T Consensus 246 IlLLDEPts~LD~~~~~~i~-~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 246 VLLMDEPTSALDPIATAKIE-ELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred EEEEeCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999965 455666668999999999999987 999999999999999999998754
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=442.56 Aligned_cols=196 Identities=23% Similarity=0.355 Sum_probs=155.2
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCCCC
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~~~ 672 (1361)
|.++|++++|+. .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++| .++|++|++.....
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~ 78 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQ 78 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 689999999964 3699999999999999999999999999999999999999999999987 58999997544445
Q ss_pred CHHHHhhcCCC-C---------------------------------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCC
Q 000671 673 SIRDNILYGKP-M---------------------------------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1361)
Q Consensus 673 ti~eni~~g~~-~---------------------------------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~ 718 (1361)
|+.+++.-+.. + .+.+..++++.+++.. .....+..
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~ 148 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN----------EQLERPVS 148 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc----------hhhcCchh
Confidence 66665542110 0 0112222222222211 01235678
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE
Q 000671 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1361)
Q Consensus 719 ~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1361)
+|||||||||+||||++.+||++||||||++||+.+..++.+.+.. . +.|+|+||||++++.. ||+|++|++|++.
T Consensus 149 ~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~-~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~ 225 (638)
T PRK10636 149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS-Y--QGTLILISHDRDFLDPIVDKIIHIEQQSLF 225 (638)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEE
Confidence 8999999999999999999999999999999999999998765433 2 5699999999999976 8999999999996
Q ss_pred -EecChHHHH
Q 000671 798 -QSGNYQELL 806 (1361)
Q Consensus 798 -~~g~~~~l~ 806 (1361)
+.|+|++..
T Consensus 226 ~~~g~~~~~~ 235 (638)
T PRK10636 226 EYTGNYSSFE 235 (638)
T ss_pred EecCCHHHHH
Confidence 578887765
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=374.80 Aligned_cols=202 Identities=26% Similarity=0.424 Sum_probs=178.8
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
-|+++|++.+|.. ..+|+|||++|++||.++|+|||||||||||++|.|+.+|++|+|.++| +
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4889999999985 3599999999999999999999999999999999999999999999998 3
Q ss_pred EEEEecCCcCC-CCCHHHHhhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 660 IAYVSQTSWIQ-SGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 660 iayv~Q~~~i~-~~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
+|+|+|+..+| ..||.|||..+. ..+ +++..+.++..+|.+..+. .+..|||||||||+|
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~-----------yP~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADA-----------YPAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhh-----------CccccCcHHHHHHHH
Confidence 78999998876 569999999862 222 3445567777888776664 456899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
||||.-+|+++|+|||||||||+...++.+.......+|.|.|+|||++.+.++ ||||+.|++|+|+++|+++++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999987766667789999999999999988 7999999999999999999998654
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=439.26 Aligned_cols=204 Identities=24% Similarity=0.370 Sum_probs=155.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe--EEEEecCCcC-C
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQTSWI-Q 670 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~--iayv~Q~~~i-~ 670 (1361)
.++++|++++|+. .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|. ++|++|.+.. .
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~ 79 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV 79 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC
Confidence 3789999999964 36999999999999999999999999999999999999999999999874 7999998643 3
Q ss_pred CCCHHHHhhcCCCC-------------------CHH---HHHHH---HHH-------hcchHHHhcCCCCCCccccCCCC
Q 000671 671 SGSIRDNILYGKPM-------------------DKA---RYDKA---IKA-------CALDKDINNFDHGDLTEIGQRGL 718 (1361)
Q Consensus 671 ~~ti~eni~~g~~~-------------------~~~---~~~~~---~~~-------~~l~~dl~~l~~gd~t~ig~~g~ 718 (1361)
.+++.+++..+... ..+ .+..+ ++. .....-++.+... ...+..
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~----~~~~~~ 155 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD----PDAALS 155 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC----CCCchh
Confidence 46787776432100 000 00000 000 0011112222111 135678
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE
Q 000671 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1361)
Q Consensus 719 ~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1361)
+|||||||||+||||++.+|+++||||||++||+.+.+++.+.+.. . +.|+|+||||.+++.. ||+|++|++|+++
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~-~--~~tvlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKT-F--QGSIIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHh-C--CCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999998765543 2 3599999999999976 8999999999997
Q ss_pred -EecChHHHHh
Q 000671 798 -QSGNYQELLL 807 (1361)
Q Consensus 798 -~~g~~~~l~~ 807 (1361)
+.|+|+++..
T Consensus 233 ~~~g~~~~~~~ 243 (635)
T PRK11147 233 SYPGNYDQYLL 243 (635)
T ss_pred EecCCHHHHHH
Confidence 5688877653
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=390.25 Aligned_cols=401 Identities=16% Similarity=0.217 Sum_probs=326.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 000671 956 SFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMT-FVT 1034 (1361)
Q Consensus 956 ~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~-~~~ 1034 (1361)
..++...+..+.+.+--+.|.|++.+.+.|+-+..+|.+..-...-...|+..+-+.+...+..++.+...++++. ..+
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 3455666777888888889999999999999887777554444444444455555666666666666666555554 468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHH
Q 000671 1035 WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHT 1114 (1361)
Q Consensus 1035 ~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~ 1114 (1361)
|+++++.+..+++|.++.......--..+|...++.+..++...+++-+-.|++.||.|+.+..+|.+.++.+.++....
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99988888888777776544444444566777777888889999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcC
Q 000671 1115 NGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI 1193 (1361)
Q Consensus 1115 ~~~~~wl~~rl~~l~~l~~~~~~~~-~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~~ 1193 (1361)
...-.||++.-..+.+......... +.-+..|.++.|.+.....|..+++.|++.+...+.++.++....|+.++.++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 8888898877666554443333332 223457899999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCC-CcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 000671 1194 PPEPPAIVEDKRPPSSWP-FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272 (1361)
Q Consensus 1194 ~~E~~~~~~~~~~~~~wp-~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G 1272 (1361)
+.|.. +....|+-|| ..|.|.|+||+|.|.|..| +|+|+||++++|+||||||++|+||||+.++|+||||+++|
T Consensus 243 ~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r~-iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 243 EAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred chhhc---cCCCCccccccccceEEEEEEEeeccccch-hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 77643 2333455675 4689999999999998875 99999999999999999999999999999999999999999
Q ss_pred EEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCcccccCCchhhh
Q 000671 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFC 1348 (1361)
Q Consensus 1273 ~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~ 1348 (1361)
+|.|||.||+++..+.||+.||+||||.+||+.||..|+...+ ..||||+++|++.++-.- .---|.|+.-+|-|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 9999999999999999999999999999999999999997443 489999999999984222 122256777788999
Q ss_pred hhccccccceec
Q 000671 1349 CRIIKTKQLVTV 1360 (1361)
Q Consensus 1349 ~~~~~~~~~~~~ 1360 (1361)
-+|.|+||+|.+
T Consensus 399 klSggekqrvai 410 (497)
T COG5265 399 KLSGGEKQRVAI 410 (497)
T ss_pred eccCchHHHHHH
Confidence 999999999864
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=453.15 Aligned_cols=197 Identities=23% Similarity=0.330 Sum_probs=156.4
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC---CcEEEEcC----------eEEEEecCCcC-CCCCHH
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG----------SIAYVSQTSWI-QSGSIR 675 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~---~G~v~~~g----------~iayv~Q~~~i-~~~ti~ 675 (1361)
..+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+ .+.||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 45899999999999999999999999999999999999998 99999987 38999999754 567999
Q ss_pred HHhhcCCC-------CC-------HH---------HHHHHHHHhc---------chHHHhc--CCCCCCccccCC-CCCC
Q 000671 676 DNILYGKP-------MD-------KA---------RYDKAIKACA---------LDKDINN--FDHGDLTEIGQR-GLNL 720 (1361)
Q Consensus 676 eni~~g~~-------~~-------~~---------~~~~~~~~~~---------l~~dl~~--l~~gd~t~ig~~-g~~L 720 (1361)
||+.|+.. ++ ++ +++..++++. .+.-++. +.+-.+|.+|++ ...|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 99988421 10 01 1111111111 1112233 333346777654 4789
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCch-H-HhhcCeEEEEeCCeEE
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVE-F-LSEVDRILVLEGGQIT 797 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~-~-l~~~d~i~~l~~G~i~ 797 (1361)
||||||||+|||+++.+|++++|||||+|||+.++.++.+.+.+... .|+|+|+++|++. . ...+|+|++|++|+++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence 99999999999999999999999999999999999999876655443 5899999999973 4 4558999999999999
Q ss_pred EecChHHHH
Q 000671 798 QSGNYQELL 806 (1361)
Q Consensus 798 ~~g~~~~l~ 806 (1361)
+.|+.+++.
T Consensus 418 y~G~~~~~~ 426 (1470)
T PLN03140 418 YQGPRDHIL 426 (1470)
T ss_pred EeCCHHHHH
Confidence 999999876
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=376.57 Aligned_cols=206 Identities=23% Similarity=0.430 Sum_probs=166.0
Q ss_pred CcEEEEeeEEEeCCC-CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC--------
Q 000671 593 RSVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g-------- 658 (1361)
.-+.++|.+.++... ....++++|||++.+||.+|+||.+|||||-..++++|+++. -+|+|.++|
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 357888888777532 345789999999999999999999999999999999999975 478998876
Q ss_pred ---------eEEEEecCCcC-CC--CCHHHHh----hcCCCCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCC
Q 000671 659 ---------SIAYVSQTSWI-QS--GSIRDNI----LYGKPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1361)
Q Consensus 659 ---------~iayv~Q~~~i-~~--~ti~eni----~~g~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~ 718 (1361)
+|++++|+|-- .| .||..-| ...+... +++..+.++..++.+--. .+...++
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPH 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPH 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCc
Confidence 59999999953 23 3665444 3433332 345566666666643222 2346778
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeE
Q 000671 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1361)
Q Consensus 719 ~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1361)
+|||||||||.||.||..+||++|-||||.|||..++.+|.+.+..... .|-.++++|||+..+++ ||||+||.+|++
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEE
Confidence 9999999999999999999999999999999999999999876654433 48899999999999987 799999999999
Q ss_pred EEecChHHHH
Q 000671 797 TQSGNYQELL 806 (1361)
Q Consensus 797 ~~~g~~~~l~ 806 (1361)
+|.|+.+++.
T Consensus 237 vE~~~t~~lF 246 (534)
T COG4172 237 VETGTTETLF 246 (534)
T ss_pred eecCcHHHHh
Confidence 9998877665
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=423.84 Aligned_cols=204 Identities=23% Similarity=0.309 Sum_probs=147.8
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcCCCC
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i~~~ 672 (1361)
..|.++|++++|+. .++|+|+||+|++|++++|+|+|||||||||++|+|+.. .| +--+|+|+|++|++.-.+.
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~--~g-~p~~g~I~~~~Q~~~g~~~ 249 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI--DG-IPKNCQILHVEQEVVGDDT 249 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CC-CCCCCEEEEEeccCCCCCC
Confidence 46999999999964 359999999999999999999999999999999999741 13 2224578889987543344
Q ss_pred CHHHHhhcC-------------------------------------CCCC--HHHHHHHHHHhcch----------HHHh
Q 000671 673 SIRDNILYG-------------------------------------KPMD--KARYDKAIKACALD----------KDIN 703 (1361)
Q Consensus 673 ti~eni~~g-------------------------------------~~~~--~~~~~~~~~~~~l~----------~dl~ 703 (1361)
|+.|.++-. .+.+ .+++.++.+..++. .-+.
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~ 329 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA 329 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 554332110 0000 02233333322221 1111
Q ss_pred cCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHh
Q 000671 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783 (1361)
Q Consensus 704 ~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 783 (1361)
.+...+ .....+..+||||||||++||||++.+|+++||||||++||+....++.+.+.. . ++|+|+||||++++.
T Consensus 330 ~lgl~~-~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~-~--~~tviivsHd~~~l~ 405 (718)
T PLN03073 330 GLSFTP-EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK-W--PKTFIVVSHAREFLN 405 (718)
T ss_pred HCCCCh-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH-c--CCEEEEEECCHHHHH
Confidence 121110 012245678999999999999999999999999999999999999998765533 2 679999999999998
Q ss_pred h-cCeEEEEeCCeEE-EecChHHHH
Q 000671 784 E-VDRILVLEGGQIT-QSGNYQELL 806 (1361)
Q Consensus 784 ~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1361)
. ||+|++|++|++. +.|+++++.
T Consensus 406 ~~~d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 406 TVVTDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred HhCCEEEEEECCEEEEeCCCHHHHH
Confidence 7 8999999999996 688877754
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=404.12 Aligned_cols=206 Identities=28% Similarity=0.420 Sum_probs=165.0
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCC-
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ- 670 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~- 670 (1361)
.|.++|++++|+. +++|+|+|+++.+|++++|||+|||||||||++|.|+..|++|+|...+ ++||++|++...
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 4789999999953 5799999999999999999999999999999999999999999999987 799999998776
Q ss_pred CCCHHHHhhcCCCCC---HHHHHHHHH------------------H-------hcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 671 SGSIRDNILYGKPMD---KARYDKAIK------------------A-------CALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 671 ~~ti~eni~~g~~~~---~~~~~~~~~------------------~-------~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
..||+|.+.-+...- ..+++.+.. . ......+..+...+. ..+..+|||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~---~~~~~~LSG 156 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE---DRPVSSLSG 156 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc---cCchhhcCH
Confidence 559999998764311 111121111 0 111222333322221 356688999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE-Eec
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSG 800 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g 800 (1361)
|||.||+|||||..+||+|||||||++||..+.+++-+.+. ..+| |+|+||||.+||.. |++|+.+++|++. +.|
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~--~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK--RYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH--hCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecC
Confidence 99999999999999999999999999999999999865443 3456 99999999999988 7999999999885 788
Q ss_pred ChHHHHhc
Q 000671 801 NYQELLLA 808 (1361)
Q Consensus 801 ~~~~l~~~ 808 (1361)
+|+...+.
T Consensus 234 ny~~~~~~ 241 (530)
T COG0488 234 NYSSYLEQ 241 (530)
T ss_pred CHHHHHHH
Confidence 88887643
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=416.97 Aligned_cols=459 Identities=9% Similarity=-0.032 Sum_probs=350.5
Q ss_pred HHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCchh------HHHHHHHHHHHHHHHHHHHH
Q 000671 887 KPFMDYLNVSKG---MSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP--KITSG------ILIGVYAGVSTASAVFVYFR 955 (1361)
Q Consensus 887 ~~y~~y~~~~~g---~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~~------~~l~iy~~l~~~~~i~~~~~ 955 (1361)
..+++|+++.+. +..+++.+++.++...+.+..+++.+..++.. ..... .++.+++++.++..+..++.
T Consensus 80 ~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~ 159 (659)
T TIGR00954 80 DFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLL 159 (659)
T ss_pred HHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566654443 23444555555666677778888877766531 11111 12223344445556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 000671 956 SFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTF-VT 1034 (1361)
Q Consensus 956 ~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~-~~ 1034 (1361)
..+......+..+++|++.+++....++.|||+ ++|++++|+++|++.+...+...+..++..++.+++.++++.. .+
T Consensus 160 ~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~ 238 (659)
T TIGR00954 160 KELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALG 238 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777888888999999999988999999997 8899999999999999999999999999999998888887775 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHH
Q 000671 1035 WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHT 1114 (1361)
Q Consensus 1035 ~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~ 1114 (1361)
|.+.++++...++..++.+++.+..+++.+..+...+...+.++|.++|+++||+|+.|+.+.+++.+..++..+.....
T Consensus 239 ~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~ 318 (659)
T TIGR00954 239 SVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLI 318 (659)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888899999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHH-h-hhhc----CCccCHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHhh
Q 000671 1115 NGVMEWLILRVEALQNLT--LFTAALF-L-VLIP----RGYVAPGLV-GLSLSY---AFTLTGTQVFLSRWYCYLANYII 1182 (1361)
Q Consensus 1115 ~~~~~wl~~rl~~l~~l~--~~~~~~~-~-vl~~----~g~is~g~~-gl~l~y---a~~l~~~l~~l~~~~~~le~~~~ 1182 (1361)
.....++....+++.... .+...+. . ++.. .|.++.|.. +.+++| ..++..++..+...+.+++...+
T Consensus 319 ~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~ 398 (659)
T TIGR00954 319 IKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAG 398 (659)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 878888877777665421 1111111 1 2222 267888764 335555 56778999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCC------CCCCCC--------C------CCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeC
Q 000671 1183 SVERIKQFMHIPPEPPA------IVEDKR--------P------PSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSE 1242 (1361)
Q Consensus 1183 sveRi~e~~~~~~E~~~------~~~~~~--------~------~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~ 1242 (1361)
+.+|+.++++.++|... ..++.. + .......|.|+|+||+++|+++ +++|+|+||+|++
T Consensus 399 ~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~ 477 (659)
T TIGR00954 399 FTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPS 477 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECC
Confidence 99999999975433110 000000 0 0000134679999999999644 3599999999999
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCC-C-------
Q 000671 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDP-L------- 1314 (1361)
Q Consensus 1243 GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP-~------- 1314 (1361)
||++||||++|||||||+++|.|+++|++|+|.+|+ |+++++|||||.+|++|+|+||.. .
T Consensus 478 Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 546 (659)
T TIGR00954 478 GNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKR 546 (659)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhc
Confidence 999999999999999999999999999999999875 789999999999999999999962 1
Q ss_pred CCCCHHHHHHHHhhCcCC--CCCCcccccCCchhhhhhcccccccee
Q 000671 1315 GLYSDDEIWKVSQLTPNS--RNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1315 ~~~sDeeI~~AL~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
.+.++++++++++.++-. .+...|.|+... .+-++|.||||++.
T Consensus 547 ~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~-~~~~LSgGqkQRl~ 592 (659)
T TIGR00954 547 RGLSDKDLEQILDNVQLTHILEREGGWSAVQD-WMDVLSGGEKQRIA 592 (659)
T ss_pred cCCCHHHHHHHHHHcCCHHHHhhcCCcccccc-cccCCCHHHHHHHH
Confidence 236789999999998532 223445666654 45689999999975
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=383.44 Aligned_cols=222 Identities=27% Similarity=0.364 Sum_probs=202.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.|+++|++++|+.+ ..++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++| .|
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 58999999999743 2469999999999999999999999999999999999998 799999987 48
Q ss_pred EEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 661 ayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
+|+||+|+++++|++||+....++.++++.++++.+++...++.+|++.+|.+++.|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999974445677888999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHHHHH
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 818 (1361)
+||||||++||+.+.+.+.+.+. ...+++|+|+|||+++.+..||+|++|++|++++.|+++++.+++..|.+++..
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~-~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLK-QAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHH-HhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 99999999999999998876554 345689999999999999889999999999999999999999877777777654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=372.97 Aligned_cols=204 Identities=27% Similarity=0.396 Sum_probs=177.9
Q ss_pred EEEEeeEEEeCCC--CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 595 VKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~--~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
|+++++++.|... ....+|+|+||+|++||+.+|+|.||+|||||+++|.++.+|++|+|.++|
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999863 235689999999999999999999999999999999999999999999998
Q ss_pred --eEEEEecCCcCCC-CCHHHHhhcCCCC---C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 659 --SIAYVSQTSWIQS-GSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 659 --~iayv~Q~~~i~~-~ti~eni~~g~~~---~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
+||+++|++.+++ .||.|||.|..+. + ++|..+.++..+|.+..+ ..+.+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~-----------~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKAD-----------RYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------cCchhcCcchhhHH
Confidence 4999999998876 7999999997542 2 234555666666664333 56789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHH
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 806 (1361)
+|||||+.+|+|+|.|||||||||++.+.|.+.+.+... -|-|+++|||.++.++. |||+.||++|+++|+|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999887655433 48999999999999987 8999999999999999999998
Q ss_pred hcC
Q 000671 807 LAG 809 (1361)
Q Consensus 807 ~~~ 809 (1361)
.++
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 765
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=361.91 Aligned_cols=203 Identities=30% Similarity=0.406 Sum_probs=176.7
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
|+++|+++.|.+ ..+++|+||+|++||+++++|||||||||+|++|.++++|++|+|.++| +||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 789999999984 4699999999999999999999999999999999999999999999998 599
Q ss_pred EEecCCcC-CCCCHHHHhhcCC---CCCH----HHHHHHHHHhcchH-HHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 662 YVSQTSWI-QSGSIRDNILYGK---PMDK----ARYDKAIKACALDK-DINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 662 yv~Q~~~i-~~~ti~eni~~g~---~~~~----~~~~~~~~~~~l~~-dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
||-|+.-+ ++.||.|||.+-- .+++ ++.++.++..+|++ ++. .+.+.+|||||+|||.+||
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~----------~RyP~eLSGGQQQRVGv~R 148 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYA----------DRYPHELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHh----------hcCchhcCcchhhHHHHHH
Confidence 99999765 5779999998742 2444 45667777778864 232 2567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHH-hhcCeEEEEeCCeEEEecChHHHHhcCc
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1361)
||+.+|+|+|+||||+||||-+++.+-+++..... -++|+|+||||+++. +-+|||.+|++|+|++.++|++++.+..
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 99999999999999999999999998777665443 389999999999875 5599999999999999999999997653
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=365.26 Aligned_cols=190 Identities=33% Similarity=0.453 Sum_probs=166.8
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEec
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------~iayv~Q 665 (1361)
.+.+++++.+|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++| .+|||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 5789999999985 4699999999999999999999999999999999999999999999987 5899999
Q ss_pred CCcC-CCCCHHHHhhcCCCCC-------HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 000671 666 TSWI-QSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1361)
Q Consensus 666 ~~~i-~~~ti~eni~~g~~~~-------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1361)
++-+ +..||+||+.||.+.. .++.++.++.++|...-+ ..+.+|||||||||+||||++.+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~-----------~~P~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFED-----------KYPHQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhh-----------cCccccChHHHHHHHHHHHHhcC
Confidence 9765 5789999999986531 346777888888876554 45678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHh-hcCeEEEEeC--CeEE
Q 000671 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEG--GQIT 797 (1361)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~--G~i~ 797 (1361)
|+++||||||+|||+.|+.++.+.+.+.+. .++|+++||||+++.- -+|||++|.+ |+|.
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999888877654 4799999999998854 5899999998 4453
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=365.11 Aligned_cols=201 Identities=32% Similarity=0.528 Sum_probs=176.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEE
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAY 662 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----------~iay 662 (1361)
..|+++|++++|+++ ++|+||||++++|++++|+||||||||||+|+|+|+++|.+|+|.+.| +|||
T Consensus 3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 358999999999854 499999999999999999999999999999999999999999999875 5999
Q ss_pred EecC---CcCCCCCHHHHhhcCCCC-----------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 663 VSQT---SWIQSGSIRDNILYGKPM-----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 663 v~Q~---~~i~~~ti~eni~~g~~~-----------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
|||. .|-|..||+|-+..|... |.+..+++++..++.+..+ .+..+|||||+|||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-----------r~i~~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-----------RQIGELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-----------CcccccCcHHHHHH
Confidence 9996 467899999999987432 3477888999998874332 55678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
-|||||+++||+++|||||+|+|+++++.+++.+.+...+|+||++||||++.+.. +|+|+.|+ +++...|++++...
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 99999999999999999999999999999998766665669999999999998765 89999985 57888999999875
Q ss_pred c
Q 000671 808 A 808 (1361)
Q Consensus 808 ~ 808 (1361)
.
T Consensus 228 ~ 228 (254)
T COG1121 228 E 228 (254)
T ss_pred H
Confidence 4
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=366.80 Aligned_cols=201 Identities=26% Similarity=0.412 Sum_probs=177.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++|+|+. +++++|+||++++||+++|+|||||||||||++|+|.++|.+|+|.++| .+
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999984 4799999999999999999999999999999999999999999999998 59
Q ss_pred EEEecCCcC-CCCCHHHHhhcCCC-----------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 661 AYVSQTSWI-QSGSIRDNILYGKP-----------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 661 ayv~Q~~~i-~~~ti~eni~~g~~-----------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
||+||++.. ++.||+|-+.+|+. .|.+...++++.+++.+..+ +...+|||||||||
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~-----------r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD-----------RPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc-----------CcccccChhHHHHH
Confidence 999999754 67799999999852 13345677788888876543 45678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHH-hhcCeEEEEeCCeEEEecChHHHH
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1361)
.|||||+++|++++||||||+||...+-++++.+.+.. .+|+|+|+|+||++.. +.||++++|++|+++.+|+++|++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999998877665 4589999999999985 569999999999999999999987
Q ss_pred hc
Q 000671 807 LA 808 (1361)
Q Consensus 807 ~~ 808 (1361)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 53
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=346.44 Aligned_cols=206 Identities=27% Similarity=0.400 Sum_probs=180.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCC-----cEEEEcC---------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS-----GTVNLYG--------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~-----G~v~~~g--------- 658 (1361)
..++++|+++.|.. ..+|+|||++|++++++|++||+||||||||+++.++.+..+ |+|.++|
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 46899999999984 459999999999999999999999999999999999988765 8998887
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCCC---C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~~---~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
+||+|+|.|.-|..||+|||.||... . ++..++.++.++|.+..+. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 49999999999999999999998432 1 3457777888888876653 23467888999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||+|||||+.-+|+|+|||||||||||.+..+|- +++..+.++-|+|+|||+++...+ +|+...+.+|+++|.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIE-eLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIE-ELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHH-HHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 9999999999999999999999999999999974 566666788899999999998877 69999999999999999999
Q ss_pred HHhcC
Q 000671 805 LLLAG 809 (1361)
Q Consensus 805 l~~~~ 809 (1361)
+..+.
T Consensus 235 iF~~P 239 (253)
T COG1117 235 IFTNP 239 (253)
T ss_pred hhcCc
Confidence 87653
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=376.82 Aligned_cols=203 Identities=32% Similarity=0.423 Sum_probs=180.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iay 662 (1361)
.|+++|++++|.+.. +++|+|++|++||+++++|||||||||||++|+|+.+|++|+|.++| .||+
T Consensus 3 ~i~l~~v~K~yg~~~---~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSFE---VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCce---eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 589999999997531 89999999999999999999999999999999999999999999988 4999
Q ss_pred EecCCcC-CCCCHHHHhhcCCCCC-------HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQTSWI-QSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~~~i-~~~ti~eni~~g~~~~-------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
|+|+.-+ +.+||+|||.||.... +++++++.+..+++..++ .++.+||||||||||||||+
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~-----------r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN-----------RKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHh-----------cCcccCChhhHHHHHHHHHH
Confidence 9999766 5679999999986542 567888888899988877 46678999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHh-hcCeEEEEeCCeEEEecChHHHHhcCc
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1361)
.++|+++|||||+|+||++.+..+..++.+... -+.|+|+||||..++. -+|||+||++|+|.+.|++.|+.++..
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 999999999999999999999998877665443 3789999999987765 589999999999999999999986543
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=407.39 Aligned_cols=179 Identities=23% Similarity=0.335 Sum_probs=148.8
Q ss_pred eeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEE-----------EcC---------
Q 000671 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-----------LYG--------- 658 (1361)
Q Consensus 599 ~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~-----------~~g--------- 658 (1361)
+.++.|..+ ..+|++++ .+++||+++|+||||||||||+++|+|+++|++|+|. ++|
T Consensus 78 ~~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 478888643 36899999 9999999999999999999999999999999999996 544
Q ss_pred ------eEEEEec----CCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 659 ------SIAYVSQ----TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 659 ------~iayv~Q----~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
.++|.+| .|.++.+|++||+.+.. ..++.+++++..++....+ .+..+||||||||+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv 221 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENILD-----------RDISELSGGELQRV 221 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 2455554 56667789999997521 2345677777777754432 46678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCC
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1361)
+||||++++|++|+||||||+||+....++++.+..... |+|+|++||+++.+.. +|+|++|++|
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999876655545 8999999999999876 7999999763
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=378.16 Aligned_cols=204 Identities=30% Similarity=0.435 Sum_probs=180.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEE
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~ia 661 (1361)
..++++|++.+|. +..+++|+||+|++||+++++|||||||||+|++|+|+..|++|+|.++| .|+
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4699999999998 35799999999999999999999999999999999999999999999998 499
Q ss_pred EEecCCcCC-CCCHHHHhhcCCCC----C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 662 YVSQTSWIQ-SGSIRDNILYGKPM----D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 662 yv~Q~~~i~-~~ti~eni~~g~~~----~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
+|+|+.-+| +.||+|||.||... . ++++.++++..+|....+ +++.+|||||||||+|||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~-----------R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD-----------RKPHQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh-----------hChhhhChHHHHHHHHHH
Confidence 999997665 67999999999761 2 237778888888876443 677899999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchH-HhhcCeEEEEeCCeEEEecChHHHHhcCc
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1361)
||..+|+++|||||+||||.+.++++-.++.+... .|.|.|+||||.+. +..+|||+||++|+|.+.|+++|+.....
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~ 229 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPA 229 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcc
Confidence 99999999999999999999999998877766543 48999999999976 56689999999999999999999987653
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=345.27 Aligned_cols=205 Identities=27% Similarity=0.405 Sum_probs=177.5
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
+..|+++++++++.+ +.+++|+||+|++||+++|+|+|||||||||++|.|+++|++|+|.+.|
T Consensus 6 ~~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 457999999999974 4699999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEecCCcCCC-CCHHHHhhcCC----CCCHHHH----HHHHHHhcchHH-HhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ---SIAYVSQTSWIQS-GSIRDNILYGK----PMDKARY----DKAIKACALDKD-INNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ---~iayv~Q~~~i~~-~ti~eni~~g~----~~~~~~~----~~~~~~~~l~~d-l~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
++|+++|+.-+|. .||+||+.|.. ..+++.+ ...+++++|..+ .+. .+.+||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~-----------~PsELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADL-----------YPSELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhh-----------CchhhcchHH
Confidence 4999999988774 69999999953 2444443 345778888877 454 4568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc--CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecCh
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1361)
+|++||||+..||+++++|||||||||.+...+ ++++..+. -+-|+|+||||++.+.. ||+|+++.||+|+..|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 999999999999999999999999999999875 45554433 37899999999998876 799999999999999999
Q ss_pred HHHHhcCch
Q 000671 803 QELLLAGTA 811 (1361)
Q Consensus 803 ~~l~~~~~~ 811 (1361)
+|+.+.+..
T Consensus 231 ~el~~sd~P 239 (263)
T COG1127 231 EELLASDDP 239 (263)
T ss_pred HHHHhCCCH
Confidence 999886653
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=357.08 Aligned_cols=202 Identities=31% Similarity=0.431 Sum_probs=176.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.|.++|.+..|+. .++++|||++|+.||++++.|||||||||||++|+|+..|++|.|.++| +
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 4778888888874 4689999999999999999999999999999999999999999999987 4
Q ss_pred EEEEecCCcC-CCCCHHHHhhcCCCC---------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 660 IAYVSQTSWI-QSGSIRDNILYGKPM---------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 660 iayv~Q~~~i-~~~ti~eni~~g~~~---------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
||||+|+.-+ +.+||.|||.||.+. .+.+..+.++.|+|+.--+ ..+..|||||||||+
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-----------ryP~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-----------RYPAQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-----------cCchhcChHHHHHHH
Confidence 9999999766 467999999999732 2456777788888864433 467799999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHh-hcCeEEEEeCCeEEEecChHHHHh
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||||+..+|++||||||++|||++..+.+-..+.+...+ |.|+++||||.++.. .||||++|++|+|.+.|+++|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999999987766655444 889999999998865 589999999999999999999976
Q ss_pred cC
Q 000671 808 AG 809 (1361)
Q Consensus 808 ~~ 809 (1361)
..
T Consensus 228 ~P 229 (345)
T COG1118 228 HP 229 (345)
T ss_pred CC
Confidence 54
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=364.31 Aligned_cols=220 Identities=40% Similarity=0.707 Sum_probs=197.3
Q ss_pred cCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCc
Q 000671 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668 (1361)
Q Consensus 589 ~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~ 668 (1361)
+.....++++|+++.+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.|+|++|+++
T Consensus 34 ~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~ 108 (282)
T cd03291 34 SSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSW 108 (282)
T ss_pred CCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCccc
Confidence 3455679999999962 35999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000671 669 IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1361)
Q Consensus 669 i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1361)
+++.|++||+.++......++.+.++++++.+.++.++.+.++.+++++.+||||||||++||||++++|+++||||||+
T Consensus 109 l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~ 188 (282)
T cd03291 109 IMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188 (282)
T ss_pred ccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 98899999999876555556777888889988899999998888999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHH
Q 000671 749 AVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1361)
Q Consensus 749 alD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 813 (1361)
+||+.+.+.+.+.++....+++|+|++||+++.+..||++++|++|++++.|+++++......+.
T Consensus 189 gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 253 (282)
T cd03291 189 YLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFS 253 (282)
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHH
Confidence 99999999888766554456889999999999998899999999999999999999876544333
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=348.72 Aligned_cols=193 Identities=28% Similarity=0.412 Sum_probs=165.0
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
++++|++..|..+. ..++|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.++|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 56889999887542 24689999999999999999999999999999999999999999999987
Q ss_pred --eEEEEecCCc-CCCCCHHHHhhcC----CCC---CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 659 --SIAYVSQTSW-IQSGSIRDNILYG----KPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 659 --~iayv~Q~~~-i~~~ti~eni~~g----~~~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
.||||+|+.. +++.|++|||.++ ... ..++.++.++..+|.+.... .++.+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~----------~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLK----------KKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhcc----------CCchhcCHHHHHHH
Confidence 3999999965 5788999999853 211 13455666666677654431 45779999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeEE
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1361)
|||||++.+|++++.||||.+||.++++.+++.+..... .|+|+|+||||.+....|||++.|+||++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999987766544 489999999999999999999999999954
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=358.68 Aligned_cols=219 Identities=31% Similarity=0.469 Sum_probs=193.1
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
++++|+++.|+.. ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4689999999643 24699999999999999999999999999999999999999999999987 389
Q ss_pred EEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 662 yv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
|++|++++++.|++||+.++.. ...++..+.++..++.+.++.+|.|..+..++++.+|||||||||+||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999988999999998653 344555666777788888888888888878889999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchHHHH
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 815 (1361)
+||||||++||+...+.+.+.+... .+|+|+|++||+++.+..||++++|++|++++.|+++++.++.+.+..+
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHH
Confidence 9999999999999999988766544 4689999999999999889999999999999999999988776555543
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=351.98 Aligned_cols=201 Identities=56% Similarity=0.983 Sum_probs=183.9
Q ss_pred EEEEeeEEEeCCCCC--CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcCCCC
Q 000671 595 VKIQEGNFSWDPELA--IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~--~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i~~~ 672 (1361)
++++|+++.|++... .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+|+|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 468999999975321 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q 000671 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1361)
Q Consensus 673 ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~ 752 (1361)
|++||+.++..+++++..++.+.+++.+.+..+|.|.+|.+++++.+||||||||++||||++++|++++|||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999999877766677888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEEccCchHHhhcCeEEEEeCCe
Q 000671 753 HTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1361)
Q Consensus 753 ~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1361)
+..+.+++.++... .+++|+|++||+++.+..+|++++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999887665433 45799999999999988899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=340.46 Aligned_cols=200 Identities=30% Similarity=0.436 Sum_probs=173.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
.|+++|++..|+.+ +.+|+||||+|++||+++|+|++||||||||++|.|+.+|++|+|.++|
T Consensus 3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 58999999999853 5799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEecCCcC-CCCCHHHHhhcCCC------------CCHHH---HHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 659 -SIAYVSQTSWI-QSGSIRDNILYGKP------------MDKAR---YDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 659 -~iayv~Q~~~i-~~~ti~eni~~g~~------------~~~~~---~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
+|||++|++.+ ...||.+|++.|+- +.++. .-++++..++.+... .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 49999999875 67899999987641 23333 334555556655433 5678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEe
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1361)
|||+|||+|||||+++|+++|-|||+++|||.+++++++.+.+.. ..|.|+|+.-|++++..+ ||||+-|++|+|++.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999998877654 468999999999999765 899999999999999
Q ss_pred cChHHHH
Q 000671 800 GNYQELL 806 (1361)
Q Consensus 800 g~~~~l~ 806 (1361)
|+.+|+.
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9999864
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=323.09 Aligned_cols=199 Identities=29% Similarity=0.437 Sum_probs=175.0
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
+.++++.|+|...+ =..+++|++||+++|+||+||||||||++|.|+..|.+|+|.++| .++++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 56788999997532 357899999999999999999999999999999999999999998 39999
Q ss_pred ecCCcCCC-CCHHHHhhcCCC-------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 664 SQTSWIQS-GSIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 664 ~Q~~~i~~-~ti~eni~~g~~-------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+|+..+|. .||.+||.+|.. .+.++++.++...+|...++.+|. +|||||||||+|||++.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHh
Confidence 99999886 499999999853 345678888899999988887764 79999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
++.+|+|||||||||||.-+.++...+.... .++.|+++|||+++.+.. +|+++++++|+|.++|+.+++....
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 9999999999999999999998876555443 357899999999998876 8999999999999999999987543
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=351.32 Aligned_cols=202 Identities=28% Similarity=0.482 Sum_probs=181.0
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|++|+|+++ .++|+|+|++|++||.++|+|+||||||||++++.|+++|++|.|.++| +
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999876 5799999999999999999999999999999999999999999998876 3
Q ss_pred EEEEecCC--cCCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 660 IAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 660 iayv~Q~~--~i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
+|||+|+| .++..||.|.+.||.. .+ +++.+++++.|++....+ ..+.+|||||||||+|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-----------r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-----------RPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-----------CCccccCCcceeeHHh
Confidence 99999999 5789999999999853 33 356778888899887654 4567999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|.+|..+|++++||||||+||+...+.+.+.+.+...+ |+|+|++|||++.+.. ||++++|++|+++.+|+++++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999998877666555 6899999999999877 999999999999999999888754
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=354.25 Aligned_cols=215 Identities=32% Similarity=0.503 Sum_probs=190.4
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
++++|+++.|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999753335699999999999999999999999999999999999999999999877 399
Q ss_pred EEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 662 yv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
|++|++.+++.|++||+.++.. ...++..+.++.+++.+.++.+|.|..+..+.+..+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998888899999998754 334556667777888888888988888888888999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCc
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1361)
+||||||++||+...+.+.+.+.... +|+|+|++||+++.+..||++++|++|++++.|+.+++.....
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 229 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKG 229 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcCh
Confidence 99999999999999999887665544 7899999999999988899999999999999999888865443
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=357.60 Aligned_cols=192 Identities=27% Similarity=0.421 Sum_probs=171.0
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~------------- 659 (1361)
..+++++.+..|+ ...+++||||+|++||+.|++|.||+|||||+++|.|.++|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 4689999999998 356899999999999999999999999999999999999999999999983
Q ss_pred -EEEEecCCcC-CCCCHHHHhhcCCCC------C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 660 -IAYVSQTSWI-QSGSIRDNILYGKPM------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 660 -iayv~Q~~~i-~~~ti~eni~~g~~~------~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
||+|.|++-+ .+.||.|||..|.+- + .++.++..+..++.-|.+ ++..+||=|||||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLsVG~qQR 148 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLSVGEQQR 148 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCCcchhHH
Confidence 9999999865 677999999998752 2 345666677777765554 5677899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
|.|-+|||++|+++|||||||-|-|...+++|+.+.+...+|+|||++||.++++.. ||++-||+.|+++.
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 999999999999999999999999999999999877777789999999999999876 89999999999763
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=336.35 Aligned_cols=205 Identities=25% Similarity=0.416 Sum_probs=177.4
Q ss_pred cEEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
.++++|.++.|+... ..++++||||+|.+||.++|+|++|||||||.++|+|+.+|++|+|.++|
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 578999999998642 12489999999999999999999999999999999999999999999988
Q ss_pred eEEEEecCCc--C-CCCCHHHHhhcCC-----CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSW--I-QSGSIRDNILYGK-----PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~--i-~~~ti~eni~~g~-----~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.|-+|+|+|. + +..||++-|.-+. +..+++..++++..+|.+.... +++.+|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~----------R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLD----------RRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHh----------cCchhcChhHHHHHHH
Confidence 3889999985 2 5569998876432 2234567888999998766542 5677899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
||||..+|+++|+|||||+||+.++..|++.+.+... .+-|.|+||||+..+.+ ||||+||++|+++|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999987665433 46799999999999987 899999999999999999998865
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=350.83 Aligned_cols=211 Identities=30% Similarity=0.504 Sum_probs=190.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|+.+ .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 58899999999632 3589999999999999999999999999999999999999999999876 38
Q ss_pred EEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCC
Q 000671 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1361)
Q Consensus 661 ayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1361)
+|++|++++++.|++||+.++.+ ...++..+.++.+++...++.+|.|..+.++.+..+||||||||++||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999888899999998754 34566777888889998899999888888889999999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHh
Q 000671 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
++||||||++||+.+.+.+.+.+... .+++|+|++||+++.++.||++++|++|++++.|+.+++..
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999988766544 46899999999999988899999999999999999888764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=354.48 Aligned_cols=222 Identities=27% Similarity=0.393 Sum_probs=196.9
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
.+.++++|++++|+.. ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 4579999999999753 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 000671 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 659 ~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1361)
.++|++|+|++++.|++||+........+++.++++..++.+.++.+|.|.++.+++++.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999765444556677888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcC-chHHHH
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG-TAFEQL 815 (1361)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~ 815 (1361)
++++|||||++||+++.+.+++.+.. ..+++|+|++||+++.+..||+|++|++|++++.|+++++.+.. +.+.++
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~-~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMT-AFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHH-hcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 99999999999999999888765543 45689999999999999889999999999999999999987653 234443
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=350.87 Aligned_cols=214 Identities=32% Similarity=0.540 Sum_probs=190.6
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
++++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|.|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999643 23689999999999999999999999999999999999999999999876 389
Q ss_pred EEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 662 yv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
|++|++++++.|++||+.++.. ...+.+.+.++.+.+.+.++.++.|..+..+.++.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988999999998754 345567777788888888999988888888889999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCc
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1361)
+||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+..||++++|++|++++.|+++++.....
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERL-MKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 9999999999999999987765443 46899999999999998899999999999999999988876543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=350.31 Aligned_cols=215 Identities=33% Similarity=0.560 Sum_probs=191.1
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
++++|++++|+.+ .++++|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999642 3589999999999999999999999999999999999999999999987 289
Q ss_pred EEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 662 yv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
|++|++++++.|++||+.++.. ...+...+.++.+++.+.++.++.|.++.++.++.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998753 344556677788889888899999989988899999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhcCchH
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 812 (1361)
+||||||++||+++.+.+.+.+.... +++|+|++||+++.+..||++++|++|++++.|+.+++......+
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~ 229 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLY 229 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHH
Confidence 99999999999999999887665443 489999999999999889999999999999999998887654443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=369.08 Aligned_cols=203 Identities=25% Similarity=0.355 Sum_probs=174.1
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
|+++|++++|+.+. ..++|+|+||+|++||+++|+|+||||||||+++|.|+.+|++|+|.++|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996422 24699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEecCCcCC-CCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 -~iayv~Q~~~i~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
+|||++|++.++ +.|++||+.++.. .++ ++..++++..+|.+..+ ..+.+|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-----------~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-----------SYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 389999998876 5799999988532 222 34455666666654332 566799999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||||++.+|+++|||||||+||+.+.+.+.+.+.+...+ |.|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 999999999999999999999999999998766654443 8999999999999876 89999999999999999999976
Q ss_pred c
Q 000671 808 A 808 (1361)
Q Consensus 808 ~ 808 (1361)
.
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 4
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=370.18 Aligned_cols=203 Identities=31% Similarity=0.449 Sum_probs=176.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iay 662 (1361)
.++++|++++|+. +.++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .|||
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 3789999999942 24699999999999999999999999999999999999999999999987 3999
Q ss_pred EecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
|+|++.++ +.||+|||.|+.. .+ .++.+++++.++|....+ .++.+|||||||||+||||+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLD-----------RKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 99999887 5799999998743 22 234567777777765444 45679999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
+.+|+++|||||||+||+.+++.+.+.+.+...+ |.|+|+||||++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 9999999999999999999999998876654443 8999999999998754 8999999999999999999997654
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=345.96 Aligned_cols=206 Identities=28% Similarity=0.436 Sum_probs=187.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|+.. +.++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 47899999999743 24699999999999999999999999999999999999999999999876 38
Q ss_pred EEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 661 ayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
+|++|++.+++.|++||+.+......++..+.++..++.+.+..++.|..+..++++.+||||||||++||||++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999988999999987666667778888899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecC
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1361)
++|||||++||+.+.+.+.+.+.+ ..+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIRE-AFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999998776554 345789999999999998899999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=361.96 Aligned_cols=193 Identities=27% Similarity=0.390 Sum_probs=165.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~------------- 659 (1361)
.-++++|++++|+. .++|+|+||++.+||+++++|.||+|||||+|.|.|.++|++|+|.++|+
T Consensus 7 ~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 35889999999985 47999999999999999999999999999999999999999999999983
Q ss_pred -EEEEecCCcC-CCCCHHHHhhcCCCC-------CHHH----HHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 660 -IAYVSQTSWI-QSGSIRDNILYGKPM-------DKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 660 -iayv~Q~~~i-~~~ti~eni~~g~~~-------~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
|+.|.|+..+ ++.||.|||-+|++. |..+ .+++++..++..| ...+..+||+||||
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-----------~~~~v~~LsiaqrQ 152 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-----------PDTLVGDLSIAQRQ 152 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-----------hhhhhhhCCHHHHH
Confidence 9999999765 788999999888652 2222 2233333333211 23566789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEe
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1361)
-|+||||+..++++++||||||+|+.+..+++|+.+.+...+|.++|+|||+++++.. ||||.||+||+.+..
T Consensus 153 ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 153 MVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 9999999999999999999999999999999998877777789999999999999876 899999999998854
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=320.56 Aligned_cols=193 Identities=24% Similarity=0.398 Sum_probs=173.8
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
|+|+|++..|+.. .++|+|+||+|++||++-|+|||||||||||++|.++.+|+.|+|.++|
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999975 5799999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCc-CCCCCHHHHhhcCCCC-------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSW-IQSGSIRDNILYGKPM-------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~-i~~~ti~eni~~g~~~-------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
+||+|+|+.- +.+.||.||+.|.... -+++..++++..+|......+|. .|||||||||+|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 5999999975 5788999999996432 24567788999999988887764 799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhc-CeEEEEeCCeEEEec
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSG 800 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~-d~i~~l~~G~i~~~g 800 (1361)
|||+..+|+++|-||||-+|||..+..|++...+....|.||+++|||.+.+... .+++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999999999999987666667899999999999999886 899999999998643
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=361.81 Aligned_cols=208 Identities=23% Similarity=0.387 Sum_probs=174.7
Q ss_pred CCCcEEEEeeEEEeCCCC--CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------
Q 000671 591 SDRSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------- 658 (1361)
.+..|+++|++|+|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 345699999999997432 24699999999999999999999999999999999999999999998864
Q ss_pred -------------------eEEEEecCC--cCCCCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCC
Q 000671 659 -------------------SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDL 710 (1361)
Q Consensus 659 -------------------~iayv~Q~~--~i~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~ 710 (1361)
.|+||+|+| .+++.|++|||.|+.. .+. ++..+.++.+++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------- 168 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDS--------- 168 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChh---------
Confidence 279999998 6788899999998732 222 233444555554322
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHh-hcCeEE
Q 000671 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRIL 789 (1361)
Q Consensus 711 t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~ 789 (1361)
..++++.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+. .||+|+
T Consensus 169 -~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 169 -YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred -HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 134678899999999999999999999999999999999999999998766554456899999999999875 599999
Q ss_pred EEeCCeEEEecChHHHHhc
Q 000671 790 VLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 790 ~l~~G~i~~~g~~~~l~~~ 808 (1361)
+|++|++++.|+++++...
T Consensus 248 vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EEECCEEEEeCCHHHHhcC
Confidence 9999999999999998754
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=364.96 Aligned_cols=203 Identities=27% Similarity=0.356 Sum_probs=174.9
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEE
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~ia 661 (1361)
..++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| +||
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 36899999999963 4589999999999999999999999999999999999999999999987 499
Q ss_pred EEecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000671 662 YVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1361)
Q Consensus 662 yv~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1361)
||+|++.++ +.||+|||.|+.. .+ +++.+++++..++....+ .++.+|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~-----------r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED-----------RYVDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHH
Confidence 999999876 5699999999743 22 234556666666653322 5677999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
++.+|+++|||||||+||+..++.+.+.+.....+ ++|+|+||||.+.+.. ||+|++|++|+|++.|+++++..+.
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999988766554433 8999999999998755 8999999999999999999997654
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=348.88 Aligned_cols=200 Identities=27% Similarity=0.384 Sum_probs=169.1
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 3699999999999999999999999999999999999999999998876
Q ss_pred eEEEEecCCcCCC-CCHHHHhhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 ~iayv~Q~~~i~~-~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
.++|++|++.+++ .|++||+.++.. .+. ++..++++.+++.... ..+..+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 2899999987765 599999987522 222 2344556666554332 2456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||||++.+|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999876655444 48999999999998876 89999999999999999988764
Q ss_pred c
Q 000671 808 A 808 (1361)
Q Consensus 808 ~ 808 (1361)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 3
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=342.59 Aligned_cols=205 Identities=39% Similarity=0.607 Sum_probs=183.2
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|+++.|+.. ..++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 47899999999642 24699999999999999999999999999999999999999999999877 38
Q ss_pred EEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCC
Q 000671 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1361)
Q Consensus 661 ayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1361)
+|++|++++++.|++||+.++.. .++++..+.++.+++.+.++..|.|..|.+.++..+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999998888899999988644 34556778888999998899999999999888999999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEec
Q 000671 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1361)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 800 (1361)
++||||||++||+.+.+.+++.+... .+++|+|++||+++.+..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQL-LGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999988766544 3348999999999988779999999999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=366.24 Aligned_cols=189 Identities=26% Similarity=0.361 Sum_probs=164.3
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEEEEecCCcCCC-
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQS- 671 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------------~iayv~Q~~~i~~- 671 (1361)
+++++|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| .++||+|++++++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 4689999999999999999999999999999999999999999999877 4999999999876
Q ss_pred CCHHHHhhcCCCC---CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 000671 672 GSIRDNILYGKPM---DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1361)
Q Consensus 672 ~ti~eni~~g~~~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLD 744 (1361)
.||+|||.|+.++ +. ++..++++.++|.... ++++.+|||||||||+||||++.+|+++|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~-----------~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYE-----------HRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6999999986432 22 3345556666664433 3667799999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 745 DPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 745 ep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
|||||||+.+++.+.+.+..... .++|+|+||||++++.. ||+|++|++|++++.|+++++..+.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 99999999999999988776544 48999999999998655 8999999999999999999998653
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=339.26 Aligned_cols=396 Identities=16% Similarity=0.206 Sum_probs=286.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHH
Q 000671 942 AGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGT 1021 (1361)
Q Consensus 942 ~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~ 1021 (1361)
..+.++.+++.++|+.++.+.+.+.-+.+....|...+++|..--...+....+ +|.+++..++...-...+...-
T Consensus 70 l~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaP 145 (580)
T COG4618 70 LGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAP 145 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCc
Confidence 344566778889999999999999999999999999988877654333333443 4888888776542221111111
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHH
Q 000671 1022 ELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101 (1361)
Q Consensus 1022 ~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~ 1101 (1361)
..-.-+++++.+.|++.++++.-.++.+.+..+--...|+--+..++..+.-.++..-+..+..+|+|.|...+..++..
T Consensus 146 W~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~ 225 (580)
T COG4618 146 WMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWG 225 (580)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHH
Confidence 12223345555666665554433333332222222233333334444455567788889999999999998766555544
Q ss_pred HHH----HHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 1102 KLV----DIDASLFFHTNGV---MEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWY 1174 (1361)
Q Consensus 1102 ~~~----d~~~~~~~~~~~~---~~wl~~rl~~l~~l~~~~~~~~~vl~~~g~is~g~~gl~l~ya~~l~~~l~~l~~~~ 1174 (1361)
+.. +.+.++....... .+-+-..++ ..+.++.++++.+|.+|+|.....--.+.....|+-..+..|
T Consensus 226 ~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQ------s~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~W 299 (580)
T COG4618 226 RFNAAYLSAQERASDRNGAFGALSRALRMALQ------SAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANW 299 (580)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------HHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHH
Confidence 443 3333333222221 122211111 123344467778999999988776666667778999999999
Q ss_pred HHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCC
Q 000671 1175 CYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGS 1254 (1361)
Q Consensus 1175 ~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGS 1254 (1361)
.++-.+..|-.|+.+.++..++... .-+.|. .+|.+..|++++.=++...++|+||||+++|||-+||||||||
T Consensus 300 kq~~~Ar~s~~Rl~~lL~~~p~~~~---~m~LP~---P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgS 373 (580)
T COG4618 300 KQFVAARQSYKRLNELLAELPAAAE---RMPLPA---PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGS 373 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccC---CCCCCC---CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCc
Confidence 9999999999999999986555432 112222 3799999999986555556899999999999999999999999
Q ss_pred cHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhC----
Q 000671 1255 GKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLT---- 1329 (1361)
Q Consensus 1255 GKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~---- 1329 (1361)
|||||.++|.+.+.|.+|+|.+||-|+++.+.++|=++|||.|||--||+|||+|||.-|+ +.++|.|.+|.+.+
T Consensus 374 GKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHe 453 (580)
T COG4618 374 GKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHE 453 (580)
T ss_pred cHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHH
Confidence 9999999999999999999999999999999999999999999999999999999999888 67788899999998
Q ss_pred -----cCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1330 -----PNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1330 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
|++++|.| +++|..+|.||||++.
T Consensus 454 lIl~lP~GYdT~i------G~~G~~LSgGQRQRIa 482 (580)
T COG4618 454 LILRLPQGYDTRI------GEGGATLSGGQRQRIA 482 (580)
T ss_pred HHHhCcCCccCcc------CCCCCCCCchHHHHHH
Confidence 46666666 5678889999999874
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=355.86 Aligned_cols=204 Identities=21% Similarity=0.395 Sum_probs=173.6
Q ss_pred EEEEeeEEEeCCCCC--CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 595 VKIQEGNFSWDPELA--IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~--~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
|+++|++|+|+.+.. +++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 689999999974321 3599999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEecCC--cCCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ---~iayv~Q~~--~i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|+| .+++.|+.||+.|+.. .+ ++++.++++..++..++. .+.+.+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW----------EKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc----------cCCcccCCHHHHH
Confidence 279999998 6778899999998742 22 234566666666643322 2567899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
|++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999887655444468999999999998865 999999999999999999998
Q ss_pred Hhc
Q 000671 806 LLA 808 (1361)
Q Consensus 806 ~~~ 808 (1361)
..+
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 653
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=354.26 Aligned_cols=204 Identities=25% Similarity=0.392 Sum_probs=175.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48899999999753234699999999999999999999999999999999999999999999887 38
Q ss_pred EEEecCCc--CCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 661 AYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 661 ayv~Q~~~--i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|++|+|. ++..||+|||.|+.. .+ .++..++++.+++....+ ..+.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999984 567899999998732 22 245667777777765443 45678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999988766554443 8999999999999877999999999999999999988654
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=355.78 Aligned_cols=204 Identities=23% Similarity=0.375 Sum_probs=174.1
Q ss_pred EEEEeeEEEeCCCC--CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|.|+.+|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997432 14699999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEecCC--cCCCCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ---~iayv~Q~~--~i~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.|+|++|+| .+++.|++|||.|+.. .+. ++.+++++.++|..++. ..++.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 289999998 5778899999998632 222 34566777777754332 2467789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
|++||||++.+|+++||||||++||+.+.+.+.+.+..... .|.|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999998876655434 38999999999999865 89999999999999999998
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8654
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=364.26 Aligned_cols=202 Identities=30% Similarity=0.397 Sum_probs=175.8
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iay 662 (1361)
.++++|++++|+. ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .+||
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 5899999999974 3589999999999999999999999999999999999999999999987 3999
Q ss_pred EecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
|+|++-++ ..||+|||.|+.. .+ .++.+++++..+|.+.++ .++.+|||||||||+||||+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 99999876 5799999998743 22 235566666666654333 56789999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
+.+|+++|||||||+||+..++++.+.+.+...+ +.|+|+||||.+.+.. ||+|++|++|++++.|+++++.++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999998776654443 8999999999998755 8999999999999999999998754
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=363.29 Aligned_cols=204 Identities=27% Similarity=0.365 Sum_probs=176.4
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eE
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SI 660 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~i 660 (1361)
...++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .+
T Consensus 12 ~~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 12 SPLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred CceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 345899999999974 3589999999999999999999999999999999999999999999987 39
Q ss_pred EEEecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 661 AYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 661 ayv~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
||++|++.++ ..||+|||.|+.. .+ .++.+++++..++...++ .++.+|||||||||+|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQ-----------RKPHQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHHHHH
Confidence 9999998776 5699999998743 22 234566677777765444 456789999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHh-hcCeEEEEeCCeEEEecChHHHHhcC
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
||+.+|+++|||||||+||++.++.+.+.+..... .|.|+|+||||.+.+. .+|+|++|++|+|++.|+++++..+.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999998877665444 3899999999999865 48999999999999999999998754
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=354.36 Aligned_cols=206 Identities=26% Similarity=0.412 Sum_probs=173.1
Q ss_pred cEEEEeeEEEeCCCC--CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999997532 14699999999999999999999999999999999999999999998876
Q ss_pred --eEEEEecCC--cCCCCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 --SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 --~iayv~Q~~--~i~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.+||+||+| .+++.|++|||.|+.. .++ ++..++++.++|.. .+....++.+||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHH
Confidence 389999998 5678899999998632 232 24456666666641 011235678999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999876655444 38999999999999864 999999999999999999988
Q ss_pred Hhc
Q 000671 806 LLA 808 (1361)
Q Consensus 806 ~~~ 808 (1361)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13637 233 FKE 235 (287)
T ss_pred HhC
Confidence 653
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=362.75 Aligned_cols=203 Identities=28% Similarity=0.412 Sum_probs=175.8
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCC--cEEEEcC-----------e
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS--GTVNLYG-----------S 659 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~--G~v~~~g-----------~ 659 (1361)
+.++++|++++|+. ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++ |+|.++| .
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 46899999999974 358999999999999999999999999999999999999999 9999987 3
Q ss_pred EEEEecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 660 IAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 660 iayv~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
|+||+|++.++ ..||+|||.|+.. .+ +++.+++++..+|.+..+ .++.+|||||||||+||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA-----------HLPAQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhh-----------CChhhCCHHHHHHHHHH
Confidence 99999999876 5699999998642 22 234566677666654433 56679999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC--CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
||++.+|+++|||||||+||+..++++.+.+.+...+ |.|+|+||||++++.. ||+|++|++|++++.|+++++..+
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998876654444 7899999999998765 899999999999999999999865
Q ss_pred C
Q 000671 809 G 809 (1361)
Q Consensus 809 ~ 809 (1361)
.
T Consensus 230 p 230 (362)
T TIGR03258 230 P 230 (362)
T ss_pred c
Confidence 4
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=343.81 Aligned_cols=199 Identities=31% Similarity=0.417 Sum_probs=169.4
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 789999999964 3699999999999999999999999999999999999999999999876 38999
Q ss_pred ecCCcCC-CCCHHHHhhcCCCC-------CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 664 SQTSWIQ-SGSIRDNILYGKPM-------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 664 ~Q~~~i~-~~ti~eni~~g~~~-------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|+|.++ +.|++||+.++... +. ++.++.++.+++.... ..++.+||||||||++||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 148 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVALA 148 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHHHH
Confidence 9999876 46999999876321 11 2344555666654332 256678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||++.+|+++||||||++||+++.+.+.+.+.....+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 9999999999999999999999999988765554443 7899999999998765 89999999999999999988764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=360.55 Aligned_cols=201 Identities=32% Similarity=0.443 Sum_probs=173.6
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
++++|++++|+. .++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++| .++|+
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEE
Confidence 789999999964 3589999999999999999999999999999999999999999999987 49999
Q ss_pred ecCCcCCC-CCHHHHhhcCCCC-------C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 664 SQTSWIQS-GSIRDNILYGKPM-------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 664 ~Q~~~i~~-~ti~eni~~g~~~-------~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|++.++. .|++|||.|+... + .++..++++..++.+..+ .++.+|||||||||+||
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRvalA 148 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-----------RYPAQLSGGQKQRVALA 148 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHHHH
Confidence 99998765 6999999987431 2 234555666666643332 56779999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
||++.+|+++|||||||+||+..++.+.+.+.+...+ ++|+|+||||++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 149 rAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 149 RALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228 (353)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999998766654444 7899999999998765 8999999999999999999997653
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=353.76 Aligned_cols=204 Identities=25% Similarity=0.423 Sum_probs=172.6
Q ss_pred EEEEeeEEEeCCCC--CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997532 13699999999999999999999999999999999999999999998853
Q ss_pred -----------------------eEEEEecCC--cCCCCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCC
Q 000671 659 -----------------------SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFD 706 (1361)
Q Consensus 659 -----------------------~iayv~Q~~--~i~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~ 706 (1361)
.|||++|+| .++..||+|||.|+.. .++ ++..++++.++|..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---- 158 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY---- 158 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 279999986 4677899999998742 222 3456666666664322
Q ss_pred CCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-c
Q 000671 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-V 785 (1361)
Q Consensus 707 ~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~ 785 (1361)
...++.+||||||||++||||++.+|+++||||||++||+...+.+.+.+.....+|+|+|++|||++.+.. |
T Consensus 159 ------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 159 ------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred ------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 125678999999999999999999999999999999999999999887665544568999999999998755 8
Q ss_pred CeEEEEeCCeEEEecChHHHHhc
Q 000671 786 DRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 786 d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|+|++|++|++++.|+++++..+
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999998654
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=343.91 Aligned_cols=199 Identities=22% Similarity=0.352 Sum_probs=167.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~i 660 (1361)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468899999963 3599999999999999999999999999999999999999999998876 28
Q ss_pred EEEecCCcCCC-CCHHHHhhcCCCC-------------C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 661 AYVSQTSWIQS-GSIRDNILYGKPM-------------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 661 ayv~Q~~~i~~-~ti~eni~~g~~~-------------~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
+|++|++.++. .|++||+.++... + .++..++++.+++.. ..+.++.+|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-----------LADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-----------hhhCChhhCCH
Confidence 99999987765 5999999875321 0 112334444444432 23467789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
|||||++||||++.+|++++|||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999988766544478999999999999876 89999999999999999
Q ss_pred hHHHHh
Q 000671 802 YQELLL 807 (1361)
Q Consensus 802 ~~~l~~ 807 (1361)
++++..
T Consensus 227 ~~~~~~ 232 (236)
T cd03219 227 PDEVRN 232 (236)
T ss_pred HHHhcc
Confidence 888753
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=354.27 Aligned_cols=202 Identities=24% Similarity=0.391 Sum_probs=172.5
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eE
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~i 660 (1361)
..++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 46899999999964 4699999999999999999999999999999999999999999999976 49
Q ss_pred EEEecCCcCC-CCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 661 AYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 661 ayv~Q~~~i~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
||+||++.++ +.|++||+.|... .+. ++.+++++.+++....+ .+..+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-----------AKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-----------CchhhCCHHHHHHHHHHH
Confidence 9999998775 5799999985221 121 23445566665543322 455689999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|++++|++++|||||+|||+..++.+++.+.+...+|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999988765554568999999999999976 899999999999999999998643
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=351.90 Aligned_cols=205 Identities=21% Similarity=0.411 Sum_probs=171.8
Q ss_pred cEEEEeeEEEeCCCC--CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
.++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997432 24699999999999999999999999999999999999999999998876
Q ss_pred ----eEEEEecCC--cCCCCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ----~iayv~Q~~--~i~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.|||++|+| .+++.|++|||.|+.. .+. ++..++++.++|..+. ....+.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV----------MSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHH
Confidence 379999997 5677899999998632 232 2344555555554222 1256789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999998876555443 48999999999998865 8999999999999999999
Q ss_pred HHHhc
Q 000671 804 ELLLA 808 (1361)
Q Consensus 804 ~l~~~ 808 (1361)
++...
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 88653
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=362.27 Aligned_cols=202 Identities=26% Similarity=0.387 Sum_probs=174.5
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iay 662 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++| .|+|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4789999999964 3589999999999999999999999999999999999999999999877 3999
Q ss_pred EecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
++|++.++ +.|++|||.|+.. .+ .++.+++++.+++...++ .+..+|||||||||+||||+
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-----------~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHHHH
Confidence 99998876 5699999998643 22 234566777777754433 45678999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
+.+|+++||||||++||+..++.+.+.+.+...+ ++|+|+||||++.+.. ||+|++|++|++++.|+++++....
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999988766554443 8999999999998765 8999999999999999999987643
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=349.19 Aligned_cols=199 Identities=29% Similarity=0.460 Sum_probs=172.2
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48899999999632 3699999999999999999999999999999999999999999999877 38
Q ss_pred EEEecCC--cCCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 661 AYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 661 ayv~Q~~--~i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|++|+| .++..|++||+.|+.. .+ .+++.++++.+++.+..+ ....+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRD-----------KPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CChhhCCHHHHHHHHHH
Confidence 9999998 5778899999998632 22 235667777777765443 45568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999987666554458999999999999865 899999999999999998754
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=336.78 Aligned_cols=198 Identities=42% Similarity=0.792 Sum_probs=178.2
Q ss_pred EEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------
Q 000671 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------------- 658 (1361)
Q Consensus 596 ~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----------------- 658 (1361)
.+.|++|+|+.+ .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 567899999854 4699999999999999999999999999999999999999999998854
Q ss_pred eEEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 000671 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 659 ~iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1361)
.++|++|+|.+++.|++||+.++.+.+.++..++++++++.+.++.+|.|++|.++.++.+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 38999999998889999999987666666778889999998888889999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHH-HHHHh-cCCcEEEEEccCchHHhhcCeEEEEeCCe
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNE-CVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1361)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~-~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1361)
+++||||||++||+.+.+.+.+. ++... .+++|+|++||+.+.++.+|++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988773 44443 34789999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=338.02 Aligned_cols=192 Identities=30% Similarity=0.416 Sum_probs=163.3
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 468999999964 3699999999999999999999999999999999999999999999876 38999
Q ss_pred ecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 664 SQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 664 ~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+|++.++ +.|++||+.++.. .+ .++..++++.+++.+.++ ....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHHHh
Confidence 9998765 5799999987532 12 234556666666654433 456789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999876655444 48999999999998866 8999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=335.01 Aligned_cols=188 Identities=34% Similarity=0.503 Sum_probs=162.4
Q ss_pred EEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEEEecC
Q 000671 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYVSQT 666 (1361)
Q Consensus 597 ~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----------~iayv~Q~ 666 (1361)
++|++++|+.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|+
T Consensus 2 ~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 67899999642 4689999999999999999999999999999999999999999999887 48999999
Q ss_pred C--cCCCCCHHHHhhcCCC---CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 000671 667 S--WIQSGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1361)
Q Consensus 667 ~--~i~~~ti~eni~~g~~---~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1361)
| .+++.|++||+.++.+ .+.++..++++.+++.+.++ ....+||||||||++||||++.+|+++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-----------RHPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-----------CCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 7 4567899999988643 22356777888888765433 455689999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE
Q 000671 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1361)
Q Consensus 742 lLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1361)
||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999887665544568999999999999875 8999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=338.84 Aligned_cols=197 Identities=31% Similarity=0.422 Sum_probs=166.6
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEec
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------~iayv~Q 665 (1361)
++++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999997421 14699999999999999999999999999999999999999999999877 4899999
Q ss_pred CCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 000671 666 TSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1361)
Q Consensus 666 ~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1361)
++.++. .|++||+.++.. .+ .++..+.++.+++.+.++ .+..+||||||||++||||++++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHHHHHcC
Confidence 988765 799999987532 11 234566777777754443 45578999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEe--CCeEEEecCh
Q 000671 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLE--GGQITQSGNY 802 (1361)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 802 (1361)
|+++||||||++||+.+.+.+++.+.+... .++|+|++||+++.+.. ||++++|+ +|++++.++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999877655433 48999999999998765 89999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=357.97 Aligned_cols=203 Identities=27% Similarity=0.374 Sum_probs=172.3
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
++++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999997321 34699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEecCCcCCC-CCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 -~iayv~Q~~~i~~-~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
.|+|++|++.++. .|++||+.++.. .+. ++..+.++..++.+..+ .++.+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-----------RYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 3999999988764 799999987532 222 23445566655543322 466789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999877665444 38999999999999876 89999999999999999999876
Q ss_pred c
Q 000671 808 A 808 (1361)
Q Consensus 808 ~ 808 (1361)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=338.31 Aligned_cols=190 Identities=24% Similarity=0.411 Sum_probs=161.8
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
++++|++++|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6889999999643 23699999999999999999999999999999999999999999998876
Q ss_pred eEEEEecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.++|++|++.++ +.|++||+.++.. .+ +++..++++.+++.+..+ ....+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-----------ALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 389999998776 4699999987521 11 245566777777754433 4556899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeE
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1361)
|||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999987665544458999999999999876 899999999975
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=340.13 Aligned_cols=197 Identities=31% Similarity=0.442 Sum_probs=166.3
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCc-----cCCCcEEEEcC-----------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI-----PKISGTVNLYG----------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~-----~~~~G~v~~~g----------- 658 (1361)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 468999999964 36999999999999999999999999999999999999 99999998876
Q ss_pred ----eEEEEecCCcCCCCCHHHHhhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 ----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ----~iayv~Q~~~i~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|++.+++.|++||+.++.. . . +++..++++.+++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 3899999998778899999987532 1 1 2345566666666544332110 5789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
|++||||++.+|+++||||||++||+.+.+.+++.+.+...+ +|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999998766554444 899999999998765 89999999999999988654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=338.57 Aligned_cols=197 Identities=21% Similarity=0.367 Sum_probs=168.4
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 478999999964 3699999999999999999999999999999999999999999999876 3899
Q ss_pred EecCCcCCC-CCHHHHhhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~~~i~~-~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
++|++.++. .|++||+.++. ..+ .++.++.++.+++.+..+ .+..+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-----------RLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 999987654 69999998742 121 234566777777754433 45678999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
+.+|+++||||||++||+++.+.+.+.+.....+ ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999988766655444 8899999999999876 899999999999999887664
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=341.98 Aligned_cols=198 Identities=31% Similarity=0.439 Sum_probs=167.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
++++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 678999999962 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEecCCcCC-CCCHHHHhhcCCC---------------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 659 SIAYVSQTSWIQ-SGSIRDNILYGKP---------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 659 ~iayv~Q~~~i~-~~ti~eni~~g~~---------------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
.++|++|++.++ +.|++||+.++.. .+.++..++++.+++...++ .++.+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCH
Confidence 289999998766 4799999987531 01234455666666654332 56779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999998876655433 37899999999999865 8999999999999999
Q ss_pred ChHHH
Q 000671 801 NYQEL 805 (1361)
Q Consensus 801 ~~~~l 805 (1361)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 98886
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=341.86 Aligned_cols=199 Identities=31% Similarity=0.425 Sum_probs=167.3
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
++++|++++|+.+ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4689999999642 4699999999999999999999999999999999999999999998876
Q ss_pred eEEEEecCCcCCC-CCHHHHhhcCCC------------C---CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 659 SIAYVSQTSWIQS-GSIRDNILYGKP------------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 659 ~iayv~Q~~~i~~-~ti~eni~~g~~------------~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
.++|++|++.++. .|++||+.++.. . +.++..++++.+++... ...++.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 3899999987654 799999986531 1 12234445555555432 2356789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999876655443 48999999999999885 8999999999999999
Q ss_pred ChHHHH
Q 000671 801 NYQELL 806 (1361)
Q Consensus 801 ~~~~l~ 806 (1361)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 988863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=339.34 Aligned_cols=202 Identities=25% Similarity=0.377 Sum_probs=173.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4789999999963 3689999999999999999999999999999999999999999999876 38
Q ss_pred EEEecCCcCCCCCHHHHhhcCCCC---CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 000671 661 AYVSQTSWIQSGSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1361)
Q Consensus 661 ayv~Q~~~i~~~ti~eni~~g~~~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1361)
+|++|++.+++.|++||+.++... ..++..+.++.+++..++. .+.+.+||||||||++||||++.+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA----------TRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh----------hCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999988888999999876432 2345566777777643321 246778999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999999999999999998876655444 48999999999999875 899999999999999999988754
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=345.99 Aligned_cols=203 Identities=24% Similarity=0.422 Sum_probs=175.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|+++.|+.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| .+
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 58999999999642 34699999999999999999999999999999999999999999999887 38
Q ss_pred EEEecCC--cCCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 661 AYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 661 ayv~Q~~--~i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|++|+| .+++.|++|||.++.. .. .++..++++.++|...++ .+..+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLN-----------REPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHH
Confidence 9999998 4677899999988632 22 234566777777765554 45568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
||++.+|+++||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999998766654444 8999999999999888999999999999999999888654
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=333.18 Aligned_cols=192 Identities=22% Similarity=0.347 Sum_probs=167.0
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 468999999963 4699999999999999999999999999999999999999999999977 38999
Q ss_pred ecCCcCC-CCCHHHHhhcCC---CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCC
Q 000671 664 SQTSWIQ-SGSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1361)
Q Consensus 664 ~Q~~~i~-~~ti~eni~~g~---~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1361)
+|++.++ +.|++||+.++. ..++++.+++++..++.+.++ .++.+||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9998765 679999997753 234566777788887765443 4567899999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999887665544468999999999999875 8999999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=345.32 Aligned_cols=200 Identities=26% Similarity=0.447 Sum_probs=171.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~i 660 (1361)
++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 6789999999632 3599999999999999999999999999999999999999999998876 28
Q ss_pred EEEecCCc--CCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 661 AYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 661 ayv~Q~~~--i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|++|+|. +++.|++|||.++.. .+ .++.+++++.+++....+ ..+.+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-----------RSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CCcccCCHHHHHHHHHH
Confidence 99999985 567899999988632 22 234556666666654433 45678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHh
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||++.+|+++||||||++||+.+...+++.+.....+|+|+|++||+++.++.||+|++|++|++++.|+.+++..
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999988776554446899999999999998899999999999999999988764
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=357.94 Aligned_cols=205 Identities=26% Similarity=0.365 Sum_probs=175.3
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eE
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SI 660 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~i 660 (1361)
...++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .|
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 346999999999964 3589999999999999999999999999999999999999999999987 38
Q ss_pred EEEecCCcCCC-CCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 661 AYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 661 ayv~Q~~~i~~-~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
||++|++-++. .||+|||.|+.. .++ ++..++++..++....+ .++.+|||||||||+|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK-----------RKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHH
Confidence 99999988764 699999998742 222 34455666666654332 566799999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcCc
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1361)
|++.+|+++|||||||+||+..++.+.+.+.+... .|.|+|+||||.+.+.. +|+|++|++|++++.|+++++..+..
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 99999999999999999999999998876655443 48999999999998655 89999999999999999999986543
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=336.82 Aligned_cols=191 Identities=28% Similarity=0.417 Sum_probs=160.6
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997421 14699999999999999999999999999999999999999999998765
Q ss_pred --eEEEEecCCcCCC-CCHHHHhhcCCCC---C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 659 --SIAYVSQTSWIQS-GSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 659 --~iayv~Q~~~i~~-~ti~eni~~g~~~---~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
.++|++|++.++. .|++||+.++..+ + ++++.++++.+++.+.++ .++.+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-----------HYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------cChhhcCHHHHHHH
Confidence 3899999987765 5999999885321 1 234556666666654332 55678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeE
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1361)
+||||++.+|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999998876655444 48999999999998877899999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=338.09 Aligned_cols=202 Identities=26% Similarity=0.406 Sum_probs=169.9
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
++++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 67899999997431 12699999999999999999999999999999999999999999998875
Q ss_pred -eEEEEecCCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 -~iayv~Q~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
.++|++|++.++. .|++||+.++.. .+ .++..+.++..++.+.++ ....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence 3899999998775 699999987522 22 223455566666643332 456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999988766554444 8999999999999876 89999999999999999887753
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=347.53 Aligned_cols=204 Identities=24% Similarity=0.415 Sum_probs=171.5
Q ss_pred cEEEEeeEEEeCCCC--CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
.++++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997421 14699999999999999999999999999999999999999999998876
Q ss_pred ----eEEEEecCC--cCCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ----~iayv~Q~~--~i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|+| .+++.|++|||.++.. .. .++.+++++.+++..++. ..+..+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI----------SKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh----------hCCcccCCHHHH
Confidence 279999997 4667899999987531 22 224456666666642221 256779999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999887665444468999999999999865 89999999999999999998
Q ss_pred HHh
Q 000671 805 LLL 807 (1361)
Q Consensus 805 l~~ 807 (1361)
+..
T Consensus 232 ~~~ 234 (287)
T PRK13641 232 IFS 234 (287)
T ss_pred Hhc
Confidence 764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=335.83 Aligned_cols=198 Identities=30% Similarity=0.471 Sum_probs=165.6
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~i 660 (1361)
++++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 468999999964 3689999999999999999999999999999999999999999998876 28
Q ss_pred EEEecCCcCCC-CCHHHHhhcCCCCC-----HHHHHHHHHHh-cchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000671 661 AYVSQTSWIQS-GSIRDNILYGKPMD-----KARYDKAIKAC-ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1361)
Q Consensus 661 ayv~Q~~~i~~-~ti~eni~~g~~~~-----~~~~~~~~~~~-~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1361)
+|++|++.++. .|++||+.++.... .++..++++.+ .+.. ....++.+||||||||++||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKE-----------RRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhh-----------hhhCchhhCCHHHHHHHHHHHH
Confidence 99999987765 59999998764321 12233344433 1221 1235678999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHH
Q 000671 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 806 (1361)
++.+|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999999999999999887665544468999999999998766 8999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=313.70 Aligned_cols=435 Identities=15% Similarity=0.181 Sum_probs=294.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 342 SRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGAL 421 (1361)
Q Consensus 342 ~~~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~plqi~va~~~L~~~lG~~~l 421 (1361)
.+..-.++|..++..|..--+ ..-.+.+++.+..-++.|+..|.-.+..+..+-.+.+-+..++..|+.+-+...+
T Consensus 76 gq~~I~klr~~~~~kil~tpl----erier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~ 151 (546)
T COG4615 76 GQHFIYKLRSEFIKKILDTPL----ERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFL 151 (546)
T ss_pred HHHHHHHHHHHHHHHHhcCHH----HHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334444666666655543222 2122345678899999999999866666666555555555666667666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHH-HHHHHHHHHHHHHHHHHH
Q 000671 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE--KFKS-LIESRREKEFKWLSEAQL 498 (1361)
Q Consensus 422 ~gl~v~~l~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~--~f~~-~i~~~R~~El~~l~~~~~ 498 (1361)
..++.+++.+..+....+...++..+..+..|+-.+..+.++.|-|.+|+..=.. .+.+ .+...++.|- ...+
T Consensus 152 l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~----~~~~ 227 (546)
T COG4615 152 LTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH----HIIR 227 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh----hhhh
Confidence 6666666766777776666677777777888999999999999999998875322 1222 2222333221 1111
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000671 499 RKAYG-TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE 577 (1361)
Q Consensus 499 ~~~~~-~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e 577 (1361)
...+. ....|..-.+.+++-...|......-=+...+.|.....-.++.|+.+....++.+.+|.++++||.++=..|+
T Consensus 228 ~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~ 307 (546)
T COG4615 228 ANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPY 307 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCc
Confidence 12221 12233322222222211111111000112234443344555799999999999999999999999999854443
Q ss_pred CCCchhhhccccCCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEc
Q 000671 578 LNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY 657 (1361)
Q Consensus 578 ~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~ 657 (1361)
... ..+....++-..++++|+.|+|.+.. .-+..||++|++||++-|+|.||||||||++.+.|+++|++|+|.++
T Consensus 308 ~a~--~~~~q~~p~~~~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ld 383 (546)
T COG4615 308 KAD--FPRPQAFPDWKTLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLD 383 (546)
T ss_pred ccc--CCCCCcCCcccceeeeeeeeccCccc--ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeEC
Confidence 221 11111112345799999999998653 67899999999999999999999999999999999999999999999
Q ss_pred Ce-------------EEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 658 GS-------------IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 658 g~-------------iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
|+ ++-|+-|-|+|+.++ -+.. -.++..++.++..++....+ +.+|..+ ...||-|
T Consensus 384 g~pV~~e~ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~kts-l~d~~fs-----~~kLStG 452 (546)
T COG4615 384 GKPVSAEQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKTS-LNDGRFS-----NLKLSTG 452 (546)
T ss_pred CccCCCCCHHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----ccccccc
Confidence 84 222333333333221 1122 34566666777666654433 3344332 3579999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhhcCeEEEEeCCeEEEe
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1361)
||.|+++--|+..+.|||++||=-+.-||+-++..++..+-.. .+|||++.+|||-.+...|||++.|++|+++|.
T Consensus 453 QkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 453 QKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred hHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 9999999999999999999999999999999999998776443 469999999999999999999999999999864
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=337.85 Aligned_cols=197 Identities=24% Similarity=0.350 Sum_probs=166.2
Q ss_pred cEEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
.++++|++++|+.+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 14699999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEecCCcCCC-CCHHHHhhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 ---SIAYVSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 ---~iayv~Q~~~i~~-~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.++|++|++.++. .|++||+.++. ..+ +++..++++.+++.+.+ .+++.+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA-----------NHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHH
Confidence 3899999987765 59999998742 122 23455666666664332 25667899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeEEEecC
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1361)
++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999998876655433 5899999999999998889999999999998765
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=329.50 Aligned_cols=189 Identities=25% Similarity=0.471 Sum_probs=164.2
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ 659 (1361)
+.++++|++++|+.. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 569999999999753 23699999999999999999999999999999999999999999999876 4
Q ss_pred EEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCC
Q 000671 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1361)
Q Consensus 660 iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1361)
|+|++|+|.+++.|++||+.+...++.++..+.++ +++++.+||||||||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999988899999998755444333322222 235778999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecC
Q 000671 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1361)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1361)
++||||||++||+...+.+.+.+... .+++|+|++||+++.+..+|++++|++|++.+.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREE-FTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999988765544 46899999999999988899999999999998775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=358.62 Aligned_cols=201 Identities=24% Similarity=0.433 Sum_probs=174.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++| ++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4789999999974 4699999999999999999999999999999999999999999999987 39
Q ss_pred EEEecCCcC-CCCCHHHHhhcCCC-----C------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 661 AYVSQTSWI-QSGSIRDNILYGKP-----M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 661 ayv~Q~~~i-~~~ti~eni~~g~~-----~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
||++|++.+ ++.|++||+.++.. + +.++.+++++..++.+..+ ....+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----------~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----------RPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 999999876 68899999988641 1 1335566777777754332 45678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
+|||||+++|+++||||||++||+..+..+.+.+.+...+++|+|++||+++.+.+ ||++++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999887665544468999999999999865 89999999999999999999875
Q ss_pred c
Q 000671 808 A 808 (1361)
Q Consensus 808 ~ 808 (1361)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=346.13 Aligned_cols=199 Identities=29% Similarity=0.388 Sum_probs=167.9
Q ss_pred EEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------
Q 000671 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------------- 658 (1361)
Q Consensus 596 ~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----------------- 658 (1361)
.++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 34566666653 3589999999999999999999999999999999999999999998865
Q ss_pred eEEEEecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.++|++|++.++ +.|++||+.++.. .+ .++..++++.+++.+.++ ....+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEH-----------KYPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CCcccCCHHHHHHHHH
Confidence 389999999876 5799999987521 22 234566777777765444 4456899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999998876655433 48999999999998765 899999999999999999998754
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=334.65 Aligned_cols=195 Identities=21% Similarity=0.357 Sum_probs=165.0
Q ss_pred EEEEeeEEEeCCCCC-CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEE
Q 000671 595 VKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~ia 661 (1361)
++++|++++|+.... .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 678999999975311 2699999999999999999999999999999999999999999999876 389
Q ss_pred EEecCCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000671 662 YVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1361)
Q Consensus 662 yv~Q~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1361)
|++|++.++. .|++||+.+... .+ .++..++++..++.+.++ +++.+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHHH
Confidence 9999997766 599999976321 11 234556677776654333 5677899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999887665554568999999999998875 8999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=334.12 Aligned_cols=198 Identities=24% Similarity=0.433 Sum_probs=168.1
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|+++.|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4689999999642 24699999999999999999999999999999999999999999999876 3899
Q ss_pred EecCCcCC-CCCHHHHhhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQTSWIQ-SGSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~~~i~-~~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
++|++.++ +.|++||+.++. ... .++.+++++.+++.+.++ ....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-----------KRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------ChhhhCCHHHHHHHHHHHHH
Confidence 99998776 679999998642 122 234566777777754332 45678999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
+.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEV-RKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999988765543 346899999999999876 899999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=349.00 Aligned_cols=201 Identities=26% Similarity=0.396 Sum_probs=171.0
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eE
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~i 660 (1361)
..++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 46899999999964 3599999999999999999999999999999999999999999999876 49
Q ss_pred EEEecCCcCC-CCCHHHHhhcC-C--CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 661 AYVSQTSWIQ-SGSIRDNILYG-K--PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 661 ayv~Q~~~i~-~~ti~eni~~g-~--~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
||+||++.++ +.|++||+.+. . ..+. ++.+++++.+++.+.. ..+..+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCchhhCCHHHHHHHHHHH
Confidence 9999998776 57999999742 1 1222 2334455555554332 2456789999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
|++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999987766554568999999999999876 89999999999999999998864
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=345.78 Aligned_cols=202 Identities=26% Similarity=0.449 Sum_probs=173.8
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
.++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSDG--THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 58999999999632 4699999999999999999999999999999999999999999999876
Q ss_pred eEEEEecCC--cCCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 659 SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 ~iayv~Q~~--~i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
.++|++|+| .+++.|++||+.++.. +. .++..++++.+++....+ .++.+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHH
Confidence 289999998 4678899999987521 22 234566677777754332 567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999988766554443 8999999999999875 99999999999999999999865
Q ss_pred c
Q 000671 808 A 808 (1361)
Q Consensus 808 ~ 808 (1361)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=353.06 Aligned_cols=202 Identities=26% Similarity=0.406 Sum_probs=172.2
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eE
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~i 660 (1361)
..|+++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 40 ~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 40 VAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred eeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 46999999999974 3599999999999999999999999999999999999999999999987 39
Q ss_pred EEEecCCcCC-CCCHHHHhhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 661 AYVSQTSWIQ-SGSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 661 ayv~Q~~~i~-~~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
||+||++.++ +.|++||+.+.. ..+ .++.+++++.++|.+.. ..+..+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-----------~~~~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DARVSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------CCChhhCCHHHHHHHHHHH
Confidence 9999998774 679999997521 112 12334455555554322 2556789999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|++++|+++||||||+|||+.+.+.+++.+.+...+|+|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999988776555568999999999999876 899999999999999999998643
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=337.30 Aligned_cols=200 Identities=23% Similarity=0.384 Sum_probs=169.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 678999999963 3699999999999999999999999999999999999999999999876 3899
Q ss_pred EecCCcC-CCCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQTSWI-QSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~~~i-~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
++|++.+ ++.|++||+.++.. ... ++..+.++..++... ...++.+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999876 57899999986532 222 233444555555432 2356789999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
+.+|+++||||||++||+.+.+.+.+.+.+... +|+|+|++||+++.+..||++++|++|++++.|+++++..+
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999876655443 58999999999999888999999999999999999888654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=341.21 Aligned_cols=205 Identities=24% Similarity=0.394 Sum_probs=172.1
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g--------- 658 (1361)
..++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 46899999999964 359999999999999999999999999999999999864 5899998865
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHH
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQ 724 (1361)
.++|++|++.+++.|++||+.++.. . . .++.++.++.+++.+.+.. ..++.+.+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHH
Confidence 3899999998888899999987521 1 1 2345556666666433221 2346778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChH
Q 000671 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1361)
|||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL-KARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988765544 457899999999999865 8999999999999999998
Q ss_pred HHHhc
Q 000671 804 ELLLA 808 (1361)
Q Consensus 804 ~l~~~ 808 (1361)
++...
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 88643
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=339.91 Aligned_cols=204 Identities=25% Similarity=0.352 Sum_probs=173.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc---CCCcEEEEcC------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG------------ 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~---~~~G~v~~~g------------ 658 (1361)
.|+++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999963 368999999999999999999999999999999999974 6899999876
Q ss_pred -eEEEEecCCcCCCCCHHHHhhcCCCC---------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 659 -SIAYVSQTSWIQSGSIRDNILYGKPM---------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 659 -~iayv~Q~~~i~~~ti~eni~~g~~~---------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
.++|++|++.+++.|++||+.++... .+++..++++.+++.+.+..+ ..+++.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHH
Confidence 38999999998889999999875211 122456677777775544321 2356789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
+||||++++|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999987755443 458999999999998865 89999999999999999998864
Q ss_pred c
Q 000671 808 A 808 (1361)
Q Consensus 808 ~ 808 (1361)
.
T Consensus 231 ~ 231 (246)
T PRK14269 231 N 231 (246)
T ss_pred C
Confidence 3
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=338.80 Aligned_cols=197 Identities=28% Similarity=0.326 Sum_probs=169.5
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEe
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVS 664 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------~iayv~ 664 (1361)
..++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 46999999999964 3699999999999999999999999999999999999999999999876 489999
Q ss_pred cCCcCCC-CCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 000671 665 QTSWIQS-GSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1361)
Q Consensus 665 Q~~~i~~-~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ill 742 (1361)
|++.++. .|++||+.++.. ..+++..++++.+++...++ .++.+||||||||++||||++.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9987765 799999988642 12345667777777754432 5667999999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChH
Q 000671 743 FDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 743 LDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1361)
|||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999998876655433 47999999999999865 8999999999999887654
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=345.25 Aligned_cols=201 Identities=26% Similarity=0.439 Sum_probs=177.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~ia 661 (1361)
.++++|++..|.. +..+|+|+||+|++||+++++||||||||||+++|+|+.+|++|+|.+.| +||
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 4788999999973 24699999999999999999999999999999999999999999999988 499
Q ss_pred EEecCCcC-CCCCHHHHhhcC-----CC--CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000671 662 YVSQTSWI-QSGSIRDNILYG-----KP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1361)
Q Consensus 662 yv~Q~~~i-~~~ti~eni~~g-----~~--~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1361)
|+||+|.+ .+.|++||+.|- .+ .++++.+++++..+|.++. ..+..+||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 99999875 567999999873 22 3356788899988887632 25678899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCC-cEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~-~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
|.++|++++|||||+||||..+..+++.+.....++ +||+++||.++.+.. ||+|++|++|++++.|+.+++..
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999988776666666 799999999999887 89999999999999999988754
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=334.31 Aligned_cols=205 Identities=29% Similarity=0.439 Sum_probs=176.1
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------ 658 (1361)
..+.++++|++++|+.....++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 34679999999999753334699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEecCCcCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHcc
Q 000671 659 -SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1361)
Q Consensus 659 -~iayv~Q~~~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~ 736 (1361)
.++|++|++.+++.|++||+.++.. .....+.+..+...+.+.++.++.|..+.+++++.+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 3899999998888999999998643 22233334444556677788887776677888899999999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeE
Q 000671 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1361)
Q Consensus 737 ~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1361)
+|+++||||||++||+++.+.+.+.+.. ..+++|+|++||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYD-WPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH-HcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999998876554 3456899999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=333.41 Aligned_cols=189 Identities=37% Similarity=0.572 Sum_probs=160.8
Q ss_pred EEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEecCCc
Q 000671 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQTSW 668 (1361)
Q Consensus 597 ~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------~iayv~Q~~~ 668 (1361)
++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|++.
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 6789999964 3589999999999999999999999999999999999999999999987 3999999986
Q ss_pred C---CCCCHHHHhhcCCCC-----------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 669 I---QSGSIRDNILYGKPM-----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 669 i---~~~ti~eni~~g~~~-----------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
+ ++.|++||+.++... .+++.+++++.+++.+.++ .+..+||||||||++||||+
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVLLARAL 147 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHHH
Confidence 5 457999999875321 1235667777777765443 35678999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
+.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. ||++++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999887666544478999999999999876 8999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=336.84 Aligned_cols=199 Identities=23% Similarity=0.401 Sum_probs=167.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~i 660 (1361)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 468999999964 3599999999999999999999999999999999999999999998875 28
Q ss_pred EEEecCCcCCC-CCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 661 AYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 661 ayv~Q~~~i~~-~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
+|++|++.++. .|++||+.++.+ ... ++.++.++..++.+.. ...+.+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLR-----------KSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHHHH
Confidence 99999987765 599999987532 111 2334555555554322 3567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
|++.+|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999887665544468999999999988765 89999999999999999888753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=332.85 Aligned_cols=192 Identities=30% Similarity=0.430 Sum_probs=163.2
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
++++|++++|+. .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999999974 3689999999999999999999999999999999999999999999876 38999
Q ss_pred ecCCcCC-CCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 664 SQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 664 ~Q~~~i~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+|++.++ +.|++||+.++.. ... ++..++++..++.+.++ ..+.+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-----------RKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 9999876 5699999987521 222 23445566666654333 456789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
.+|++++|||||++||+++.+.+.+.+..... +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999876655444 48999999999998876 8999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=339.50 Aligned_cols=205 Identities=28% Similarity=0.392 Sum_probs=171.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g--------- 658 (1361)
..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 46899999999964 3589999999999999999999999999999999999987 489998765
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHH
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~----~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQ 724 (1361)
.++|++|++.+++.|++|||.++.. .+ .++..++++.+++...+.. ....++.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD-------KLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHH-------HHhCCcccCCHHH
Confidence 3899999998888999999988632 12 1234455565555322211 1235678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChH
Q 000671 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1361)
|||++||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988765544 457899999999999865 8999999999999999999
Q ss_pred HHHhc
Q 000671 804 ELLLA 808 (1361)
Q Consensus 804 ~l~~~ 808 (1361)
++..+
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 88643
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=337.86 Aligned_cols=203 Identities=29% Similarity=0.416 Sum_probs=170.3
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC-----CcEEEEcC-----------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG----------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~-----~G~v~~~g----------- 658 (1361)
++++|++++|+. .++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 689999999974 35899999999999999999999999999999999999998 99998865
Q ss_pred ----eEEEEecCCcCCCCCHHHHhhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 ----SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ----~iayv~Q~~~i~~~ti~eni~~g~~----~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|+||++.+++.|++||+.++.. .+ .++..++++..++.++++ .....++.+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 3899999998888999999987521 11 123455666666653221 1133567899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
|++||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999988755443 345899999999998865 899999999999999999888
Q ss_pred Hhc
Q 000671 806 LLA 808 (1361)
Q Consensus 806 ~~~ 808 (1361)
...
T Consensus 231 ~~~ 233 (247)
T TIGR00972 231 FTN 233 (247)
T ss_pred HhC
Confidence 643
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=311.12 Aligned_cols=201 Identities=25% Similarity=0.347 Sum_probs=174.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
+++++++.+|++. ..+++|+||++++||+++|.|+||+||||+|+.|.+++.|++|.|.++| +||.
T Consensus 2 l~v~~l~K~y~~~--v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH--HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 5778899999762 4589999999999999999999999999999999999999999999987 5888
Q ss_pred EecC-CcCCCCCHHHHhhcCCC-------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQT-SWIQSGSIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~-~~i~~~ti~eni~~g~~-------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
++.+ +.....|+||||.|... .-+.+..++.+..++.+-++ .+..++|-||||||+||||+
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHHH
Confidence 8855 44557899999986321 22567778888888877665 57788999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
.+||++++||||+||||..+.+.+.+.+......|+++|++||.++.++. ||+|+++++|+++..|+.+++.++
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999998776655555679999999999999985 999999999999999999998754
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=342.77 Aligned_cols=204 Identities=25% Similarity=0.393 Sum_probs=174.4
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48899999999754334699999999999999999999999999999999999999999999876 38
Q ss_pred EEEecCCc--CCCCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 661 ayv~Q~~~--i~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|++|+|. +++.|+.|||.++.. ... ++++++++.+++....+ .++..||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999983 677899999987521 222 34456667777654332 45678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999988766544444 8999999999999888999999999999999999988754
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=338.85 Aligned_cols=202 Identities=28% Similarity=0.397 Sum_probs=168.7
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999752 3589999999999999999999999999999999999999999999876 389
Q ss_pred EEecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000671 662 YVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1361)
Q Consensus 662 yv~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1361)
|++|+|.++ ..|++||+.++.. .+ .++..++++..++... ....+++.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA---------EFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------HHHhcChhhCCHHHHHHHHHHHH
Confidence 999999876 4799999987532 22 2234455555555420 01235678999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
++.+|++++|||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999998876665444 38999999999998765 89999999999999999888754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=344.62 Aligned_cols=205 Identities=20% Similarity=0.353 Sum_probs=170.6
Q ss_pred cEEEEeeEEEeCCCC--CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
.++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999997432 13699999999999999999999999999999999999999999998876
Q ss_pred ----eEEEEecCC--cCCCCCHHHHhhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ----~iayv~Q~~--~i~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.|+|++|+| .+++.|++||+.++.. .+.+ +.+++++..++..+. ...++.+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL----------FEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHH
Confidence 289999997 5677899999987531 2222 234445555553221 1356788999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999887765544458999999999999865 89999999999999999988
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+...
T Consensus 232 ~~~~ 235 (280)
T PRK13649 232 IFQD 235 (280)
T ss_pred HhcC
Confidence 7653
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=343.67 Aligned_cols=204 Identities=22% Similarity=0.350 Sum_probs=174.8
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCC---cEEEEcC-----------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS---GTVNLYG----------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~---G~v~~~g----------- 658 (1361)
..++++|+++.|+.. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 468999999999643 2469999999999999999999999999999999999999988 8998876
Q ss_pred --eEEEEecCCc--CCCCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 --SIAYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 --~iayv~Q~~~--i~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.+||++|+|. +++.|++|||.|+.. .+. ++..++++.+++.+..+ ....+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-----------SEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHH
Confidence 3899999984 568899999988632 222 34566777777765443 4567999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHH
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1361)
++||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999876655444 389999999999998779999999999999999998886
Q ss_pred hc
Q 000671 807 LA 808 (1361)
Q Consensus 807 ~~ 808 (1361)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 53
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=349.29 Aligned_cols=207 Identities=24% Similarity=0.374 Sum_probs=173.3
Q ss_pred CcEEEEeeEEEeCCCC----------CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----
Q 000671 593 RSVKIQEGNFSWDPEL----------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~----------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---- 658 (1361)
..++++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 4689999999996421 24689999999999999999999999999999999999999999998876
Q ss_pred ------------eEEEEecCCc--C-CCCCHHHHhhcCC-----CCCH----HHHHHHHHHhcchHHHhcCCCCCCcccc
Q 000671 659 ------------SIAYVSQTSW--I-QSGSIRDNILYGK-----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIG 714 (1361)
Q Consensus 659 ------------~iayv~Q~~~--i-~~~ti~eni~~g~-----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig 714 (1361)
+|+||+|+|. + ...||.|||.++. ..++ ++..+.++.+++.++. ..
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~----------~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL----------IN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------hc
Confidence 4999999983 4 4679999997531 1332 2344566666664322 23
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEe
Q 000671 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLE 792 (1361)
Q Consensus 715 ~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~ 792 (1361)
..+.+|||||||||+||||++.+|+++|+||||+|||+.+++.+.+.+..... .+.|+|+||||++.+.. ||+|++|+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 56789999999999999999999999999999999999999999876655443 38899999999999976 89999999
Q ss_pred CCeEEEecChHHHHhcC
Q 000671 793 GGQITQSGNYQELLLAG 809 (1361)
Q Consensus 793 ~G~i~~~g~~~~l~~~~ 809 (1361)
+|+|++.|+.+++..+.
T Consensus 237 ~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 237 LGHAVELGTYDEVYHNP 253 (331)
T ss_pred CCEEEEEcCHHHHHcCC
Confidence 99999999999998653
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=345.30 Aligned_cols=206 Identities=23% Similarity=0.378 Sum_probs=169.2
Q ss_pred CcEEEEeeEEEeCCCC--CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000671 593 RSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------ 658 (1361)
+.++++|++++|+.+. ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4689999999997532 13599999999999999999999999999999999999999999998765
Q ss_pred ------eEEEEecCCc--CCCCCHHHHhhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 659 ------SIAYVSQTSW--IQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 659 ------~iayv~Q~~~--i~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
.|+|++|+|. +++.|++||+.|+.. ...+ +..+.++.+++..+. ....+.+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~----------~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDY----------VKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hcCChhhCCHH
Confidence 3899999984 567799999988632 2221 223344444442111 23567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
||||++||||++.+|+++||||||++||+.+.+.+++.+..... .++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999998876654433 48999999999998765 89999999999999999
Q ss_pred hHHHHhc
Q 000671 802 YQELLLA 808 (1361)
Q Consensus 802 ~~~l~~~ 808 (1361)
++++.+.
T Consensus 235 ~~~~~~~ 241 (289)
T PRK13645 235 PFEIFSN 241 (289)
T ss_pred HHHHhcC
Confidence 9887643
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=341.64 Aligned_cols=204 Identities=25% Similarity=0.412 Sum_probs=173.7
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ 659 (1361)
..++++|++++|+.+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 6 ~~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 358999999999632 24699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEecCC--cCCCCCHHHHhhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 660 IAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 660 iayv~Q~~--~i~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
++|++|+| .+++.|++||+.++.. ++.+ +..++++..++...++ .++.+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-----------KEPQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CCcccCCHHHHHHHHH
Confidence 89999998 4567899999987531 2322 3455667777765443 4567999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|||++.+|+++||||||++||+.+.+.+++.+.+...+ ++|+|++||+++.+..||++++|++|++.+.|+.+++...
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999998776654444 5899999999998878999999999999999998887653
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=335.61 Aligned_cols=200 Identities=26% Similarity=0.421 Sum_probs=169.6
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------~ 659 (1361)
++++|++++|++ .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 678999999963 3689999999999999999999999999999999999999999998876 3
Q ss_pred EEEEecCCcCC-CCCHHHHhhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 660 IAYVSQTSWIQ-SGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 660 iayv~Q~~~i~-~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
++|++|++.++ ..|++||+.++. ..+. ++..++++..++.+.++ .++.+||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-----------HYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-----------cChhhcCHHHHHHHHH
Confidence 89999998766 579999998753 1222 23445556555543332 4567899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|||++.+|++++|||||++||+++.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999887655444468999999999999876 899999999999999999887643
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=328.80 Aligned_cols=206 Identities=27% Similarity=0.413 Sum_probs=175.0
Q ss_pred cEEEEeeEEEeCCCC---------------------CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCc
Q 000671 594 SVKIQEGNFSWDPEL---------------------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~---------------------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G 652 (1361)
.|+++|++.-+..++ ...-++|+||+|+.||+.+|.|-+|||||||++++.++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 577777777665431 11247899999999999999999999999999999999999999
Q ss_pred EEEEcC-----------------eEEEEecCC-cCCCCCHHHHhhcCCCCC-------HHHHHHHHHHhcchHHHhcCCC
Q 000671 653 TVNLYG-----------------SIAYVSQTS-WIQSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDH 707 (1361)
Q Consensus 653 ~v~~~g-----------------~iayv~Q~~-~i~~~ti~eni~~g~~~~-------~~~~~~~~~~~~l~~dl~~l~~ 707 (1361)
+|.++| ++++|+|+- .+++.||.||+.||.+.. +++..++++..+|...-+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~---- 159 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD---- 159 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh----
Confidence 999988 499999995 457789999999997632 345566777778876554
Q ss_pred CCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHH-hhc
Q 000671 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEV 785 (1361)
Q Consensus 708 gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~ 785 (1361)
..+.+||||+||||.||||+..+|||+|+|||||||||-.+..+-+++++... -+||+|+||||+++. +-.
T Consensus 160 -------~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 160 -------KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -------cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 45668999999999999999999999999999999999999998888776543 379999999999885 457
Q ss_pred CeEEEEeCCeEEEecChHHHHhcCc
Q 000671 786 DRILVLEGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 786 d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1361)
|||.+|+||+|++.|+++|+..++.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCcc
Confidence 9999999999999999999987653
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=332.46 Aligned_cols=192 Identities=28% Similarity=0.427 Sum_probs=161.2
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
++++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 67899999996422 24699999999999999999999999999999999999999999998865
Q ss_pred --eEEEEecCCcCC-CCCHHHHhhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 659 --SIAYVSQTSWIQ-SGSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 659 --~iayv~Q~~~i~-~~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
.++|++|++.++ +.|++||+.++. .++ .++..++++.+++...++ ..+.+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-----------HRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHH
Confidence 389999998776 569999998742 122 223455666666643332 45678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeEE
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1361)
+||||++.+|+++||||||++||+++.+.+.+.+..... .++|+|++||+++.+..+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999998876654433 478999999999998889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=352.78 Aligned_cols=188 Identities=33% Similarity=0.481 Sum_probs=163.2
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------------eEEEEecCCc
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------------SIAYVSQTSW 668 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------------~iayv~Q~~~ 668 (1361)
..+++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .++|++|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 3579999999999999999999999999999999999999999999876 3999999998
Q ss_pred CCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 669 IQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 669 i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
+++ .|++||+.++.. .+ .++..++++..+|....+ ..+.+||||||||++||||++.+|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~-----------~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD-----------KKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 875 799999998642 22 234556677777654433 45678999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
+||||||||||+.+.+.+.+.+..... .++|+|++|||++++.. +|+|++|++|++++.|+++++..+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999999887766544 38999999999998755 899999999999999999999765
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=338.58 Aligned_cols=207 Identities=28% Similarity=0.410 Sum_probs=173.8
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC-------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG------- 658 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g------- 658 (1361)
..+.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 10 ~~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 10 APSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred CCceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 3457999999999964 369999999999999999999999999999999999986 5899998865
Q ss_pred --------eEEEEecCCcCCCCCHHHHhhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 659 --------SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 659 --------~iayv~Q~~~i~~~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
.++|++|++.++..|++||+.++.. .+. ++.+++++..++..++. ..+++++.+|||
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 159 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSG 159 (260)
T ss_pred cchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCH
Confidence 3899999998888999999987532 222 34455666666543322 123467789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+.. +|++++|++|++++.|+
T Consensus 160 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 238 (260)
T PRK10744 160 GQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGN 238 (260)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999988765544 457899999999999865 89999999999999999
Q ss_pred hHHHHhc
Q 000671 802 YQELLLA 808 (1361)
Q Consensus 802 ~~~l~~~ 808 (1361)
.+++...
T Consensus 239 ~~~~~~~ 245 (260)
T PRK10744 239 TDTIFTK 245 (260)
T ss_pred HHHHHhC
Confidence 9988653
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=341.43 Aligned_cols=204 Identities=24% Similarity=0.376 Sum_probs=175.1
Q ss_pred cEEEEeeEEEeCCCC---CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000671 594 SVKIQEGNFSWDPEL---AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~---~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------ 658 (1361)
-++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 488999999997431 24699999999999999999999999999999999999999999998876
Q ss_pred --eEEEEecCCc--CCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 --SIAYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 --~iayv~Q~~~--i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.++|++|+|. ++..|+.||+.|+.. .+ +++.+++++.++|.+.++ ....+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR-----------HAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHH
Confidence 3899999984 566799999998632 22 245667777778765544 4567899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHH
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1361)
++||||++.+|+++||||||++||+.+.+.+.+.+..... +|.|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999998876554433 489999999999998789999999999999999999986
Q ss_pred hc
Q 000671 807 LA 808 (1361)
Q Consensus 807 ~~ 808 (1361)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=338.64 Aligned_cols=203 Identities=26% Similarity=0.414 Sum_probs=171.6
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
++.++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 356999999999974 3699999999999999999999999999999999999999999998776
Q ss_pred -------------eEEEEecCCcCCC-CCHHHHhhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCC
Q 000671 659 -------------SIAYVSQTSWIQS-GSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1361)
Q Consensus 659 -------------~iayv~Q~~~i~~-~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 716 (1361)
.++|+||++.++. .|++||+.++. ..+ +++..++++..++...+. ...
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~ 149 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKY 149 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCC
Confidence 3899999998775 69999997642 122 223445555555543221 256
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCe
Q 000671 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1361)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1361)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 78999999999999999999999999999999999999999987665544468999999999999986 89999999999
Q ss_pred EEEecChHHHHh
Q 000671 796 ITQSGNYQELLL 807 (1361)
Q Consensus 796 i~~~g~~~~l~~ 807 (1361)
+++.|+++++..
T Consensus 230 i~~~~~~~~~~~ 241 (257)
T PRK10619 230 IEEEGAPEQLFG 241 (257)
T ss_pred EEEeCCHHHhhh
Confidence 999999988764
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=329.44 Aligned_cols=192 Identities=28% Similarity=0.449 Sum_probs=163.0
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEec
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------~iayv~Q 665 (1361)
++++|+++.|+. .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 468999999963 3699999999999999999999999999999999999999999999987 4999999
Q ss_pred CCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 000671 666 TSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1361)
Q Consensus 666 ~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1361)
++.++. .|++||+.+... .. .++..+.++..++..... .+..+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHHHhcC
Confidence 987765 699999976421 11 234455666666654332 46678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999987765544468899999999999865 8999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=340.42 Aligned_cols=202 Identities=23% Similarity=0.324 Sum_probs=170.5
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 36899999999963 4689999999999999999999999999999999999999999998876
Q ss_pred --eEEEEecCCcCCC-CCHHHHhhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 --SIAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 --~iayv~Q~~~i~~-~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.++|++|++.+++ .|++||+.++. ..+. ++..+.++.+++....+ .+..+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-----------LMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHH
Confidence 3899999998775 59999998642 1222 23344555555543222 4567899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
++||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999988766554433 7999999999999876 899999999999999999998
Q ss_pred Hhc
Q 000671 806 LLA 808 (1361)
Q Consensus 806 ~~~ 808 (1361)
.+.
T Consensus 232 ~~~ 234 (269)
T PRK11831 232 QAN 234 (269)
T ss_pred hcC
Confidence 754
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=338.32 Aligned_cols=207 Identities=25% Similarity=0.354 Sum_probs=170.7
Q ss_pred cEEEEeeEEEeCCC------CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000671 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------- 658 (1361)
.++++|++++|+.. .+.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999642 135699999999999999999999999999999999999999999998876
Q ss_pred -------eEEEEecCCc--C-CCCCHHHHhhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 659 -------SIAYVSQTSW--I-QSGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 659 -------~iayv~Q~~~--i-~~~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
.++|++|+|. + ...|++||+.++. .++ .++..++++..++..++ ...++.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED----------ADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh----------hhCChhhC
Confidence 3999999973 3 3579999996532 122 23445555555553211 23567899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
|||||||++||||++++|+++||||||++||+.+.+.+.+.+.+... .|+|+|++||+++.+.. ||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999988876655444 38999999999999875 89999999999999
Q ss_pred ecChHHHHhcCc
Q 000671 799 SGNYQELLLAGT 810 (1361)
Q Consensus 799 ~g~~~~l~~~~~ 810 (1361)
.|+++++.....
T Consensus 232 ~g~~~~~~~~~~ 243 (265)
T TIGR02769 232 ECDVAQLLSFKH 243 (265)
T ss_pred ECCHHHHcCCCC
Confidence 999999876433
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=339.14 Aligned_cols=203 Identities=22% Similarity=0.337 Sum_probs=171.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999753 24589999999999999999999999999999999999999999999987 38
Q ss_pred EEEecCCc--CCCCCHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 661 ayv~Q~~~--i~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|++|+|. +++.|+++|+.++.. ... ++..++++..++.+..+ .++.+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHH
Confidence 99999985 566799999988632 222 23344555555543322 46679999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
||++.+|+++||||||++||+.+.+.+++.+..... .++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999876655433 37999999999999878999999999999999999988654
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=354.15 Aligned_cols=188 Identities=27% Similarity=0.412 Sum_probs=162.1
Q ss_pred CcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEEEEecCCcCC-CC
Q 000671 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQ-SG 672 (1361)
Q Consensus 611 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------------~iayv~Q~~~i~-~~ 672 (1361)
++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| +++|++|++.++ +.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 379999999999999999999999999999999999999999998875 389999998876 46
Q ss_pred CHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 673 SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 673 ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
|++||+.++.. ++ .++..++++.++|....+ ..+.+||||||||++||||++.+|+++||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~-----------~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH-----------SYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998632 22 234556677777754433 4567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 746 PFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc
Confidence 9999999999999877665443 48999999999998765 8999999999999999999987653
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=336.74 Aligned_cols=201 Identities=27% Similarity=0.432 Sum_probs=168.8
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3789999999964 3599999999999999999999999999999999999999999997754
Q ss_pred ------eEEEEecCCcCC-CCCHHHHhhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 659 ------SIAYVSQTSWIQ-SGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 659 ------~iayv~Q~~~i~-~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
.++|++|++.++ +.|++||+.++. ..+. ++..+.++..++... ...++.+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChH
Confidence 389999998776 479999997642 1221 234445555554322 23567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecCh
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1361)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999887655444458999999999999876 899999999999999999
Q ss_pred HHHHhc
Q 000671 803 QELLLA 808 (1361)
Q Consensus 803 ~~l~~~ 808 (1361)
+++.+.
T Consensus 229 ~~~~~~ 234 (250)
T PRK11264 229 KALFAD 234 (250)
T ss_pred HHHhcC
Confidence 988643
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=332.09 Aligned_cols=200 Identities=23% Similarity=0.352 Sum_probs=166.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4889999999963 4699999999999999999999999999999999999999999998876 2
Q ss_pred EEEEecCCcCCC-CCHHHHhhcCCCC-CHH----HHHHHHHHh-cchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 660 IAYVSQTSWIQS-GSIRDNILYGKPM-DKA----RYDKAIKAC-ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 660 iayv~Q~~~i~~-~ti~eni~~g~~~-~~~----~~~~~~~~~-~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
++|++|++.++. .|++||+.++... +.+ +..++++.. .+.+. ...++.+||||||||++|||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHER-----------RIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHH-----------HhCchhhCCHHHHHHHHHHH
Confidence 899999987765 5999999886421 212 222223322 12111 12466789999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
|++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999999887666544568999999999998765 89999999999999999998864
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=336.05 Aligned_cols=199 Identities=26% Similarity=0.397 Sum_probs=170.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 3699999999999999999999999999999999999999999999876 389
Q ss_pred EEecCCcCCC-CCHHHHhhcCCC-----C------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 662 YVSQTSWIQS-GSIRDNILYGKP-----M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 662 yv~Q~~~i~~-~ti~eni~~g~~-----~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
|++|++.++. .|+.||+.++.. + +.++..++++.+++....+ .++..||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHHH
Confidence 9999987765 499999988631 1 1234555666666654333 466789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. +|++++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999887665544468999999999999875 89999999999999999988764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=336.13 Aligned_cols=200 Identities=21% Similarity=0.337 Sum_probs=168.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 5899999999963 4699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCCcCCC-CCHHHHhhcCCC----------------CC------HHHHHHHHHHhcchHHHhcCCCCCCccccCC
Q 000671 660 IAYVSQTSWIQS-GSIRDNILYGKP----------------MD------KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1361)
Q Consensus 660 iayv~Q~~~i~~-~ti~eni~~g~~----------------~~------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 716 (1361)
++|++|++.++. .|++||+.++.. .. .++..+.++..++... ...+
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH-----------ANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhh-----------hhCC
Confidence 789999998765 599999997521 00 1123334444444322 3367
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCC
Q 000671 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGG 794 (1361)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1361)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+ ++|+|++||+++.+.. ||++++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 7899999999999999999999999999999999999999998766655444 7899999999999866 8999999999
Q ss_pred eEEEecChHHHHh
Q 000671 795 QITQSGNYQELLL 807 (1361)
Q Consensus 795 ~i~~~g~~~~l~~ 807 (1361)
++++.|+.+++..
T Consensus 231 ~i~~~~~~~~~~~ 243 (255)
T PRK11300 231 TPLANGTPEEIRN 243 (255)
T ss_pred eEEecCCHHHHhh
Confidence 9999999888754
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=338.87 Aligned_cols=200 Identities=26% Similarity=0.370 Sum_probs=169.1
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------~ 659 (1361)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 678999999963 3699999999999999999999999999999999999999999998865 3
Q ss_pred EEEEecCCc--CCCCCHHHHhhcCC---CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 660 IAYVSQTSW--IQSGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 660 iayv~Q~~~--i~~~ti~eni~~g~---~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
++|++|++. ++..|+.||+.++. ..+. ++..++++.+++....+ ..+.+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHH
Confidence 899999975 46678999998742 1222 23445666666643322 4567899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999887665544468999999999999865 899999999999999999887653
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=332.14 Aligned_cols=198 Identities=29% Similarity=0.470 Sum_probs=166.3
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~i 660 (1361)
++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999974 3699999999999999999999999999999999999999999999876 38
Q ss_pred EEEecCCcCCC-CCHHHHhhcCCCC---C-HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 661 AYVSQTSWIQS-GSIRDNILYGKPM---D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 661 ayv~Q~~~i~~-~ti~eni~~g~~~---~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+|++|++.++. .|++||+.++... . .+.+.++++..+...+ ...++..+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~----------~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKE----------MLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHH----------HhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999987765 5999999875321 1 2233444544432111 123567899999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
++|+++||||||++||+.+.+++.+.+..... .++|+|++||+++.+.. ||+|+++++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999998876655444 37999999999999886 899999999999999998887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=327.84 Aligned_cols=190 Identities=26% Similarity=0.398 Sum_probs=161.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|+++.|+. .++++|+||++++| +++|+||||||||||+++|.|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 478999999964 36999999999999 9999999999999999999999999999999877 3899
Q ss_pred EecCCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
++|++.++. .|++||+.+... .+ +++.+++++.+++.+..+ ..+.+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHHH
Confidence 999998765 599999986321 11 234566777777764433 45678999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
+++|+++||||||++||+.+.+.+.+.+.+.. +++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELG-EDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887655443 46899999999999875 8999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=337.47 Aligned_cols=206 Identities=23% Similarity=0.378 Sum_probs=173.0
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC-------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG------- 658 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g------- 658 (1361)
.+..|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 16 ~~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 16 TEIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 4557999999999963 3699999999999999999999999999999999999974 899998876
Q ss_pred --------eEEEEecCCcCCCCCHHHHhhcCCC---C--C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 659 --------SIAYVSQTSWIQSGSIRDNILYGKP---M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 659 --------~iayv~Q~~~i~~~ti~eni~~g~~---~--~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
.++|++|+|.+++.|++||+.++.. . . .++..++++.+++.+++. +..++.+.+||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 3899999998887899999987531 1 1 233455666666644322 12246678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-hcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999987765443 457899999999999865 8999999999999999
Q ss_pred ChHHHHh
Q 000671 801 NYQELLL 807 (1361)
Q Consensus 801 ~~~~l~~ 807 (1361)
+.+++..
T Consensus 245 ~~~~~~~ 251 (267)
T PRK14235 245 DTEKMFT 251 (267)
T ss_pred CHHHHHh
Confidence 9988864
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=329.49 Aligned_cols=189 Identities=26% Similarity=0.409 Sum_probs=160.6
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
++++|++++|+.+ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999643 3699999999999999999999999999999999999999999998876
Q ss_pred eEEEEecCCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.++|++|++.++. .|++||+.++.. .+ +++..+.++.+++...++ ....+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-----------ALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHH
Confidence 3899999987765 699999987531 12 234556677777654433 3456899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeE
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1361)
|||++.+|+++||||||++||+++.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999887665544468999999999999886 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=339.75 Aligned_cols=201 Identities=25% Similarity=0.447 Sum_probs=170.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------~ 659 (1361)
++++|++++|+.+ .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 6799999999632 3589999999999999999999999999999999999999999998876 2
Q ss_pred EEEEecCC--cCCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 660 IAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 660 iayv~Q~~--~i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
|+|++|+| .+++.|++||+.++.. .. .++..++++.+++....+ .++.+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHHHHHHHH
Confidence 89999997 5677899999987531 22 134455666666643222 4567899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|||++.+|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999987765544458999999999999875 899999999999999999988653
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=328.73 Aligned_cols=187 Identities=31% Similarity=0.497 Sum_probs=158.6
Q ss_pred EEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEE
Q 000671 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYV 663 (1361)
Q Consensus 597 ~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~iayv 663 (1361)
++|++++|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 2 ~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 67899999642 24689999999999999999999999999999999999999999999876 38999
Q ss_pred ecCCc--CCCCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 664 SQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 664 ~Q~~~--i~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
+|++. +++.|++||+.++.. .+ .++..+.++..++.+.++ ++..+||||||||++||||+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHHH
Confidence 99983 577899999987522 22 223455666666654433 45678999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCe
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1361)
+.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999988766554458999999999999987 89999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=330.49 Aligned_cols=196 Identities=28% Similarity=0.379 Sum_probs=165.6
Q ss_pred CcEEEEeeEEEeCCCCC-CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 593 RSVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
..++++|++++|++... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 35899999999975322 3589999999999999999999999999999999999999999998865
Q ss_pred ----eEEEEecCCcCCC-CCHHHHhhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 ----SIAYVSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ----~iayv~Q~~~i~~-~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|++.++. .|++||+.++. ..+ .++..++++.+++.+.++ .+..+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge~q 153 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-----------HLPAQLSGGEQQ 153 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHH
Confidence 3899999987765 69999998642 111 335566777777765443 455689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeEEEe
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1361)
|++||||++.+|+++||||||++||+...+.+.+.+.+... .++|+|++||+++.+..+|++++|++|++++.
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999998876655444 37899999999999888999999999999753
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=326.53 Aligned_cols=190 Identities=29% Similarity=0.442 Sum_probs=161.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
|+++|++++|+.. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 4689999999642 2 399999999999999999999999999999999999999999987 38999
Q ss_pred ecCCcCCC-CCHHHHhhcCCC-------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 664 SQTSWIQS-GSIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 664 ~Q~~~i~~-~ti~eni~~g~~-------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+|++.++. .|++||+.++.. .++++..++++.+++.+..+ ....+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEK-----------RLPGELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHHHh
Confidence 99998775 599999987532 12335667777777765444 345689999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
.+|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999998876655433 48999999999999876 8999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=334.25 Aligned_cols=200 Identities=29% Similarity=0.385 Sum_probs=171.0
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|+. .++|+|+||++++|++++|+|+||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 3789999999974 3599999999999999999999999999999999999999999999877 28
Q ss_pred EEEecCCcC-CCCCHHHHhhcCCC-C------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHH
Q 000671 661 AYVSQTSWI-QSGSIRDNILYGKP-M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 661 ayv~Q~~~i-~~~ti~eni~~g~~-~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1361)
+|++|++.+ ++.|++||+.++.. . .+++.+++++..++....+ ....+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHH
Confidence 999999876 67899999987532 1 1234556666666654333 456799999999999999
Q ss_pred HHc------cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 733 AVY------NDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 733 al~------~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
|++ .+|+++||||||++||+.+.+.+.+.+.... .+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 5999999999999999999999887665544 458999999999999875 89999999999999999988
Q ss_pred HHh
Q 000671 805 LLL 807 (1361)
Q Consensus 805 l~~ 807 (1361)
+..
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=333.32 Aligned_cols=199 Identities=21% Similarity=0.340 Sum_probs=168.1
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
-++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 3789999999964 3699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCCcCCC-CCHHHHhhcCCCC---------------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 660 IAYVSQTSWIQS-GSIRDNILYGKPM---------------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 660 iayv~Q~~~i~~-~ti~eni~~g~~~---------------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
++|++|++.+++ .|++||+.++... ++++..+.++..++... ...+..+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE-----------ADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHH
Confidence 899999988776 5999999875321 12233444444444322 23567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecCh
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1361)
||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL-AGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCH
Confidence 999999999999999999999999999999999988765543 447899999999999876 899999999999999999
Q ss_pred HHHHh
Q 000671 803 QELLL 807 (1361)
Q Consensus 803 ~~l~~ 807 (1361)
+++..
T Consensus 227 ~~~~~ 231 (242)
T TIGR03411 227 DQVQA 231 (242)
T ss_pred HHHhc
Confidence 88764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=329.38 Aligned_cols=188 Identities=23% Similarity=0.421 Sum_probs=160.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
++++|++++|+. +.++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 678999999952 24699999999999999999999999999999999999999999998765
Q ss_pred eEEEEecCCcCC-CCCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~i~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.++|++|+|.++ ..|++||+.++.. .+ +++.++.++..++.+.++ ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-----------AFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 389999999876 4799999987521 22 235566777777754443 3456899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCe
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1361)
|||++.+|+++||||||++||+.+...+.+.+.....+++|+|++||+++.+.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999987766544468999999999999876 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=338.53 Aligned_cols=202 Identities=27% Similarity=0.422 Sum_probs=172.8
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++++|+.+ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999643 3589999999999999999999999999999999999999999999876 38
Q ss_pred EEEecCCc--CCCCCHHHHhhcCC---CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 661 AYVSQTSW--IQSGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 661 ayv~Q~~~--i~~~ti~eni~~g~---~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
+|++|+|. +++.|++||+.++. ..++ +++++.++.+++.+.+. ..+..||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-----------RVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHHHHH
Confidence 99999973 56789999998753 2333 24566677777765443 45678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
||++.+|+++||||||++||+.+.+.+.+.+.....+ +.|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999988766554443 8999999999999865 899999999999999999998753
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=336.46 Aligned_cols=203 Identities=22% Similarity=0.307 Sum_probs=173.3
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------ 658 (1361)
+...++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (265)
T PRK10253 4 SVARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80 (265)
T ss_pred cccEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHh
Confidence 3457999999999974 3599999999999999999999999999999999999999999999876
Q ss_pred -eEEEEecCCcCC-CCCHHHHhhcCC-C-------CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -SIAYVSQTSWIQ-SGSIRDNILYGK-P-------MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -~iayv~Q~~~i~-~~ti~eni~~g~-~-------~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.++ +.|++||+.++. + .. .++..++++..++.+..+ .++.+||||||
T Consensus 81 ~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~ 149 (265)
T PRK10253 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQR 149 (265)
T ss_pred hheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHH
Confidence 389999998765 579999998752 1 11 234556666666654332 56789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 150 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (265)
T PRK10253 150 QRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPK 229 (265)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999877655444 48899999999998765 8999999999999999998
Q ss_pred HHHh
Q 000671 804 ELLL 807 (1361)
Q Consensus 804 ~l~~ 807 (1361)
++..
T Consensus 230 ~~~~ 233 (265)
T PRK10253 230 EIVT 233 (265)
T ss_pred HHhh
Confidence 8764
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=332.05 Aligned_cols=200 Identities=21% Similarity=0.375 Sum_probs=168.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3789999999963 3699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEecCCcCCC-CCHHHHhhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 660 IAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 660 iayv~Q~~~i~~-~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
++|++|++.++. .|++||+.+... .+. ++..+.++..++... ...+..+||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL-----------RDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHH-----------hhcchhhCCHHHHHHHHH
Confidence 899999987765 699999987532 121 234445555544322 235678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
|||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999999876654444468999999999988765 89999999999999999988764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=336.68 Aligned_cols=202 Identities=25% Similarity=0.355 Sum_probs=172.2
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------- 658 (1361)
+..++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 9 ~~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (265)
T PRK10575 9 DTTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85 (265)
T ss_pred CceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhh
Confidence 346999999999963 3699999999999999999999999999999999999999999999887
Q ss_pred eEEEEecCCcC-CCCCHHHHhhcCCC--------C---CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 SIAYVSQTSWI-QSGSIRDNILYGKP--------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ~iayv~Q~~~i-~~~ti~eni~~g~~--------~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|++-+ +..|++||+.++.. . ..++..++++.+++...++ ....+|||||||
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~q 154 (265)
T PRK10575 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-----------RLVDSLSGGERQ 154 (265)
T ss_pred heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCCHHHHH
Confidence 38999999755 55699999987521 1 1234566777777754433 455689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
|++||||++.+|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 155 RAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999998876655443 38999999999999865 89999999999999999988
Q ss_pred HHh
Q 000671 805 LLL 807 (1361)
Q Consensus 805 l~~ 807 (1361)
+..
T Consensus 235 ~~~ 237 (265)
T PRK10575 235 LMR 237 (265)
T ss_pred hcC
Confidence 764
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=329.87 Aligned_cols=198 Identities=23% Similarity=0.336 Sum_probs=166.2
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ 659 (1361)
..++++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 6 ~~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 6 PLLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred ceEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 46899999999963 3699999999999999999999999999999999999999999999886 3
Q ss_pred EEEEecCCcCCCCCHHHHhhcCCC-----CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 660 IAYVSQTSWIQSGSIRDNILYGKP-----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 660 iayv~Q~~~i~~~ti~eni~~g~~-----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
++|++|++.+++.|++||+.++.. .++++..+.++.+++.++ ....++.+||||||||++||||+
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDT----------ILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChH----------HhcCCcccCCHHHHHHHHHHHHH
Confidence 899999999888899999986421 123344556666655321 12366789999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEe-CCeEEEecChH
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLE-GGQITQSGNYQ 803 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~-~G~i~~~g~~~ 803 (1361)
+++|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999988776554433 4889999999999998899999994 66667777764
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=331.83 Aligned_cols=198 Identities=28% Similarity=0.390 Sum_probs=166.7
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999964 3699999999999999999999999999999999999999999998865
Q ss_pred ---eEEEEecCCcCCC-CCHHHHhhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 ---SIAYVSQTSWIQS-GSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ---~iayv~Q~~~i~~-~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|++.++. .|++||+.++. ... .++..+.++..++...+ ...+.+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYA-----------DRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHH
Confidence 3899999997764 69999997421 111 22344455555554333 3456799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
|++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. +|++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999887655444458999999999999876 899999999999999998876
Q ss_pred H
Q 000671 806 L 806 (1361)
Q Consensus 806 ~ 806 (1361)
.
T Consensus 229 ~ 229 (242)
T PRK11124 229 T 229 (242)
T ss_pred c
Confidence 4
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=336.17 Aligned_cols=206 Identities=22% Similarity=0.362 Sum_probs=171.3
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g-------- 658 (1361)
+..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 11 ~~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 11 NIIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 346999999999964 358999999999999999999999999999999999987 5899998865
Q ss_pred -------eEEEEecCCcCCCCCHHHHhhcCCCC---C---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -------SIAYVSQTSWIQSGSIRDNILYGKPM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -------~iayv~Q~~~i~~~ti~eni~~g~~~---~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.++..|++||+.++... + +++..++++.+++...++ .....++.+||||||
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 160 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQ 160 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHH
Confidence 38999999988778999999986432 1 233445555555533222 123466789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeC-----------
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG----------- 793 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~----------- 793 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+.. ||++++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL-KKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 9999999999999999999999999999999988765443 457899999999998865 899999996
Q ss_pred CeEEEecChHHHHhc
Q 000671 794 GQITQSGNYQELLLA 808 (1361)
Q Consensus 794 G~i~~~g~~~~l~~~ 808 (1361)
|++++.|+.+++.+.
T Consensus 240 g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 240 GYLVEFNETKKIFNS 254 (269)
T ss_pred ceEEEeCCHHHHHhC
Confidence 678999999998653
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=335.71 Aligned_cols=205 Identities=26% Similarity=0.379 Sum_probs=170.8
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g--------- 658 (1361)
..++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+.+| ++|+|.++|
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 36899999999963 3689999999999999999999999999999999999975 799998765
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++.. .+.+ +..++++.+++..++. ....+++.+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHH
Confidence 3899999998888999999987531 2222 2344555555532221 123467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL-KKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999988765544 457999999999999865 89999999999999999998
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+.++
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 8643
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=335.70 Aligned_cols=208 Identities=23% Similarity=0.358 Sum_probs=175.0
Q ss_pred CCCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC------
Q 000671 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG------ 658 (1361)
Q Consensus 590 ~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g------ 658 (1361)
.....++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|.|+++ |++|+|.++|
T Consensus 16 ~~~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 16 EEEIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CCCeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 34457999999999963 469999999999999999999999999999999999986 5899998775
Q ss_pred ---------eEEEEecCCcCCCCCHHHHhhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 659 ---------SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 659 ---------~iayv~Q~~~i~~~ti~eni~~g~~----~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
.++|++|++.++..|++||+.++.. .+ +++..++++.+++.+++. +..++.+.+||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS 165 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLS 165 (267)
T ss_pred cCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCC
Confidence 3899999998888899999987532 11 233455666666654332 12346788999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
||||||++||||++++|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 244 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYD 244 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999988765544 457899999999999865 8999999999999999
Q ss_pred ChHHHHhc
Q 000671 801 NYQELLLA 808 (1361)
Q Consensus 801 ~~~~l~~~ 808 (1361)
+++++...
T Consensus 245 ~~~~~~~~ 252 (267)
T PRK14237 245 KTRNIFTN 252 (267)
T ss_pred CHHHHhcC
Confidence 99988653
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=316.47 Aligned_cols=166 Identities=34% Similarity=0.593 Sum_probs=151.4
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe------------EEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~------------iay 662 (1361)
++++|++++|+.. +.++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4689999999753 236999999999999999999999999999999999999999999999872 899
Q ss_pred EecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 000671 663 VSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1361)
Q Consensus 663 v~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ill 742 (1361)
++|+|++++.|++||+ +.+||||||||++||||++.+|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998889999998 45799999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEec
Q 000671 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1361)
Q Consensus 743 LDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 800 (1361)
|||||++||+++.+.+++.+.+. .+++|+|++||+++.++.+|++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999988766544 4689999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=344.54 Aligned_cols=188 Identities=23% Similarity=0.382 Sum_probs=162.6
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEEEecCCcCCC-CCHHH
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAYVSQTSWIQS-GSIRD 676 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iayv~Q~~~i~~-~ti~e 676 (1361)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+||+||++.++. .|++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 4689999999999999999999999999999999999999999999987 3899999987764 69999
Q ss_pred HhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000671 677 NILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1361)
Q Consensus 677 ni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~sa 749 (1361)
|+.+... .. .++.+++++.+++....+ .+..+||||||||++||||++++|++++|||||++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-----------RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-----------CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9986421 11 234666777777754433 46678999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 750 VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 750 lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999987665554568999999999999876 899999999999999999988643
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=334.93 Aligned_cols=204 Identities=25% Similarity=0.427 Sum_probs=170.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCC---ccC--CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE---IPK--ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~---~~~--~~G~v~~~g---------- 658 (1361)
.++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+ .++ ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5889999999964 3589999999999999999999999999999999997 454 589998765
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~----~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|+||++.+++.|++||+.++.. .+ +++.+++++.+++.++++ +...+++.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 3899999998888899999987532 11 223455666666643332 123467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999988766554 457999999999999865 89999999999999999999
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+.++
T Consensus 232 ~~~~ 235 (250)
T PRK14245 232 IFTN 235 (250)
T ss_pred HhcC
Confidence 8654
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=328.25 Aligned_cols=196 Identities=26% Similarity=0.395 Sum_probs=159.2
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68899999996431 12689999999999999999999999999999999999999999998865
Q ss_pred -eEEEEecCCc--C-CCCCHHHHhhcCCC-----CCHHHH----HHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -SIAYVSQTSW--I-QSGSIRDNILYGKP-----MDKARY----DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -~iayv~Q~~~--i-~~~ti~eni~~g~~-----~~~~~~----~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++. + .+.|++||+.++.. .+++.. .+.++.+++.. .....++.+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 3899999983 3 46799999976421 111111 13334444421 123366789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ |+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999988766554444 8999999999999875 8999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=326.32 Aligned_cols=198 Identities=27% Similarity=0.436 Sum_probs=169.7
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
++++|++++|+.. ..|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 2 l~~~~l~~~~~~~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHHL-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECCc-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 6799999999632 2399999999999999999999999999999999999999999887 38999
Q ss_pred ecCCcCCC-CCHHHHhhcCCC----CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 664 SQTSWIQS-GSIRDNILYGKP----MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 664 ~Q~~~i~~-~ti~eni~~g~~----~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+|++.++. .|++||+.++.. .. +++..++++..++.+.++ ....+||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-----------RLPGQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHh-----------CCcccCCHHHHHHHHHHHHHh
Confidence 99987765 599999987531 11 334666777777765544 345689999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
++|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999998876655444 38899999999999876 899999999999999999988754
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=333.97 Aligned_cols=200 Identities=28% Similarity=0.423 Sum_probs=169.2
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
|+++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999964 3699999999999999999999999999999999999999999998765
Q ss_pred ----------eEEEEecCCcCC-CCCHHHHhhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCC
Q 000671 659 ----------SIAYVSQTSWIQ-SGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1361)
Q Consensus 659 ----------~iayv~Q~~~i~-~~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1361)
.++|++|++.++ ..|++||+.++. ..+ .++..+.++..++.+.+ .+.+.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKA-----------DHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-----------hcChhh
Confidence 389999998776 579999998742 122 23345556666664433 256678
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEE
Q 000671 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1361)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1361)
||||||||++||||++.+|+++||||||++||+.+.+.+++.+.+...+ ++|+|++||+++.+.. +|++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999988766554443 8999999999999865 8999999999999
Q ss_pred EecChHHHHhc
Q 000671 798 QSGNYQELLLA 808 (1361)
Q Consensus 798 ~~g~~~~l~~~ 808 (1361)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999988654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=334.68 Aligned_cols=199 Identities=27% Similarity=0.409 Sum_probs=169.6
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 678999999964 3699999999999999999999999999999999999999999999877 389
Q ss_pred EEecCCc-CCCCCHHHHhhcCCC-C----------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 662 YVSQTSW-IQSGSIRDNILYGKP-M----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 662 yv~Q~~~-i~~~ti~eni~~g~~-~----------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
|++|++. .+..|++||+.++.. . +.++..++++.+++.+..+ .++.+||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD-----------RDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHH
Confidence 9999985 467899999987531 0 1124455666666643322 567789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||||++.+|+++||||||++||+...+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999887665544458899999999999965 89999999999999999988754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=332.65 Aligned_cols=204 Identities=28% Similarity=0.395 Sum_probs=170.0
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC-----CcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~-----~G~v~~~g---------- 658 (1361)
.++++|++++|+. .++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5889999999964 35999999999999999999999999999999999999987 69997754
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCCC----CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~~----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++... .+ ++.+++++..++.+.++ .....++.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 39999999998888999999886321 11 22333444444433222 123467889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999987755443 468999999999999876 79999999999999999988
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 8643
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=342.74 Aligned_cols=206 Identities=20% Similarity=0.313 Sum_probs=172.7
Q ss_pred cEEEEeeEEEeCCCC-------CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------
Q 000671 594 SVKIQEGNFSWDPEL-------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~-------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------- 658 (1361)
.++++|++++|+... ...+++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 589999999996421 24689999999999999999999999999999999999999999998876
Q ss_pred --------eEEEEecCCc--C-CCCCHHHHhhcC----CCCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCC
Q 000671 659 --------SIAYVSQTSW--I-QSGSIRDNILYG----KPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1361)
Q Consensus 659 --------~iayv~Q~~~--i-~~~ti~eni~~g----~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1361)
+|+|++|+|. + ...|+.+|+..+ .... .++..++++.++|.++. ....+.+
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH----------YDRYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHH----------hcCCCcc
Confidence 4999999983 3 446999998642 1122 23456667777774322 1246779
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEE
Q 000671 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1361)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1361)
|||||||||+||||++.+|+++|+||||++||+.+.+++.+.+.+... .|.|+|+||||++.+.. ||+|++|++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999887665444 48999999999999976 8999999999999
Q ss_pred EecChHHHHhcC
Q 000671 798 QSGNYQELLLAG 809 (1361)
Q Consensus 798 ~~g~~~~l~~~~ 809 (1361)
+.|+.+++.++.
T Consensus 235 e~g~~~~~~~~p 246 (327)
T PRK11308 235 EKGTKEQIFNNP 246 (327)
T ss_pred EECCHHHHhcCC
Confidence 999999998753
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=334.39 Aligned_cols=204 Identities=27% Similarity=0.419 Sum_probs=169.5
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc--C---CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~--~---~~G~v~~~g---------- 658 (1361)
.++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999964 369999999999999999999999999999999999987 3 589998765
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCCC----CHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~~----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++... +++ +..++++..++.+.+. .....++.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 38999999988888999999875321 211 2334455555543221 123467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+++.+.+.+.+.. ..+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK-LKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH-HhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999998765544 3457899999999999875 89999999999999999999
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+..+
T Consensus 241 ~~~~ 244 (259)
T PRK14274 241 MFSN 244 (259)
T ss_pred HhhC
Confidence 8654
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=341.71 Aligned_cols=198 Identities=24% Similarity=0.391 Sum_probs=171.0
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+||
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEE
Confidence 789999999963 4699999999999999999999999999999999999999999999877 3999
Q ss_pred EecCCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH
Q 000671 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1361)
+||++.++. .|++||+.+... .+ .++.+++++..++.+.. ..+..+||||||||++||||+
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHHH
Confidence 999998764 599999975321 22 23456666666665433 256789999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
+++|++++|||||++||+...+.+++.+... .+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-GKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999998766544 457999999999999876 89999999999999999999865
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=332.91 Aligned_cols=204 Identities=27% Similarity=0.376 Sum_probs=172.0
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
-++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4789999999963 3589999999999999999999999999999999999875 799998865
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCCC----C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~~----~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.|+... + .+++.++++.+++.+++.. ....++.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 38999999998889999999875321 1 1344566777766443322 12357789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~-~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL-KKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999987755443 446899999999999876 89999999999999999998
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14270 233 IFLE 236 (251)
T ss_pred HhcC
Confidence 8654
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=335.92 Aligned_cols=206 Identities=22% Similarity=0.329 Sum_probs=169.8
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g-------- 658 (1361)
+..++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 19 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 19 EHILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred CceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 346899999999964 369999999999999999999999999999999999864 6899998765
Q ss_pred -------eEEEEecCCcCCCCCHHHHhhcCCCC----C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 659 -------SIAYVSQTSWIQSGSIRDNILYGKPM----D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 659 -------~iayv~Q~~~i~~~ti~eni~~g~~~----~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
.++|++|++.+++.|++||+.++... . +++..+.++.+++..++. ...+.++.+||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 168 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGG 168 (268)
T ss_pred cHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHH
Confidence 38999999998888999999875321 1 122334444444432211 1234678899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecCh
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1361)
||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 247 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL-KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQT 247 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999987755443 446899999999998765 899999999999999999
Q ss_pred HHHHhc
Q 000671 803 QELLLA 808 (1361)
Q Consensus 803 ~~l~~~ 808 (1361)
+++..+
T Consensus 248 ~~~~~~ 253 (268)
T PRK14248 248 EQIFTS 253 (268)
T ss_pred HHHHhC
Confidence 888654
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=334.04 Aligned_cols=204 Identities=27% Similarity=0.435 Sum_probs=170.2
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g---------- 658 (1361)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4889999999964 369999999999999999999999999999999999997 4799998766
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC---C-CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~---~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++.. . ++ ++..++++.+++..+.. .....++.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhhCCHHHH
Confidence 2899999998888999999987532 1 11 23445556555532111 112357789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++++|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+.. +|+|++|++|++++.|+.++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL-KHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH-HcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987765544 457899999999999876 89999999999999999998
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14251 233 MFIA 236 (251)
T ss_pred HHhC
Confidence 8643
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=333.64 Aligned_cols=198 Identities=27% Similarity=0.440 Sum_probs=167.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC---CcEEEEcC------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG------------ 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~---~G~v~~~g------------ 658 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 5889999999963 46899999999999999999999999999999999999986 49998776
Q ss_pred ------eEEEEecCCcCCC-CCHHHHhhcCCC------------CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCC
Q 000671 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP------------MD---KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~-~ti~eni~~g~~------------~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 716 (1361)
.++|++|++.++. .|++||+.++.. .. +++.+++++..++...++ .+
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-----------QR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-----------CC
Confidence 2799999987665 699999987531 01 234555666666654332 46
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCC
Q 000671 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1361)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1361)
+.+||||||||++||||++.+|+++||||||++||+++.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 678999999999999999999999999999999999999998876655443 48999999999998765 8999999999
Q ss_pred eEEEecChHHH
Q 000671 795 QITQSGNYQEL 805 (1361)
Q Consensus 795 ~i~~~g~~~~l 805 (1361)
++++.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999999986
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=332.15 Aligned_cols=204 Identities=29% Similarity=0.381 Sum_probs=169.5
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|.|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4789999999964 3589999999999999999999999999999999999974 799998876
Q ss_pred ---eEEEEecCCcC-CCCCHHHHhhcCCCC-----CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ---SIAYVSQTSWI-QSGSIRDNILYGKPM-----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ---~iayv~Q~~~i-~~~ti~eni~~g~~~-----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.|||++|++.+ ++.|++||+.++... .. ++..++++.+++.+.+. ......+.+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 38999999864 578999999875321 11 23445556665533221 112356789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++++|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL-KKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 9999999999999999999999999999999988766554 457999999999999865 89999999999999999998
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14247 232 VFTN 235 (250)
T ss_pred HHcC
Confidence 8643
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=326.83 Aligned_cols=190 Identities=24% Similarity=0.354 Sum_probs=160.6
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
++++|+++.|+.+ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 6889999999432 4699999999999999999999999999999999999999999998876
Q ss_pred eEEEEecCCcC-CCCCHHHHhhcCC---CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSWI-QSGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~i-~~~ti~eni~~g~---~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.++|++|+|.+ ++.|++||+.++. ..+. ++.++.++..++.+.++ ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHHHHHHHH
Confidence 38999999875 6789999998752 1222 23445556666554333 4567899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1361)
|||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++++.. ||+|++|++|+++
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999887655544458899999999999876 7999999999986
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=326.66 Aligned_cols=196 Identities=21% Similarity=0.302 Sum_probs=169.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEec
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------~iayv~Q 665 (1361)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 468999999964 3689999999999999999999999999999999999999999999876 4899999
Q ss_pred CCcCC-CCCHHHHhhcCC---CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 000671 666 TSWIQ-SGSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1361)
Q Consensus 666 ~~~i~-~~ti~eni~~g~---~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1361)
++.++ +.|++||+.++. ..++++..+.++..++.+..+ .++.+||||||||++||||++.+|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 98765 479999997642 234566777788777765433 456789999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 742 lLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
+|||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999887665544468899999999999865 89999999999999998654
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=332.92 Aligned_cols=204 Identities=26% Similarity=0.398 Sum_probs=169.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCc--cC---CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PK---ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~--~~---~~G~v~~~g---------- 658 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|.|+. +| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 5899999999974 36999999999999999999999999999999999985 36 589998865
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC---C-CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~---~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++.. . ++ ++..++++.+++...+. +..++++.+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 3899999999888999999986521 1 11 23344555555543222 123467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL-KDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH-hhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999988765543 456899999999998765 89999999999999999999
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+.+.
T Consensus 234 ~~~~ 237 (252)
T PRK14239 234 MFMN 237 (252)
T ss_pred HHhC
Confidence 8654
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=331.41 Aligned_cols=204 Identities=28% Similarity=0.427 Sum_probs=169.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
.++++|+++.|+. .++++|+||+|++||+++|+|+||||||||+++|+|+.++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5889999999974 3699999999999999999999999999999999998763 699998875
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++.. . + +++..++++.+++.+++.. ...+.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHHH
Confidence 3899999998878999999987532 1 1 2234445555555433321 23467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987655443 457899999999998866 89999999999999999988
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 7643
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=331.76 Aligned_cols=194 Identities=26% Similarity=0.416 Sum_probs=164.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEecC
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQT 666 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------~iayv~Q~ 666 (1361)
++++|+++.|+. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|+
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 678999999964 3699999999999999999999999999999999999999999999877 38999999
Q ss_pred CcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 000671 667 SWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 667 ~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1361)
+.++. .|++||+.++.. .. .++..++++.+++...++ .++.+||||||||++||||++.+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-----------RYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHHHhcCC
Confidence 87765 699999987521 22 234566677766654333 456789999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEe--CCeEEEecCh
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLE--GGQITQSGNY 802 (1361)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 802 (1361)
+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|+ +|++++.++.
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999998876655433 48999999999999866 89999998 5999987654
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=310.29 Aligned_cols=206 Identities=29% Similarity=0.443 Sum_probs=171.1
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
-++++|++-.|.. .++|+++||++++||+++++|+||+||||||++|.|..++.+|+|.++| .
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4688999999975 4699999999999999999999999999999999999999999999988 3
Q ss_pred EEEEecCCcCC-CCCHHHHhhcCCCCCHH-HHHH--HHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 660 IAYVSQTSWIQ-SGSIRDNILYGKPMDKA-RYDK--AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 660 iayv~Q~~~i~-~~ti~eni~~g~~~~~~-~~~~--~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
|+||||...+| +.||+||+..|....+. +..+ .-+...+-+.+.. ....++.+|||||+|-++|||||+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lke-------r~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKE-------RRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHH-------HhcCcccCCChHHHHHHHHHHHHh
Confidence 99999998876 67999999987432211 1111 1112222232222 234788999999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHH-hhcCeEEEEeCCeEEEecChHHHHhcC
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
++|++++||||+.||-|...++||+.+.+...+ +-||++|.++..+. +-+||.+||++|+|+.+|+.+++.++.
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 999999999999999999999999877665544 67999999999985 458999999999999999999998654
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=345.73 Aligned_cols=198 Identities=28% Similarity=0.428 Sum_probs=170.1
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------- 658 (1361)
+++ |++++|+.. .+ |+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 455 788888642 23 89999999999999999999999999999999999999998765
Q ss_pred -eEEEEecCCcCC-CCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 659 -~iayv~Q~~~i~-~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
.++|++|++.++ +.|++||+.|+.. ...++.+++++.+++.+.++ .++.+|||||||||+||||++
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLD-----------RYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHHHHHH
Confidence 389999999876 4699999998743 33456777888887765443 456789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
.+|+++||||||++||+...+.+.+.+.....+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 999999999999999999999988776554444 7899999999998765 8999999999999999999998654
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=332.94 Aligned_cols=206 Identities=19% Similarity=0.314 Sum_probs=171.0
Q ss_pred cEEEEeeEEEeCCC------CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000671 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------- 658 (1361)
.++++|++++|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 58999999999631 124699999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEecCCc--C-CCCCHHHHhhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 659 ----SIAYVSQTSW--I-QSGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 659 ----~iayv~Q~~~--i-~~~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
.++|++|++. + ...|+.+|+.++. ... .++..++++.+++..+.. .....+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA----------SYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH----------hcCchhcCHH
Confidence 3899999974 3 3459999987532 122 234556677777743221 1345789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999998876665444 38899999999999886 89999999999999999
Q ss_pred hHHHHhcC
Q 000671 802 YQELLLAG 809 (1361)
Q Consensus 802 ~~~l~~~~ 809 (1361)
++++....
T Consensus 234 ~~~~~~~~ 241 (267)
T PRK15112 234 TADVLASP 241 (267)
T ss_pred HHHHhcCC
Confidence 99987653
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=330.57 Aligned_cols=198 Identities=22% Similarity=0.271 Sum_probs=163.0
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCc--cCCCcEEEEcC--------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG-------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~--~~~~G~v~~~g-------------- 658 (1361)
++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 468999999963 36899999999999999999999999999999999995 79999999876
Q ss_pred eEEEEecCCcCCC-CCHHHHhhcCCC----------CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCC-CCCh
Q 000671 659 SIAYVSQTSWIQS-GSIRDNILYGKP----------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL-NLSG 722 (1361)
Q Consensus 659 ~iayv~Q~~~i~~-~ti~eni~~g~~----------~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~-~LSg 722 (1361)
.++|++|++.++. .|++||+.+... .+ .++..++++.+++..++. ..+.. +|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFL----------NRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhc----------ccccccCcCH
Confidence 1899999987754 599999976321 11 123444555555543221 13333 5999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh--cCeEEEEeCCeEEEec
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE--VDRILVLEGGQITQSG 800 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~g 800 (1361)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999887665544468999999999999876 7999999999999999
Q ss_pred ChHHH
Q 000671 801 NYQEL 805 (1361)
Q Consensus 801 ~~~~l 805 (1361)
+++++
T Consensus 228 ~~~~~ 232 (243)
T TIGR01978 228 DVELA 232 (243)
T ss_pred CHHHh
Confidence 88765
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=325.09 Aligned_cols=188 Identities=29% Similarity=0.437 Sum_probs=159.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------~ 659 (1361)
++++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 468999999964 3699999999999999999999999999999999999999999998876 2
Q ss_pred EEEEecCCcCCC-CCHHHHhhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 660 IAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 660 iayv~Q~~~i~~-~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
++|++|++.++. .|++||+.++. ..+. ++..++++.+++...++ .+..+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKAD-----------AYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------hCccccCHHHHHHHHH
Confidence 899999998764 79999998752 2222 23455566666654333 4567899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeE
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1361)
|||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999887665544468999999999999876 899999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=331.99 Aligned_cols=204 Identities=27% Similarity=0.394 Sum_probs=171.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g---------- 658 (1361)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999964 368999999999999999999999999999999999976 4799998865
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCCC---C---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~~---~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.++|++|++.+++.|++||+.++... . +++..++++.+++..++.. ..+.++.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 38999999988878999999876421 1 2344555666666544432 1346788999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEe---------CCeEE
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE---------GGQIT 797 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~---------~G~i~ 797 (1361)
++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|+ +|+++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~ 238 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL-KEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV 238 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 99999999999999999999999999999987655443 446899999999999876 89999998 89999
Q ss_pred EecChHHHHhc
Q 000671 798 QSGNYQELLLA 808 (1361)
Q Consensus 798 ~~g~~~~l~~~ 808 (1361)
+.|+.+++...
T Consensus 239 ~~~~~~~~~~~ 249 (264)
T PRK14243 239 EFDRTEKIFNS 249 (264)
T ss_pred EeCCHHHHHhC
Confidence 99999998654
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=341.06 Aligned_cols=208 Identities=20% Similarity=0.350 Sum_probs=170.4
Q ss_pred cEEEEeeEEEeCCCCC-CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc----CCCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~----~~~G~v~~~g---------- 658 (1361)
.++++|++++|+.+.. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++ +++|+|.++|
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3789999999975322 358999999999999999999999999999999999997 4899999877
Q ss_pred -------eEEEEecCCc---CCCCCHHHHhhcC----CCCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 659 -------SIAYVSQTSW---IQSGSIRDNILYG----KPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 659 -------~iayv~Q~~~---i~~~ti~eni~~g----~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
.|+|++|+|. ....|+.+++... .... .++..+.++..+|.+.. ...+..+.+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhC
Confidence 2899999984 2446887766432 1112 23455666666664211 1134677899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
||||||||+||||++.+|+++|+||||++||+.++..+.+.+..... .|.|+|+||||++.+.. ||+|++|++|+|++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999887665443 48999999999999865 89999999999999
Q ss_pred ecChHHHHhcC
Q 000671 799 SGNYQELLLAG 809 (1361)
Q Consensus 799 ~g~~~~l~~~~ 809 (1361)
.|+.+++.++.
T Consensus 235 ~g~~~~~~~~p 245 (326)
T PRK11022 235 TGKAHDIFRAP 245 (326)
T ss_pred ECCHHHHhhCC
Confidence 99999998653
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=333.11 Aligned_cols=205 Identities=24% Similarity=0.370 Sum_probs=169.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g--------- 658 (1361)
..++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+.+ |++|+|.++|
T Consensus 23 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 23 VVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred eEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 36999999999974 358999999999999999999999999999999999987 6999998876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCC---C-CHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHH
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~---~-~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQ 724 (1361)
.+||++|++.++..|++||+.++.. . +++ +..+.++..++..++. ....+++.+|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHH
Confidence 3899999998888899999987531 1 111 1233333333322222 12346788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChH
Q 000671 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1361)
|||++||||++.+|+++||||||++||+.+.+.+.+.+.. ..+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE-LKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH-HHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999998875544 3457899999999999875 8999999999999999999
Q ss_pred HHHhc
Q 000671 804 ELLLA 808 (1361)
Q Consensus 804 ~l~~~ 808 (1361)
++..+
T Consensus 252 ~~~~~ 256 (271)
T PRK14238 252 KIFSN 256 (271)
T ss_pred HHHcC
Confidence 88654
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=309.62 Aligned_cols=161 Identities=26% Similarity=0.441 Sum_probs=146.2
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCCCC
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~~~ 672 (1361)
|+++|++++|+.+ +++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|++|++.+++.
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 4689999999643 4699999999999999999999999999999999999999999999987 79999999998889
Q ss_pred CHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q 000671 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1361)
Q Consensus 673 ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~ 752 (1361)
|++||+.++ ++.+||||||||++||||++++|++++|||||++||+
T Consensus 79 tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 79 TLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred cHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 999999864 2468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCC
Q 000671 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1361)
Q Consensus 753 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 794 (1361)
++.+.+.+.+.+. ++|+|++||+.+....||++++|++|
T Consensus 125 ~~~~~l~~~l~~~---~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 125 ESEDRLYQLLKEL---GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHHHHHh---CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 9999987755432 58999999999887779999999876
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=331.39 Aligned_cols=203 Identities=27% Similarity=0.404 Sum_probs=168.2
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC-----------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG----------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g----------- 658 (1361)
-+++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468899999963 468999999999999999999999999999999999986 4799998866
Q ss_pred ----eEEEEecCCcCCCCCHHHHhhcCCC---C--CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ----SIAYVSQTSWIQSGSIRDNILYGKP---M--DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ----~iayv~Q~~~i~~~ti~eni~~g~~---~--~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++.. . +. ++..++++..++.+++. +.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 3899999998888899999987521 1 11 22344555555543221 123456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL-KKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987655443 468999999999999876 89999999999999999988
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+...
T Consensus 235 ~~~~ 238 (251)
T PRK14244 235 IFKN 238 (251)
T ss_pred HhcC
Confidence 8654
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=327.47 Aligned_cols=199 Identities=26% Similarity=0.398 Sum_probs=172.5
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCCC
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~~ 671 (1361)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|++|++.++.
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 4889999999974 3699999999999999999999999999999999999999999999987 5999999986643
Q ss_pred ---CCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000671 672 ---GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1361)
Q Consensus 672 ---~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1361)
.|+++|+.+.....+++..++++.+++.+.++ .+..+||||||||++||||++.+|+++||||||+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-----------APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred ccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 48999987654445667788888888865543 4567899999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 749 AVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 749 alD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
+||+.+.+.+++.+.....+ ++|+|++||+++.+.. ||+|++|++ ++++.|+++++.+
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999988766554444 8999999999999865 899999965 7999999998864
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=332.57 Aligned_cols=207 Identities=24% Similarity=0.391 Sum_probs=172.5
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC-------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG------- 658 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g------- 658 (1361)
....++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 22 ~~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 22 EQTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CCcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 3456999999999964 369999999999999999999999999999999999987 4899998765
Q ss_pred --------eEEEEecCCcCCCCCHHHHhhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 659 --------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 659 --------~iayv~Q~~~i~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
.++|++|++.+++.|++||+.++.. . . +++..++++.+++.+++. +..++++.+|||
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 171 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSG 171 (272)
T ss_pred cCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCH
Confidence 4899999998887899999987522 1 1 123455555555544332 123567889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
|||||++||||++.+|++++|||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 172 Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~-~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL-KSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999987765544 357899999999999765 89999999999999999
Q ss_pred hHHHHhc
Q 000671 802 YQELLLA 808 (1361)
Q Consensus 802 ~~~l~~~ 808 (1361)
++++...
T Consensus 251 ~~~~~~~ 257 (272)
T PRK14236 251 TDTLFTS 257 (272)
T ss_pred HHHHhcC
Confidence 9887643
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=330.60 Aligned_cols=204 Identities=26% Similarity=0.373 Sum_probs=168.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4789999999964 3599999999999999999999999999999999999987 499998765
Q ss_pred -----eEEEEecCCcCCC-CCHHHHhhcCCC---C--CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP---M--DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~-~ti~eni~~g~~---~--~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
.++|++|++.++. .|++||+.++.. . .. ++..++++..++..++.. ....++.+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHH
Confidence 3899999998775 599999987521 1 12 223444554444332211 234677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecCh
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1361)
||||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999988766544 456899999999999765 899999999999999999
Q ss_pred HHHHhc
Q 000671 803 QELLLA 808 (1361)
Q Consensus 803 ~~l~~~ 808 (1361)
+++.+.
T Consensus 233 ~~~~~~ 238 (253)
T PRK14267 233 RKVFEN 238 (253)
T ss_pred HHHHhC
Confidence 988653
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=312.18 Aligned_cols=160 Identities=38% Similarity=0.598 Sum_probs=146.7
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
++++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4689999999743 24699999999999999999999999999999999999999999999876 489
Q ss_pred EEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 000671 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1361)
Q Consensus 662 yv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1361)
|++|++++++.|++||+ ||||||||++||||++.+|+++
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998888999998 9999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeE
Q 000671 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1361)
Q Consensus 742 lLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1361)
||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+..||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999987765544468999999999999888999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=325.86 Aligned_cols=199 Identities=33% Similarity=0.444 Sum_probs=169.1
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
++++|++++|+. +++|+|+||++.+||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEE
Confidence 468999999974 3699999999999999999999999999999999999999999998875 48999
Q ss_pred ecCCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 664 SQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 664 ~Q~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
||+|.++. .|++||+.++.. .+ .++..++++..++.+..+ ....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-----------RYPNQLSGGQRQRVALARALA 146 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 99998775 599999987542 12 223445555555543332 456789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
++|++++|||||++||+++.+.+.+.+.....+ ++|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999988766544444 7999999999999876 89999999999999999998864
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=320.57 Aligned_cols=190 Identities=25% Similarity=0.419 Sum_probs=162.4
Q ss_pred EEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEEe
Q 000671 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVS 664 (1361)
Q Consensus 596 ~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv~ 664 (1361)
+++|+++.|+. .++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++
T Consensus 2 ~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (213)
T TIGR01277 2 ALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLF 76 (213)
T ss_pred eEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEe
Confidence 68999999962 46799999999999999999999999999999999999999999876 389999
Q ss_pred cCCcCCC-CCHHHHhhcCC-C-C-----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHcc
Q 000671 665 QTSWIQS-GSIRDNILYGK-P-M-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1361)
Q Consensus 665 Q~~~i~~-~ti~eni~~g~-~-~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~ 736 (1361)
|+|.++. .|++||+.++. + . ++++.+++++.+++.+..+ ....+||||||||++||||++.
T Consensus 77 q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLD-----------RLPEQLSGGQRQRVALARCLVR 145 (213)
T ss_pred ccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhh-----------CCcccCCHHHHHHHHHHHHHhc
Confidence 9998765 69999998642 1 1 1335666777777764443 3456899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 737 DADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 737 ~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
+|++++|||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 146 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 146 PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999998876665444 37899999999999875 89999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=329.42 Aligned_cols=204 Identities=26% Similarity=0.382 Sum_probs=169.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
.++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4789999999963 3689999999999999999999999999999999999874 899998865
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC---C-CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~---~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.++..|++||+.++.. . .+ ++.++.++..++..++. ...++++.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 3999999998888999999987521 1 11 12334445455543322 123467889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++++.|+.++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEEL-SENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999987665543 457899999999998765 89999999999999999998
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14262 232 IVER 235 (250)
T ss_pred HHhC
Confidence 8653
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=325.80 Aligned_cols=200 Identities=31% Similarity=0.418 Sum_probs=170.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
+.++|++++|+. +++++|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEE
Confidence 468999999974 3699999999999999999999999999999999999999999999876 48999
Q ss_pred ecCCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 664 SQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 664 ~Q~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+|++..+. .|++||+.++.. .+ ++++.++++..++.+.++ ....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~laral~ 146 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYAN-----------RKPSQLSGGQQQRVAIARALV 146 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHHh
Confidence 99998774 599999986531 12 234556666666654443 455789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
.+|+++||||||++||+.+.+.+.+.+.....+ ++|+|++||+++.++. ||++++|++|++.+.|+.+++...
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999988766544333 8999999999999876 899999999999999998887643
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=328.21 Aligned_cols=205 Identities=24% Similarity=0.369 Sum_probs=170.3
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc--C---CCcEEEEcC---------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG--------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~--~---~~G~v~~~g--------- 658 (1361)
+.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 46899999999973 369999999999999999999999999999999999986 3 689998876
Q ss_pred ------eEEEEecCCcCCC-CCHHHHhhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~-~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
.++|++|++.++. .|++||+.++.. .+. ++..+.++.+++...+.. ..+..+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 2899999988766 699999986421 121 334556666666443321 123567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecCh
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1361)
||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL-KEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-HhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999987765443 456899999999999865 899999999999999999
Q ss_pred HHHHhc
Q 000671 803 QELLLA 808 (1361)
Q Consensus 803 ~~l~~~ 808 (1361)
+++...
T Consensus 232 ~~~~~~ 237 (252)
T PRK14256 232 KKIFTT 237 (252)
T ss_pred HHHHhC
Confidence 988654
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=329.31 Aligned_cols=202 Identities=23% Similarity=0.326 Sum_probs=166.2
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 5899999999964 3699999999999999999999999999999999999999999998765
Q ss_pred -------eEEEEecCCc---CCCCCHHHHhhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 659 -------SIAYVSQTSW---IQSGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 659 -------~iayv~Q~~~---i~~~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
.++|++|++. ..+.|++|||.+.. ..+ .++..++++.+++.. +..++++.+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~L 152 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTF 152 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccC
Confidence 2899999984 23568999986421 111 112233344444321 2234678899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
|||||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+ |.|+|++||+++.+.. ||+|++|++|++++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999988766544333 8899999999999975 89999999999999
Q ss_pred ecChHHHHhc
Q 000671 799 SGNYQELLLA 808 (1361)
Q Consensus 799 ~g~~~~l~~~ 808 (1361)
.|+++++..+
T Consensus 233 ~~~~~~~~~~ 242 (258)
T PRK11701 233 SGLTDQVLDD 242 (258)
T ss_pred eCCHHHHhcC
Confidence 9999988644
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=324.70 Aligned_cols=199 Identities=31% Similarity=0.454 Sum_probs=170.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv 663 (1361)
++++|+++.|.. ++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEE
Confidence 468899999963 279999999999999999999999999999999999999999999987 48999
Q ss_pred ecCCcCC-CCCHHHHhhcCCCC---C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 664 SQTSWIQ-SGSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 664 ~Q~~~i~-~~ti~eni~~g~~~---~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
+|++.++ ..|++||+.++... + .++..+.++.+++.+.++ ++..+||||||||++||||++
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~ 145 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-----------RKPETLSGGEQQRVAIARALV 145 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-----------cCcccCCHHHHHHHHHHHHHH
Confidence 9998776 57999999875321 1 223456677777765544 456789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
.+|++++|||||++||+.+.+++.+.+..... +++|+|++||+++.++. +|++++|++|++++.|+++++.+.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999999999998876655433 38999999999999876 899999999999999999887653
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=327.50 Aligned_cols=203 Identities=25% Similarity=0.381 Sum_probs=169.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
.++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4789999999973 4699999999999999999999999999999999999986 599998866
Q ss_pred ----eEEEEecCCcCCCCCHHHHhhcCCC---CC-H----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 ----SIAYVSQTSWIQSGSIRDNILYGKP---MD-K----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ----~iayv~Q~~~i~~~ti~eni~~g~~---~~-~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|++.++..|++||+.++.. .. + ++..+.++..++.+++. +....++.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 2899999998888999999987532 11 1 23344455555544332 1234677899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
|++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL-KKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999988755443 446899999999999876 899999999999999998887
Q ss_pred Hh
Q 000671 806 LL 807 (1361)
Q Consensus 806 ~~ 807 (1361)
..
T Consensus 232 ~~ 233 (249)
T PRK14253 232 FS 233 (249)
T ss_pred Hc
Confidence 54
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=340.12 Aligned_cols=207 Identities=19% Similarity=0.295 Sum_probs=170.6
Q ss_pred cEEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc----CCCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~----~~~G~v~~~g---------- 658 (1361)
.++++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+.+ +++|+|.++|
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 478999999996432 2468999999999999999999999999999999999986 5899999876
Q ss_pred -------eEEEEecCCcC---CCCCHHHHhhcCC---C-----C-----CHHHHHHHHHHhcchHHHhcCCCCCCccccC
Q 000671 659 -------SIAYVSQTSWI---QSGSIRDNILYGK---P-----M-----DKARYDKAIKACALDKDINNFDHGDLTEIGQ 715 (1361)
Q Consensus 659 -------~iayv~Q~~~i---~~~ti~eni~~g~---~-----~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~ 715 (1361)
.|+|++|+|.. ...||.+|+.+.. . . ..++..+.++..+|.+..+ ...+
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhC
Confidence 39999999852 3569999996421 0 0 1234556667766653111 1235
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeC
Q 000671 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEG 793 (1361)
Q Consensus 716 ~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~ 793 (1361)
.+.+|||||||||+||||++.+|+++|+||||++||+.+++++.+.+..... .|.|+|+||||++.+.. ||+|++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 6789999999999999999999999999999999999999999877665444 38999999999999976 899999999
Q ss_pred CeEEEecChHHHHhc
Q 000671 794 GQITQSGNYQELLLA 808 (1361)
Q Consensus 794 G~i~~~g~~~~l~~~ 808 (1361)
|+|++.|+.+++..+
T Consensus 235 G~ive~g~~~~i~~~ 249 (330)
T PRK15093 235 GQTVETAPSKELVTT 249 (330)
T ss_pred CEEEEECCHHHHHhC
Confidence 999999999998764
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=330.58 Aligned_cols=200 Identities=26% Similarity=0.419 Sum_probs=167.5
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEEE
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYV 663 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----------~iayv 663 (1361)
.++++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 6 ~l~~~~l~~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v 83 (272)
T PRK15056 6 GIVVNDVTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV 83 (272)
T ss_pred eEEEEeEEEEecCC--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEe
Confidence 58999999999632 4699999999999999999999999999999999999999999999887 39999
Q ss_pred ecCCcC---CCCCHHHHhhcCCC-----------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 664 SQTSWI---QSGSIRDNILYGKP-----------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 664 ~Q~~~i---~~~ti~eni~~g~~-----------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
+|++.+ ...++++|+.++.. .++++..++++..++....+ .+..+||||||||++
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~~qrv~ 152 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-----------RQIGELSGGQKKRVF 152 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHH
Confidence 999854 34579999875421 01234455666666654332 456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+++++ +|++++.|+++++..
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 9999999999999999999999999999887665544468999999999998765 8999777 899999999988753
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=328.92 Aligned_cols=205 Identities=27% Similarity=0.399 Sum_probs=172.8
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC--------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g-------- 658 (1361)
.+.|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 356999999999974 3699999999999999999999999999999999999875 799998754
Q ss_pred ---------eEEEEecCCcCCCCCHHHHhhcCCC---C-----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 659 ---------SIAYVSQTSWIQSGSIRDNILYGKP---M-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 659 ---------~iayv~Q~~~i~~~ti~eni~~g~~---~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
.++|++|++.++..|++||+.++.. . .+++..++++.+++.+++. +..++.+.+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 3899999999888899999987531 1 1244556666666654333 12346778999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
||||||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l-~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-HhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999988765543 446899999999999865 8999999999999999
Q ss_pred ChHHHHh
Q 000671 801 NYQELLL 807 (1361)
Q Consensus 801 ~~~~l~~ 807 (1361)
+.+++..
T Consensus 243 ~~~~~~~ 249 (265)
T PRK14252 243 ATDTIFI 249 (265)
T ss_pred CHHHHHh
Confidence 9988764
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=327.27 Aligned_cols=204 Identities=25% Similarity=0.346 Sum_probs=169.4
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
.|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+.++ ++|+|.++|
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5899999999963 3699999999999999999999999999999999998753 489998765
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCCC----CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~~----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++... +. ++..++++.+++.+++. +..++.+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHH
Confidence 38999999988888999999986321 11 12334445555533332 234577889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++++.|+.++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~-~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL-KKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 9999999999999999999999999999999987655443 446899999999999875 89999999999999999988
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+...
T Consensus 235 ~~~~ 238 (253)
T PRK14261 235 IFEN 238 (253)
T ss_pred HHhC
Confidence 7643
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=324.52 Aligned_cols=204 Identities=25% Similarity=0.394 Sum_probs=170.8
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC----CCcEEEEcC-----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYG----------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~----~~G~v~~~g----------- 658 (1361)
.++++|++++| . .++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence 58999999999 2 3689999999999999999999999999999999999999 999998876
Q ss_pred eEEEEecCCc-CC--CCCHHHHhhc-----CCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSW-IQ--SGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~-i~--~~ti~eni~~-----g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.++|++|++. .+ ..|+.+|+.+ +....++++.+.++.+++.+. .+.+++.+.+||||||||++|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~l 151 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMMI 151 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHHH
Confidence 3999999984 33 3588888754 323334566777777666431 123446778999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+.+++...
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999999999998876655433 47899999999999865 899999999999999999998754
Q ss_pred C
Q 000671 809 G 809 (1361)
Q Consensus 809 ~ 809 (1361)
.
T Consensus 232 ~ 232 (254)
T PRK10418 232 P 232 (254)
T ss_pred C
Confidence 3
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=338.13 Aligned_cols=209 Identities=18% Similarity=0.360 Sum_probs=170.5
Q ss_pred CcEEEEeeEEEeCCC-CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC---CcEEEEcC----------
Q 000671 593 RSVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG---------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~---~G~v~~~g---------- 658 (1361)
..++++|++++|... ....+++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 468999999999643 2346899999999999999999999999999999999999986 99998876
Q ss_pred -------eEEEEecCCc--C-CCCCHHHHhhcC----CCCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 659 -------SIAYVSQTSW--I-QSGSIRDNILYG----KPMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 659 -------~iayv~Q~~~--i-~~~ti~eni~~g----~~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
.|+|++|+|. + +..|+.+|+... ...+. ++..+.++..++ +++. ..++..+.+|
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~L 162 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEF 162 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccC
Confidence 3999999983 3 456898887542 12222 233344444443 2221 2245778999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
||||||||+||||++.+|+++|+||||+|||+.++..+.+.+..... .|.|+|+||||++.+.. ||+|++|++|+|++
T Consensus 163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive 242 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME 242 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999876655433 38899999999999875 89999999999999
Q ss_pred ecChHHHHhcC
Q 000671 799 SGNYQELLLAG 809 (1361)
Q Consensus 799 ~g~~~~l~~~~ 809 (1361)
.|+.+++.++.
T Consensus 243 ~g~~~~i~~~p 253 (330)
T PRK09473 243 YGNARDVFYQP 253 (330)
T ss_pred ECCHHHHHhCC
Confidence 99999998653
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=332.16 Aligned_cols=206 Identities=28% Similarity=0.448 Sum_probs=170.4
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g-------- 658 (1361)
+..++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 345899999999964 369999999999999999999999999999999999987 6899998865
Q ss_pred -------eEEEEecCCcCCCCCHHHHhhcCCC---CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -------~iayv~Q~~~i~~~ti~eni~~g~~---~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.++..|++||+.++.. .. .++.+++++..++...+.. ..++++.+||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~ 186 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQ 186 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHH
Confidence 3899999998887899999987421 11 2345556666665432221 23467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEE-EEeCCeEEEecChH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRIL-VLEGGQITQSGNYQ 803 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~-~l~~G~i~~~g~~~ 803 (1361)
||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|+++ +|++|+|++.|+++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~-~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEEL-AEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 9999999999999999999999999999999988765544 345899999999999876 89975 57999999999998
Q ss_pred HHHhc
Q 000671 804 ELLLA 808 (1361)
Q Consensus 804 ~l~~~ 808 (1361)
++..+
T Consensus 266 ~~~~~ 270 (285)
T PRK14254 266 KIFEN 270 (285)
T ss_pred HHHhC
Confidence 87643
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=325.58 Aligned_cols=209 Identities=21% Similarity=0.287 Sum_probs=172.2
Q ss_pred CcEEEEeeEEEeCCC-----------------CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEE
Q 000671 593 RSVKIQEGNFSWDPE-----------------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~-----------------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~ 655 (1361)
..|+++|++..|+.. ...++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 357788887777542 224589999999999999999999999999999999999999999999
Q ss_pred EcCeEEEEecCCcCC-CCCHHHHhhcCC---CCCHHHH----HHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 656 LYGSIAYVSQTSWIQ-SGSIRDNILYGK---PMDKARY----DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 656 ~~g~iayv~Q~~~i~-~~ti~eni~~g~---~~~~~~~----~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
++|.++|++|++.+. ..|++||+.++. .++.+.. .++++..++.+.+ ...+.+||||||||
T Consensus 83 ~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qr 151 (264)
T PRK13546 83 RNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFI-----------YQPVKKYSSGMRAK 151 (264)
T ss_pred ECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCCcccCCHHHHHH
Confidence 999999999998765 569999997642 2333322 2334444443322 35677999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHH
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 806 (1361)
++||||++++|+++||||||++||+...+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 v~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (264)
T PRK13546 152 LGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231 (264)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999887765544568999999999999876 8999999999999999999988
Q ss_pred hcCchH
Q 000671 807 LAGTAF 812 (1361)
Q Consensus 807 ~~~~~~ 812 (1361)
.....|
T Consensus 232 ~~~~~~ 237 (264)
T PRK13546 232 PKYEAF 237 (264)
T ss_pred HHhHHH
Confidence 754433
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=329.78 Aligned_cols=204 Identities=24% Similarity=0.323 Sum_probs=170.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5799999999974 3699999999999999999999999999999999999985 699998866
Q ss_pred ----eEEEEecCCcCCCCCHHHHhhcCCC----CCHHH----HHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 ----SIAYVSQTSWIQSGSIRDNILYGKP----MDKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ----~iayv~Q~~~i~~~ti~eni~~g~~----~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|++.+++.|++||+.++.. ...+. ..+.++.+++...+ .+.+.+.+.+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHHH
Confidence 3899999998888999999987532 22222 23344555543222 12234678899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
|++||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+.. +|++++|++|++++.|+++++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL-ADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999988765443 345899999999999876 899999999999999999998
Q ss_pred Hhc
Q 000671 806 LLA 808 (1361)
Q Consensus 806 ~~~ 808 (1361)
.+.
T Consensus 250 ~~~ 252 (276)
T PRK14271 250 FSS 252 (276)
T ss_pred HhC
Confidence 754
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=327.61 Aligned_cols=204 Identities=25% Similarity=0.399 Sum_probs=171.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 6899999999964 3589999999999999999999999999999999999885 489998865
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~----~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++.. ++ .++..++++.+++.+++... ....+.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK-------LNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHHH
Confidence 3899999998888999999987521 12 23345666666665433321 2367789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEe-----CCeEEEe
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE-----GGQITQS 799 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~-----~G~i~~~ 799 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL-RSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 9999999999999999999999999999999988766544 446899999999999876 89999997 5999999
Q ss_pred cChHHHHhc
Q 000671 800 GNYQELLLA 808 (1361)
Q Consensus 800 g~~~~l~~~ 808 (1361)
|+++++.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999998643
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=332.21 Aligned_cols=206 Identities=28% Similarity=0.380 Sum_probs=169.2
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g-------- 658 (1361)
+..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+.+ |++|+|.++|
T Consensus 37 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 37 KPHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred ceEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 346899999999964 358999999999999999999999999999999999864 4999998865
Q ss_pred -------eEEEEecCCcCCCCCHHHHhhcCCC---C-CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 659 -------~iayv~Q~~~i~~~ti~eni~~g~~---~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
.++|++|++.+++.|++||+.++.. . +. ++..++++..++...+.. ...+++.+||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgG 186 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD-------RLDKNALGLSGG 186 (286)
T ss_pred chHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh-------HhhCChhhCCHH
Confidence 3899999998887899999987532 1 11 223344444444321111 123677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecCh
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1361)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.. ..+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~-~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE-LRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999998875544 3446899999999999875 899999999999999999
Q ss_pred HHHHhc
Q 000671 803 QELLLA 808 (1361)
Q Consensus 803 ~~l~~~ 808 (1361)
+++..+
T Consensus 266 ~~~~~~ 271 (286)
T PRK14275 266 AQLFTN 271 (286)
T ss_pred HHHHhC
Confidence 988654
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=326.92 Aligned_cols=204 Identities=27% Similarity=0.412 Sum_probs=172.2
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g---------- 658 (1361)
.++++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 469999999999999999999999999999999999864 4899998766
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|+||++++++.|++||+.++.. .++ +++.+.++.+++.+++..+ .++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 3899999999888899999987521 122 3455667777776544321 2366789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL-KEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQ 231 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999987765544 457899999999999876 79999999999999999998
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14266 232 IFIN 235 (250)
T ss_pred HHhC
Confidence 8644
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=327.91 Aligned_cols=199 Identities=27% Similarity=0.353 Sum_probs=168.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC--------CcEEEEcC--------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI--------SGTVNLYG-------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~--------~G~v~~~g-------- 658 (1361)
++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 678999999964 36999999999999999999999999999999999999998 99999887
Q ss_pred -----eEEEEecCCc-CCCCCHHHHhhcCCC-C----------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 659 -----SIAYVSQTSW-IQSGSIRDNILYGKP-M----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 659 -----~iayv~Q~~~-i~~~ti~eni~~g~~-~----------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
.++|++|++. ++..|++||+.++.. . +.++.+++++..++... .+....+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATAL-----------VGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCC
Confidence 2799999975 567899999987531 1 11234555555555432 335678999
Q ss_pred hHHHHHHHHHHHHc---------cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEE
Q 000671 722 GGQKQRIQLARAVY---------NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILV 790 (1361)
Q Consensus 722 gGQkqRv~lARal~---------~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~ 790 (1361)
||||||++||||++ .+|+++||||||++||+.+.+.+.+.+.+...+ ++|+|++||+++.+.. ||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 599999999999999999999998766654444 7999999999999865 899999
Q ss_pred EeCCeEEEecChHHHHh
Q 000671 791 LEGGQITQSGNYQELLL 807 (1361)
Q Consensus 791 l~~G~i~~~g~~~~l~~ 807 (1361)
|++|++++.|+.+++..
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999988754
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=327.71 Aligned_cols=206 Identities=24% Similarity=0.361 Sum_probs=171.2
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC--------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g-------- 658 (1361)
+..++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+.++ ++|+|.++|
T Consensus 18 ~~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 18 HSVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 347999999999974 3589999999999999999999999999999999999863 689998765
Q ss_pred -------eEEEEecCCcCCCCCHHHHhhcCCC---CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -------~iayv~Q~~~i~~~ti~eni~~g~~---~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++.. +. ++...+.++.+++...+.. ...+.+.+||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~ 167 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQ 167 (274)
T ss_pred hhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHH
Confidence 4899999998887899999987532 11 2233445555665433321 23467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEe---------CCe
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE---------GGQ 795 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~---------~G~ 795 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|+ +|+
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~ 246 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL-KEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGK 246 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCce
Confidence 9999999999999999999999999999999988765544 457899999999999875 89999997 899
Q ss_pred EEEecChHHHHhc
Q 000671 796 ITQSGNYQELLLA 808 (1361)
Q Consensus 796 i~~~g~~~~l~~~ 808 (1361)
+++.|+.+++..+
T Consensus 247 ~~~~g~~~~~~~~ 259 (274)
T PRK14265 247 LVEFSPTEQMFGS 259 (274)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999998654
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=319.44 Aligned_cols=437 Identities=18% Similarity=0.259 Sum_probs=302.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC-----CCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHH
Q 000671 339 FFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKK-----HSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVL 412 (1361)
Q Consensus 339 ~~~~~~~~~riR~~l~~~Iy~K~L~ls~~~~~~-----~~~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~va~~~L 412 (1361)
.|..+++.++.|..|+.....|=|.-...-+-. +..-..=..+..|+..+.+... ....+....++++.-..+|
T Consensus 107 ~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iL 186 (604)
T COG4178 107 TWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGIL 186 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999988755321110 1111123577888877766432 2333444445555555667
Q ss_pred HHHHHHHH---------HHHHH--HHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHhhHHHHHHhchHH
Q 000671 413 FGVVGLGA---------LPGLV--LFLICGLLNVPFAKILQ----KCQS-EFMIAQDERLRSTSEILNNMKIIKLQSWEE 476 (1361)
Q Consensus 413 ~~~lG~~~---------l~gl~--v~~l~~~l~~~~~~~~~----~~q~-~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~ 476 (1361)
|...|.-+ ++|.. ++++.+++...++-++. +... +....-|-|-.++ .+..+...|-+|.-|+
T Consensus 187 w~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lv-rv~enaE~IAly~GE~ 265 (604)
T COG4178 187 WSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLV-RVRENAEAIALYRGEK 265 (604)
T ss_pred HHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHH-HHHhhHHHHHHhcCcH
Confidence 75554221 22222 22223333333332222 2211 1222234455443 4667888899999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Q 000671 477 KFKSLIESRREKEFKWLSEAQL----RKAYGTVIYW---MSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPV 549 (1361)
Q Consensus 477 ~f~~~i~~~R~~El~~l~~~~~----~~~~~~~~~~---~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl 549 (1361)
.-.+++++.=..=++..++... ...++....+ ..|.++.+-- ++ .+.++-+...++-..|+.+...+
T Consensus 266 ~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~-----~f-~g~i~~G~lmqa~~aF~~v~ssl 339 (604)
T COG4178 266 VERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPR-----YF-SGQITFGGLMQAVGAFGQVHSSL 339 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHh-----hh-cCcChHHHHHHHHHHHHHHHHHH
Confidence 6655554422221222121110 0111111111 2222222211 22 36899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC---CCCc---h-hhhc--cccCCCCcEEEEeeEEEeCCCCCCCcccceeEEe
Q 000671 550 RMIPEALSIMIQVKVSFDRINAFLLDHE---LNND---D-VRRI--SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620 (1361)
Q Consensus 550 ~~lp~~i~~~~~a~vS~~RI~~fL~~~e---~~~~---~-~~~~--~~~~~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i 620 (1361)
+.+-..+..+.+=+.++.|+.+|-.+=| .++. + ..+. .... +..|.++|++..-+.+. +.+++.|+++
T Consensus 340 swfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~nl~l~~p~~~--~ll~~l~~~v 416 (604)
T COG4178 340 SWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNA-DHGITLENLSLRTPDGQ--TLLSELNFEV 416 (604)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccc-cceeEEeeeeEECCCCC--eeeccceeee
Confidence 9999999999999999999999974322 1110 0 0000 0111 57899999999987653 7899999999
Q ss_pred cCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCCCCCHHHHhhcCCC---CCHHHHHHHHHH
Q 000671 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGKP---MDKARYDKAIKA 695 (1361)
Q Consensus 621 ~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~~~ti~eni~~g~~---~~~~~~~~~~~~ 695 (1361)
++||.+.|.|+||||||||+++|.|+.|--+|+|.... .+-|+||.|.++.+|.||-|.+... ++++.+.+++.+
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~ 496 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHK 496 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999998873 4899999999999999999999753 678999999999
Q ss_pred hcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEE
Q 000671 696 CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775 (1361)
Q Consensus 696 ~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilv 775 (1361)
|+|.+-.+.+.+-+. -...||+|||||+++||.++++|++++|||.|||||+.++..+++.+ +..+.+.|+|-|
T Consensus 497 vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l-~~~lp~~tvISV 570 (604)
T COG4178 497 VGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLL-KEELPDATVISV 570 (604)
T ss_pred cCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHH-HhhCCCCEEEEe
Confidence 999988888765443 34689999999999999999999999999999999999999998754 555688999999
Q ss_pred ccCchHHhhcCeEEEE
Q 000671 776 THQVEFLSEVDRILVL 791 (1361)
Q Consensus 776 tH~~~~l~~~d~i~~l 791 (1361)
.|+.......++.+-+
T Consensus 571 ~Hr~tl~~~h~~~l~l 586 (604)
T COG4178 571 GHRPTLWNFHSRQLEL 586 (604)
T ss_pred ccchhhHHHHhhheee
Confidence 9998877666655544
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=328.12 Aligned_cols=209 Identities=25% Similarity=0.373 Sum_probs=170.9
Q ss_pred cEEEEeeEEEeCCC------CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000671 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------- 658 (1361)
.++++|+++.|+.. .++++++|+||++++||+++|+|+||||||||+++|.|+.+|++|+|.++|
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 37899999999731 125699999999999999999999999999999999999999999998876
Q ss_pred -------eEEEEecCCc--C-CCCCHHHHhhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 659 -------SIAYVSQTSW--I-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 659 -------~iayv~Q~~~--i-~~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
.++|++|++. + .+.|++||+.+.. ..+. ++.++.++.+++..++ .+.++.+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSV----------LDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhH----------hhCCCccC
Confidence 3899999983 3 4579999986531 1121 2345566655553221 23567899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
|||||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||++++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999998876554443 38899999999999976 89999999999999
Q ss_pred ecChHHHHhcCchH
Q 000671 799 SGNYQELLLAGTAF 812 (1361)
Q Consensus 799 ~g~~~~l~~~~~~~ 812 (1361)
.|+++++......+
T Consensus 233 ~g~~~~~~~~~~~~ 246 (268)
T PRK10419 233 TQPVGDKLTFSSPA 246 (268)
T ss_pred eCChhhccCCCCHH
Confidence 99999987544433
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=325.83 Aligned_cols=205 Identities=25% Similarity=0.358 Sum_probs=174.5
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g--------- 658 (1361)
..+.+++.++.|.+ .++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 7 ~~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 83 (261)
T PRK14263 7 IVMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 (261)
T ss_pred ceEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccc
Confidence 46788899999864 3699999999999999999999999999999999999986 799998876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCC---CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~---~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
.++|++|++.+++.|++||+.++.. +. .++..++++..++..++.. ..++++.+|||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~q 156 (261)
T PRK14263 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQ 156 (261)
T ss_pred hHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 2899999999888999999988642 11 2456667777776554432 124677899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEe--------CCeEE
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE--------GGQIT 797 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~--------~G~i~ 797 (1361)
|++||||++++|++++|||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||+|++|+ +|+++
T Consensus 157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL-KKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 999999999999999999999999999999998766554 457899999999998865 89999996 89999
Q ss_pred EecChHHHHhc
Q 000671 798 QSGNYQELLLA 808 (1361)
Q Consensus 798 ~~g~~~~l~~~ 808 (1361)
+.|+.+++.+.
T Consensus 236 ~~g~~~~~~~~ 246 (261)
T PRK14263 236 EMGPTAQIFQN 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999998753
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=340.12 Aligned_cols=195 Identities=24% Similarity=0.389 Sum_probs=165.7
Q ss_pred eeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEE
Q 000671 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIA 661 (1361)
Q Consensus 599 ~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------------~ia 661 (1361)
|++++|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 4 ~l~~~~~~~----~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDF----SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCE----EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 678888632 35 99999999999999999999999999999999999999998765 289
Q ss_pred EEecCCcCCC-CCHHHHhhcCCCC-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 662 YVSQTSWIQS-GSIRDNILYGKPM-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 662 yv~Q~~~i~~-~ti~eni~~g~~~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
|++|++.++. .|++||+.|+... . .++.+++++..++...++ .++.+||||||||++||||++
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG-----------RLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 9999998765 6999999986431 1 234566666666654333 566799999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
.+|+++||||||++||+...+.+.+.+.....+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 999999999999999999999998876655444 8999999999999865 8999999999999999999987653
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=326.55 Aligned_cols=204 Identities=25% Similarity=0.394 Sum_probs=167.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-----~~G~v~~~g---------- 658 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 5889999999964 3589999999999999999999999999999999999974 799998865
Q ss_pred -----eEEEEecCCcCCC-CCHHHHhhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHH
Q 000671 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~-~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQ 724 (1361)
.++|++|++.++. .|++||+.++.. ... ++..++++..++...+. ......+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 3899999987765 699999986421 111 23445555555532221 12236678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEe------CCeEE
Q 000671 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE------GGQIT 797 (1361)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~------~G~i~ 797 (1361)
|||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|+ +|+|+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL-KQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 99999999999999999999999999999999987665444 456899999999999865 89999996 89999
Q ss_pred EecChHHHHhc
Q 000671 798 QSGNYQELLLA 808 (1361)
Q Consensus 798 ~~g~~~~l~~~ 808 (1361)
+.|+++++...
T Consensus 233 ~~~~~~~~~~~ 243 (258)
T PRK14241 233 EIDDTEKIFSN 243 (258)
T ss_pred ecCCHHHHHhC
Confidence 99999988653
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=332.50 Aligned_cols=205 Identities=27% Similarity=0.445 Sum_probs=171.0
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-----~~~G~v~~~g--------- 658 (1361)
..+.++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999974 369999999999999999999999999999999999986 6899998865
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCCC--------------------CHHHHHHHHHHhcchHHHhcCCCCCCcc
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM--------------------DKARYDKAIKACALDKDINNFDHGDLTE 712 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~~--------------------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ 712 (1361)
.++|++|++.+++.|++||+.++... ..++..++++.+++..++. +.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-------DR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh-------HH
Confidence 38999999998888999999975311 0223455556565543332 23
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeE-EE
Q 000671 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRI-LV 790 (1361)
Q Consensus 713 ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i-~~ 790 (1361)
.++++.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++ ++
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~-~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEEL-AEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 45678899999999999999999999999999999999999999987765543 345899999999999876 8997 56
Q ss_pred EeCCeEEEecChHHHHhc
Q 000671 791 LEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 791 l~~G~i~~~g~~~~l~~~ 808 (1361)
|++|++++.|+++++.+.
T Consensus 273 l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 273 LTGGELVEYDDTDKIFEN 290 (305)
T ss_pred ecCCEEEEeCCHHHHHhC
Confidence 799999999999988643
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=320.24 Aligned_cols=196 Identities=30% Similarity=0.445 Sum_probs=159.0
Q ss_pred cEEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc---CCCcEEEEcC----------e
Q 000671 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG----------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~---~~~G~v~~~g----------~ 659 (1361)
.+.++|+++.++... .+++++|+||++++||+++|+||||||||||+++|.|+++ |++|+|.++| .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 357899999997542 3579999999999999999999999999999999999999 9999999877 3
Q ss_pred EEEEecCCcCCCC-CHHHHhhcCCCC------CHH----HHHH-HHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 660 IAYVSQTSWIQSG-SIRDNILYGKPM------DKA----RYDK-AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 660 iayv~Q~~~i~~~-ti~eni~~g~~~------~~~----~~~~-~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
++|++|++.+++. |++||+.++... .++ +..+ .++.+++.. ...+...+||||||||
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qr 151 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR-----------IGGNLVKGISGGERRR 151 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh-----------hhcccccCcCHHHHHH
Confidence 9999999987764 999999874211 111 1111 222222221 1224668999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCc-hHHh-hcCeEEEEeCCeEEEec
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV-EFLS-EVDRILVLEGGQITQSG 800 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~-~~l~-~~d~i~~l~~G~i~~~g 800 (1361)
++||||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||++ +.+. .||++++|++|++++.|
T Consensus 152 l~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 152 VSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999998876655444688999999998 4554 58999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=324.65 Aligned_cols=204 Identities=26% Similarity=0.382 Sum_probs=166.2
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC-----CcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~-----~G~v~~~g---------- 658 (1361)
.++++|++++|+. .++++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 36999999999999999999999999999999999999864 89998865
Q ss_pred -----eEEEEecCCcCCC-CCHHHHhhcCCC---C-CHHH----HHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHH
Q 000671 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP---M-DKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~-~ti~eni~~g~~---~-~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQ 724 (1361)
.++|++|++.++. .|++||+.++.. . .++. ..+.++..++...+.. .....+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKD-------RLKTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhh-------hhcCCcccCCHHH
Confidence 3899999988766 699999986432 1 2222 2223333333222211 1235678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChH
Q 000671 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1361)
|||++||||++++|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL-KKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTD 232 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988765443 457999999999999886 8999999999999999999
Q ss_pred HHHhc
Q 000671 804 ELLLA 808 (1361)
Q Consensus 804 ~l~~~ 808 (1361)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14272 233 QLFTN 237 (252)
T ss_pred HHHhC
Confidence 88654
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=325.90 Aligned_cols=205 Identities=25% Similarity=0.408 Sum_probs=171.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC-----CcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~-----~G~v~~~g---------- 658 (1361)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|
T Consensus 7 ~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 7 AIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred eEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 6899999999964 35899999999999999999999999999999999999985 79887654
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++.. . . .++..++++..++...+.. ..++.+.+||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 3899999988877999999986421 1 1 1234556666665433321 23467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeC-----CeEEE
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEG-----GQITQ 798 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~-----G~i~~ 798 (1361)
||++||||++++|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.+.. ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 999999999999999999999999999999998876655433 48999999999999876 899999999 99999
Q ss_pred ecChHHHHhc
Q 000671 799 SGNYQELLLA 808 (1361)
Q Consensus 799 ~g~~~~l~~~ 808 (1361)
.|+++++.+.
T Consensus 237 ~~~~~~~~~~ 246 (261)
T PRK14258 237 FGLTKKIFNS 246 (261)
T ss_pred eCCHHHHHhC
Confidence 9999998654
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=324.02 Aligned_cols=204 Identities=27% Similarity=0.429 Sum_probs=167.4
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc--C---CCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~--~---~~G~v~~~g---------- 658 (1361)
.++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 5889999999974 369999999999999999999999999999999999865 4 589998765
Q ss_pred -----eEEEEecCCcCCCCCHHHHhhcCCC---C-CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~~ti~eni~~g~~---~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
.++|++|++.+++.|++||+.++.. . .+ ++..+.++.+++...+. ......+.+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 3899999998888999999987521 1 11 22333444444432221 123466789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+++.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL-RDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-HhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987765544 346899999999999875 89999999999999999888
Q ss_pred HHhc
Q 000671 805 LLLA 808 (1361)
Q Consensus 805 l~~~ 808 (1361)
...+
T Consensus 234 ~~~~ 237 (252)
T PRK14255 234 MFLN 237 (252)
T ss_pred HhcC
Confidence 7644
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=303.09 Aligned_cols=202 Identities=23% Similarity=0.378 Sum_probs=168.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.+..+|...+|.. +++.+++||++++||+|++.||||+||||.+.++.|+.+|++|+|.+++ .
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 4677888888975 4699999999999999999999999999999999999999999999987 3
Q ss_pred EEEEecCCcCCC-CCHHHHhhcCCCC---CHH------HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 660 IAYVSQTSWIQS-GSIRDNILYGKPM---DKA------RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 660 iayv~Q~~~i~~-~ti~eni~~g~~~---~~~------~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
|||+||+|.+|. .||+|||..-.++ +.+ +.++.++...+..-- ..++.+||||||+|+.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr-----------~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR-----------DSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHh-----------cCcccccccchHHHHH
Confidence 999999999985 5999999754332 111 223344444333221 2678999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCch-HHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE-FLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~-~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|||||..+|+.+||||||+|+||.....|-+.+.....+|--|+++-|++. .+.-|||.+++.+|++..+|+++|+.++
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 999999999999999999999999999986544444457889999999986 4777999999999999999999999865
Q ss_pred C
Q 000671 809 G 809 (1361)
Q Consensus 809 ~ 809 (1361)
.
T Consensus 230 ~ 230 (243)
T COG1137 230 E 230 (243)
T ss_pred h
Confidence 3
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=318.24 Aligned_cols=191 Identities=27% Similarity=0.420 Sum_probs=162.0
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
++++|+++.|+++. ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999996432 24699999999999999999999999999999999999999999998875
Q ss_pred -eEEEEecCCcCCC-CCHHHHhhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHH
Q 000671 659 -SIAYVSQTSWIQS-GSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 659 -~iayv~Q~~~i~~-~ti~eni~~g~~----~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1361)
.++|++|++.++. .|+.||+.++.. .+ .+++.++++.+++.+.++ ..+.+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLD-----------YYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHH
Confidence 3899999997765 799999987532 22 234566777777765444 45568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEEeCCeE
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1361)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1361)
+||||++.+|+++|||||+++||+.+++.+.+.+..... +++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999998876554433 48999999999997767999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=317.00 Aligned_cols=185 Identities=31% Similarity=0.439 Sum_probs=156.7
Q ss_pred eeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEE
Q 000671 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIA 661 (1361)
Q Consensus 599 ~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------------~ia 661 (1361)
|++++|++. .+ |+||++++ |+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 5 ~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 788888753 23 99999999 99999999999999999999999999999998865 389
Q ss_pred EEecCCcCC-CCCHHHHhhcCCCC-----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 662 YVSQTSWIQ-SGSIRDNILYGKPM-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 662 yv~Q~~~i~-~~ti~eni~~g~~~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
|++|++.++ +.|++||+.++... ++++..+.++..++....+ .++.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-----------RYPAQLSGGEKQRVALARALA 147 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-----------cCcccCCHHHHHHHHHHHHHh
Confidence 999999876 56999999875421 1234566666666654332 567899999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
.+|++++|||||++||+.+.+.+++.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999988766554444 8899999999999865 8999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=310.05 Aligned_cols=174 Identities=26% Similarity=0.428 Sum_probs=151.3
Q ss_pred cEEEEeeEEEeCCC---CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCc--cCCCcEEEEcC----------
Q 000671 594 SVKIQEGNFSWDPE---LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG---------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~---~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~--~~~~G~v~~~g---------- 658 (1361)
.++++|++++|+.. ...++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 48899999999752 1246999999999999999999999999999999999999 99999998876
Q ss_pred eEEEEecCCcCCC-CCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 000671 659 SIAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1361)
Q Consensus 659 ~iayv~Q~~~i~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1361)
.++|++|++.++. .|++||+.++... . .||||||||++||||++.+
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~------------------~---------------~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKL------------------R---------------GLSGGERKRVSIALELVSN 129 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHh------------------c---------------cCCHHHHHHHHHHHHHHcC
Confidence 4899999987764 6999999753210 0 7999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCch-HHhh-cCeEEEEeCCeEEEec
Q 000671 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE-FLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~-~l~~-~d~i~~l~~G~i~~~g 800 (1361)
|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++ .+.. +|++++|++|++++.|
T Consensus 130 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999988766554446899999999996 5654 8999999999998654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=321.83 Aligned_cols=202 Identities=24% Similarity=0.320 Sum_probs=165.2
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
.++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 5889999999964 3589999999999999999999999999999999999999999998864
Q ss_pred -------eEEEEecCCc--C-CCCCHHHHhhcC-----CC-CC--HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 659 -------SIAYVSQTSW--I-QSGSIRDNILYG-----KP-MD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 659 -------~iayv~Q~~~--i-~~~ti~eni~~g-----~~-~~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
.++|++|++. + ...|+.+|+.+. .. .. .++..+.++..++.. +.....+.+|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~L 149 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAF 149 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhc
Confidence 2799999974 2 346889998542 11 11 122333344333321 2234677899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
|||||||++||||++++|+++||||||++||+.+.+.+.+.+..... .+.|+|++||+++.+.. +|++++|++|++++
T Consensus 150 SgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~ 229 (253)
T TIGR02323 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999998876655443 48999999999999875 89999999999999
Q ss_pred ecChHHHHhc
Q 000671 799 SGNYQELLLA 808 (1361)
Q Consensus 799 ~g~~~~l~~~ 808 (1361)
.|+.+++..+
T Consensus 230 ~~~~~~~~~~ 239 (253)
T TIGR02323 230 SGLTDQVLDD 239 (253)
T ss_pred ECCHHHHhcC
Confidence 9999888643
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=317.59 Aligned_cols=189 Identities=24% Similarity=0.371 Sum_probs=157.1
Q ss_pred cccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC----CCcEEEEcC-----------eEEEEecCCc-CC--CCC
Q 000671 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYG-----------SIAYVSQTSW-IQ--SGS 673 (1361)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~----~~G~v~~~g-----------~iayv~Q~~~-i~--~~t 673 (1361)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++. .+ ..|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 47899999999999999999999999999999999999 899999876 4999999985 23 369
Q ss_pred HHHHhhcCCC----CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000671 674 IRDNILYGKP----MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1361)
Q Consensus 674 i~eni~~g~~----~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1361)
++||+.+... .. .+++.+.++.+++.+ + .+.....+.+||||||||++||||++++|+++|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999865321 11 234556666666641 1 0123466789999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 747 FSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 747 ~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|++||+.+.+.+.+.+.+... .++|+|++||+++.+.. +|++++|++|++.+.|+++++...
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999998876655444 37899999999999875 899999999999999999998754
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=310.45 Aligned_cols=180 Identities=22% Similarity=0.308 Sum_probs=151.3
Q ss_pred cEEEEeeEEEeCCC-CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc---CCCcEEEEcC-----------
Q 000671 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG----------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~---~~~G~v~~~g----------- 658 (1361)
.+.++|++|.|+.. .+.++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 36899999999864 34579999999999999999999999999999999999999 8999998876
Q ss_pred -eEEEEecCCcCCC-CCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHcc
Q 000671 659 -SIAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1361)
Q Consensus 659 -~iayv~Q~~~i~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~ 736 (1361)
.++|++|++.++. .|++||+.++.... ..++...||||||||++||||+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 3899999987665 69999998753210 124567899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcc-CchHHh-hcCeEEEEeCCeEEEec
Q 000671 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTH-QVEFLS-EVDRILVLEGGQITQSG 800 (1361)
Q Consensus 737 ~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH-~~~~l~-~~d~i~~l~~G~i~~~g 800 (1361)
+|+++||||||++||+.+++.+.+.+.....+ +.|+|+++| +.+.+. .||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999988766554443 567666655 556665 58999999999998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=303.29 Aligned_cols=159 Identities=28% Similarity=0.500 Sum_probs=144.4
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEE
Confidence 468899999964 3589999999999999999999999999999999999999999998876 3899
Q ss_pred EecCCcCCC-CCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 000671 663 VSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1361)
Q Consensus 663 v~Q~~~i~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1361)
++|++.++. .|++||+. ||||||||++||||++.+|+++
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 999988765 59999984 9999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeE
Q 000671 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1361)
Q Consensus 742 lLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1361)
||||||++||+.+.+.+.+.+.....+|.|+|++||+.+++.. ||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999988766555568899999999999885 899999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=336.63 Aligned_cols=206 Identities=22% Similarity=0.240 Sum_probs=172.9
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcC-CC
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI-QS 671 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i-~~ 671 (1361)
..++++|++|.|+.+...++|+|+||++++|++++|+|+||||||||+++|+|+.+|++|+|.++|.-.++++.+.+ ..
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~ 99 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCC
Confidence 35889999999976544579999999999999999999999999999999999999999999999976666666544 45
Q ss_pred CCHHHHhhcCC---CCCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 000671 672 GSIRDNILYGK---PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1361)
Q Consensus 672 ~ti~eni~~g~---~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLD 744 (1361)
.|++||+.++. ..+.+ +..++++.+++.+.++ .++.+||||||||++||||++.+|+++|||
T Consensus 100 lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-----------~~~~~LSGGQrQRVaLArAL~~~P~LLLLD 168 (549)
T PRK13545 100 LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-----------QPVKTYSSGMKSRLGFAISVHINPDILVID 168 (549)
T ss_pred CcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 69999997642 22222 2345666666654443 456789999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 745 ep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
|||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++....
T Consensus 169 EPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 169 EALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 9999999999999887665544468999999999999876 8999999999999999999987643
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=317.89 Aligned_cols=182 Identities=35% Similarity=0.459 Sum_probs=153.6
Q ss_pred ccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------EEEEecCCcCCC-CCHHHHhhcCC-
Q 000671 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWIQS-GSIRDNILYGK- 682 (1361)
Q Consensus 613 L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~--------iayv~Q~~~i~~-~ti~eni~~g~- 682 (1361)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. .+|++|++.++. .|++||+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999873 589999987765 79999998641
Q ss_pred ----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHH
Q 000671 683 ----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1361)
Q Consensus 683 ----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~ 754 (1361)
..++ ++..+.++.+++.+.++ ..+.+||||||||++||||++.+|+++||||||++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 149 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAAD-----------KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHc-----------CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 1222 23456667666654333 4567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 755 AATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 755 ~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
.+.+.+.+.+... .|+|+|++||+++.+.. ||+|++|++|++++.|+..++
T Consensus 150 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 150 RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9999876655444 38899999999998865 899999999999988765443
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=284.95 Aligned_cols=194 Identities=27% Similarity=0.417 Sum_probs=167.2
Q ss_pred cEEEEeeEEEeCCC-CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
.|++++++.+-... .+..+|++++|.|++||.++||||+||||||||..+.|+.+|++|+|.+.|
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 46777777666543 235689999999999999999999999999999999999999999999866
Q ss_pred ---eEEEEecCC-cCCCCCHHHHhhcCCCCC-------HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 ---SIAYVSQTS-WIQSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 ---~iayv~Q~~-~i~~~ti~eni~~g~~~~-------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
++|+|+|.. .|+|.|..||+....+.. .+...+.+++.+|.+-+... +.+||||++||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~Hy-----------P~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHY-----------PAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccC-----------ccccCchHHHH
Confidence 599999985 568999999998754321 23466778888887666544 56899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhhcCeEEEEeCCeEEE
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~ 798 (1361)
|+||||+..+|+|++-||||-+||..++++|.+.++... ..|.|.|+||||......|||++-|++|+|++
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999998877654 36899999999999999999999999999975
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=307.64 Aligned_cols=174 Identities=22% Similarity=0.335 Sum_probs=150.6
Q ss_pred cEEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCc--cCCCcEEEEcC---------eEE
Q 000671 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG---------SIA 661 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~--~~~~G~v~~~g---------~ia 661 (1361)
.++++|+++.|++.. +.++|+|+||++++||+++|+|+||||||||+++|+|.. +|++|+|.++| .++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 578999999997521 246999999999999999999999999999999999986 48999999876 489
Q ss_pred EEecCCcCCC-CCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 662 YVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 662 yv~Q~~~i~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
|++|++.++. .|++||+.++.. ++ +||||||||++||||++.+|++
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~~~p~v 129 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELAAKPSI 129 (192)
T ss_pred EecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHhcCCcE
Confidence 9999987655 699999986320 00 7999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchH-H-hhcCeEEEEeC-CeEEEec
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-L-SEVDRILVLEG-GQITQSG 800 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l-~~~d~i~~l~~-G~i~~~g 800 (1361)
++|||||++||+.+.+.+++.+.....+++|+|++||+++. + ..||++++|++ |++++.|
T Consensus 130 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 130 LFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999988665544458999999999984 4 55899999999 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=334.86 Aligned_cols=215 Identities=21% Similarity=0.371 Sum_probs=179.8
Q ss_pred CCcEEEEeeEEEeCCC--------CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000671 592 DRSVKIQEGNFSWDPE--------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~--------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----- 658 (1361)
+..++++|++..|... ....+++||||++++||+++|||+||||||||.++|+|+.+|++|+|.++|
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 3457799999999842 234689999999999999999999999999999999999999999999876
Q ss_pred ----------eEEEEecCCcC---CCCCHHHHhhcCC----CC----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCC
Q 000671 659 ----------SIAYVSQTSWI---QSGSIRDNILYGK----PM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1361)
Q Consensus 659 ----------~iayv~Q~~~i---~~~ti~eni~~g~----~~----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g 717 (1361)
++-+++|+|.- +..||+++|.... .. .+++..+.++..+|.+++ ...++
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~----------l~ryP 427 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF----------LDRYP 427 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHH----------HhcCc
Confidence 47899999853 5679999996432 11 123566668888887542 23678
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCe
Q 000671 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1361)
Q Consensus 718 ~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1361)
.+|||||||||+|||||..+|+++++|||+||||+.++.++.+.+.+...+ |-|.|+||||+.++++ ||||+||++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 899999999999999999999999999999999999999999876655443 8899999999999987 89999999999
Q ss_pred EEEecChHHHHhcC-chHHHHH
Q 000671 796 ITQSGNYQELLLAG-TAFEQLV 816 (1361)
Q Consensus 796 i~~~g~~~~l~~~~-~~~~~~~ 816 (1361)
|+|.|+.+++.+.. ..|.+.+
T Consensus 508 iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 508 IVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred EEEeCCHHHHhcCCCChHHHHH
Confidence 99999999988763 3454433
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=289.96 Aligned_cols=196 Identities=27% Similarity=0.393 Sum_probs=161.2
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------EEEEecC
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQT 666 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~--------iayv~Q~ 666 (1361)
..+++.+.+|+..+ .++|+|+|++|.+||+++++||+||||||||+.++|+++|..|+|.++|+ -|.|+|+
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 34567888888654 56999999999999999999999999999999999999999999999874 7999999
Q ss_pred CcC-CCCCHHHHhhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 000671 667 SWI-QSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 667 ~~i-~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1361)
+-+ +..++.||+.||.. .++. ...+.+...+|.+. + .....+||||||||+.|||||..+|
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~-------~----~~~i~qLSGGmrQRvGiARALa~eP 151 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGA-------E----HKYIWQLSGGMRQRVGIARALAVEP 151 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccc-------c----ccceEeecchHHHHHHHHHHhhcCc
Confidence 754 67899999999864 3332 23333444444321 1 1456789999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHH-hhcCeEEEEe--CCeEEEecCh
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLE--GGQITQSGNY 802 (1361)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~--~G~i~~~g~~ 802 (1361)
+.++||||++|||+-+++++-+.++..+. .||.+++|||++++. --+++++||. .|+|++.-++
T Consensus 152 ~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 152 QLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred ceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 99999999999999999998766666554 599999999999875 4589999996 6899876443
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=312.00 Aligned_cols=181 Identities=28% Similarity=0.412 Sum_probs=152.6
Q ss_pred EEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------e
Q 000671 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------S 659 (1361)
Q Consensus 597 ~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------------~ 659 (1361)
++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4688999963 3699999999999999999999999999999999999999999998765 3
Q ss_pred EEEEecCCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 660 IAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 660 iayv~Q~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
++|++|++.++. .|++||+.++.. .. .+++.++++..++....+ .+..+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-----------QKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc-----------CChhhCCHHHHHHHHHH
Confidence 899999998765 799999987432 11 234556666666654332 45678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEE
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1361)
||++++|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+..||++++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999999998876655444589999999999988779999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=318.25 Aligned_cols=205 Identities=22% Similarity=0.334 Sum_probs=167.9
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
..+.++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 46899999999964 3689999999999999999999999999999999999999997765543
Q ss_pred -----eEEEEecCCcCCC-CCHHHHhhcCCC---C-CHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHH
Q 000671 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP---M-DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1361)
Q Consensus 659 -----~iayv~Q~~~i~~-~ti~eni~~g~~---~-~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQ 724 (1361)
.++|++|+|.++. .|++||+.++.. . .++ +..++++..++.+.+. ...++.+..|||||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~ 158 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQ 158 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHH
Confidence 3899999998775 599999987521 1 222 2334444444432110 12345778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChH
Q 000671 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1361)
|||++||||++++|++++|||||++||+.+.+.+.+.+.+. .++.|+|++||+++++.. ||++++|++|++++.|+.+
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~ 237 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL-KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSN 237 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999987665433 456899999999999865 8999999999999999999
Q ss_pred HHHhc
Q 000671 804 ELLLA 808 (1361)
Q Consensus 804 ~l~~~ 808 (1361)
++.+.
T Consensus 238 ~~~~~ 242 (257)
T PRK14246 238 EIFTS 242 (257)
T ss_pred HHHhC
Confidence 88754
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=304.77 Aligned_cols=160 Identities=29% Similarity=0.488 Sum_probs=144.3
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|++++| +++|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48899999987 79999999999999999999999999999999999999999998876 4
Q ss_pred EEEEecCC----cCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 660 IAYVSQTS----WIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 660 iayv~Q~~----~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
++|++|++ ..++.|++||+.++.. ||||||||++||||++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHc
Confidence 89999985 3456899999987421 9999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeE
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1361)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1361)
.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999887665544458999999999998877 899999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=316.93 Aligned_cols=193 Identities=25% Similarity=0.406 Sum_probs=161.4
Q ss_pred EEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEE
Q 000671 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAY 662 (1361)
Q Consensus 596 ~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~iay 662 (1361)
+++|+++. .+|+|+||++++||+++|+|+||||||||+++|+|..++ +|+|.++| .++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 45666663 179999999999999999999999999999999999864 99999876 2899
Q ss_pred EecCCc-CCCCCHHHHhhcCCCC--C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 663 VSQTSW-IQSGSIRDNILYGKPM--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 663 v~Q~~~-i~~~ti~eni~~g~~~--~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
++|++. .++.|++||+.++... + .++.+++++.+++.+.++ ..+..||||||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-----------RSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHh
Confidence 999974 5678999999986432 1 234566777776654332 456789999999999999999
Q ss_pred c-------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 736 N-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 736 ~-------~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
+ +|+++||||||++||+...+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 8 679999999999999999999887665544468999999999998765 89999999999999999988754
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=292.38 Aligned_cols=204 Identities=28% Similarity=0.417 Sum_probs=169.3
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
|+.+|++++-.. +.+|++++|++++||.++|+||||+||||||++|.||+.|++|++.++| .-|
T Consensus 2 i~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 567888887654 4589999999999999999999999999999999999999999999988 368
Q ss_pred EEecCCcC-CCCCHHHHhhcCCC-C----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc
Q 000671 662 YVSQTSWI-QSGSIRDNILYGKP-M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 662 yv~Q~~~i-~~~ti~eni~~g~~-~----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1361)
.+||+..+ |.-||+|-+.+|.- . +.++-.++.++|-...|+..+.. ....+||||+||||.|||.|.
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-------R~y~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-------RDYRTLSGGEQQRVQLARVLA 151 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-------cchhhcCchHHHHHHHHHHHH
Confidence 99999765 89999999999852 2 11122333333333334444433 334579999999999999998
Q ss_pred c------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 736 N------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 736 ~------~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
+ ++++++||||||+||...+.++++.......+|..|+.|-||++.... ||+|++|.+||++..|++++.+..
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH
Confidence 6 456999999999999999999998877777788999999999998765 899999999999999999998754
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=356.36 Aligned_cols=205 Identities=20% Similarity=0.303 Sum_probs=173.0
Q ss_pred CcEEEEeeEEEeCCC--------CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000671 593 RSVKIQEGNFSWDPE--------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~--------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------ 658 (1361)
..++++|+++.|+.. ....+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 358999999999631 123689999999999999999999999999999999999999999999876
Q ss_pred ----------eEEEEecCCc--C-CCCCHHHHhhcCC---CC-C----HHHHHHHHHHhcchH-HHhcCCCCCCccccCC
Q 000671 659 ----------SIAYVSQTSW--I-QSGSIRDNILYGK---PM-D----KARYDKAIKACALDK-DINNFDHGDLTEIGQR 716 (1361)
Q Consensus 659 ----------~iayv~Q~~~--i-~~~ti~eni~~g~---~~-~----~~~~~~~~~~~~l~~-dl~~l~~gd~t~ig~~ 716 (1361)
.|+|++|+|. + .+.||.||+.++. .. . .++..++++.++|.. ..+ ..
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~-----------~~ 460 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW-----------RY 460 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhh-----------CC
Confidence 3899999983 4 4679999997632 11 1 134566777777743 222 45
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCC
Q 000671 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGG 794 (1361)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1361)
..+|||||||||+||||++.+|+++||||||++||+.+.+.+.+.+.+...+ |+|+|+||||++.+.. ||+|++|++|
T Consensus 461 ~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G 540 (623)
T PRK10261 461 PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLG 540 (623)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 6789999999999999999999999999999999999999998776554443 8999999999999876 8999999999
Q ss_pred eEEEecChHHHHhc
Q 000671 795 QITQSGNYQELLLA 808 (1361)
Q Consensus 795 ~i~~~g~~~~l~~~ 808 (1361)
+|++.|+.+++..+
T Consensus 541 ~iv~~g~~~~i~~~ 554 (623)
T PRK10261 541 QIVEIGPRRAVFEN 554 (623)
T ss_pred EEEEecCHHHHhcC
Confidence 99999999998754
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=301.90 Aligned_cols=160 Identities=34% Similarity=0.464 Sum_probs=144.7
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------~ 659 (1361)
++++|++++|+. .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 468999999964 3699999999999999999999999999999999999999999998765 3
Q ss_pred EEEEecCCcCC-CCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 000671 660 IAYVSQTSWIQ-SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 660 iayv~Q~~~i~-~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1361)
++|++|+|.++ +.|++||+.+. ||||||||++||||++++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 89999998776 56999998764 9999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCe
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1361)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1361)
++++|||||++||+.+...+++.+.....+ ++|+|++||+++.+.. +|++++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999998776655445 7899999999999985 89999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=299.45 Aligned_cols=158 Identities=39% Similarity=0.646 Sum_probs=144.2
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
++++|+++.|+.. ..++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4689999999753 23689999999999999999999999999999999999999999999877 389
Q ss_pred EEecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 000671 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1361)
Q Consensus 662 yv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1361)
|++|++.+++.|++||+ ||||||||++||||++.+|+++
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988888999998 9999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCe
Q 000671 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1361)
Q Consensus 742 lLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1361)
||||||++||+.+.+.+.+.+... .+++|+|++||+++.++.||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999988765543 45799999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=315.42 Aligned_cols=198 Identities=22% Similarity=0.313 Sum_probs=162.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCC--ccCCCcEEEEcC-------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYG------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~--~~~~~G~v~~~g------------- 658 (1361)
.++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 5899999999963 3599999999999999999999999999999999998 579999998865
Q ss_pred -eEEEEecCCcCCC-CCHHHHhhcCCC----------CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCC-CCC
Q 000671 659 -SIAYVSQTSWIQS-GSIRDNILYGKP----------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL-NLS 721 (1361)
Q Consensus 659 -~iayv~Q~~~i~~-~ti~eni~~g~~----------~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~-~LS 721 (1361)
.++|++|++.++. .|+++|+.++.. .+ .+++.++++.+++.+.. .+.... .||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSF----------LSRNVNEGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhh----------hccccccCCC
Confidence 2789999987765 589999876421 01 12234455555553211 223444 599
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh--cCeEEEEeCCeEEEe
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE--VDRILVLEGGQITQS 799 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~ 799 (1361)
||||||++||||++++|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. +|++++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999887665544468999999999999875 799999999999999
Q ss_pred cChHH
Q 000671 800 GNYQE 804 (1361)
Q Consensus 800 g~~~~ 804 (1361)
|+++.
T Consensus 234 ~~~~~ 238 (252)
T CHL00131 234 GDAEL 238 (252)
T ss_pred cChhh
Confidence 98874
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=286.59 Aligned_cols=203 Identities=24% Similarity=0.398 Sum_probs=173.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
..++++|....|... .+|+++|++.++|+.+.|+|.+||||||+|++|.=+..|..|.|.++|
T Consensus 5 ~~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 5 NALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred cceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 468888999998753 489999999999999999999999999999999999999999999876
Q ss_pred ------------eEEEEecCCcCC-CCCHHHHhhc------CCCCC--HHHHHHHHHHhcchHHHhcCCCCCCccccCCC
Q 000671 659 ------------SIAYVSQTSWIQ-SGSIRDNILY------GKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1361)
Q Consensus 659 ------------~iayv~Q~~~i~-~~ti~eni~~------g~~~~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g 717 (1361)
+.++|+|+-.++ .+||.||+.- |.+-+ .++.+..+...++.+.-+ ..+
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-----------~YP 150 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-----------AYP 150 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-----------cCc
Confidence 379999998775 4699999964 33222 244555666677765443 456
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeE
Q 000671 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1361)
Q Consensus 718 ~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1361)
..|||||+||++|||||..+|+++|+|||||||||+-.-++.+.+.....+|+|.++|||.+.+.++ +.+|+.+++|.|
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 7899999999999999999999999999999999999888876555566789999999999999998 599999999999
Q ss_pred EEecChHHHHhcC
Q 000671 797 TQSGNYQELLLAG 809 (1361)
Q Consensus 797 ~~~g~~~~l~~~~ 809 (1361)
.++|+|+++..+.
T Consensus 231 EE~G~P~qvf~nP 243 (256)
T COG4598 231 EEEGPPEQVFGNP 243 (256)
T ss_pred cccCChHHHhcCC
Confidence 9999999998654
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=315.02 Aligned_cols=180 Identities=24% Similarity=0.368 Sum_probs=148.9
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEEEe-cCCcC-CCCCHH
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAYVS-QTSWI-QSGSIR 675 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iayv~-Q~~~i-~~~ti~ 675 (1361)
.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++ |++.+ ...|++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 4699999999999999999999999999999999999999999998876 489998 55555 467999
Q ss_pred HHhhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000671 676 DNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1361)
Q Consensus 676 eni~~g~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1361)
||+.+... .+.+ +..++++.+++.+..+ .+..+||||||||++||||++.+|+++||||||+
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELLD-----------TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99976422 2222 2344455555543322 4567899999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 749 AVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 749 alD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
+||+.+.+.+.+.+..... +++|+|++||+++++.. ||++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999876655433 37899999999999876 8999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=312.33 Aligned_cols=192 Identities=28% Similarity=0.336 Sum_probs=155.2
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEec-CCcC-CCC
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ-TSWI-QSG 672 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q-~~~i-~~~ 672 (1361)
+.++|.+..|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|...+..+ ...+ .+.
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC
Confidence 556677777754 46999999999999999999999999999999999999999999999997544333 3333 467
Q ss_pred CHHHHhhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 673 SIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 673 ti~eni~~g~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
|++||+.++.. .+. ++..++++..++.+.+ .....+||||||||++||||++++|+++||||
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-----------DLPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999986532 122 2234444444443332 24567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
||++||+.+.+.+++.+.....+++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999888766554567899999999999875 8999999999998764
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=283.40 Aligned_cols=179 Identities=26% Similarity=0.381 Sum_probs=157.4
Q ss_pred CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEecCCcCCCCCHH
Q 000671 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIR 675 (1361)
Q Consensus 609 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~iayv~Q~~~i~~~ti~ 675 (1361)
+.++|+|+||++.+||..+|+||+|||||||++++.-+..|++|++.+.| +|+||.|.|-+|.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 45799999999999999999999999999999999999999999999988 49999999999999999
Q ss_pred HHhhcCC-----CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCc
Q 000671 676 DNILYGK-----PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV 750 (1361)
Q Consensus 676 eni~~g~-----~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~sal 750 (1361)
||+.|.. ..|.+.....++..++.. +.+.++..+||||+|||++|+|-|.--|+|+|||||||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~----------~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPD----------SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCch----------hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 9999963 356666666666655543 3345788899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHh-cCCcEEEEEccCchH-HhhcCeEEEEeCCeEE
Q 000671 751 DAHTAATLFNECVMAA-LEKKTVILVTHQVEF-LSEVDRILVLEGGQIT 797 (1361)
Q Consensus 751 D~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~ 797 (1361)
|+++++.|-+.+.+.. .++..++.||||.+. ++++|+++-+..|++-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 9999999876665554 467899999999987 7889999999999764
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=306.79 Aligned_cols=183 Identities=25% Similarity=0.296 Sum_probs=157.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEE
Confidence 678999999964 3589999999999999999999999999999999999999999999876 3899
Q ss_pred EecCCcCC-CCCHHHHhhcCCC----CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 000671 663 VSQTSWIQ-SGSIRDNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1361)
Q Consensus 663 v~Q~~~i~-~~ti~eni~~g~~----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1361)
++|++.++ +.|++||+.++.+ .++++++++++.+++....+ .+..+||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHHHHHhcC
Confidence 99998765 4799999987543 23456777888888865433 45678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhc-CeEEEE
Q 000671 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVL 791 (1361)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~-d~i~~l 791 (1361)
|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++++..+ +|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999998876554444688999999999999876 777766
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=311.68 Aligned_cols=212 Identities=23% Similarity=0.401 Sum_probs=170.1
Q ss_pred EEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-C----CCcEEEEcC----------
Q 000671 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-K----ISGTVNLYG---------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-~----~~G~v~~~g---------- 658 (1361)
++++|.+.+|.... ...+++||||++++||+++|||.|||||||+.++|+|+++ + .+|+|.++|
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57888888887542 3579999999999999999999999999999999999998 3 578998876
Q ss_pred -------eEEEEecCCcC---CCCCHHHHh----hcCCCC-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCC
Q 000671 659 -------SIAYVSQTSWI---QSGSIRDNI----LYGKPM-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1361)
Q Consensus 659 -------~iayv~Q~~~i---~~~ti~eni----~~g~~~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1361)
.|||++|+|-- +-.||.+-+ ...... . .++..+.++..++.+.-+ .+...+.+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~--------~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPER--------RLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHH--------HHhhCCcc
Confidence 49999999842 334666554 322222 1 234556666666653211 22356789
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEE
Q 000671 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1361)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1361)
|||||||||.||.|+..+|+++|.||||+|||..++.+|.+.+.+... .|.|+|+||||+..+.+ ||+|+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999887665443 58999999999999876 8999999999999
Q ss_pred EecChHHHHhcCc-hHHH
Q 000671 798 QSGNYQELLLAGT-AFEQ 814 (1361)
Q Consensus 798 ~~g~~~~l~~~~~-~~~~ 814 (1361)
|.|+.+++.++.. .|.+
T Consensus 234 E~g~~~~i~~~P~HPYT~ 251 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTR 251 (316)
T ss_pred EeCCHHHHhcCCCChHHH
Confidence 9999999987653 3443
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=302.03 Aligned_cols=202 Identities=23% Similarity=0.353 Sum_probs=170.6
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------------E
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------------I 660 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~--------------i 660 (1361)
.++++++.+|.. -.+++|+||++++||+++++|||||||||++++|.|.++|++|+|.++|. |
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 567889998874 46899999999999999999999999999999999999999999999883 8
Q ss_pred EEEecCCcCC-CCCHHHHhhcCCC-------------C--C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 661 AYVSQTSWIQ-SGSIRDNILYGKP-------------M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 661 ayv~Q~~~i~-~~ti~eni~~g~~-------------~--~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
+--+|.+-+| +.||.||++.+.. + + .++..+.++.++|.+..+ +...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~-----------~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELAD-----------RPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhc-----------chhhcC
Confidence 8889998775 6799999987521 1 1 123344555555544332 567799
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
|+|||+|+.|||||+.+|+++|||||.+|+.+....++.+.+.+... .|.|+++|.||++.+.. ||||+||+.|+++.
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999999999999999876655544 46899999999999866 89999999999999
Q ss_pred ecChHHHHhcCc
Q 000671 799 SGNYQELLLAGT 810 (1361)
Q Consensus 799 ~g~~~~l~~~~~ 810 (1361)
+|+|+|+.++..
T Consensus 231 eG~P~eV~~dp~ 242 (250)
T COG0411 231 EGTPEEVRNNPR 242 (250)
T ss_pred cCCHHHHhcCHH
Confidence 999999986643
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=306.01 Aligned_cols=187 Identities=22% Similarity=0.298 Sum_probs=156.8
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEE
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAY 662 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----------~iay 662 (1361)
..++++|++++|++ .++++|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| .++|
T Consensus 10 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 10 PLLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred ceEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 46899999999964 3589999999999999999999999999999999999999999999987 2899
Q ss_pred EecCCcCCC-CCHHHHhhcCCCC----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 000671 663 VSQTSWIQS-GSIRDNILYGKPM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1361)
Q Consensus 663 v~Q~~~i~~-~ti~eni~~g~~~----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1361)
++|++.++. .|++||+.++... .+++.++.++..++.+.. ..+..+||||||||++||||++.+
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYE-----------DTLVRQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhc-----------cCChhhCCHHHHHHHHHHHHHhcC
Confidence 999987665 4999999764321 223344555555543222 256678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeC
Q 000671 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG 793 (1361)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~ 793 (1361)
|++++|||||++||+...+.+.+.+.....+++|+|++||+++.+.. +|++++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999887665555568999999999999876 799999864
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=311.69 Aligned_cols=198 Identities=24% Similarity=0.309 Sum_probs=155.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCc--cCCCcEEEEcC--------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG-------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~--~~~~G~v~~~g-------------- 658 (1361)
++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+. +|++|+|.++|
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 689999999974 35999999999999999999999999999999999995 69999998876
Q ss_pred eEEEEecCCcCCC-CCHHHHhhcCC-------C---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCC-CCCCh
Q 000671 659 SIAYVSQTSWIQS-GSIRDNILYGK-------P---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRG-LNLSG 722 (1361)
Q Consensus 659 ~iayv~Q~~~i~~-~ti~eni~~g~-------~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g-~~LSg 722 (1361)
.++|++|++.++. .|..+++.+.. . .+ .++.++.++..++ +.+..+ ... .+|||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~---~~~~~~LS~ 148 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM-------PEDLLT---RSVNVGFSG 148 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCC-------Chhhcc---cCCCCCCCH
Confidence 2999999986543 35555543211 0 01 1122233333333 222222 223 37999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh--cCeEEEEeCCeEEEec
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE--VDRILVLEGGQITQSG 800 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~g 800 (1361)
|||||++||||++++|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. +|+|++|++|++++.|
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999877554443457999999999999876 7999999999999999
Q ss_pred ChHHH
Q 000671 801 NYQEL 805 (1361)
Q Consensus 801 ~~~~l 805 (1361)
+++..
T Consensus 229 ~~~~~ 233 (248)
T PRK09580 229 DFTLV 233 (248)
T ss_pred CHHHH
Confidence 98754
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=302.35 Aligned_cols=183 Identities=25% Similarity=0.367 Sum_probs=156.8
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEE
Confidence 468999999964 3589999999999999999999999999999999999999999998876 4899
Q ss_pred EecCCcCC-CCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 663 VSQTSWIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 663 v~Q~~~i~-~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
++|++.++ +.|++||+.+..+ .++++.+++++..++....+ ....+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-----------RPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99998764 6899999987643 34567778888887764432 35678999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEE
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVL 791 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l 791 (1361)
+||||||++||+...+.+.+.+.....+++|+|++||+...+.. +|+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999887665544468999999999887665 6998876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=303.44 Aligned_cols=182 Identities=24% Similarity=0.328 Sum_probs=153.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| +++|
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE
Confidence 678999999964 3699999999999999999999999999999999999999999999876 4899
Q ss_pred EecCCcCC-CCCHHHHhhcCCC--CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCC
Q 000671 663 VSQTSWIQ-SGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1361)
Q Consensus 663 v~Q~~~i~-~~ti~eni~~g~~--~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1361)
++|++.++ +.|++||+.++.. .++.+..+.++..++.+.. ..+..+||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI-----------DYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhh-----------hCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99998774 6899999998632 1233455566655553221 24456899999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEE
Q 000671 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILV 790 (1361)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~ 790 (1361)
+++|||||++||+.+.+.+.+.+.....+++|+|++||+.+.+.++|.-++
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999887666544568999999999999999987553
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=291.28 Aligned_cols=200 Identities=29% Similarity=0.449 Sum_probs=173.8
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~ia 661 (1361)
|+++|++.+|++ +.+++|+|++|++|.+++++||||+||||||+++.+++++++|+|.++| +++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 678999999975 4699999999999999999999999999999999999999999999998 377
Q ss_pred EEecCCcCC-CCCHHHHhhcCC-CC--------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 662 YVSQTSWIQ-SGSIRDNILYGK-PM--------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 662 yv~Q~~~i~-~~ti~eni~~g~-~~--------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
..-|+..+. ..||||-+.||+ || |...++++++-..|++ ++ + +.-.+||||||||.-+|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~-l~---d-------ryLd~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED-LS---D-------RYLDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc-hH---H-------HhHHhcccchhhhhhhh
Confidence 788887764 569999999985 33 3456677777766643 22 1 33457999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
..+.++.|.++||||+++||.+....+++.+.+...+ |||+|+|-||.++.+. +|+|+-|+||+++.+|+++|++..
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 9999999999999999999999999999877665543 8999999999999976 799999999999999999999864
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=346.91 Aligned_cols=205 Identities=19% Similarity=0.326 Sum_probs=169.6
Q ss_pred CcEEEEeeEEEeCCC--------CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000671 593 RSVKIQEGNFSWDPE--------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~--------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------ 658 (1361)
..++++|++++|+.. .+.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 358999999999631 12468999999999999999999999999999999999985 899999876
Q ss_pred ----------eEEEEecCCc--C-CCCCHHHHhhcCCC-----CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCC
Q 000671 659 ----------SIAYVSQTSW--I-QSGSIRDNILYGKP-----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1361)
Q Consensus 659 ----------~iayv~Q~~~--i-~~~ti~eni~~g~~-----~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 716 (1361)
.++|++|++. + .+.|++||+.++.. .+ +++..++++..++..+. ...+
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~ 422 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPET----------RHRY 422 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHH----------HhcC
Confidence 2899999972 4 45799999987421 12 23445566666664221 1246
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCC
Q 000671 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGG 794 (1361)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1361)
..+|||||||||+||||++.+|+++||||||++||+.+.+.+++.+.+...+ |+|+|+||||++.+.. ||+|++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 6789999999999999999999999999999999999999998876655443 8999999999999875 8999999999
Q ss_pred eEEEecChHHHHhc
Q 000671 795 QITQSGNYQELLLA 808 (1361)
Q Consensus 795 ~i~~~g~~~~l~~~ 808 (1361)
++++.|+.+++.+.
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999988653
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=347.22 Aligned_cols=202 Identities=19% Similarity=0.313 Sum_probs=166.4
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc-CCCcEEEEcC--------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-KISGTVNLYG-------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~-~~~G~v~~~g-------------- 658 (1361)
.++++|+++.|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5899999999853223468999999999999999999999999999999999998 5999999876
Q ss_pred eEEEEecCC---cC-CCCCHHHHhhcCCC--C------CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 659 SIAYVSQTS---WI-QSGSIRDNILYGKP--M------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 659 ~iayv~Q~~---~i-~~~ti~eni~~g~~--~------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
.++|++|++ .+ .+.|+.||+.++.. + +. ++.++.++.+++..+ ....+..+|||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 408 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTA----------SPELAIARLSG 408 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCC----------CcccccccCCH
Confidence 289999996 34 46799999987521 1 11 233445555544211 12356789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
|||||++||||++.+|+++||||||++||+.+.+.+++.+.....+|+|+|++|||++.+.. ||++++|++|+++..|+
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~ 488 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLI 488 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999987766554568999999999999876 89999999999999998
Q ss_pred hHHH
Q 000671 802 YQEL 805 (1361)
Q Consensus 802 ~~~l 805 (1361)
.+++
T Consensus 489 ~~~~ 492 (506)
T PRK13549 489 NHNL 492 (506)
T ss_pred cccC
Confidence 7765
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=300.45 Aligned_cols=172 Identities=28% Similarity=0.379 Sum_probs=148.9
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCC--ccCCCcEEEEcC--------------
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYG-------------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~--~~~~~G~v~~~g-------------- 658 (1361)
++++|++++|+. .++++|+||++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 468999999973 3699999999999999999999999999999999999 579999999876
Q ss_pred eEEEEecCCcCCC-CCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccC
Q 000671 659 SIAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1361)
Q Consensus 659 ~iayv~Q~~~i~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1361)
.++|++|+|.+++ .++++|+ . ....+||||||||++||||++.+
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l------------------------~-----------~~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL------------------------R-----------YVNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH------------------------h-----------hccccCCHHHHHHHHHHHHHhcC
Confidence 2999999987765 4666655 0 11247999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHh--hcCeEEEEeCCeEEEecChHHH
Q 000671 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS--EVDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~--~~d~i~~l~~G~i~~~g~~~~l 805 (1361)
|++++|||||++||+.+.+.+++.+.+...+++|+|++||+++.+. .+|++++|++|++.+.|+ .++
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~-~~~ 191 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGD-KEL 191 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEcc-HHH
Confidence 9999999999999999999988766654445899999999999987 589999999999999984 444
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=275.03 Aligned_cols=199 Identities=30% Similarity=0.425 Sum_probs=168.1
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
+|.+++.+|.|... .+|-||+|+.+.||.+.+.||+|+|||||++.+.=+.-|.+|+..+.|
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 58899999999854 589999999999999999999999999999999888889999998865
Q ss_pred ----eEEEEecCCcCC-CCCHHHHhhc------CCCCC--HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 659 ----SIAYVSQTSWIQ-SGSIRDNILY------GKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 659 ----~iayv~Q~~~i~-~~ti~eni~~------g~~~~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
++|+|+|+..++ ..||.||+.- |.+.+ ..+..+.++...|.+..+.+ +..|||||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~-----------plhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRY-----------PLHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccC-----------ceecccchh
Confidence 499999997764 5699999864 22222 23445566666666554444 458999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
|||+||||++.+|+++++||||+||||+...++.+.+.+....|.|-++|||.++..++ |.+++.|++|+|+|.|+.+-
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999999999999999999887655555579999999999999987 79999999999999998776
Q ss_pred HH
Q 000671 805 LL 806 (1361)
Q Consensus 805 l~ 806 (1361)
..
T Consensus 228 ft 229 (242)
T COG4161 228 FT 229 (242)
T ss_pred cc
Confidence 54
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=298.48 Aligned_cols=177 Identities=29% Similarity=0.462 Sum_probs=142.2
Q ss_pred EEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe-EEEEecCCcCCCCCH
Q 000671 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAYVSQTSWIQSGSI 674 (1361)
Q Consensus 596 ~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~-iayv~Q~~~i~~~ti 674 (1361)
+++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|.|+.+|++|+|.++|. +. + ......
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~---~---~~~~~~ 71 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA---S---LSPKEL 71 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC---c---CCHHHH
Confidence 46899999964 36999999999999999999999999999999999999999999999873 10 0 000011
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHH
Q 000671 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1361)
Q Consensus 675 ~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~ 754 (1361)
+..+.+ ..++++.+++.+.++ .++.+||||||||++||||++.+|+++||||||++||+.+
T Consensus 72 ~~~i~~--------~~q~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~ 132 (180)
T cd03214 72 ARKIAY--------VPQALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH 132 (180)
T ss_pred HHHHhH--------HHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 222221 111667777765443 4567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 755 AATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 755 ~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
.+.+.+.+.....+ ++|+|++||+++.+.. ||++++|++|++.+.|
T Consensus 133 ~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 133 QIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99988765544344 7899999999999855 8999999999998653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=309.00 Aligned_cols=192 Identities=23% Similarity=0.340 Sum_probs=157.7
Q ss_pred EEeCCCCCCCcccceeEEec-----CCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-eEEEEecCCc-CCCCCH
Q 000671 602 FSWDPELAIPTLRGVNLDIK-----WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSW-IQSGSI 674 (1361)
Q Consensus 602 f~~~~~~~~~~L~~i~l~i~-----~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-~iayv~Q~~~-i~~~ti 674 (1361)
|+|+.. ...++|++|+++ +||+++|+|+||||||||+++|+|+++|++|+|.++| .|+|++|++. .++.|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTV 78 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCH
Confidence 567643 347888988887 6899999999999999999999999999999999999 8999999986 468899
Q ss_pred HHHhhcCCC-C--CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcC
Q 000671 675 RDNILYGKP-M--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751 (1361)
Q Consensus 675 ~eni~~g~~-~--~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD 751 (1361)
+||+.+... . ...+..++++.+++...++ .+..+||||||||++||||++.+|+++||||||++||
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999975422 1 2234566777777754332 4667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEE--EecChHHHH
Q 000671 752 AHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT--QSGNYQELL 806 (1361)
Q Consensus 752 ~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~--~~g~~~~l~ 806 (1361)
+.+...+.+.+..... .++|+|+|||+++.+.. ||+|++|+++..+ ..++++++.
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 148 VEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999998876554433 48999999999999886 8999999775444 556666654
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=344.04 Aligned_cols=209 Identities=22% Similarity=0.371 Sum_probs=169.1
Q ss_pred CcEEEEeeEEEeCC--CCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEc-C-----------
Q 000671 593 RSVKIQEGNFSWDP--ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-G----------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~--~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~-g----------- 658 (1361)
..++++|++++|+. +...++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++ |
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 35999999999963 122469999999999999999999999999999999999999999999984 3
Q ss_pred --------eEEEEecCCcCC-CCCHHHHhhcCCC--CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 659 --------SIAYVSQTSWIQ-SGSIRDNILYGKP--MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 659 --------~iayv~Q~~~i~-~~ti~eni~~g~~--~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
+++|++|++.++ +.|++||+.++.. .. +++..++++.+++...- .......+..+||||
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDELSEG 431 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhhCCHH
Confidence 289999998665 4699999986321 11 12344555555553200 000123567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
||||++||||++.+|+++||||||++||+...+.+.+.+..... .|+|+|++|||++++.. ||++++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999877655444 38999999999999876 89999999999999999
Q ss_pred hHHHHh
Q 000671 802 YQELLL 807 (1361)
Q Consensus 802 ~~~l~~ 807 (1361)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 888753
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=351.64 Aligned_cols=206 Identities=19% Similarity=0.294 Sum_probs=176.8
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------ 658 (1361)
.+..++++|+++.|+.+ ++++++|+||+|++||+++|+|+||||||||+++|.|+.+|++|+|.++|
T Consensus 1934 ~~~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~ 2012 (2272)
T TIGR01257 1934 KTDILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQ 2012 (2272)
T ss_pred CCceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhh
Confidence 34579999999999742 24699999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCcCC-CCCHHHHhhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSWIQ-SGSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~i~-~~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.||||||++.++ +.|++||+.+.. ... +++.+++++.++|.+..+ ++..+||||||||++|
T Consensus 2013 ~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-----------k~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2013 NMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-----------RLAGTYSGGNKRKLST 2081 (2272)
T ss_pred hEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHH
Confidence 389999997665 679999997631 122 233456677777765433 5667899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|||++.+|++++|||||+|||+..++.+++.+.+...+|+|+|++||+++.+.. ||||++|++|+++..|+++++..+
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999999999999999998766555568999999999999876 899999999999999999998654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=306.21 Aligned_cols=179 Identities=31% Similarity=0.469 Sum_probs=150.7
Q ss_pred EEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------EEEEecCCcC---CCCCHHHHhhcCCC---
Q 000671 618 LDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWI---QSGSIRDNILYGKP--- 683 (1361)
Q Consensus 618 l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~--------iayv~Q~~~i---~~~ti~eni~~g~~--- 683 (1361)
|++++||+++|+|+||||||||+++|.|.++|++|+|.++|. ++|++|++.+ ++.|++||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 578999999999999999999999999999999999999883 9999999854 35799999987521
Q ss_pred --C------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHH
Q 000671 684 --M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1361)
Q Consensus 684 --~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~ 755 (1361)
+ +.++..++++.+++.+.. ..+..+||||||||++||||++.+|++++|||||++||+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELA-----------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1 123345556666664322 245678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 756 ATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 756 ~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
+.+.+.+.....+++|+|++||+++.+.. ||+++++ +|++++.|+++++.++
T Consensus 150 ~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 150 ELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 99988766554568999999999998865 8999999 8999999999988653
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=300.37 Aligned_cols=184 Identities=23% Similarity=0.300 Sum_probs=157.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEEEe
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYVS 664 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----------~iayv~ 664 (1361)
++++|+++.|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG 79 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEec
Confidence 789999999964 3589999999999999999999999999999999999999999999887 379999
Q ss_pred cCCcC-CCCCHHHHhhcCCC---CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 665 QTSWI-QSGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 665 Q~~~i-~~~ti~eni~~g~~---~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
|++.+ .+.|++||+.+... .++++..++++..++....+ .+..+||||||||++||||++++|++
T Consensus 80 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 80 HRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-----------LPFGYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-----------CChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 88654 57899999976432 23455677888888765332 34568999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeC
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1361)
++|||||++||+.+.+.+.+.+.+...+++|+|++||+++.++. |+++.++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999987665544568999999999999988 99988754
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=306.00 Aligned_cols=187 Identities=24% Similarity=0.347 Sum_probs=152.4
Q ss_pred EEEEeeEEEeCCC----CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEc--C----------
Q 000671 595 VKIQEGNFSWDPE----LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--G---------- 658 (1361)
Q Consensus 595 i~~~~~~f~~~~~----~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~--g---------- 658 (1361)
++++|++++|+.. ...++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6789999999631 12468999999999999999999999999999999999999999999886 3
Q ss_pred ---------eEEEEecCCcCC-CCCHHHHhhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 659 ---------SIAYVSQTSWIQ-SGSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 659 ---------~iayv~Q~~~i~-~~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
.++|++|++.++ +.|++||+.++. ..+ .++..++++..++..+.. ..++.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW----------HLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh----------hCCcccCC
Confidence 389999998765 569999997631 122 123344455555433221 14577899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEE
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVL 791 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l 791 (1361)
||||||++||||++.+|++++|||||++||+++.+.+.+.+.....+|+|+|++||+.+++.. ||+++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999887665544468999999999998864 8999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=296.95 Aligned_cols=184 Identities=26% Similarity=0.440 Sum_probs=162.8
Q ss_pred ceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEEEEecCCcCC-CCCHHH
Q 000671 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQ-SGSIRD 676 (1361)
Q Consensus 615 ~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------------~iayv~Q~~~i~-~~ti~e 676 (1361)
++||+.+.-.++||-|++|||||||+++|.|+.+|++|.|.++| +||||+|+.-+| ..|||.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 67888888789999999999999999999999999999999988 499999999876 569999
Q ss_pred HhhcCCCCC-HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHH
Q 000671 677 NILYGKPMD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1361)
Q Consensus 677 ni~~g~~~~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~ 755 (1361)
|+.||.... ...++++++..++..-++. .+.+||||+||||+|+|||..+|+++|||||+|+||...+
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R-----------~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDR-----------YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhh-----------CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 999998754 6678899999998888775 4568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-CcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 756 ATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 756 ~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
+++.-.+-+...+ +-.++.|||.++++.+ ||+|++|++|++...|..+++..+.
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 9987655443333 5689999999998755 9999999999999999999988653
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=288.88 Aligned_cols=160 Identities=26% Similarity=0.424 Sum_probs=131.5
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe-EEEEecCCcCCCCC
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAYVSQTSWIQSGS 673 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~-iayv~Q~~~i~~~t 673 (1361)
++++|++++|+. .++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|. +. ..+
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~---------~~~ 68 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS---------FAS 68 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC---------cCC
Confidence 468999999964 36999999999999999999999999999999999999999999999873 11 000
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHH
Q 000671 674 IRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753 (1361)
Q Consensus 674 i~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~ 753 (1361)
.++ .+. ...+. . ..||||||||++||||++++|++++|||||++||+.
T Consensus 69 ~~~-----------~~~---~~i~~------~------------~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~ 116 (163)
T cd03216 69 PRD-----------ARR---AGIAM------V------------YQLSVGERQMVEIARALARNARLLILDEPTAALTPA 116 (163)
T ss_pred HHH-----------HHh---cCeEE------E------------EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 000 000 00000 0 019999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 754 TAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 754 ~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
+.+.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++++
T Consensus 117 ~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 117 EVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999987665554568999999999998876 89999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=350.15 Aligned_cols=191 Identities=29% Similarity=0.406 Sum_probs=162.5
Q ss_pred CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC---CcEEEEcCe----------EEEEecCCcCC-CCCH
Q 000671 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYGS----------IAYVSQTSWIQ-SGSI 674 (1361)
Q Consensus 609 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~---~G~v~~~g~----------iayv~Q~~~i~-~~ti 674 (1361)
++++|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|. +|||+|+++++ +.||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 567999999999999999999999999999999999999874 899999883 69999999887 5699
Q ss_pred HHHhhcCCCC------CHH----HHHHHHHHhcchHHHhcCCCCCCccccCC--CCCCChHHHHHHHHHHHHccCCCEEE
Q 000671 675 RDNILYGKPM------DKA----RYDKAIKACALDKDINNFDHGDLTEIGQR--GLNLSGGQKQRIQLARAVYNDADIYL 742 (1361)
Q Consensus 675 ~eni~~g~~~------~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~--g~~LSgGQkqRv~lARal~~~~~ill 742 (1361)
+|||.|+... .++ +.+++++..+| ++..+|.+|+. +..||||||||++||||++.+|++++
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vll 189 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGL-------RKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLF 189 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCc-------hhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEE
Confidence 9999986432 111 22333333332 33457889984 57899999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCch-H-HhhcCeEEEEeCCeEEEecChHHHH
Q 000671 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE-F-LSEVDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 743 LDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~-~-l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1361)
|||||||||++++.++.+.+.+...+|+|+|+++|+++ . .+.+|++++|++|++++.|+++++.
T Consensus 190 lDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 190 CDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred eeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999999999887776667999999999985 4 4668999999999999999999875
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=296.62 Aligned_cols=179 Identities=19% Similarity=0.271 Sum_probs=151.7
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEec
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------~iayv~Q 665 (1361)
++++|++++|+. +.++ ++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|++|
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccC
Confidence 678999999963 2345 59999999999999999999999999999999999999999987 2899999
Q ss_pred CCcC-CCCCHHHHhhcCCCC--CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 000671 666 TSWI-QSGSIRDNILYGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1361)
Q Consensus 666 ~~~i-~~~ti~eni~~g~~~--~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ill 742 (1361)
++.+ ++.|++||+.++... ..++..++++.+++.+..+ +++.+||||||||++||||++++|++++
T Consensus 78 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred CcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8754 678999999875432 2445666777777754433 4677999999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeE
Q 000671 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRI 788 (1361)
Q Consensus 743 LDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 788 (1361)
|||||++||+.+.+.+.+.+.....+++|+|++||+++.++.+|-+
T Consensus 147 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 9999999999999988776543445689999999999999998865
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-29 Score=293.67 Aligned_cols=452 Identities=17% Similarity=0.204 Sum_probs=293.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHH---HHHHhHHHHHhcHH-HHHHHHHHHHHHHH
Q 000671 331 ESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIV---NYIAVDAYRMGEFP-FWFHLTWSLALQLF 406 (1361)
Q Consensus 331 ~~~~~~~~~~~~~~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~iv---Nlms~D~~ri~~~~-~~~~~~w~~plqi~ 406 (1361)
.+.......|...-+..|.|.-++.-+|++=++-..--+-.+..+.|. -+++.|++++.... .....+-.+|+.++
T Consensus 135 ~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~ 214 (659)
T KOG0060|consen 135 ISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLV 214 (659)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeee
Confidence 344455566778889999999999999998876321100001111122 36788998876532 33345556677777
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHH
Q 000671 407 LAIGVLFGVVGLGALPGLVL-FLICGLLN----VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSL 481 (1361)
Q Consensus 407 va~~~L~~~lG~~~l~gl~v-~~l~~~l~----~~~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~ 481 (1361)
.-.+.+|...||-..+.+.. +++...+| .|+.+++...|+. .-|-|-+. +++..|-..|-+|+-+..-...
T Consensus 215 ~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qekl---EGdfRy~h-~rlr~NaE~iAFY~g~~~E~~~ 290 (659)
T KOG0060|consen 215 YYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKL---EGDFRYKH-SRLRVNAEEIAFYRGGQVEHQR 290 (659)
T ss_pred hhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHh---hcchhhhe-eeeeecchhhhhhccCchHHHH
Confidence 77777777666533222111 11122222 2334444333332 23444433 2445566778888887655544
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHH-HHHHHHhCCCCCCHHHHHHHHH----HHHHHHHHH
Q 000671 482 IESRREKEFKWLSEAQLRKA----YGTVIYWMS---PTIISSVI-FLGCALTGSAPLNASTIFTVLA----TLRSMGEPV 549 (1361)
Q Consensus 482 i~~~R~~El~~l~~~~~~~~----~~~~~~~~~---p~~v~~~~-f~~~~l~~~~~Lt~~~~Ft~l~----lf~~l~~pl 549 (1361)
+++.=+.=++++++....+. +..++-+.. +.++.... |.+. . ...++++..++-++ .+.-+...+
T Consensus 291 ~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h--~-y~~~s~aEL~~~i~~na~~~i~Li~~f 367 (659)
T KOG0060|consen 291 TDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGH--V-YDDLSPAELSGLISNNAFVFIYLISAF 367 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeeccc--c-cCCcCHHHHHHHHhhhHHHHHHHHHHH
Confidence 44333333333333221111 111111111 11111111 1111 1 14577777665543 234444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cCCC-------------Cchhhh-------ccccCCCCcEEEEeeEEEeCCCC
Q 000671 550 RMIPEALSIMIQVKVSFDRINAFLLD-HELN-------------NDDVRR-------ISLQKSDRSVKIQEGNFSWDPEL 608 (1361)
Q Consensus 550 ~~lp~~i~~~~~a~vS~~RI~~fL~~-~e~~-------------~~~~~~-------~~~~~~~~~i~~~~~~f~~~~~~ 608 (1361)
..+...-..+.+-..-..||.++++. ++.. .+...+ .....+++.|++++++++-|++
T Consensus 368 ~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~- 446 (659)
T KOG0060|consen 368 GRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN- 446 (659)
T ss_pred HHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-
Confidence 55555555555555567788887641 1100 000000 0112345789999999998876
Q ss_pred CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEc--C---eEEEEecCCcCCCCCHHHHhhcCC-
Q 000671 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--G---SIAYVSQTSWIQSGSIRDNILYGK- 682 (1361)
Q Consensus 609 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~--g---~iayv~Q~~~i~~~ti~eni~~g~- 682 (1361)
...+.+|+||+|+.|+-+.|+||||||||||++.+.|+.+..+|++... | .+-|+||.|...-||.||-+.+..
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~ 526 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLK 526 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCc
Confidence 4567888999999999999999999999999999999999999999764 3 499999999999999999999972
Q ss_pred -------CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHH
Q 000671 683 -------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1361)
Q Consensus 683 -------~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~ 755 (1361)
..++++..+.++..+|..-++....=|+..+-+-...||+|||||++.||-+|++|++-+|||.|||||..++
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE 606 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVE 606 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHH
Confidence 2457789999999999877776554444445567789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeC
Q 000671 756 ATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1361)
Q Consensus 756 ~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1361)
..+++.|.+ .|.|.|-|.|+.+.-+.=|.++-|+.
T Consensus 607 ~~~Yr~~r~---~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 607 GALYRKCRE---MGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHH---cCCeEEEeccHHHHHhhhhEEEEecC
Confidence 999987653 58899999999998888899999976
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=338.03 Aligned_cols=200 Identities=24% Similarity=0.371 Sum_probs=169.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCc--
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-- 668 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~-- 668 (1361)
..++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+||++|++.
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 394 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYD 394 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccccc
Confidence 46999999999964 3589999999999999999999999999999999999999999999987 6999999974
Q ss_pred CC-CCCHHHHhhcCC--CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 669 IQ-SGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 669 i~-~~ti~eni~~g~--~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
++ +.|++||+.+.. ..++++.+++++.+++..+.. ..++.+||||||||++||||++.+|+++||||
T Consensus 395 ~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 464 (530)
T PRK15064 395 FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI----------KKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464 (530)
T ss_pred CCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh----------cCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 33 479999986521 223456677777777742221 25678999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE-EecChHHHHhc
Q 000671 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELLLA 808 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~~~ 808 (1361)
||++||+.+.+.+.+.+.. . +.|+|+||||++++.. ||++++|++|+++ +.|+++++.+.
T Consensus 465 Pt~~LD~~~~~~l~~~l~~-~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 465 PTNHMDMESIESLNMALEK-Y--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCCCCHHHHHHHHHHHHH-C--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999998875543 2 4599999999999876 8999999999998 88998887643
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=339.24 Aligned_cols=194 Identities=20% Similarity=0.375 Sum_probs=159.5
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 589999998652 379999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCC----cCCCCCHHHHhhcCCCC------------CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCC
Q 000671 660 IAYVSQTS----WIQSGSIRDNILYGKPM------------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1361)
Q Consensus 660 iayv~Q~~----~i~~~ti~eni~~g~~~------------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 719 (1361)
++|++|++ .+.+.|++||+.++... .. ++.+++++..++.. + .......+
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~--~~~~~~~~ 409 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC--------H--SVNQNITE 409 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC--------C--CccCcccc
Confidence 89999984 33467999999876321 11 12233344433321 1 12356788
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEE
Q 000671 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1361)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1361)
|||||||||+||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++.+.. ||++++|++|++++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999987665554568999999999998765 89999999999998
Q ss_pred ecCh
Q 000671 799 SGNY 802 (1361)
Q Consensus 799 ~g~~ 802 (1361)
.++.
T Consensus 490 ~~~~ 493 (510)
T PRK09700 490 ILTN 493 (510)
T ss_pred EecC
Confidence 7755
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.9e-32 Score=295.70 Aligned_cols=180 Identities=25% Similarity=0.315 Sum_probs=149.2
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------~iay 662 (1361)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEE
Confidence 468899999964 3689999999999999999999999999999999999999999999877 3899
Q ss_pred EecCCcCC-CCCHHHHhhcCCCC---CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 000671 663 VSQTSWIQ-SGSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 663 v~Q~~~i~-~~ti~eni~~g~~~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1361)
++|++.++ +.|++||+.+.... ++++..++++..++.+.++ .+..+||||||||++||||++.+|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-----------LPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-----------CChhhcCHHHHHHHHHHHHHhcCC
Confidence 99998765 47999999765321 2345677777777765443 456789999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEE
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1361)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1361)
++++|||||++||+.+.+.+.+.+.....+|+|+|++||+...+.. ++++
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~ 196 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE-AREL 196 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-eEEe
Confidence 9999999999999999998877665544568999999998854332 4443
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-32 Score=295.13 Aligned_cols=161 Identities=27% Similarity=0.416 Sum_probs=136.0
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------eEEEEecCC--cCCCC
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------SIAYVSQTS--WIQSG 672 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------------~iayv~Q~~--~i~~~ 672 (1361)
.++|+|+||+|++||+++|+||||||||||+++|+|..+|++|+|.++| .++|++|+| .+++.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 4689999999999999999999999999999999999999999998865 389999998 46778
Q ss_pred CHHHHhhcCC---CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 673 SIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 673 ti~eni~~g~---~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
|++||+.++. ..+. ++..++++..++.+..+ ++..+||||||||++||||++.+|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE-----------RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999998752 1222 24455666666654333 4567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchH
Q 000671 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~ 781 (1361)
||++||+.+.+.+.+.+.....+|+|+|++||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999887765554568999999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-32 Score=338.75 Aligned_cols=200 Identities=21% Similarity=0.289 Sum_probs=162.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-CCcEEEEcC--------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-ISGTVNLYG-------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-~~G~v~~~g-------------- 658 (1361)
.++++|++++|+.+.+..+|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 58999999988432124589999999999999999999999999999999999985 899999876
Q ss_pred eEEEEecCC----cCCCCCHHHHhhcCCC--------CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 659 SIAYVSQTS----WIQSGSIRDNILYGKP--------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 659 ~iayv~Q~~----~i~~~ti~eni~~g~~--------~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
+++|++|++ .+.+.|++||+.++.. .+. ++.+++++.+++..+ ....+...|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA----------SPFLPIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC----------CccCccccCCH
Confidence 289999996 3456799999987521 111 223444555444211 12256678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
|||||++||||++.+|+++||||||++||+.+.+.+++.+.....+|+|+|++|||++++.. ||++++|++|+++..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999887665555568999999999999876 89999999999998765
Q ss_pred hH
Q 000671 802 YQ 803 (1361)
Q Consensus 802 ~~ 803 (1361)
.+
T Consensus 487 ~~ 488 (500)
T TIGR02633 487 NH 488 (500)
T ss_pred cc
Confidence 43
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-31 Score=336.51 Aligned_cols=191 Identities=26% Similarity=0.363 Sum_probs=160.4
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC--CcEEEEcC---------eEEEEecCCcCC-CCCHHHH
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI--SGTVNLYG---------SIAYVSQTSWIQ-SGSIRDN 677 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~--~G~v~~~g---------~iayv~Q~~~i~-~~ti~en 677 (1361)
+++|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++| ++|||+|++.++ +.||+||
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 160 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET 160 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence 46999999999999999999999999999999999999885 89999988 389999998876 5699999
Q ss_pred hhcCC------CCCHH----HHHHHHHHhcchHHHhcCCCCCCccccCC-CCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000671 678 ILYGK------PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQR-GLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1361)
Q Consensus 678 i~~g~------~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~-g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1361)
+.|.. ..+++ +.+++++..+|. +..+|.+|++ +..||||||||++||||++++|+|++||||
T Consensus 161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEP 233 (659)
T PLN03211 161 LVFCSLLRLPKSLTKQEKILVAESVISELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233 (659)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCC
Confidence 98742 12222 234444444443 2335667654 678999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchH-H-hhcCeEEEEeCCeEEEecChHHHHh
Q 000671 747 FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-L-SEVDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 747 ~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l-~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
|+|||+.++.++.+.+.+...+|+|+|++||+++. + +.+|+|++|++|++++.|+.+++.+
T Consensus 234 tsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 234 TSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999988766555579999999999974 4 4589999999999999999998863
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-32 Score=285.79 Aligned_cols=205 Identities=23% Similarity=0.391 Sum_probs=174.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEe
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVS 664 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g---------~iayv~ 664 (1361)
.+++++++.+|.+ ..+++|+||++++|++.+++|+||+||||.+++|+|+++|++|+|.++| +|||.|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLP 78 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLP 78 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccCh
Confidence 4789999999975 4689999999999999999999999999999999999999999999998 799999
Q ss_pred cCCcC-CCCCHHHHhhcCC---CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 000671 665 QTSWI-QSGSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1361)
Q Consensus 665 Q~~~i-~~~ti~eni~~g~---~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1361)
.+.-+ +..||.|-+.|-. .++++..++-++ ..++.+.-.+. -.++..+||.|.+|+|.+--|++++|++
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~-----~wLer~~i~~~--~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQ-----AWLERLEIVGK--KTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHH-----HHHHhcccccc--ccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 99765 6789999998742 244444333322 23333322221 1367889999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
++||||||||||.+.+.+-+.++....+|+|||++||+++.++. ||+++.|++|+.+-.|+.+++.++
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 99999999999999998888777777889999999999999987 999999999999999999998764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-32 Score=335.00 Aligned_cols=196 Identities=22% Similarity=0.344 Sum_probs=161.7
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 5788888742 389999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCC----cCCCCCHHHHhhcCCCC---------CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 660 IAYVSQTS----WIQSGSIRDNILYGKPM---------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 660 iayv~Q~~----~i~~~ti~eni~~g~~~---------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
++|++|++ .+.+.|+.||+.++... +. ++.++.++.+++..+ ....+..+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 399 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTP----------SREQLIMNLSG 399 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccC----------CccCccccCCH
Confidence 79999997 34568999999875310 11 223444444444211 12356789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|.|+|++|||++++.. ||++++|++|++++.|+
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999987665555568999999999999865 89999999999999998
Q ss_pred hHHHH
Q 000671 802 YQELL 806 (1361)
Q Consensus 802 ~~~l~ 806 (1361)
.++..
T Consensus 480 ~~~~~ 484 (501)
T PRK11288 480 REQAT 484 (501)
T ss_pred cccCC
Confidence 87654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-32 Score=335.40 Aligned_cols=194 Identities=23% Similarity=0.406 Sum_probs=160.8
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|+++ ++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| .
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 588888873 369999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCC---cC-CCCCHHHHhhcCCC---------CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCCh
Q 000671 660 IAYVSQTS---WI-QSGSIRDNILYGKP---------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1361)
Q Consensus 660 iayv~Q~~---~i-~~~ti~eni~~g~~---------~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSg 722 (1361)
+||++|+| .+ .+.|++||+.++.. .+ +++.+++++.+++..+ ...+++.+|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 398 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTP----------SMEQAIGLLSG 398 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCC----------CccCchhhCCH
Confidence 89999997 33 56799999987421 11 1223344444444210 12366789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++.+.. ||+|++|++|+++..|+
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999988766655568999999999999876 89999999999999998
Q ss_pred hHHH
Q 000671 802 YQEL 805 (1361)
Q Consensus 802 ~~~l 805 (1361)
.+++
T Consensus 479 ~~~~ 482 (501)
T PRK10762 479 REQA 482 (501)
T ss_pred cccC
Confidence 7765
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=294.81 Aligned_cols=184 Identities=18% Similarity=0.224 Sum_probs=149.0
Q ss_pred cccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEE-EcCeEEEEecCCcCCC-CCHHHHhhcCC---CCCH
Q 000671 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-LYGSIAYVSQTSWIQS-GSIRDNILYGK---PMDK 686 (1361)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~-~~g~iayv~Q~~~i~~-~ti~eni~~g~---~~~~ 686 (1361)
+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|. ++|....+.|++.+++ .|++||+.+.. ..+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 68999999999999999999999999999999999999999997 7776444566666654 69999998642 2333
Q ss_pred HHHHHHH-HHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHH
Q 000671 687 ARYDKAI-KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765 (1361)
Q Consensus 687 ~~~~~~~-~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~ 765 (1361)
++..+.+ +..++... ...+...||||||||++||||++.+|+++|||||++++|+.+.+.+.+.+.+.
T Consensus 82 ~~~~~~~~~~~~l~~~-----------~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~ 150 (213)
T PRK15177 82 DEFSHFCYQLTQLEQC-----------YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQ 150 (213)
T ss_pred HHHHHHHHHHhChhHH-----------hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHH
Confidence 3333222 22222221 12456789999999999999999999999999999999999999887765443
Q ss_pred hcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 766 ALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 766 ~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
.+++|+|++||+++.+.. ||++++|++|++++.|+.++..+
T Consensus 151 -~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 151 -LQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred -hhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 356799999999999865 89999999999999999888753
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-32 Score=293.29 Aligned_cols=194 Identities=25% Similarity=0.333 Sum_probs=162.2
Q ss_pred cEEEEeeEEEeCCCC------CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeE-EEEecC
Q 000671 594 SVKIQEGNFSWDPEL------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI-AYVSQT 666 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~i-ayv~Q~ 666 (1361)
-++++|.+..|+... ...+++||||+|++||.++|||.|||||||+-++|+|+++|++|+|.++|+= .-..
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 467888888887532 1468999999999999999999999999999999999999999999998841 1111
Q ss_pred CcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000671 667 SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1361)
Q Consensus 667 ~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1361)
.....+++.+.++..++.++.. ...+++|||||+|||+||||+.-+|+++++|||
T Consensus 82 ---------------~~~~~~~v~elL~~Vgl~~~~~----------~ryPhelSGGQrQRi~IARALal~P~liV~DEp 136 (268)
T COG4608 82 ---------------KEERRERVLELLEKVGLPEEFL----------YRYPHELSGGQRQRIGIARALALNPKLIVADEP 136 (268)
T ss_pred ---------------hhHHHHHHHHHHHHhCCCHHHh----------hcCCcccCchhhhhHHHHHHHhhCCcEEEecCc
Confidence 2223456888899988877543 256789999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcCc-hHHH
Q 000671 747 FSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT-AFEQ 814 (1361)
Q Consensus 747 ~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~-~~~~ 814 (1361)
+|+||..++.+|.+.+..... .|-|.+++|||++.+++ +|+|.||..|+|+|.|+.+++..+.. .|.+
T Consensus 137 vSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk 207 (268)
T COG4608 137 VSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTK 207 (268)
T ss_pred hhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHH
Confidence 999999999999876554433 48899999999999988 79999999999999999999987543 3443
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=312.31 Aligned_cols=171 Identities=30% Similarity=0.411 Sum_probs=145.2
Q ss_pred EeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEEecCCcCCC-CCHHHHhhcCCC---CC----HHH
Q 000671 628 VCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KAR 688 (1361)
Q Consensus 628 ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-----------~iayv~Q~~~i~~-~ti~eni~~g~~---~~----~~~ 688 (1361)
|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++. .|++||+.|+.. .+ .++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999999999999999987 3899999988764 699999998642 22 234
Q ss_pred HHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-
Q 000671 689 YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL- 767 (1361)
Q Consensus 689 ~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~- 767 (1361)
.+++++.+++....+ .+..+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+...
T Consensus 81 ~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 81 VLEALRLVQLEEFAD-----------RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHcCCcchhc-----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 556666666643332 45678999999999999999999999999999999999999999877665444
Q ss_pred CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 768 EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 768 ~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
.|+|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 150 ~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 150 LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 38999999999998765 8999999999999999999997653
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-31 Score=272.41 Aligned_cols=141 Identities=32% Similarity=0.511 Sum_probs=129.4
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCCCC
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~~~ 672 (1361)
++++|+++.|++ .++++|+||++++||+++|+|+||||||||+++|.|+.+|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~------- 70 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ------- 70 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-------
Confidence 468899999964 2599999999999999999999999999999999999999999999998 5899998
Q ss_pred CHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q 000671 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1361)
Q Consensus 673 ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~ 752 (1361)
||||||||++||||++++|++++||||+++||+
T Consensus 71 -----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCe
Q 000671 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1361)
Q Consensus 753 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1361)
.+.+.+.+.+. .. ++|+|++||+++.+.. +|++++|++|+
T Consensus 104 ~~~~~l~~~l~-~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 104 ESIEALEEALK-EY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHH-Hc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999876543 32 4799999999999876 79999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=331.30 Aligned_cols=195 Identities=19% Similarity=0.360 Sum_probs=159.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------~ 659 (1361)
.++++|++. .+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++| .
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 588888873 159999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCC----cCCCCCHHHHhhcC----CCC--CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 660 IAYVSQTS----WIQSGSIRDNILYG----KPM--DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 660 iayv~Q~~----~i~~~ti~eni~~g----~~~--~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
++|+||++ ...+.|+.||+... ... .. ++.+++++.+++.. .....+..+||||||
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~k 409 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF----------NHAEQAARTLSGGNQ 409 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC----------CCccCccccCCcHHH
Confidence 89999985 33456999998532 011 11 12334444444421 012356789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1361)
||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++++.. ||++++|++|+++..|+.++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999988766554568999999999999876 89999999999999998876
Q ss_pred HH
Q 000671 805 LL 806 (1361)
Q Consensus 805 l~ 806 (1361)
+.
T Consensus 490 ~~ 491 (510)
T PRK15439 490 IN 491 (510)
T ss_pred CC
Confidence 54
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-31 Score=328.82 Aligned_cols=199 Identities=22% Similarity=0.347 Sum_probs=163.8
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCc-C
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-I 669 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~-i 669 (1361)
..++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.+++ .|||++|++. +
T Consensus 321 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 397 (552)
T TIGR03719 321 KVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 397 (552)
T ss_pred eEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCcccc
Confidence 46999999999964 3699999999999999999999999999999999999999999999865 5999999963 4
Q ss_pred -CCCCHHHHhhcCCCC---C--HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 000671 670 -QSGSIRDNILYGKPM---D--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1361)
Q Consensus 670 -~~~ti~eni~~g~~~---~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illL 743 (1361)
.+.|++||+.++... . +.+.+++++.+++..+. ...+..+||||||||++||||++.+|+++||
T Consensus 398 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGe~qrv~la~al~~~p~lllL 467 (552)
T TIGR03719 398 DPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD----------QQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467 (552)
T ss_pred CCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 457999999886431 1 22334555555553221 1246678999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeC-CeEE-EecChHHHHh
Q 000671 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG-GQIT-QSGNYQELLL 807 (1361)
Q Consensus 744 Dep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~-G~i~-~~g~~~~l~~ 807 (1361)
||||++||+.+.+.+.+.+... . .|+|+||||++++.. ||+|++|++ |++. ..|+++++.+
T Consensus 468 DEPt~~LD~~~~~~l~~~l~~~--~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 468 DEPTNDLDVETLRALEEALLEF--A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred eCCCCCCCHHHHHHHHHHHHHC--C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999988755432 3 499999999999876 899999987 5876 6788877653
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=327.98 Aligned_cols=200 Identities=22% Similarity=0.342 Sum_probs=165.2
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCC-cC
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-WI 669 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~-~i 669 (1361)
..++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.+++ +|||+||++ .+
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 399 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 399 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhc
Confidence 46999999999964 3599999999999999999999999999999999999999999999865 599999996 44
Q ss_pred -CCCCHHHHhhcCCCC-----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 000671 670 -QSGSIRDNILYGKPM-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1361)
Q Consensus 670 -~~~ti~eni~~g~~~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illL 743 (1361)
.+.|++||+.++... .+.+.++.++..++..+. ...+..+||||||||++||||++.+|+++||
T Consensus 400 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~la~al~~~p~lllL 469 (556)
T PRK11819 400 DPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD----------QQKKVGVLSGGERNRLHLAKTLKQGGNVLLL 469 (556)
T ss_pred CCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 456999999876321 122334455555553211 1256778999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeC-CeEE-EecChHHHHhc
Q 000671 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG-GQIT-QSGNYQELLLA 808 (1361)
Q Consensus 744 Dep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~-G~i~-~~g~~~~l~~~ 808 (1361)
||||++||+.+.+.+.+.+.. . + .|+|+||||++++.. ||+|++|++ |++. ..|+++++.+.
T Consensus 470 DEPt~~LD~~~~~~l~~~l~~-~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 470 DEPTNDLDVETLRALEEALLE-F-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred cCCCCCCCHHHHHHHHHHHHh-C-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999998875543 2 3 499999999999876 899999986 7876 58998887654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=331.01 Aligned_cols=199 Identities=20% Similarity=0.379 Sum_probs=165.9
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCC--
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-- 667 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~-- 667 (1361)
+..|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+.+ ++||++|++
T Consensus 310 ~~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~ 386 (638)
T PRK10636 310 NPLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLE 386 (638)
T ss_pred CceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchh
Confidence 446999999999964 3699999999999999999999999999999999999999999999864 699999975
Q ss_pred cC-CCCCHHHHhhc-CCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 668 WI-QSGSIRDNILY-GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 668 ~i-~~~ti~eni~~-g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
.+ .+.|+.+++.. ......++..++++.+++..+.. ..+..+|||||||||+||||++++|+++||||
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~----------~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKV----------TEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHh----------cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 23 34588888742 22223455667777777643211 24667899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE-EecChHHHH
Q 000671 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1361)
||++||+.+...+.+.+.. . . .|+|+||||++++.. ||+|++|++|+++ +.|+++++.
T Consensus 457 Pt~~LD~~~~~~l~~~L~~-~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 457 PTNHLDLDMRQALTEALID-F-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCCCCHHHHHHHHHHHHH-c-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999998765543 3 3 499999999999876 8999999999997 789999874
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=290.91 Aligned_cols=207 Identities=22% Similarity=0.380 Sum_probs=173.2
Q ss_pred CcEEEEeeEEEeCCCC--------CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000671 593 RSVKIQEGNFSWDPEL--------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~--------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------ 658 (1361)
..++.+|+...|+-+. ...+.+++||++++||.++|||.+|||||||-.+|++++++. |+|.+.|
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 4567778777775331 234789999999999999999999999999999999999887 9999887
Q ss_pred ----------eEEEEecCCc---CCCCCHHHHhhcCCCC------C---HHHHHHHHHHhcchHHHhcCCCCCCccccCC
Q 000671 659 ----------SIAYVSQTSW---IQSGSIRDNILYGKPM------D---KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1361)
Q Consensus 659 ----------~iayv~Q~~~---i~~~ti~eni~~g~~~------~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 716 (1361)
++-.|+|+|+ -+.+||.+-|.-|... + +++..++++..+|+.... ...
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r----------~RY 423 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR----------NRY 423 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh----------hcC
Confidence 4889999996 2568999998766321 2 345566677778876543 367
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCC
Q 000671 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1361)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1361)
+.+.||||||||+||||+.-+|++++|||||||||..++.++.+.+..... .|-+-+++|||+..++. ||+|+||++|
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~G 503 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence 789999999999999999999999999999999999999999886654433 47799999999999987 8999999999
Q ss_pred eEEEecChHHHHhcCc
Q 000671 795 QITQSGNYQELLLAGT 810 (1361)
Q Consensus 795 ~i~~~g~~~~l~~~~~ 810 (1361)
+|+|+|+.+++.++..
T Consensus 504 kiVE~G~~~~if~~P~ 519 (534)
T COG4172 504 KIVEQGPTEAVFANPQ 519 (534)
T ss_pred EEeeeCCHHHHhcCCC
Confidence 9999999999987653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=329.73 Aligned_cols=198 Identities=25% Similarity=0.406 Sum_probs=164.3
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCcCC
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ 670 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~i~ 670 (1361)
..++++|++++|+.+ .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ +|||++|++. .
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~-~ 583 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV-D 583 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc-c
Confidence 469999999999642 3589999999999999999999999999999999999999999999876 5999999873 3
Q ss_pred CCCHHHHhhc-----CCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 671 SGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 671 ~~ti~eni~~-----g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
..++.+|... .....+++++++++.+++..+.. ..++.+||||||||++||||++.+|+++||||
T Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~----------~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE 653 (718)
T PLN03073 584 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653 (718)
T ss_pred cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh----------cCCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3455555431 11234667788888888864432 14567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE-EecChHHHH
Q 000671 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1361)
||++||+.+...+.+.+... + .|+|+||||++++.. ||++++|++|+++ ..|+++++.
T Consensus 654 PT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 654 PSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred CCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999999999887654332 3 499999999999876 8999999999998 788887753
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=331.41 Aligned_cols=202 Identities=25% Similarity=0.388 Sum_probs=170.9
Q ss_pred cEEEEeeEEEeCCCC-CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
.++++|+++.|+... ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|++.++|
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 488999999996422 24689999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEecCCcCCC-CCHHHHhhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 ---SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 ---~iayv~Q~~~i~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.++|++|++.+++ .|+.||+.++.. .. +++..+.++.+++.+.++ .++.+||||||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~-----------~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVE-----------YQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhc-----------CCcccCCHHHHHH
Confidence 3799999998764 699999986421 11 224455666666654333 4567899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeEEEecChHHHH
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1361)
++||||++++|++++|||||++||+.+.+.+.+.+.+...+++|+|++||+++.+..||++++|++|+++++|+.++..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 9999999999999999999999999999998876654444689999999999998889999999999999999988764
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=326.33 Aligned_cols=193 Identities=23% Similarity=0.315 Sum_probs=164.5
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcC-CC
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI-QS 671 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i-~~ 671 (1361)
..++++|++++|+. ..|+++|++|++||+++|+|+||||||||+++|+|+++|++|+|.++-+++|+||++.. ++
T Consensus 339 ~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~ 414 (590)
T PRK13409 339 TLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYD 414 (590)
T ss_pred eEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCC
Confidence 35899999999963 25999999999999999999999999999999999999999999887789999999754 67
Q ss_pred CCHHHHhhcCCC-CC-HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000671 672 GSIRDNILYGKP-MD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1361)
Q Consensus 672 ~ti~eni~~g~~-~~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~sa 749 (1361)
.||+||+.++.. +. +...+++++..++.+..+ ....+|||||||||+||||+.++|++|||||||++
T Consensus 415 ~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-----------~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~ 483 (590)
T PRK13409 415 GTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-----------KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAH 483 (590)
T ss_pred CcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 899999987532 22 334567777777764333 56678999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecC
Q 000671 750 VDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1361)
Q Consensus 750 lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1361)
||+.+...+.+.+.+... +++|+|+||||++++.. ||++++|++ ++...|+
T Consensus 484 LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 484 LDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999999876655444 48999999999999876 899999965 7777776
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=329.79 Aligned_cols=200 Identities=24% Similarity=0.376 Sum_probs=164.0
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCC--
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-- 667 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~-- 667 (1361)
+..++++|++++|+. .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++. .|||++|++
T Consensus 317 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~ 393 (635)
T PRK11147 317 KIVFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAE 393 (635)
T ss_pred CceEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccc
Confidence 346899999999964 3599999999999999999999999999999999999999999999843 599999985
Q ss_pred cCCCCCHHHHhhcCCC-C--C--HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 000671 668 WIQSGSIRDNILYGKP-M--D--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1361)
Q Consensus 668 ~i~~~ti~eni~~g~~-~--~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ill 742 (1361)
...+.|+.||+.++.+ . + ..+..+.++.+++..+. ...+..+||||||||++||||++.+|+++|
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGekqRl~la~al~~~p~lLl 463 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKR----------AMTPVKALSGGERNRLLLARLFLKPSNLLI 463 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHH----------HhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3356799999987532 1 2 23344555555553221 124567899999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEe-CCeEE-EecChHHHHh
Q 000671 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE-GGQIT-QSGNYQELLL 807 (1361)
Q Consensus 743 LDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~-~G~i~-~~g~~~~l~~ 807 (1361)
|||||++||+.+.+.+.+.+ ... +.|+|+||||++++.. ||+|++|+ +|++. +.|+|++.++
T Consensus 464 LDEPt~~LD~~~~~~l~~~l-~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 464 LDEPTNDLDVETLELLEELL-DSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred EcCCCCCCCHHHHHHHHHHH-HhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999998876543 332 4599999999999876 89999998 89987 5789988753
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=275.20 Aligned_cols=188 Identities=27% Similarity=0.361 Sum_probs=165.2
Q ss_pred CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecC--CcCCCCCHHHHhhc-----C
Q 000671 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT--SWIQSGSIRDNILY-----G 681 (1361)
Q Consensus 609 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~--~~i~~~ti~eni~~-----g 681 (1361)
...+|+||||++.+||.++|+|+|||||||||+.|.|.++|++|+|.++|+|++.-.- ..-++.|-||||.+ |
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 3468999999999999999999999999999999999999999999999999976654 34467799999975 2
Q ss_pred C--CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHH
Q 000671 682 K--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759 (1361)
Q Consensus 682 ~--~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~ 759 (1361)
. ..-+++++++++-..|.+.++ .+..+.|-|++.|++.|-|...+|||||+||.++.-|+.-.++-.
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~-----------~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~ 187 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFID-----------QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhh-----------CchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence 2 233567888888888887765 467899999999999999999999999999999999999888766
Q ss_pred HHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHh
Q 000671 760 NECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 760 ~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
+.+.+...+++|+|+||||++.+++ ||++++|++|+|...|++++..+
T Consensus 188 ~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 188 ERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 6655555788999999999999987 99999999999999999999874
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=275.86 Aligned_cols=152 Identities=25% Similarity=0.303 Sum_probs=132.5
Q ss_pred EeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-eEEEEecCCcCCCCCHHH
Q 000671 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQSGSIRD 676 (1361)
Q Consensus 598 ~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-~iayv~Q~~~i~~~ti~e 676 (1361)
.|++++|+. .+++++ ++++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-------- 71 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-------- 71 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC--------
Confidence 477888864 357888 499999999999999999999999999999999999999998 5899998652
Q ss_pred HhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHH
Q 000671 677 NILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA 756 (1361)
Q Consensus 677 ni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~ 756 (1361)
||||||||++||||++.+|++++|||||++||+.+.+
T Consensus 72 -------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 72 -------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-cEEEEEccCchHHhh-cCeEEEEeCCeEEEe--cChHH
Q 000671 757 TLFNECVMAALEK-KTVILVTHQVEFLSE-VDRILVLEGGQITQS--GNYQE 804 (1361)
Q Consensus 757 ~i~~~~~~~~~~~-~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~--g~~~~ 804 (1361)
.+.+.+.....++ +|+|++||+++.+.. ||++++|+++..+.+ |.+..
T Consensus 109 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 109 NAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcc
Confidence 9887665544454 899999999999885 899999998766543 54443
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=322.47 Aligned_cols=196 Identities=21% Similarity=0.340 Sum_probs=156.9
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~------------- 659 (1361)
..|+++|+++.+ .++|+|+||++++||+++|+|+||||||||+++|.|+.+|++|+|.++|.
T Consensus 249 ~~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 249 VILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred cEEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 368999999873 24899999999999999999999999999999999999999999999861
Q ss_pred -EEEEecCCc----CCCCCHHHHhhcC-----CC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 660 -IAYVSQTSW----IQSGSIRDNILYG-----KP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 660 -iayv~Q~~~----i~~~ti~eni~~g-----~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
++|++|++- +.+.|+.+|+.+. .. .+. ++.++.++..++. +. ....+..+||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---------~~-~~~~~~~~LS 393 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVK---------TP-GHRTQIGSLS 393 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCcc---------CC-CcccccccCC
Confidence 899999852 3456777774321 11 111 1222333333321 11 1246778999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
||||||++||||+..+|+|+||||||++||+.+.+.+++.+.....+|+|+|++|||++++.. ||++++|++|+++..+
T Consensus 394 gGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~ 473 (491)
T PRK10982 394 GGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIV 473 (491)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999987665545568999999999999865 8999999999999877
Q ss_pred ChH
Q 000671 801 NYQ 803 (1361)
Q Consensus 801 ~~~ 803 (1361)
+.+
T Consensus 474 ~~~ 476 (491)
T PRK10982 474 DTK 476 (491)
T ss_pred ccc
Confidence 654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=323.58 Aligned_cols=194 Identities=24% Similarity=0.374 Sum_probs=158.1
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC-CCcEEEEcC-------------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-ISGTVNLYG------------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~-~~G~v~~~g------------- 658 (1361)
..++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.++ ++|+|.++|
T Consensus 259 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 259 PRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred ceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 46999999999964 3589999999999999999999999999999999998876 699998865
Q ss_pred -eEEEEecCCcC-C--CCCHHHHhhcCC----C----CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChH
Q 000671 659 -SIAYVSQTSWI-Q--SGSIRDNILYGK----P----MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1361)
Q Consensus 659 -~iayv~Q~~~i-~--~~ti~eni~~g~----~----~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgG 723 (1361)
.++|++|++.+ + ..++++++.++. . .. +++.+++++.+++..+.. ..++.+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgG 405 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA----------DAPFHSLSWG 405 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc----------cCchhhCCHH
Confidence 28999999754 2 247777775431 0 11 234566677776654221 2466789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCC-cEEEEEccCchHHhh--cCeEEEEeCCeEEEe
Q 000671 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQVEFLSE--VDRILVLEGGQITQS 799 (1361)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~-~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~ 799 (1361)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.....++ .|+|++|||++++.. +|++++|++|+|++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999987766554455 469999999999874 699999999998764
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=291.85 Aligned_cols=186 Identities=23% Similarity=0.290 Sum_probs=149.7
Q ss_pred eeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEE-----------EcC---------
Q 000671 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-----------LYG--------- 658 (1361)
Q Consensus 599 ~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~-----------~~g--------- 658 (1361)
+++++|+.+ .++|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|
T Consensus 5 ~~~~~y~~~--~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 5 EPVHRYGPN--SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred CcceeecCc--chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 678888643 35899999 4999999999999999999999999999999999995 434
Q ss_pred ------eEEEEecCCcCCCCCHHHHhhcCCC--CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 ------SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ------~iayv~Q~~~i~~~ti~eni~~g~~--~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.++|++|++..++.++.+|+.+... ..+++..++++.+++.+.. ..++.+||||||||++|
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVL-----------DRNIDQLSGGELQRVAI 150 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHH
Confidence 2688899876666677777665321 1234566777777664322 35677999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEe
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1361)
|||++.+|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||+|++|+ |++.+.
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence 999999999999999999999999999887665444458999999999999885 89999995 556543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=349.26 Aligned_cols=204 Identities=22% Similarity=0.332 Sum_probs=172.0
Q ss_pred cEEEEeeEEEeCCC-CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc---CCCcEEEEcC---------eE
Q 000671 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG---------SI 660 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~---~~~G~v~~~g---------~i 660 (1361)
.++++|++++++.+ ..+++|+|+|+++++||+++|+|||||||||||++|+|..+ +++|+|.++| .+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 47899999999632 23579999999999999999999999999999999999997 6889999988 38
Q ss_pred EEEecCCc-CCCCCHHHHhhcCC------CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHH
Q 000671 661 AYVSQTSW-IQSGSIRDNILYGK------PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 661 ayv~Q~~~-i~~~ti~eni~~g~------~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1361)
|||+|++. +++.||+||+.|+. ..++ ++.+++++..+|.+. .++.+|+.+.+||||||||++
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~d~~v~~~~~~LSgGqrqRl~ 911 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY-------ADAVVGVPGEGLNVEQRKRLT 911 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh-------CCCeeCCCCCCCCHHHhhHHH
Confidence 99999864 56789999999752 1222 234566666666432 356788888899999999999
Q ss_pred HHHHHccCCC-EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHH--hhcCeEEEEeCC-eEEEecChHH
Q 000671 730 LARAVYNDAD-IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL--SEVDRILVLEGG-QITQSGNYQE 804 (1361)
Q Consensus 730 lARal~~~~~-illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l--~~~d~i~~l~~G-~i~~~g~~~~ 804 (1361)
||||++.+|+ +++|||||||||+.++..+.+.+.+...+|+|+|++|||++.. ..+|++++|++| ++++.|+.++
T Consensus 912 Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 9999999997 9999999999999999999887766656799999999999863 568999999987 9999998743
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=293.69 Aligned_cols=205 Identities=23% Similarity=0.400 Sum_probs=143.1
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcCCC
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS 671 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i~~ 671 (1361)
...|.++|.++++.. .+.++|..|++.+|+.++|+|+|||||||+|++|.|-..|..-++. +...+++.---.
T Consensus 73 s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d----~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID----FYLLSREIEPSE 145 (614)
T ss_pred cccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc----hhhhcccCCCch
Confidence 357999999999874 4689999999999999999999999999999999998888655442 233333321111
Q ss_pred C-CHHHHhhcCCCCCHHHHHHHHH----Hhc---ch------------------HHHhc--CCCC-CCccccCCCCCCCh
Q 000671 672 G-SIRDNILYGKPMDKARYDKAIK----ACA---LD------------------KDINN--FDHG-DLTEIGQRGLNLSG 722 (1361)
Q Consensus 672 ~-ti~eni~~g~~~~~~~~~~~~~----~~~---l~------------------~dl~~--l~~g-d~t~ig~~g~~LSg 722 (1361)
. +++.-+.+.. -...+++...+ +|. .+ ..... ...| ......++..+|||
T Consensus 146 ~~av~~v~~~~~-~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~Sg 224 (614)
T KOG0927|consen 146 KQAVQAVVMETD-HERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSG 224 (614)
T ss_pred HHHHHHHhhhhH-HHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCc
Confidence 2 2332222211 01111111111 110 00 00000 0011 11223466789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCc-EEEEEccCchHHhh-cCeEEEEeCCe-EEEe
Q 000671 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSE-VDRILVLEGGQ-ITQS 799 (1361)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~-tvilvtH~~~~l~~-~d~i~~l~~G~-i~~~ 799 (1361)
|||.|++|||||..+|+++||||||++||..+..++-+.+.+ .++ ++++++|..++++. |.+|+-|++++ +.+.
T Consensus 225 GwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k---~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~ 301 (614)
T KOG0927|consen 225 GWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAK---YDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYE 301 (614)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHh---ccCceEEEEecchhhhhhHhhhhheecccceeeec
Confidence 999999999999999999999999999999999998654432 244 89999999999997 89999999999 6789
Q ss_pred cChHHHHh
Q 000671 800 GNYQELLL 807 (1361)
Q Consensus 800 g~~~~l~~ 807 (1361)
|+|+++..
T Consensus 302 Gnydqy~~ 309 (614)
T KOG0927|consen 302 GNYDQYVK 309 (614)
T ss_pred CCHHHHhh
Confidence 99988764
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-30 Score=271.76 Aligned_cols=150 Identities=26% Similarity=0.421 Sum_probs=123.7
Q ss_pred CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------EEEEecCCcCCCCCHHHHhhc
Q 000671 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWIQSGSIRDNILY 680 (1361)
Q Consensus 609 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~--------iayv~Q~~~i~~~ti~eni~~ 680 (1361)
..++|+|+||++++|++++|+|||||||||||+++++ ++|++.+.|. ++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q--------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQ--------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhH---------------
Confidence 3578999999999999999999999999999999974 6899887764 444443
Q ss_pred CCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCcCHHHHHHH
Q 000671 681 GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND--ADIYLFDDPFSAVDAHTAATL 758 (1361)
Q Consensus 681 g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~--~~illLDep~salD~~~~~~i 758 (1361)
.++++..++.. . ..++++.+||||||||++||||++.+ |+++||||||++||+...+.+
T Consensus 68 ---------~~~l~~~~L~~---------~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l 128 (176)
T cd03238 68 ---------LQFLIDVGLGY---------L-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQL 128 (176)
T ss_pred ---------HHHHHHcCCCc---------c-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHH
Confidence 23444444321 1 13467889999999999999999999 999999999999999999998
Q ss_pred HHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeCCeE
Q 000671 759 FNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1361)
Q Consensus 759 ~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1361)
.+.+.....+|+|+|++||+++.+..||++++|++|+.
T Consensus 129 ~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 129 LEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 87665544468999999999999888999999977654
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-27 Score=259.38 Aligned_cols=399 Identities=18% Similarity=0.196 Sum_probs=267.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHH
Q 000671 940 VYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAAS 1019 (1361)
Q Consensus 940 iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~ 1019 (1361)
.++++..+..+...+.......+|.+...+++.++.++++.+|+.-+++-..||++.++++|+.+|...+ ..+..+.+.
T Consensus 53 ~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~-s~lp~~~qa 131 (546)
T COG4615 53 EFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAF-SRLPELVQA 131 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehH-hhhHHHHHH
Confidence 3444444444455566677788899999999999999999999999999999999999999999998433 334556777
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHH
Q 000671 1020 GTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN 1099 (1361)
Q Consensus 1020 ~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~ 1099 (1361)
.+..+++.+.+++.+|++.++.+..+++..+.+.+.++..-+-.+...++...+.++++-.++|.+..+..+...+....
T Consensus 132 ~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~ 211 (546)
T COG4615 132 IILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHN 211 (546)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHh
Confidence 77888999999999999877776666655554443333333333334455667889999999999998877654433322
Q ss_pred HHHHHHHH--h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCccCHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 1100 YLKLVDID--A----SLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIP-RGYVAPGLVGLSLSYAFTLTGTQVFLSR 1172 (1361)
Q Consensus 1100 ~~~~~d~~--~----~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~~vl~~-~g~is~g~~gl~l~ya~~l~~~l~~l~~ 1172 (1361)
..-.-|.+ . +..........|-.+.+-.+..+. .++.. .+--+...+.....-.+-+-+|+..++.
T Consensus 212 ~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlv-------f~lal~~~w~st~~a~tivlvlLflr~pL~s~vg 284 (546)
T COG4615 212 NLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLV-------FWLALSLGWASTNVAATIVLVLLFLRTPLLSAVG 284 (546)
T ss_pred hhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHh
Confidence 21111111 1 111111123445443321111111 11110 1101111111122223445688999999
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCC
Q 000671 1173 WYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRT 1252 (1361)
Q Consensus 1173 ~~~~le~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrT 1252 (1361)
..-.+-++-+|.+||.++..-|+.+ ......+-++| -.||++||.|+|.++. -=+.-||++|+.||.|=|+|.+
T Consensus 285 ilP~l~~AqvA~~kiakle~~~~~a--~~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~N 358 (546)
T COG4615 285 ILPTLLTAQVAFNKIAKLELAPYKA--DFPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGN 358 (546)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCccc--cCCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCC
Confidence 9999999999999999876522211 11111222235 3699999999998764 3577899999999999999999
Q ss_pred CCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCC
Q 000671 1253 GSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNS 1332 (1361)
Q Consensus 1253 GSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~ 1332 (1361)
||||||++++|.|+|.|++|+|++||.+++.=++++.|+-++-|.-|-+||+.++ .|.+..+.+.|..-|++-.-.
T Consensus 359 GsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~LqrLel~ 434 (546)
T COG4615 359 GSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQRLELA 434 (546)
T ss_pred CCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999876 344457777776655543221
Q ss_pred CCCCcccccCCchhhhhhcccccccee
Q 000671 1333 RNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
..+.......+- -.+|-|||.++.
T Consensus 435 ~ktsl~d~~fs~---~kLStGQkKRlA 458 (546)
T COG4615 435 HKTSLNDGRFSN---LKLSTGQKKRLA 458 (546)
T ss_pred hhhcccCCcccc---cccccchHHHHH
Confidence 222221111111 136778887753
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-30 Score=264.16 Aligned_cols=189 Identities=29% Similarity=0.397 Sum_probs=154.7
Q ss_pred CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEecCCc---CCCC
Q 000671 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSW---IQSG 672 (1361)
Q Consensus 609 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~iayv~Q~~~---i~~~ 672 (1361)
++++|+++|++|++|+++.|+|.||+|||||+++|.|.++|++|+|.++| .++=|+|+|- ..+.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 46799999999999999999999999999999999999999999999988 2778999995 4678
Q ss_pred CHHHHhhcCC----C--CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000671 673 SIRDNILYGK----P--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1361)
Q Consensus 673 ti~eni~~g~----~--~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1361)
||.||+.... . +....-.+ ......+.+..++.|-...++.+..-|||||||-++|+.|..+.|+|++|||=
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~--~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNER--RRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHH--HHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 9999997531 1 11100000 01112234566677776677788888999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhcC-CcEEEEEccCchHH-hhcCeEEEEeCCeEEEe
Q 000671 747 FSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFL-SEVDRILVLEGGQITQS 799 (1361)
Q Consensus 747 ~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~ 799 (1361)
|+||||+++..+++.-.+...+ +-|.++|||+++.. ..-+|.++|++|+|+.+
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 9999999999998876555444 56999999999874 55799999999999964
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-30 Score=272.76 Aligned_cols=197 Identities=23% Similarity=0.386 Sum_probs=161.6
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------ 658 (1361)
.+.-|+++|+++.|.. +++|+|||++|++||..+|+|+|||||||||+.+.|+.+|.+|.+.+-|
T Consensus 28 ~~~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~el 104 (257)
T COG1119 28 NEPLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104 (257)
T ss_pred CcceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHH
Confidence 3456999999999975 4699999999999999999999999999999999999999999998765
Q ss_pred --eEEEEecC---CcCCCCCHHHHhhcCC---------CCCHHHHH---HHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 659 --SIAYVSQT---SWIQSGSIRDNILYGK---------PMDKARYD---KAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 659 --~iayv~Q~---~~i~~~ti~eni~~g~---------~~~~~~~~---~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
+||||+-+ -...+.+++|-|+-|. +++++.++ ..++.+++.. + .++.-.+||
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-l----------a~r~~~~LS 173 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-L----------ADRPFGSLS 173 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-h----------ccCchhhcC
Confidence 48999853 2334668888887431 34444443 3444454443 1 225567899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC--CcEEEEEccCchHHhhc-CeEEEEeCCeEEE
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSEV-DRILVLEGGQITQ 798 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~~-d~i~~l~~G~i~~ 798 (1361)
-|||||+-||||++.+|.++|||||+++||...++.+.+.+...... +.|+|+|||+.+.++.| ++++.+++|+++.
T Consensus 174 ~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 174 QGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 99999999999999999999999999999999998888776655443 78999999999998875 9999999999998
Q ss_pred ecC
Q 000671 799 SGN 801 (1361)
Q Consensus 799 ~g~ 801 (1361)
+|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 874
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-29 Score=242.72 Aligned_cols=183 Identities=23% Similarity=0.356 Sum_probs=152.1
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCC---CcEEEEcC-----------eE
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG-----------SI 660 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~---~G~v~~~g-----------~i 660 (1361)
..++|++..-+. .-.|-|+|++|.+||++-+.||+|||||||++-+.|.+.+. +|++.+++ ++
T Consensus 3 l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~ 79 (213)
T COG4136 3 LCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQI 79 (213)
T ss_pred eeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhe
Confidence 457788866543 45899999999999999999999999999999999998864 79998876 59
Q ss_pred EEEecCCcCCCC-CHHHHhhcCCCCC------HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHH
Q 000671 661 AYVSQTSWIQSG-SIRDNILYGKPMD------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1361)
Q Consensus 661 ayv~Q~~~i~~~-ti~eni~~g~~~~------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1361)
|+.+|++|+|.. +|-+|++|..|-+ +...+.+++..+|...+.+. +.+||||||.||+|-|+
T Consensus 80 GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----------P~tlSGGQrARvaL~R~ 148 (213)
T COG4136 80 GILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQD-----------PATLSGGQRARVALLRA 148 (213)
T ss_pred eeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcC-----------hhhcCcchHHHHHHHHH
Confidence 999999999865 9999999986632 23345677778887766644 45899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhhcCeEEEE
Q 000671 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVL 791 (1361)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l 791 (1361)
+++.|+.++||||||.||..-+.+..+.++.... .|-.+|+||||.+.++.-.||+.|
T Consensus 149 Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 149 LLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999988887666665543 588999999999988854666554
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-29 Score=250.15 Aligned_cols=189 Identities=23% Similarity=0.351 Sum_probs=156.5
Q ss_pred CcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEecCCcC-CCC--CH
Q 000671 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWI-QSG--SI 674 (1361)
Q Consensus 611 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~iayv~Q~~~i-~~~--ti 674 (1361)
.+.+.+||++++|+..+|+|.||||||||.++|.|.++|++|+|.++| .|-+++|+|.- +|- .|
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 478999999999999999999999999999999999999999999987 48999999853 332 12
Q ss_pred HHHhhcC----CCCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 000671 675 RDNILYG----KPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1361)
Q Consensus 675 ~eni~~g----~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1361)
-.-+-+. ..++ .+++.+.++..+|.+|-.. -++..||-||||||+|||||.-+|+|++.||.
T Consensus 107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan----------~~~~~la~~QKQRVaLARALIL~P~iIIaDeA 176 (267)
T COG4167 107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHAN----------YYPHMLAPGQKQRVALARALILRPKIIIADEA 176 (267)
T ss_pred hhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccc----------cchhhcCchhHHHHHHHHHHhcCCcEEEehhh
Confidence 1111121 1222 3455667777777666443 35678999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcC
Q 000671 747 FSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 747 ~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1361)
+.+||...+.++.+..+... ..|-.-|.|+.++..+++ +|.|+||++|+++|.|+..+++...
T Consensus 177 l~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P 241 (267)
T COG4167 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP 241 (267)
T ss_pred hhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCC
Confidence 99999999999987666543 348899999999999998 7999999999999999999998754
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=331.33 Aligned_cols=204 Identities=24% Similarity=0.371 Sum_probs=168.1
Q ss_pred cEEEEeeEEEeCCC----------CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc--CCCcEEEEcC---
Q 000671 594 SVKIQEGNFSWDPE----------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--KISGTVNLYG--- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~----------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~--~~~G~v~~~g--- 658 (1361)
.+.++|+++..+.. ....+|+|+|+++++|++++|+|||||||||||++|+|..+ +.+|+|.++|
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 58899999887532 12369999999999999999999999999999999999976 3789999987
Q ss_pred -------eEEEEecCCcC-CCCCHHHHhhcCC------CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCC-CC
Q 000671 659 -------SIAYVSQTSWI-QSGSIRDNILYGK------PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRG-LN 719 (1361)
Q Consensus 659 -------~iayv~Q~~~i-~~~ti~eni~~g~------~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g-~~ 719 (1361)
.+|||+|++.+ .+.||+||+.|+. ..+. ++.+++++..+|.+.. ++.+|..+ ..
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~-------~~~vg~~~~~~ 1019 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLK-------DAIVGLPGVTG 1019 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHh-------CCccCCCCCCC
Confidence 28999999755 5679999998742 1222 2356677777775432 34555444 68
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchH-H-hhcCeEEEEeC-CeE
Q 000671 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-L-SEVDRILVLEG-GQI 796 (1361)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l-~~~d~i~~l~~-G~i 796 (1361)
||||||||++|||+|+.+|++++|||||||||+.++..+.+.+.+...+|+|+|++||+++. + ..+|++++|++ |++
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 99999999999999999999999999999999999999988776665678999999999984 3 56899999986 899
Q ss_pred EEecChHH
Q 000671 797 TQSGNYQE 804 (1361)
Q Consensus 797 ~~~g~~~~ 804 (1361)
++.|+..+
T Consensus 1100 v~~G~~~~ 1107 (1470)
T PLN03140 1100 IYSGPLGR 1107 (1470)
T ss_pred EEECCccc
Confidence 99998653
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=257.02 Aligned_cols=142 Identities=39% Similarity=0.606 Sum_probs=126.8
Q ss_pred EEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------EEEE
Q 000671 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------IAYV 663 (1361)
Q Consensus 597 ~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~-------------iayv 663 (1361)
++|++|.|+.. ++++++|+++++|++++|+|+||||||||+++|.|++++.+|+|.++|. ++|+
T Consensus 2 ~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 67899999643 5899999999999999999999999999999999999999999999873 3444
Q ss_pred ecCCcCCCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 000671 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1361)
Q Consensus 664 ~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illL 743 (1361)
+| ||||||||++||||++.+|++++|
T Consensus 79 ~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 79 PQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred ee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44 999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCe
Q 000671 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1361)
Q Consensus 744 Dep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1361)
||||++||+.+...+.+.+.....+++|+|++||++++++. +|++++|++|+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999877665444446899999999999988 59999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-27 Score=286.29 Aligned_cols=202 Identities=25% Similarity=0.400 Sum_probs=171.7
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCC-
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS- 667 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~- 667 (1361)
.+..++++|++++|+.+ +++++++||.|.+|+.++|+||||+||||||+.|+|...|.+|+|.+.. ++||.+|+.
T Consensus 318 g~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~ 395 (530)
T COG0488 318 GKLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD 395 (530)
T ss_pred CCeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhh
Confidence 45679999999999764 5799999999999999999999999999999999999999999998765 599999985
Q ss_pred -cCCCCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 668 -WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 668 -~i~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
+..+.|+.|++.-..+ ..+..++..+..+.+..+-.. .+...||||||.|+.||+.+.++|.+|||||
T Consensus 396 ~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~----------~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE 465 (530)
T COG0488 396 ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQE----------KPVGVLSGGEKARLLLAKLLLQPPNLLLLDE 465 (530)
T ss_pred hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHh----------CchhhcCHhHHHHHHHHHHhccCCCEEEEcC
Confidence 3456699999987654 346778888888888765442 5677899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEe-cChHHHHhc
Q 000671 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS-GNYQELLLA 808 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~-g~~~~l~~~ 808 (1361)
||++||..+...+-+.+. . -.-|+|+||||.+++.. |++|+.+++ ++... |+|++..+.
T Consensus 466 PTNhLDi~s~~aLe~aL~-~--f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 466 PTNHLDIESLEALEEALL-D--FEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CCccCCHHHHHHHHHHHH-h--CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 999999999988754332 1 13499999999999988 799999999 66654 898887653
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=242.66 Aligned_cols=201 Identities=21% Similarity=0.343 Sum_probs=167.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
..++++|++.+++. -.+|+|+||++.+||+-+|+||||+||||++-.|.|-.+|+.|+|.++|
T Consensus 4 ~iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr 80 (249)
T COG4674 4 IILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80 (249)
T ss_pred ceEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHH
Confidence 35788999999874 4689999999999999999999999999999999999999999999988
Q ss_pred -eEEEEecCCcCC-CCCHHHHhhcCCC---------------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP---------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 659 -~iayv~Q~~~i~-~~ti~eni~~g~~---------------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
.||-=+|.|-+| +.||+||+..... ..++++++++...+|.+.-. .....||
T Consensus 81 ~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~-----------~~A~~LS 149 (249)
T COG4674 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD-----------RLAALLS 149 (249)
T ss_pred hccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhh-----------hhhhhhc
Confidence 277789999876 6699999864321 22346777777777654322 3456899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEec
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1361)
-||||++.|+.-+.++|++++||||.+|+-.......- ++++...+++++++|.||+++++. ||+|-||+.|.+...|
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ta-eLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA-ELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHH-HHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecc
Confidence 99999999999999999999999999999444444433 455666678899999999999987 8999999999999999
Q ss_pred ChHHHHhc
Q 000671 801 NYQELLLA 808 (1361)
Q Consensus 801 ~~~~l~~~ 808 (1361)
+.+++.++
T Consensus 229 sld~v~~d 236 (249)
T COG4674 229 SLDEVQND 236 (249)
T ss_pred cHHHhhcC
Confidence 99998654
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-26 Score=285.86 Aligned_cols=191 Identities=24% Similarity=0.358 Sum_probs=154.1
Q ss_pred CCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC---CCcEEEEcC----------eEEEEecCCc-CCCCCHH
Q 000671 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG----------SIAYVSQTSW-IQSGSIR 675 (1361)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~---~~G~v~~~g----------~iayv~Q~~~-i~~~ti~ 675 (1361)
..+|+|++.-+++|+.+.+.||.||||||||+++.|..+. ..|+|..+| .++|++|+-+ +...|||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4689999999999999999999999999999999999864 356888876 5999999865 5678999
Q ss_pred HHhhcCC-------CCC---HHHHH-----HHHHHhcchHHHhcCCCCCCccccCCC-CCCChHHHHHHHHHHHHccCCC
Q 000671 676 DNILYGK-------PMD---KARYD-----KAIKACALDKDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDAD 739 (1361)
Q Consensus 676 eni~~g~-------~~~---~~~~~-----~~~~~~~l~~dl~~l~~gd~t~ig~~g-~~LSgGQkqRv~lARal~~~~~ 739 (1361)
|-+.|.. .++ +.+|. .+++..+ |.+..+|.+|... ...|||||.||++|-++..++.
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilG-------L~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~ 280 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILG-------LDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPAS 280 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhC-------chhhccceecccccccccCcccceeeeeeeeecCcc
Confidence 9998842 122 22222 2223333 4455677888665 5799999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCch--HHhhcCeEEEEeCCeEEEecChHHHHh
Q 000671 740 IYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVE--FLSEVDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~--~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1361)
++.+||+|.|||..++-++.+.+.... .-+.|.++.-|+.. .....|.|.+|.+|+++++|+.++.+.
T Consensus 281 ~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 281 ILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999988876554433 34778999989875 356689999999999999999998863
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-28 Score=258.38 Aligned_cols=189 Identities=23% Similarity=0.325 Sum_probs=148.9
Q ss_pred CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe------------EEEEec---C-CcCCCC
Q 000671 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAYVSQ---T-SWIQSG 672 (1361)
Q Consensus 609 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~------------iayv~Q---~-~~i~~~ 672 (1361)
..++.+||||+||+|++++.+|+||+||||+||+|.|.+.|++|.|.++|. ++||.- + -|-.+
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp- 114 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP- 114 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech-
Confidence 346899999999999999999999999999999999999999999999983 555541 2 23222
Q ss_pred CHHHHhhcC---CCCCHHHH----HHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 673 SIRDNILYG---KPMDKARY----DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 673 ti~eni~~g---~~~~~~~~----~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
+.|-+.-. .+...++| +...+..+++..+. .+...||-|||.|+.||.||+++|+|++|||
T Consensus 115 -~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk-----------~~vr~LSlGqRmraeLaaaLLh~p~VLfLDE 182 (325)
T COG4586 115 -ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLK-----------WPVRKLSLGQRMRAELAAALLHPPKVLFLDE 182 (325)
T ss_pred -hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhh-----------hhhhhccchHHHHHHHHHHhcCCCcEEEecC
Confidence 33322211 12233333 34444444544443 5678999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhcCc
Q 000671 746 PFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1361)
||-+||..++..|.+.+.... .++.||+++||+++-+.. ||||+.|++|++++.|+.+++.++-+
T Consensus 183 pTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 183 PTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred CccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 999999999999877655433 358899999999998876 99999999999999999999876543
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-27 Score=294.46 Aligned_cols=207 Identities=27% Similarity=0.428 Sum_probs=175.6
Q ss_pred CcEEEEeeEEEeCCC--CCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccC---CCcEEEEcC---------
Q 000671 593 RSVKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG--------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~--~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~---~~G~v~~~g--------- 658 (1361)
..+.++|.+.+-+.+ ..+.+|+|||.++++||+.||.||+||||||||++|+|-.+. .+|+|.++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 457788888776554 246799999999999999999999999999999999999874 799999999
Q ss_pred -eEEEEecCCc-CCCCCHHHHhhcC------CCCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCC-CCCCChHHH
Q 000671 659 -SIAYVSQTSW-IQSGSIRDNILYG------KPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQR-GLNLSGGQK 725 (1361)
Q Consensus 659 -~iayv~Q~~~-i~~~ti~eni~~g------~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~-g~~LSgGQk 725 (1361)
..|||.|+.. +.+.||+|++.|. ...+ +++++++++..+|. +. .+|.||.. ...+|||||
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~------~~t~ig~~~~rgiSGGEr 176 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KC------ADTLIGNPGIRGLSGGER 176 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hh------ccceecCCCCCccccchh
Confidence 3899999865 5678999999874 2122 45677777777776 33 35666643 358999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchH--HhhcCeEEEEeCCeEEEecChH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF--LSEVDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~--l~~~d~i~~l~~G~i~~~g~~~ 803 (1361)
+||++|.-+..||.|++|||||||||+.++.++.+.+.+...+|||||++-|+++. ....|++++|.+|++++.|+++
T Consensus 177 kRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~ 256 (613)
T KOG0061|consen 177 KRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPR 256 (613)
T ss_pred hHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHH
Confidence 99999999999999999999999999999999998877777789999999999964 4668999999999999999998
Q ss_pred HHH
Q 000671 804 ELL 806 (1361)
Q Consensus 804 ~l~ 806 (1361)
++.
T Consensus 257 ~~~ 259 (613)
T KOG0061|consen 257 ELL 259 (613)
T ss_pred HHH
Confidence 775
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-27 Score=259.95 Aligned_cols=180 Identities=22% Similarity=0.290 Sum_probs=124.1
Q ss_pred CCCcccceeEEecCCeEEEEeCCCCCCHHHHH-HHHhC--------------------CccCCCcEEEEcC-eEEEEecC
Q 000671 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL-YAILG--------------------EIPKISGTVNLYG-SIAYVSQT 666 (1361)
Q Consensus 609 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl-~~llg--------------------~~~~~~G~v~~~g-~iayv~Q~ 666 (1361)
+.++|+|+||++++||+++|+|+||||||||+ ..+.+ ...|..+. +.| ..++..|+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 84 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDS--IEGLSPAIAIDQ 84 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccc--ccCCCceEEecC
Confidence 35689999999999999999999999999996 33221 11111111 112 23444444
Q ss_pred CcC-C--CCCHH---HHhhc-CCCCC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHcc
Q 000671 667 SWI-Q--SGSIR---DNILY-GKPMD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1361)
Q Consensus 667 ~~i-~--~~ti~---eni~~-g~~~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~ 736 (1361)
+.. . ..++. +...+ ...+. .....+.++.+++.+. ....++.+||||||||++||||++.
T Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 85 KTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYL----------TLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcc----------cccCccCcCCHHHHHHHHHHHHHHh
Confidence 431 1 12322 21111 10011 1111233333333211 1346788999999999999999999
Q ss_pred CC--CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEE------eCCeEEEec
Q 000671 737 DA--DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL------EGGQITQSG 800 (1361)
Q Consensus 737 ~~--~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l------~~G~i~~~g 800 (1361)
+| +++||||||++||+.+.+.+.+.+.....+|.|+|++||+++.+..||++++| ++|+|+++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 59999999999999999999887665545689999999999998889999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-27 Score=272.02 Aligned_cols=145 Identities=39% Similarity=0.660 Sum_probs=131.2
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcC
Q 000671 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1361)
Q Consensus 1214 G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1361)
|+|+|+||+++|+++.+++|+|+||+|++||++|||||||||||||+++|+|+++ .+|+|+|||+|+.+++++++|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 6899999999997656679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred ceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCC--CCC-cccccCCchhhhhhcccccccee
Q 000671 1294 SIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSR--NSR-IDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1294 siIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++|||+|.+|++|+++||+|++..+++++|++++.++-.. +.. -++|+.-.+.|.++|.||||+|.
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~ 148 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMC 148 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 9999999999999999999998889999999999885321 222 25677777889999999999985
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-27 Score=276.81 Aligned_cols=177 Identities=18% Similarity=0.236 Sum_probs=140.8
Q ss_pred HHhhHHHHHHHhhcCCCCCCCCCC------C---CCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEE
Q 000671 1179 NYIISVERIKQFMHIPPEPPAIVE------D---KRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVV 1249 (1361)
Q Consensus 1179 ~~~~sveRi~e~~~~~~E~~~~~~------~---~~~~~~wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIV 1249 (1361)
..+++++|+.+|+..+.|.....+ . ...+..||..|.|+|+|++++|+++.+++|+|+||+|++||++|||
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 456778888888877665432111 1 0113469999999999999999765567999999999999999999
Q ss_pred cCCCCcHHHHHHHHhcccC-----CCCcEEEEcCeeCC--CCChHHHhhcCceecCcccccccchhhhcC--C-CCCCCH
Q 000671 1250 GRTGSGKTTLISALFRLVE-----PAGGSILIDGVDIC--SMGLKDLRVKLSIIPQEPTLFRGSVRTNLD--P-LGLYSD 1319 (1361)
Q Consensus 1250 GrTGSGKSTL~~~L~R~~e-----p~~G~I~IDGvDI~--~i~l~~LR~~isiIpQdp~LF~GTIR~NLd--P-~~~~sD 1319 (1361)
||||||||||+++|+|+++ |.+|+|.|||+||+ ++++.++|+++++|||+|.+|++|+|+||+ | +..++|
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~ 194 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND 194 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh
Confidence 9999999999999999997 57999999999997 567789999999999999999999999998 4 334666
Q ss_pred HHH-----HHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1320 DEI-----WKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1320 eeI-----~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++. .++++.++-.. +++..-.+.+-++|.||||+|.
T Consensus 195 ~~~~~~~~~~~l~~~~L~~----~l~~~~~~~~~~LSgGqkqRl~ 235 (329)
T PRK14257 195 RKILEKIVEKSLKSAALWD----EVKDDLDKAGNALSGGQQQRLC 235 (329)
T ss_pred HHHHHHHHHHHHHHcCCcc----hhhhhhhCCcccCCHHHHHHHH
Confidence 665 44566665210 2334456789999999999974
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-26 Score=238.77 Aligned_cols=201 Identities=24% Similarity=0.338 Sum_probs=164.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCC--ccCCCcEEEEcCe------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYGS------------ 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~--~~~~~G~v~~~g~------------ 659 (1361)
-++++|.+.+-..+ +++|+++||+|++||+.+|.||||||||||.++|+|. |++++|+|.++|.
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 36788888877542 4699999999999999999999999999999999998 4789999999982
Q ss_pred --EEEEecCCc-CCCCCHHHHhhcCC----CC---C---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHH
Q 000671 660 --IAYVSQTSW-IQSGSIRDNILYGK----PM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1361)
Q Consensus 660 --iayv~Q~~~-i~~~ti~eni~~g~----~~---~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkq 726 (1361)
|...+|.|. +..-|+.+-+.-+. .. . .++.++.++..++++++..- .+ ...+|||+|.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R------~v---N~GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER------YV---NEGFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc------cc---CCCcCcchHH
Confidence 888999986 55568888876431 11 1 33455566666776644321 11 2469999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhc--CeEEEEeCCeEEEecChHH
Q 000671 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV--DRILVLEGGQITQSGNYQE 804 (1361)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~--d~i~~l~~G~i~~~g~~~~ 804 (1361)
|..|+.+++.+|++.+||||-||||...-+.+.+.+.....++.+++++||.-..+... |++.+|-+|+|+.+|.+ +
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 99999999999999999999999999999988766555556799999999999999875 99999999999999998 6
Q ss_pred HH
Q 000671 805 LL 806 (1361)
Q Consensus 805 l~ 806 (1361)
+.
T Consensus 231 l~ 232 (251)
T COG0396 231 LA 232 (251)
T ss_pred HH
Confidence 64
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=263.84 Aligned_cols=192 Identities=27% Similarity=0.412 Sum_probs=139.4
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEE-------cCeEEEEe
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL-------YGSIAYVS 664 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~-------~g~iayv~ 664 (1361)
..+|.++|.+.+|.. +..|++-++++..|-.+++||+||+||||||++|.. |+|.. .|.--..-
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~ 148 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEAL 148 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHH
Confidence 356888888888874 468999999999999999999999999999999987 33321 11111111
Q ss_pred cCCcCCCCCHHHHhhcCC-CC----C-HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCC
Q 000671 665 QTSWIQSGSIRDNILYGK-PM----D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 665 Q~~~i~~~ti~eni~~g~-~~----~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1361)
|+- +...+-+.-.+.-. .. . ++-|.+++.-.+..++....| ..+||||-|-|++||||+..+|
T Consensus 149 ~~~-l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLARAlf~~p 217 (582)
T KOG0062|consen 149 QSV-LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALARALFAKP 217 (582)
T ss_pred hhh-hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHHHHhcCC
Confidence 111 12223333332211 11 1 233555777778888777644 4579999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE-EecChHHHH
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1361)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1361)
|||||||||+.||.....++-+.+. . .+.|+|+|+||..||.. |..|+.+++-++- +.|++++..
T Consensus 218 DlLLLDEPTNhLDv~av~WLe~yL~-t--~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 218 DLLLLDEPTNHLDVVAVAWLENYLQ-T--WKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred CEEeecCCcccchhHHHHHHHHHHh-h--CCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 9999999999999999999755432 2 24799999999999988 7888888886664 566666554
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-26 Score=254.84 Aligned_cols=182 Identities=24% Similarity=0.368 Sum_probs=130.8
Q ss_pred CcccceeEEecCCeEEEEeCCCCCCHHHHHHHHh--------CCc--cCCCcEEEE----cCeEEEEecCC---------
Q 000671 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL--------GEI--PKISGTVNL----YGSIAYVSQTS--------- 667 (1361)
Q Consensus 611 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ll--------g~~--~~~~G~v~~----~g~iayv~Q~~--------- 667 (1361)
..|+|+|++||.|.+++|+|.+|||||||++.++ +.. .|..++... -..+-+|.|.|
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3699999999999999999999999999999663 111 122121110 01233333333
Q ss_pred --------------------------------------cCCCCCHHHHhhcCCCCC-HHHHHHHHHHhcchHHHhcCCCC
Q 000671 668 --------------------------------------WIQSGSIRDNILYGKPMD-KARYDKAIKACALDKDINNFDHG 708 (1361)
Q Consensus 668 --------------------------------------~i~~~ti~eni~~g~~~~-~~~~~~~~~~~~l~~dl~~l~~g 708 (1361)
.+.+.|+.||+.|...+. .++..+.++.++|.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~--------- 159 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLG--------- 159 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCc---------
Confidence 234556666655432211 12223333333332
Q ss_pred CCccccCCCCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhc
Q 000671 709 DLTEIGQRGLNLSGGQKQRIQLARAVYND---ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV 785 (1361)
Q Consensus 709 d~t~ig~~g~~LSgGQkqRv~lARal~~~---~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~ 785 (1361)
+. ..+++..+||||||||++||||+.++ |++++|||||++||++..+.+.+.+.+...+|.|+|++||+++++..|
T Consensus 160 ~l-~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 160 YI-KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred hh-hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 21 23577889999999999999999996 799999999999999999999876655555689999999999999889
Q ss_pred CeEEEE------eCCeEEEecCh
Q 000671 786 DRILVL------EGGQITQSGNY 802 (1361)
Q Consensus 786 d~i~~l------~~G~i~~~g~~ 802 (1361)
|++++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-26 Score=225.83 Aligned_cols=217 Identities=24% Similarity=0.334 Sum_probs=163.9
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--------------- 658 (1361)
-+++.+.+..|.+. ...+|+||++.|||..+|||.+||||||||++|.+-+.|+.|+|..+.
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 46788899999764 368999999999999999999999999999999999999999998742
Q ss_pred -------eEEEEecCCcC---CCCCHHHHhhcC-CCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH
Q 000671 659 -------SIAYVSQTSWI---QSGSIRDNILYG-KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1361)
Q Consensus 659 -------~iayv~Q~~~i---~~~ti~eni~~g-~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1361)
.-|+|-|+|-- ...|.-.||--- ...-...|-++-... .+.++..+ =|.+.|.+.+.+.|||++||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a--~~WL~~VE-I~~~RiDD~PrtFSGGMqQR 159 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEA--QDWLEEVE-IDLDRIDDLPRTFSGGMQQR 159 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHH--HHHHHhcc-cCcccccCcccccchHHHHH
Confidence 37999999842 222333444110 001112222221111 11222211 24456778899999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHH
Q 000671 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1361)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1361)
+.|||-+...|+++++||||-+||..++..+.+.+..... -+-.+|+||||+...+- +||..||++|+++|+|-.+.+
T Consensus 160 LQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrv 239 (258)
T COG4107 160 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRV 239 (258)
T ss_pred HHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccccc
Confidence 9999999999999999999999999999999875543332 37799999999999886 899999999999999998888
Q ss_pred HhcCc-hHHHHH
Q 000671 806 LLAGT-AFEQLV 816 (1361)
Q Consensus 806 ~~~~~-~~~~~~ 816 (1361)
+++.. .|.+++
T Consensus 240 LDDP~hPYTQLL 251 (258)
T COG4107 240 LDDPHHPYTQLL 251 (258)
T ss_pred ccCCCCchHHHH
Confidence 76543 455554
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=229.37 Aligned_cols=164 Identities=24% Similarity=0.352 Sum_probs=135.3
Q ss_pred CCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe------------EEEEecCCcC-CCCCHH
Q 000671 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAYVSQTSWI-QSGSIR 675 (1361)
Q Consensus 609 ~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~------------iayv~Q~~~i-~~~ti~ 675 (1361)
+..++.++||++.+||.+.|.|||||||||||++|.|+++|++|+|.++|. .-|+.-+|-+ ...|+.
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ 93 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTAL 93 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHH
Confidence 357899999999999999999999999999999999999999999999862 3455555555 467999
Q ss_pred HHhhcCCC----CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCcC
Q 000671 676 DNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751 (1361)
Q Consensus 676 eni~~g~~----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~salD 751 (1361)
||+.|-.+ -+.+...++++..+|.. ++.+ +...||-|||+||+|||-..+.+++.|||||+++||
T Consensus 94 ENL~F~~~~~~~~~~~~i~~Al~~vgL~g-~~dl----------p~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLD 162 (209)
T COG4133 94 ENLHFWQRFHGSGNAATIWEALAQVGLAG-LEDL----------PVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162 (209)
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHcCccc-cccc----------chhhcchhHHHHHHHHHHHcCCCCceeecCcccccC
Confidence 99998543 34577888999888863 3333 446799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccCchHHh
Q 000671 752 AHTAATLFNECVMAALEKKTVILVTHQVEFLS 783 (1361)
Q Consensus 752 ~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 783 (1361)
.+....+-........+|-.||++||+.--+.
T Consensus 163 k~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 163 KEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 99988654433345567889999999875543
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-26 Score=231.39 Aligned_cols=123 Identities=37% Similarity=0.603 Sum_probs=109.5
Q ss_pred ccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEecCCcCCC-CCHHHHh
Q 000671 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQS-GSIRDNI 678 (1361)
Q Consensus 613 L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------~iayv~Q~~~i~~-~ti~eni 678 (1361)
|+|+|+++++|++++|+|+||||||||+++|.|.++|++|+|.++| .++|++|++.+++ .|++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 6899999999999999999999999999999999999999999987 4999999987765 579999
Q ss_pred hcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000671 679 LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1361)
Q Consensus 679 ~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1361)
..+++++++++.+++... ..+.++.++.+||||||||++||||++++|++++||||||
T Consensus 80 -----~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLEDL-------LDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGGG-------TGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----cccccccccccccccccc-------cccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 345678888888877652 2346778889999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=286.39 Aligned_cols=94 Identities=27% Similarity=0.477 Sum_probs=83.6
Q ss_pred ccCCCCCCChHHHHHHHHHHHHc---cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEE
Q 000671 713 IGQRGLNLSGGQKQRIQLARAVY---NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1361)
Q Consensus 713 ig~~g~~LSgGQkqRv~lARal~---~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1361)
.++...+||||||||++||||++ .+|++|||||||++||++..+.+++.+.+...+|+|+|++||+++.+..+|+++
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi 882 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVL 882 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 35778899999999999999998 699999999999999999999998776655557899999999999997799999
Q ss_pred EEe------CCeEEEecChHHHH
Q 000671 790 VLE------GGQITQSGNYQELL 806 (1361)
Q Consensus 790 ~l~------~G~i~~~g~~~~l~ 806 (1361)
+|+ +|+++..|+++++.
T Consensus 883 ~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 883 ELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEccCCCCCCCEEEEeCCHHHHH
Confidence 996 78999988887764
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-25 Score=285.74 Aligned_cols=203 Identities=22% Similarity=0.341 Sum_probs=175.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g-------------- 658 (1361)
.++..+|.+..|+.... +.+++++.|++||+.++.|+|||||||++++|.|+.+|++|++.++|
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 57889999999986543 89999999999999999999999999999999999999999999866
Q ss_pred eEEEEecCCcC-CCCCHHHHhhcC-----CCC-C-HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHH
Q 000671 659 SIAYVSQTSWI-QSGSIRDNILYG-----KPM-D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1361)
Q Consensus 659 ~iayv~Q~~~i-~~~ti~eni~~g-----~~~-~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1361)
.+|||||+.-+ ...|.||++.+- .+. | ++..++.+++.+|.+..+ .+..++|||+|+|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~-----------~~~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYAN-----------KQVRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhc-----------cchhhCCCcchhhHHH
Confidence 39999998554 577999999762 221 1 234666777777766554 3467899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChHHHHhc
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
|-|+..+|++++||||++|+||+.++++++.+.....+++.+|++||.+++.+. |||+.+|.+|++...|+++++..+
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999999999999999998766555566799999999999987 899999999999999999999754
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-25 Score=221.29 Aligned_cols=190 Identities=24% Similarity=0.368 Sum_probs=147.4
Q ss_pred cEEEEeeEEEeCC----CCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------
Q 000671 594 SVKIQEGNFSWDP----ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658 (1361)
Q Consensus 594 ~i~~~~~~f~~~~----~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g----------- 658 (1361)
.+.++|++.++.- +-.-|+++|+||+++.||++++-||+|+||||||++|-|.|.|++|+|.+.-
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 3556666655532 1234789999999999999999999999999999999999999999998742
Q ss_pred ----------eEEEEecCC-cCCCCCHHHHhh-----cCCCCC--HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCC
Q 000671 659 ----------SIAYVSQTS-WIQSGSIRDNIL-----YGKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1361)
Q Consensus 659 ----------~iayv~Q~~-~i~~~ti~eni~-----~g~~~~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 720 (1361)
.||||+|.- .++.-+..|-+. .|-+-+ .++..+.+....+-+.+=.| .+.+.
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~L----------aPaTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSL----------APATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcC----------CCccc
Confidence 499999973 455555555443 233322 23344455555555554443 35789
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeC
Q 000671 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG 793 (1361)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~ 793 (1361)
|||++|||.|||+++.|-+|+||||||++||+.+.+.+.+.+.....+|..+|=+-||-+.=+. |||++.|..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999887766666789999999999877665 799887743
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-20 Score=215.50 Aligned_cols=443 Identities=17% Similarity=0.243 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHH---HHHHHHhHHHHHhcHHHHHHHHHHHH-HH
Q 000671 329 VVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGE---IVNYIAVDAYRMGEFPFWFHLTWSLA-LQ 404 (1361)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~riR~~l~~~Iy~K~L~ls~~~~~~~~~G~---ivNlms~D~~ri~~~~~~~~~~w~~p-lq 404 (1361)
+=.++.+..-.|...+++...|+-|+.-+|++=+.-...=+-....|. .=|-++.|+..+.+....+..-..-| +.
T Consensus 168 iPAtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lD 247 (728)
T KOG0064|consen 168 IPASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLD 247 (728)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 334555556667788999999999999999988753211000011122 23568889988877554443333334 56
Q ss_pred HHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHh
Q 000671 405 LFLAIGVLFGVV---GLGA--LPGLVLFLICGLLNVPFAKILQKCQSEF-------MIAQDERLRSTSEILNNMKIIKLQ 472 (1361)
Q Consensus 405 i~va~~~L~~~l---G~~~--l~gl~v~~l~~~l~~~~~~~~~~~q~~~-------m~~~D~R~~~~~E~L~~Ik~IK~~ 472 (1361)
++++.+-|.... |.+. ++|+++. +. ++.++.++-+. ...+..--.+=+.+++|-..|-+|
T Consensus 248 l~l~s~~L~~s~~s~g~~~~~~~~lvv~-----lT---a~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy 319 (728)
T KOG0064|consen 248 LILISFTLLDSATSVGAAGITLAGLVVY-----LT---AFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFY 319 (728)
T ss_pred HHHHHHHHHhhhccccccchhhhhhHHH-----HH---HHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhh
Confidence 666665555443 2221 2222221 11 22222222111 111112223556788888899999
Q ss_pred chHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHH--HHHHHHHHHHHHhC-CCCCC-----HHHHHH
Q 000671 473 SWEEKFKSLIESRREKEF---KWLSEAQL----RKAYGTVIYWMSPT--IISSVIFLGCALTG-SAPLN-----ASTIFT 537 (1361)
Q Consensus 473 ~wE~~f~~~i~~~R~~El---~~l~~~~~----~~~~~~~~~~~~p~--~v~~~~f~~~~l~~-~~~Lt-----~~~~Ft 537 (1361)
+-.+.-.+++++.=+.=. ..+.+... .-.+..=-.|.+.- ++++-.+......+ ..++. -...|+
T Consensus 320 ~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~ 399 (728)
T KOG0064|consen 320 GGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFI 399 (728)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHH
Confidence 887655555544332211 11111100 00000000111100 00000000000000 00111 112232
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCC-----C----chh---------hhcccc-----CCC
Q 000671 538 V-LATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD-HELN-----N----DDV---------RRISLQ-----KSD 592 (1361)
Q Consensus 538 ~-l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~-~e~~-----~----~~~---------~~~~~~-----~~~ 592 (1361)
+ =-+.-.....+..+-.....+.|-..--.|+.+.++- +|.. . +.. +..+.+ ...
T Consensus 400 t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~ 479 (728)
T KOG0064|consen 400 TNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNF 479 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcc
Confidence 2 2233333444555555555555555556676644321 1100 0 000 000000 012
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEc--CeEEEEecCCcCC
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--GSIAYVSQTSWIQ 670 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~--g~iayv~Q~~~i~ 670 (1361)
..|.++|+-.--|+. ..+...++|+|++|....|+||||||||||.+.|.|+.|...|..... .+|-|+||.|..-
T Consensus 480 ~gI~lenIpvItP~~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms 557 (728)
T KOG0064|consen 480 NGIILENIPVITPAG--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMS 557 (728)
T ss_pred cceEEecCceeccCc--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccC
Confidence 357888887766654 347899999999999999999999999999999999999999988775 3699999999988
Q ss_pred CCCHHHHhhcCC--------CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 000671 671 SGSIRDNILYGK--------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1361)
Q Consensus 671 ~~ti~eni~~g~--------~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ill 742 (1361)
-+|.||-|.+.. .+.++...+.++...|+.-++. ..|.+. +-+--..||||+|||+++||..|++|+.-+
T Consensus 558 ~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr-~~g~da-~~dWkd~LsgGekQR~~mARm~yHrPkyal 635 (728)
T KOG0064|consen 558 GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR-EGGWDA-VRDWKDVLSGGEKQRMGMARMFYHRPKYAL 635 (728)
T ss_pred cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHh-ccChhh-hccHHhhccchHHHHHHHHHHHhcCcchhh
Confidence 899999999863 3556677788888888755443 333221 223335699999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcC
Q 000671 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVD 786 (1361)
Q Consensus 743 LDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d 786 (1361)
|||.|||+-++++..||+.+. .-|-+.|-+||+++..+.-.
T Consensus 636 LDEcTsAvsidvE~~i~~~ak---~~gi~llsithrpslwk~h~ 676 (728)
T KOG0064|consen 636 LDECTSAVSIDVEGKIFQAAK---DAGISLLSITHRPSLWKYHT 676 (728)
T ss_pred hhhhhcccccchHHHHHHHHH---hcCceEEEeecCccHHHHHH
Confidence 999999999999999998653 24789999999998776433
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-24 Score=235.64 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=121.2
Q ss_pred cceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCc---------EEEEc----------CeEEEEecCCcCCCCCH
Q 000671 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG---------TVNLY----------GSIAYVSQTSWIQSGSI 674 (1361)
Q Consensus 614 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G---------~v~~~----------g~iayv~Q~~~i~~~ti 674 (1361)
+++++++++| +++|+||||||||||+++|.|.+++..| ++... .+|+|++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7789999999 9999999999999999999998866533 34332 2689999999877
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCc
Q 000671 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY----NDADIYLFDDPFSAV 750 (1361)
Q Consensus 675 ~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~----~~~~illLDep~sal 750 (1361)
|+.. ..++.+++++. .+ ....+..+||||||||++|||++. .+|++++||||+++|
T Consensus 89 -----~~~~-~~~~~~~~l~~----~~----------~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 89 -----YSII-SQGDVSEIIEA----PG----------KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred -----eeEE-ehhhHHHHHhC----CC----------ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 3221 23445555554 11 112567789999999999999986 567999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEe
Q 000671 751 DAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1361)
Q Consensus 751 D~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 792 (1361)
|+.....+.+.+.+ ..++.|+|++||+++.+..||+++.|.
T Consensus 149 D~~~~~~l~~~l~~-~~~~~tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 149 DDANVERFARLLKE-FSKETQFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred CHHHHHHHHHHHHH-hccCCEEEEEECCHHHHhhcceEEEEE
Confidence 99999998875544 345789999999999988899999985
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-20 Score=227.03 Aligned_cols=402 Identities=16% Similarity=0.144 Sum_probs=258.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccChh------HHHHHHhcCHHHHHhhhH
Q 000671 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVG------RILTRLSSDLSILDFDIP 1010 (1361)
Q Consensus 937 ~l~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~ap~~fFd~tp~G------rIlnRfs~Di~~id~~l~ 1010 (1361)
.+.+|..+..+..+....+.++......+....|=+.+.++-+.-- .||-....| ..=.|+..|+...-...-
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~ 166 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTL 166 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhHH
Confidence 3566777777777777777777777777777777777777777666 555444443 233678888876655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000671 1011 FSIVFVAASGTELLAIIGIMTF---------------VTWQVLVVAI----FAMVAVRFVQRYYIATARELIRINGTTKA 1071 (1361)
Q Consensus 1011 ~~l~~~~~~~~~~i~~i~v~~~---------------~~~~l~lv~i----p~~~~~~~~~~~y~~~sr~l~rl~~~~~s 1071 (1361)
.....++.++++++.-.+++.- +...+..+++ ...++..++.+...+-.-+-.+.|++-|.
T Consensus 167 ~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~ 246 (604)
T COG4178 167 DLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY 246 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence 4444455555554444433321 1111111111 11122234445555555555666666665
Q ss_pred hHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCccCH
Q 000671 1072 PVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAP 1150 (1361)
Q Consensus 1072 pl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~-~vl~~~g~is~ 1150 (1361)
-+. -.-+....|-.|+-|+...++..+..+.-.+.+......+.++...-...+-+.+++-.+. +-....|.++-
T Consensus 247 ~Lv----rv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~ 322 (604)
T COG4178 247 SLV----RVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITF 322 (604)
T ss_pred HHH----HHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChH
Confidence 432 2334556677888777666665555554444433333333333322222222222111111 22234789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc------CCCCCCCCCCCCCCCCCCCCcceEEEEEEEEE
Q 000671 1151 GLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH------IPPEPPAIVEDKRPPSSWPFKGRIELRQLKIR 1224 (1361)
Q Consensus 1151 g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRi~e~~~------~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs~~ 1224 (1361)
|.+..+.+-..++...+.|++..+..+..-.++..|+.++.+ .++|.+.... .+....-..+..|+|+|++.+
T Consensus 323 G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l~ 401 (604)
T COG4178 323 GGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSLR 401 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeEE
Confidence 999999998899999999999999999999999999999863 2222211100 000000001468999999999
Q ss_pred eCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCceecCcccccc
Q 000671 1225 YRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304 (1361)
Q Consensus 1225 Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~ 1304 (1361)
-+++. ..|++++|+|+|||.+-|.|+||||||||+++|.|+++-.+|+|.+-. -+++-++||.|++=.
T Consensus 402 ~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~ 469 (604)
T COG4178 402 TPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQ 469 (604)
T ss_pred CCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCC
Confidence 87665 589999999999999999999999999999999999999999988751 146789999999999
Q ss_pred cchhhhcC-CCCC--CCHHHHHHHHhhCcCCC-CCCcccccCCchhhhhhcccccccee
Q 000671 1305 GSVRTNLD-PLGL--YSDDEIWKVSQLTPNSR-NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1305 GTIR~NLd-P~~~--~sDeeI~~AL~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
||+||=|. |... ++|+|+.++|.+|+-+. -++++.... =.--+|.||||++.
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~---W~~vLS~GEqQRla 525 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR---WDRVLSGGEQQRLA 525 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc---HhhhcChhHHHHHH
Confidence 99999984 5443 89999999999997433 223322111 33468999999875
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-23 Score=243.61 Aligned_cols=200 Identities=23% Similarity=0.345 Sum_probs=168.2
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEc--CeEEEEecCC--
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--GSIAYVSQTS-- 667 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~--g~iayv~Q~~-- 667 (1361)
...|.++|++|.|+.++ -+++++||-|..++.+++|||||+||||||+++.|++.|..|.|.-. ..+++-.|+-
T Consensus 387 ~pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e 464 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAE 464 (614)
T ss_pred CCeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHh
Confidence 35789999999998764 68999999999999999999999999999999999999999999654 3577777763
Q ss_pred -cCCCCCHHHHhh--cCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 000671 668 -WIQSGSIRDNIL--YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1361)
Q Consensus 668 -~i~~~ti~eni~--~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLD 744 (1361)
.-...+.-|+++ |......+.++.++..|+|..|.+.. ...+||+|||.||..||..+..|.+++||
T Consensus 465 ~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~----------p~~~LS~Gqr~rVlFa~l~~kqP~lLlLD 534 (614)
T KOG0927|consen 465 QLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVV----------PMSQLSDGQRRRVLFARLAVKQPHLLLLD 534 (614)
T ss_pred hcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccccc----------chhhcccccchhHHHHHHHhcCCcEEEec
Confidence 335678888886 33335678899999999999877643 45689999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE-EecChHHHH
Q 000671 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1361)
Q Consensus 745 ep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1361)
|||++||..+...+-+ .++.. ..++|+||||..++.+ +++|.+.+||.+. ..|++....
T Consensus 535 EPtnhLDi~tid~lae-aiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 535 EPTNHLDIETIDALAE-AINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred CCCcCCCchhHHHHHH-HHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 9999999999887654 33332 3489999999999988 7999999998886 677776654
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=221.51 Aligned_cols=155 Identities=21% Similarity=0.295 Sum_probs=123.6
Q ss_pred ceeEEecCCeEEEEeCCCCCCHHHHHHHH----hCCccCCCcEEEE----------cCeEEEEecCC-c----C-CCCCH
Q 000671 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAI----LGEIPKISGTVNL----------YGSIAYVSQTS-W----I-QSGSI 674 (1361)
Q Consensus 615 ~i~l~i~~G~~~~ivG~~GsGKSTLl~~l----lg~~~~~~G~v~~----------~g~iayv~Q~~-~----i-~~~ti 674 (1361)
..++++.+| +++|+||||||||||+.+| .|..++.+|.+.. ...|++++|++ + + .+.|+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 345677788 9999999999999999999 4999988875531 12699999988 2 2 23499
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHH------HHHHHHHccCCCEEEEeCCCC
Q 000671 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR------IQLARAVYNDADIYLFDDPFS 748 (1361)
Q Consensus 675 ~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqR------v~lARal~~~~~illLDep~s 748 (1361)
.||+.++. +++.++.+ .+.+.+||+||||| ++||||+..+|++++||||++
T Consensus 94 ~~~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~ 150 (204)
T cd03240 94 LENVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTT 150 (204)
T ss_pred hhceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcc
Confidence 99998752 22222222 35677999999996 789999999999999999999
Q ss_pred CcCHHHHH-HHHHHHHHHhcC-CcEEEEEccCchHHhhcCeEEEEeC
Q 000671 749 AVDAHTAA-TLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEG 793 (1361)
Q Consensus 749 alD~~~~~-~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1361)
+||+...+ .+.+.+.....+ ++|+|++||+++.+..||+++.|++
T Consensus 151 ~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 151 NLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred ccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999999 887766544334 7899999999998888999999964
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-22 Score=223.33 Aligned_cols=180 Identities=17% Similarity=0.224 Sum_probs=126.2
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEec-CCeEEEEeCCCCCCHHHHHHHHhCCc-cCCCcEEEE------------cCe
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIK-WAQKIAVCGSVGAGKSSLLYAILGEI-PKISGTVNL------------YGS 659 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~-~G~~~~ivG~~GsGKSTLl~~llg~~-~~~~G~v~~------------~g~ 659 (1361)
.|+++|.. +|... ++++|+.. +|++++|+||||||||||+++|.+.+ .+..+.... ...
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEE
Confidence 46777766 55422 46677654 58999999999999999999999543 333333321 125
Q ss_pred EEEEecCCcCCCCCHHHHhhcCCCCCHHHHHHHH--HHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHcc-
Q 000671 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAI--KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN- 736 (1361)
Q Consensus 660 iayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~~~--~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~- 736 (1361)
|++++|++.......| +. ..+.+.+.+.+ +...+. +.+..++.+||||||||++||||++.
T Consensus 78 v~~~f~~~~~~~~~~r----~~-gl~~~~~~~~~~l~~g~l~-----------~~l~~~~~~lS~G~~~r~~la~al~~~ 141 (213)
T cd03279 78 VSFTFQLGGKKYRVER----SR-GLDYDQFTRIVLLPQGEFD-----------RFLARPVSTLSGGETFLASLSLALALS 141 (213)
T ss_pred EEEEEEECCeEEEEEE----ec-CCCHHHHHHhhhhhhcchH-----------HHhcCCccccCHHHHHHHHHHHHHHhH
Confidence 8889888743221111 11 23443333321 212222 23346778999999999999999984
Q ss_pred ---------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeE
Q 000671 737 ---------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1361)
Q Consensus 737 ---------~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1361)
+|++++|||||++||+...+.+.+.+.....+++|+|++||+++.+.. +|+++++++|..
T Consensus 142 p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 142 EVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 679999999999999999999876554443458899999999999876 699999999854
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-22 Score=223.87 Aligned_cols=135 Identities=47% Similarity=0.842 Sum_probs=120.3
Q ss_pred CCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHH
Q 000671 1210 WPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL 1289 (1361)
Q Consensus 1210 wp~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~L 1289 (1361)
||..|.++++|++++|.....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..++
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999996533359999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1290 RVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1290 R~~isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
|++++++||+|.+|++|+++|+..+..++++++.++++ ++ .+.-.+|.||||+|.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~-----------~~----~~~~~LS~G~~qrv~ 135 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-----------VS----EGGLNLSQGQRQLLC 135 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh-----------cc----CCCCcCCHHHHHHHH
Confidence 99999999999999999999998665567777777776 12 245578999999874
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-22 Score=226.79 Aligned_cols=176 Identities=22% Similarity=0.264 Sum_probs=115.4
Q ss_pred CcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCC----------------ccCCCcEEEEcCeEEEEecCCcCC----
Q 000671 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE----------------IPKISGTVNLYGSIAYVSQTSWIQ---- 670 (1361)
Q Consensus 611 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~----------------~~~~~G~v~~~g~iayv~Q~~~i~---- 670 (1361)
.++++++ |++++|+||||||||||+++|.+. ..+.+|.....+.|.+++|++.-+
T Consensus 16 ~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~ 90 (243)
T cd03272 16 TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPID 90 (243)
T ss_pred cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCC
Confidence 4667765 889999999999999999999843 333334211222344444443110
Q ss_pred --CCCHH-------HHhhcC-CCCCHHHHHHHHHHhcchHHHh--cCCCCCCc-------cccCCCCCCChHHHHHHHHH
Q 000671 671 --SGSIR-------DNILYG-KPMDKARYDKAIKACALDKDIN--NFDHGDLT-------EIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 671 --~~ti~-------eni~~g-~~~~~~~~~~~~~~~~l~~dl~--~l~~gd~t-------~ig~~g~~LSgGQkqRv~lA 731 (1361)
+.+++ +++.+. .....+.+...++.+++..+-. ..+.|..+ ..++++.+||||||||++||
T Consensus 91 ~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la 170 (243)
T cd03272 91 KEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALA 170 (243)
T ss_pred CCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHH
Confidence 11111 222221 1234445555555554432100 01222211 23467889999999999999
Q ss_pred HHHc----cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEe
Q 000671 732 RAVY----NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1361)
Q Consensus 732 Ral~----~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 792 (1361)
||++ .+|++++|||||++||+...+.+.+.+.+ ..+++|+|++||+.+....||++++|+
T Consensus 171 ~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~-~~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 171 LIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKE-LSDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred HHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHH-HhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 9996 36899999999999999999999876544 345788999999988777799999995
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-22 Score=234.07 Aligned_cols=182 Identities=27% Similarity=0.416 Sum_probs=149.1
Q ss_pred cccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------------EEEEecCC----cCCCCC
Q 000671 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------------IAYVSQTS----WIQSGS 673 (1361)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~--------------iayv~Q~~----~i~~~t 673 (1361)
.++|+||++.+||+++|.|-.|||+|-|+++|.|.-++.+|+|.++|+ |+|||.+- .+...+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 478999999999999999999999999999999999999999999984 99999873 467889
Q ss_pred HHHHhhcCC--------CCCHHHHHHHHHHhcchHHHhc-CCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 000671 674 IRDNILYGK--------PMDKARYDKAIKACALDKDINN-FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1361)
Q Consensus 674 i~eni~~g~--------~~~~~~~~~~~~~~~l~~dl~~-l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLD 744 (1361)
|++||.+.. ..+..+-++..+. ...+++. .+. ......+||||.+|+|.|||.|+.+|+++|||
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~--~~~~l~Ik~~s-----~~~~v~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAER--YIRRLRIKTPS-----PEQPIGTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHH--HHHhcCcccCC-----ccchhhcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 999997751 1222222222222 1122221 122 12456789999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHh-hcCeEEEEeCCeEEEec
Q 000671 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1361)
Q Consensus 745 ep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 800 (1361)
|||.|+|.-+..+||+.+.+...+|+++|++|.++.++- .||||+||++|+|+..=
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~ 483 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGEL 483 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEe
Confidence 999999999999999887777889999999999998865 59999999999998643
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=252.97 Aligned_cols=98 Identities=26% Similarity=0.494 Sum_probs=88.6
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEE
Q 000671 713 IGQRGLNLSGGQKQRIQLARAVYNDA---DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1361)
Q Consensus 713 ig~~g~~LSgGQkqRv~lARal~~~~---~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1361)
++.+..+||||||||+.|||++.++| ++|||||||++||++..+.+.+.+.+...+|+|+|++||+++.+..||+|+
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii 903 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWII 903 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE
Confidence 46788999999999999999999999 999999999999999999988765554456899999999999998899999
Q ss_pred EE------eCCeEEEecChHHHHhcCc
Q 000671 790 VL------EGGQITQSGNYQELLLAGT 810 (1361)
Q Consensus 790 ~l------~~G~i~~~g~~~~l~~~~~ 810 (1361)
+| ++|+|++.|+++++.+...
T Consensus 904 ~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 904 DLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred EecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 99 7999999999999986543
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-22 Score=223.67 Aligned_cols=172 Identities=20% Similarity=0.246 Sum_probs=127.4
Q ss_pred CeEEEEeCCCCCCHHHHHHHHhCCccCCC-cEEEEc----------------CeEEEEecCCc----------CCCCCHH
Q 000671 623 AQKIAVCGSVGAGKSSLLYAILGEIPKIS-GTVNLY----------------GSIAYVSQTSW----------IQSGSIR 675 (1361)
Q Consensus 623 G~~~~ivG~~GsGKSTLl~~llg~~~~~~-G~v~~~----------------g~iayv~Q~~~----------i~~~ti~ 675 (1361)
..+++|+||||||||||+++|.+.+.+.. |++... .+|++++|++- ....||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 45999999999999999999999987653 344332 16899999852 1246888
Q ss_pred HHhhcCCC---------CCHHHHHHHHHHhcchHH-Hh-cCCCCCC-------ccccCCCCCCChHHHHHHHHHHHHc--
Q 000671 676 DNILYGKP---------MDKARYDKAIKACALDKD-IN-NFDHGDL-------TEIGQRGLNLSGGQKQRIQLARAVY-- 735 (1361)
Q Consensus 676 eni~~g~~---------~~~~~~~~~~~~~~l~~d-l~-~l~~gd~-------t~ig~~g~~LSgGQkqRv~lARal~-- 735 (1361)
+||..+.. ...+++.+.++.+++..| .. ..+.|+- .....++.+||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88866432 123566677777776421 00 0111111 1234677899999999999999997
Q ss_pred --cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEe--CCe
Q 000671 736 --NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE--GGQ 795 (1361)
Q Consensus 736 --~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~--~G~ 795 (1361)
.+|+++++||||++||+...+++++.+.+ ..+|.|+|++||+.+.+..||+++-+. ||.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~-~~~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~ 247 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKT-HFKGSQFIVVSLKEGMFNNANVLFRTRFVDGT 247 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHH-HcCCCEEEEEECCHHHHHhCCEEEEEEeeCCE
Confidence 58899999999999999999999876544 356889999999988888899998774 553
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-22 Score=222.02 Aligned_cols=146 Identities=48% Similarity=0.799 Sum_probs=124.6
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcC
Q 000671 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1361)
Q Consensus 1214 G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1361)
|+|+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 57999999999975444699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCCC---CCcccccCCchhhhhhcccccccee
Q 000671 1294 SIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSRN---SRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1294 siIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++||+|.+|++|+++||+++...++++++++++..+-... ...++++.-....-++|.||||+|.
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~ 149 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLC 149 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHH
Confidence 99999999999999999998777778888888887642210 0123344333456689999999975
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-22 Score=218.80 Aligned_cols=137 Identities=26% Similarity=0.378 Sum_probs=112.7
Q ss_pred EEEEEEEEEeCCC---CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCC---hHHH
Q 000671 1216 IELRQLKIRYRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDL 1289 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~---~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~---l~~L 1289 (1361)
|+|+||+..|... ...+|+||||+|++||..||+|+||||||||++++-|+-+|++|+|.+||.||..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999752 356999999999999999999999999999999999999999999999998888776 6677
Q ss_pred hhcCceecCcccccc-cchhhhcC-CCC--CCCHHH----HHHHHhhCcCCCCCCcccccCCchhhhhhccccccceec
Q 000671 1290 RVKLSIIPQEPTLFR-GSVRTNLD-PLG--LYSDDE----IWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVTV 1360 (1361)
Q Consensus 1290 R~~isiIpQdp~LF~-GTIR~NLd-P~~--~~sDee----I~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1361)
|++|++|+|++-|++ -|+.+|+. |.. ..+.+| +.+.|+.++-. -.-..--.++|.||||+|..
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~--------dk~~~yP~qLSGGQKQRVaI 152 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS--------DKADRYPAQLSGGQKQRVAI 152 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh--------hhhccCchhcCcchhhHHHH
Confidence 899999999999998 69999996 543 244444 44566666433 22233446899999999963
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-22 Score=226.55 Aligned_cols=148 Identities=38% Similarity=0.600 Sum_probs=125.7
Q ss_pred CcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhh
Q 000671 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291 (1361)
Q Consensus 1212 ~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~ 1291 (1361)
..|.|+++|++++|......+|+|+||+|+|||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+..++|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46899999999999654346999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCC--CCCc-ccccCCchhhhhhcccccccee
Q 000671 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSR--NSRI-DIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1292 ~isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++++||+|.+|++|+++|+++.....+++++++++..+-.. +... ++|......+.++|.||||+|.
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~ 166 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFC 166 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHH
Confidence 999999999999999999998765455677888877653221 1111 4555556677899999999874
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-22 Score=203.84 Aligned_cols=185 Identities=25% Similarity=0.389 Sum_probs=150.5
Q ss_pred cccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------EEEEecCC-cCCCCCHHHH
Q 000671 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------IAYVSQTS-WIQSGSIRDN 677 (1361)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~-------------iayv~Q~~-~i~~~ti~en 677 (1361)
-|-.+|.++..||+.-+||||||||||||..+.|+.+ -+|+|.+.|. -||.+|+. -.|.+-|...
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 4777899999999999999999999999999999875 6899999983 68998874 4567788888
Q ss_pred hhcCCCCC--HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHcc-------CCCEEEEeCCCC
Q 000671 678 ILYGKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN-------DADIYLFDDPFS 748 (1361)
Q Consensus 678 i~~g~~~~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~-------~~~illLDep~s 748 (1361)
+....|.. ....+++.+..++++. +|+....||||+-|||-||-.+++ ..+++++|||-+
T Consensus 93 L~L~qP~~~~a~~i~~i~~~L~l~DK-----------L~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~ 161 (248)
T COG4138 93 LTLHQPDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMN 161 (248)
T ss_pred hhhcCchHHHHHHHHHHHhhhcccch-----------hhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCc
Confidence 88876642 1233444444444333 346678899999999999988875 346999999999
Q ss_pred CcCHHHHHHHHHHHHHHhcCCcEEEEEccCch-HHhhcCeEEEEeCCeEEEecChHHHHhc
Q 000671 749 AVDAHTAATLFNECVMAALEKKTVILVTHQVE-FLSEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 749 alD~~~~~~i~~~~~~~~~~~~tvilvtH~~~-~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1361)
+||...+..+...+.....+|.|||+..||++ .+++||++..++.|++..+|..+|.+..
T Consensus 162 ~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 162 SLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred chhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 99999888776555455668999999999997 5899999999999999999999998754
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-22 Score=222.81 Aligned_cols=174 Identities=21% Similarity=0.210 Sum_probs=126.9
Q ss_pred EEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEc--------C------------eEEEEecCCc--CCCCCHH
Q 000671 618 LDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--------G------------SIAYVSQTSW--IQSGSIR 675 (1361)
Q Consensus 618 l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~--------g------------~iayv~Q~~~--i~~~ti~ 675 (1361)
+...++ +++|+||||||||||+.+|.+.+.+..|++... | .+.|..|++- +...+++
T Consensus 18 ~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~ 96 (247)
T cd03275 18 IGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIIT 96 (247)
T ss_pred ecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEE
Confidence 333444 999999999999999999998887666655321 1 2334444421 1222333
Q ss_pred HHhh----cCCCCCHHHHHHHHHHhcchHHHhc--CCCCCCccccCC---------CCCCChHHHHHHHHHHHHcc----
Q 000671 676 DNIL----YGKPMDKARYDKAIKACALDKDINN--FDHGDLTEIGQR---------GLNLSGGQKQRIQLARAVYN---- 736 (1361)
Q Consensus 676 eni~----~g~~~~~~~~~~~~~~~~l~~dl~~--l~~gd~t~ig~~---------g~~LSgGQkqRv~lARal~~---- 736 (1361)
+.-. -|.+.+.+.|++.++.+++..+... .+.|+-+.+.+. ..+||||||||++||||++.
T Consensus 97 ~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~ 176 (247)
T cd03275 97 GGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQ 176 (247)
T ss_pred CCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccC
Confidence 3211 1345677889999999998755332 345655555332 37899999999999999976
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEe
Q 000671 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1361)
Q Consensus 737 ~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 792 (1361)
+|++++|||||++||+.....+.+.+.....+|.|+|++||+.+.+..||++++|.
T Consensus 177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 177 PAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 49999999999999999999988765554445889999999999888899999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-21 Score=212.23 Aligned_cols=200 Identities=23% Similarity=0.356 Sum_probs=136.6
Q ss_pred cEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcCCCCC
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGS 673 (1361)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i~~~t 673 (1361)
.|.++|-+.+-.. ...+.|.|+.|-.|..+++|||||-||||||+-|..---..-- +-.+-||-|+..--+.|
T Consensus 264 DIKiEnF~ISA~G---k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp----nIDvLlCEQEvvad~t~ 336 (807)
T KOG0066|consen 264 DIKIENFDISAQG---KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP----NIDVLLCEQEVVADSTS 336 (807)
T ss_pred cceeeeeeeeccc---ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC----CCceEeeeeeeeecCcH
Confidence 5777777766543 3578999999999999999999999999999999753211111 11367888876555555
Q ss_pred HHHHhhcC---------------------CCCCHHHHHHHHHH---hc-------chHHHhcCCCCCCccccCCC-CCCC
Q 000671 674 IRDNILYG---------------------KPMDKARYDKAIKA---CA-------LDKDINNFDHGDLTEIGQRG-LNLS 721 (1361)
Q Consensus 674 i~eni~~g---------------------~~~~~~~~~~~~~~---~~-------l~~dl~~l~~gd~t~ig~~g-~~LS 721 (1361)
.-+.|+-. .....++.+++.+. .+ ...-+.. .|-..+.-+++ ..+|
T Consensus 337 Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAG--LGFskEMQ~rPt~kFS 414 (807)
T KOG0066|consen 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAG--LGFSKEMQERPTTKFS 414 (807)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhh--cCCChhHhcCCccccC
Confidence 44444321 11112333333221 11 0111222 22233333444 5799
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEE-Ee
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QS 799 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~ 799 (1361)
||-|.||+||||||..|-++.|||||++||.....++ ++.+.++ .||.++|+||..++.. |..|+.+++-++. +.
T Consensus 415 GGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWL-dNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYr 491 (807)
T KOG0066|consen 415 GGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWL-DNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYR 491 (807)
T ss_pred CceeeehhHHHHHhcCceeeeecCCccccccceeeeh-hhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhhhc
Confidence 9999999999999999999999999999999988775 3444444 4799999999999987 7889999887774 45
Q ss_pred cChHHH
Q 000671 800 GNYQEL 805 (1361)
Q Consensus 800 g~~~~l 805 (1361)
|+|.-+
T Consensus 492 GNY~~F 497 (807)
T KOG0066|consen 492 GNYTLF 497 (807)
T ss_pred chHHHH
Confidence 665443
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-22 Score=249.98 Aligned_cols=202 Identities=23% Similarity=0.324 Sum_probs=165.8
Q ss_pred EEEeeEEEeCC-CCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCcc--CCCcEEEEcC----------eEEE
Q 000671 596 KIQEGNFSWDP-ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--KISGTVNLYG----------SIAY 662 (1361)
Q Consensus 596 ~~~~~~f~~~~-~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~--~~~G~v~~~g----------~iay 662 (1361)
..+|..+.-+. +..+.+|+||+=-++||.++|++|+|||||||||+.|+|-.. ..+|+|.++| .+||
T Consensus 789 ~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GY 868 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGY 868 (1391)
T ss_pred EEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccce
Confidence 33444444321 234568999999999999999999999999999999999643 4578888988 4999
Q ss_pred EecCC-cCCCCCHHHHhhcCC------CCC-H---HHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHH
Q 000671 663 VSQTS-WIQSGSIRDNILYGK------PMD-K---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1361)
Q Consensus 663 v~Q~~-~i~~~ti~eni~~g~------~~~-~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1361)
|.|+. .+...||||-+.|.. +.+ + +..++|++-.+|++--+ ..||..|..||.+||+|+.||
T Consensus 869 vqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~d-------aiVG~~G~GLs~eQRKrLTIg 941 (1391)
T KOG0065|consen 869 VEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYAD-------ALVGLPGSGLSTEQRKRLTIG 941 (1391)
T ss_pred eecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhh-------hhccCCCCCCCHHHhceeeEE
Confidence 99986 567889999998852 222 2 34577888777764332 458999999999999999999
Q ss_pred HHHccCC-CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchH--HhhcCeEEEEe-CCeEEEecChHH
Q 000671 732 RAVYNDA-DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF--LSEVDRILVLE-GGQITQSGNYQE 804 (1361)
Q Consensus 732 Ral~~~~-~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~--l~~~d~i~~l~-~G~i~~~g~~~~ 804 (1361)
--|..|| .|++|||||||||+.++..|.+.+.+....|+||+.+-|+++. .+..|+++.|+ +|+.++.|+..+
T Consensus 942 VELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 942 VELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999 8999999999999999999998877777899999999999974 56789999995 689999998655
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-22 Score=210.60 Aligned_cols=137 Identities=28% Similarity=0.352 Sum_probs=112.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
|+|+|||++|.+ ..+++|+||+|++||.+.++|||||||||+++++.|++||++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999973 359999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccccccc-chhhhcC--CC-CCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhccccccceec
Q 000671 1296 IPQEPTLFRG-SVRTNLD--PL-GLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVTV 1360 (1361)
Q Consensus 1296 IpQdp~LF~G-TIR~NLd--P~-~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1361)
|-|..-||.- ||.+||. |- ...+ ++.+.+-|++++-.-+... -----.+|.||+|+|-|
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~------~RyP~eLSGGQQQRVGv 146 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYA------DRYPHELSGGQQQRVGV 146 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHh------hcCchhcCcchhhHHHH
Confidence 9999999987 9999995 32 1234 3445555665532211111 11123589999999965
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=205.03 Aligned_cols=136 Identities=29% Similarity=0.375 Sum_probs=108.4
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCC-CCChHHHhhcC
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC-SMGLKDLRVKL 1293 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~-~i~l~~LR~~i 1293 (1361)
-|+++||+.+|... .||||||++|++||.|.|+||||||||||+++|.++-+|++|+|.|||.++. +.++..+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999743 4999999999999999999999999999999999999999999999998874 34899999999
Q ss_pred ceecCccccccc-chhhhcC--CC---CCCCHHHHHHH---HhhCcCCCCCCcccccCCchhhhhhccccccceec
Q 000671 1294 SIIPQEPTLFRG-SVRTNLD--PL---GLYSDDEIWKV---SQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVTV 1360 (1361)
Q Consensus 1294 siIpQdp~LF~G-TIR~NLd--P~---~~~sDeeI~~A---L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1361)
|+|+|..-||.- |+-+|+. |- +...+|.-..| |++++-.. .--..-..+|.||||+|..
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~--------ka~~yP~qLSGGQqQRVAI 147 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD--------KADAYPAQLSGGQQQRVAI 147 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchh--------hhhhCccccCcHHHHHHHH
Confidence 999999999987 9999984 31 22233333344 44443222 1122234689999999853
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.8e-21 Score=244.04 Aligned_cols=93 Identities=29% Similarity=0.532 Sum_probs=84.5
Q ss_pred ccCCCCCCChHHHHHHHHHHHHcc---CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEE
Q 000671 713 IGQRGLNLSGGQKQRIQLARAVYN---DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1361)
Q Consensus 713 ig~~g~~LSgGQkqRv~lARal~~---~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1361)
++++..+||||||||+.|||++.. +|++|+|||||++||+...+.+.+.+.....+|+|+|++||+++.+..||+|+
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii 901 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYII 901 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 467889999999999999999997 59999999999999999999998776555556899999999999998899999
Q ss_pred EE------eCCeEEEecChHHH
Q 000671 790 VL------EGGQITQSGNYQEL 805 (1361)
Q Consensus 790 ~l------~~G~i~~~g~~~~l 805 (1361)
+| ++|+|++.|+++++
T Consensus 902 ~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 902 DLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EecCCccCCCCEEEEeCCHHHh
Confidence 99 79999999998875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-21 Score=204.54 Aligned_cols=136 Identities=29% Similarity=0.441 Sum_probs=115.8
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCC---hHHHhh
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDLRV 1291 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~---l~~LR~ 1291 (1361)
.|+++||+.+|+. ...+|+||||+|++||.|||+|+||||||||+++|-|+.+|++|+|.++|.+|.++. ++++|.
T Consensus 3 ~i~~~nl~k~yp~-~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPG-GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCC-CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 5899999999964 456999999999999999999999999999999999999999999999999999998 788899
Q ss_pred cCceecCccccccc-chhhhcC------------CCCCCCHHH---HHHHHhhCcCCCCCCcccccCCchhhhhhccccc
Q 000671 1292 KLSIIPQEPTLFRG-SVRTNLD------------PLGLYSDDE---IWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTK 1355 (1361)
Q Consensus 1292 ~isiIpQdp~LF~G-TIR~NLd------------P~~~~sDee---I~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1355 (1361)
++|+|.|+|-|-.. |+-+|+- -|+-++.+| ..+||+++ |+-...+-.--.+|.||+
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLerv--------gi~~~A~qra~~LSGGQQ 153 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV--------GILDKAYQRASTLSGGQQ 153 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc--------CcHHHHHHHhccCCcchh
Confidence 99999999999876 8999973 134566555 45566655 344455666678999999
Q ss_pred ccee
Q 000671 1356 QLVT 1359 (1361)
Q Consensus 1356 ~~~~ 1359 (1361)
|+|.
T Consensus 154 QRVa 157 (258)
T COG3638 154 QRVA 157 (258)
T ss_pred HHHH
Confidence 9985
|
|
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-18 Score=193.42 Aligned_cols=259 Identities=15% Similarity=0.255 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcC---CCCc--hhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000671 909 QSGFVGLQAAATYWLAYAIQI---PKIT--SGILI--GVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKA 981 (1361)
Q Consensus 909 ~~~~~~~~~~~~~wl~~~~~~---~~~~--~~~~l--~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~il~a 981 (1361)
.++..+.....+++++.+.+. .+.. ...+. ..++++.++...+.....+...+.+.+..+++++++++++++.
T Consensus 8 ~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 87 (275)
T PF00664_consen 8 SILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRL 87 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444455566666665542 1111 11111 1222333344444555555677889999999999999999999
Q ss_pred CCccccccChhHHHHHHhcCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 982 PMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARE 1061 (1361)
Q Consensus 982 p~~fFd~tp~GrIlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~lv~ip~~~~~~~~~~~y~~~sr~ 1061 (1361)
|.+||+++++|+++||+++|++.+++.+...+..++..+..+++.+++++..+|+++++.+...+++.++..++.+..++
T Consensus 88 ~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~ 167 (275)
T PF00664_consen 88 PYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIFSKKIRK 167 (275)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998888888999999999999
Q ss_pred HHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Q 000671 1062 LIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-L 1140 (1361)
Q Consensus 1062 l~rl~~~~~spl~s~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~l~~l~~~~~~~~-~ 1140 (1361)
..+...+..++..+++.|.++|+++||+|+.|+++.+++.+..++..+........+.|.....+++..+..+.+..+ +
T Consensus 168 ~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 247 (275)
T PF00664_consen 168 LSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVLILIFGA 247 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998899999888888877754444433 4
Q ss_pred hh-hcCCccCHHHHHHHHHHHHHHHHHH
Q 000671 1141 VL-IPRGYVAPGLVGLSLSYAFTLTGTQ 1167 (1361)
Q Consensus 1141 vl-~~~g~is~g~~gl~l~ya~~l~~~l 1167 (1361)
.+ ...|.+++|.+..+++|...+.+|+
T Consensus 248 ~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 248 YLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 55 6789999999999999998888774
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-21 Score=197.13 Aligned_cols=135 Identities=22% Similarity=0.313 Sum_probs=113.4
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChH---HHhhc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRVK 1292 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~---~LR~~ 1292 (1361)
|+|+||+.+|..+ +++|+||||+|++||.+=++|+|||||||++++|+|...|++|+|.++|.|++++.-+ -||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999876 6799999999999999999999999999999999999999999999999999998755 57999
Q ss_pred CceecCccccccc-chhhhcC-CCC--CCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1293 LSIIPQEPTLFRG-SVRTNLD-PLG--LYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1293 isiIpQdp~LF~G-TIR~NLd-P~~--~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
||+|.||--|... |+.||+. |.. ..+ .+++-++|+.++-.-..+--+ -.+|.|++|+|.
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP--------~~LSGGEQQRva 147 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP--------SQLSGGEQQRVA 147 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc--------cccCchHHHHHH
Confidence 9999999988766 9999996 432 123 345678999987554443322 247788999885
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-20 Score=208.86 Aligned_cols=199 Identities=22% Similarity=0.394 Sum_probs=154.1
Q ss_pred CcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCCc--
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-- 668 (1361)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~~-- 668 (1361)
..+-+.|++|.|+.. .|.+++++|-|.--..+|||||||.||||||++|+|.++|.+|+..-+- +||+..|+..
T Consensus 585 PvLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~ 662 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEA 662 (807)
T ss_pred CeeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHh
Confidence 456788999999864 5899999999999999999999999999999999999999999986554 6999999753
Q ss_pred C-CCCCHHHHhhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 000671 669 I-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF 747 (1361)
Q Consensus 669 i-~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~ 747 (1361)
+ ...|--|.+.-+-..+.+..++.+-..+|..-.. | -+...||||||.||+||--.++.|||+||||||
T Consensus 663 L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAH-------T---ikikdLSGGQKaRValaeLal~~PDvlILDEPT 732 (807)
T KOG0066|consen 663 LNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAH-------T---IKIKDLSGGQKARVALAELALGGPDVLILDEPT 732 (807)
T ss_pred hccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccc-------e---EeeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence 2 3447777775443444444556666666653322 2 245689999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcC-eEEEEeCCeEEE-ecChHHHH
Q 000671 748 SAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVD-RILVLEGGQITQ-SGNYQELL 806 (1361)
Q Consensus 748 salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d-~i~~l~~G~i~~-~g~~~~l~ 806 (1361)
++||..+...+-+. ++.. +..||+||||-..+...| ..+|+++-.|-+ .|++++..
T Consensus 733 NNLDIESIDALaEA-Iney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYk 790 (807)
T KOG0066|consen 733 NNLDIESIDALAEA-INEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYK 790 (807)
T ss_pred CCcchhhHHHHHHH-HHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHHHH
Confidence 99999998876543 3332 347999999999887653 567777766643 45655543
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-20 Score=214.48 Aligned_cols=197 Identities=24% Similarity=0.399 Sum_probs=160.8
Q ss_pred CCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEecCC--
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-- 667 (1361)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g--~iayv~Q~~-- 667 (1361)
...+++.+++|.|++++. +.+.++++++..-+..+++|+||+||||+++++.|+..|..|.+.+.+ +|+|-.|..
T Consensus 360 ~p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd 438 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVD 438 (582)
T ss_pred CCeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhh
Confidence 356899999999987643 799999999999999999999999999999999999999999998877 699999974
Q ss_pred cCC-CCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 000671 668 WIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1361)
Q Consensus 668 ~i~-~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1361)
|+. +.+.-|-..-..| ..++.|++.+...+|..++..- ....||||||-||++|.+...+|.+|+|||
T Consensus 439 ~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~----------si~~LSGGQKsrvafA~~~~~~PhlLVLDE 508 (582)
T KOG0062|consen 439 FLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQ----------SIASLSGGQKSRVAFAACTWNNPHLLVLDE 508 (582)
T ss_pred HHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhc----------cccccCCcchhHHHHHHHhcCCCcEEEecC
Confidence 321 2222232221111 2678999999999999888742 246799999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhh-cCeEEEEeCCeEEE-ecCh
Q 000671 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ-SGNY 802 (1361)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~-~g~~ 802 (1361)
||+.||..+-..+-+.+ +. . +-.||+||||.++++. |+.+++.+||++.. .|..
T Consensus 509 PTNhLD~dsl~AL~~Al-~~-F-~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 509 PTNHLDRDSLGALAKAL-KN-F-NGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred CCccccHHHHHHHHHHH-Hh-c-CCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccH
Confidence 99999999987764432 21 2 3479999999999987 89999999999974 4443
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-21 Score=213.09 Aligned_cols=181 Identities=15% Similarity=0.124 Sum_probs=122.6
Q ss_pred EEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCCcCC-CCC
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ-SGS 673 (1361)
Q Consensus 595 i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~~i~-~~t 673 (1361)
++++|.- +|. ...+++++++ ++++|+|||||||||++++|.-.+-...... ..++++|++|+.... +.|
T Consensus 6 l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~-~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 6 LVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM-RQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred EEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh-hhhhHHHHhcCCCCCCCCc
Confidence 4555543 443 2357888887 7999999999999999999972111100011 124689999987653 457
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHh-------------cchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHcc----
Q 000671 674 IRDNILYGKPMDKARYDKAIKAC-------------ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN---- 736 (1361)
Q Consensus 674 i~eni~~g~~~~~~~~~~~~~~~-------------~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~---- 736 (1361)
++++..+-...... ..++.. +-..++..++++.+ .+...||+|||||++||||++.
T Consensus 76 ~~~~~~~~~~~~~~---~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~----~~~~~lS~G~~~r~~la~al~~~~~~ 148 (212)
T cd03274 76 SCSVEVHFQEIIDK---PLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSW----KNISNLSGGEKTLSSLALVFALHHYK 148 (212)
T ss_pred eEEEEEEEEeCCCH---HHHHHCCcCCCCCceEEcCCcEEEeeccccccc----cchhhcCHHHHHHHHHHHHHHhcccC
Confidence 77776654322100 011000 00012223344333 3456899999999999999974
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEEEeC
Q 000671 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1361)
Q Consensus 737 ~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1361)
+|++++|||||++||++..+.+.+.+.. ..++.|+|++||+.+....||++++|..
T Consensus 149 ~p~ililDEPt~gLD~~~~~~l~~~l~~-~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSIVANYIKE-RTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHH-HcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 5899999999999999999998765544 4567899999999877778999999953
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-20 Score=206.06 Aligned_cols=137 Identities=31% Similarity=0.464 Sum_probs=117.5
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCC-CCChHHHhhcC
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC-SMGLKDLRVKL 1293 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~-~i~l~~LR~~i 1293 (1361)
.|+++|++|+|.++ .++|+|+||+|++||.++|+|+||||||||+++|.|++.|++|.|.+||.|++ +.+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58999999999877 67999999999999999999999999999999999999999999999999999 59999999999
Q ss_pred ceecCcc--cccccchhhhcC--CCC-CCCHHH----HHHHHhhCcCCCCCCcccccCCchhhhhhccccccceec
Q 000671 1294 SIIPQEP--TLFRGSVRTNLD--PLG-LYSDDE----IWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVTV 1360 (1361)
Q Consensus 1294 siIpQdp--~LF~GTIR~NLd--P~~-~~sDee----I~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1361)
++|.|+| .+|..||.+.+. |.+ ..+.+| +.+||+.++-..- .|-+++ ++|.||||+|.+
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~----~~r~p~----~LSGGqkqRvaI 149 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEEL----LDRPPF----NLSGGQKQRVAI 149 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhh----ccCCcc----ccCCcceeeHHh
Confidence 9999999 899999999996 222 244444 6677777754432 455554 689999999864
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-20 Score=207.47 Aligned_cols=135 Identities=29% Similarity=0.426 Sum_probs=109.9
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCc
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
.++.+|++|+|. ..++|+|+||+|++||.++|+||+|||||||+++|.|+..|.+|+|++||.||.+++.+++-++++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 478999999997 345999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcccc-cccchhhhcC----C----CCCCC--HH-HHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1295 IIPQEPTL-FRGSVRTNLD----P----LGLYS--DD-EIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1295 iIpQdp~L-F~GTIR~NLd----P----~~~~s--De-eI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+|||++.. |.=|++|=+- | |...+ |+ .+.+||+.++-. ..-....-.+|.||||+|-
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~--------~la~r~~~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE--------HLADRPVDELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH--------HHhcCcccccChhHHHHHH
Confidence 99999754 5558888662 3 22223 33 477788887422 1222223467889999984
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-20 Score=210.51 Aligned_cols=144 Identities=27% Similarity=0.428 Sum_probs=115.0
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
|+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.|+...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57999999996544569999999999999999999999999999999999999999999999999999888899999999
Q ss_pred ecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1296 IPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1296 IpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+||+|.+|+.|+++||.... ..+.+++.++++..+-.. .-..+++..--.+.-++|.||||+|.
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~ 148 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIA 148 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHH
Confidence 99999999999999997432 245566666665442110 00112222222344579999999985
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-20 Score=199.79 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=114.7
Q ss_pred cccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCC-----cE----EEE----cCeEEEEecCCcCCCCCHHHHh
Q 000671 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS-----GT----VNL----YGSIAYVSQTSWIQSGSIRDNI 678 (1361)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~-----G~----v~~----~g~iayv~Q~~~i~~~ti~eni 678 (1361)
.++++++++.+| +++|+||||||||||+.+|...+.... |. +.- .+.|.+.+|+.-+.. |-
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~~ 84 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----NP 84 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----Cc
Confidence 356788888887 889999999999999999874322111 21 000 124777777654333 20
Q ss_pred hcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCcCHHH
Q 000671 679 LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDAHT 754 (1361)
Q Consensus 679 ~~g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal----~~~~~illLDep~salD~~~ 754 (1361)
......++.+++++. .+ ...++..+||||||||++||||+ +.+|++++||||+++||+..
T Consensus 85 --~~~~~~~~~~~~l~~------------~~--~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~ 148 (198)
T cd03276 85 --LCVLSQDMARSFLTS------------NK--AAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN 148 (198)
T ss_pred --CCHHHHHHHHHHhcc------------cc--ccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH
Confidence 000112333333332 11 12367789999999999999999 69999999999999999999
Q ss_pred HHHHHHHHHHHhcC---CcEEEEEccCchHHhhcCeEEEEeCCe
Q 000671 755 AATLFNECVMAALE---KKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1361)
Q Consensus 755 ~~~i~~~~~~~~~~---~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1361)
...+.+.+.+...+ ++|+|++||+++.+...|+|-+|..|+
T Consensus 149 ~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 149 RKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99988766554332 358999999999998899999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-20 Score=199.29 Aligned_cols=96 Identities=30% Similarity=0.644 Sum_probs=91.0
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
|+++|++++|+.+..++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+++.+.+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57999999996543459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccccccchhhhc
Q 000671 1296 IPQEPTLFRGSVRTNL 1311 (1361)
Q Consensus 1296 IpQdp~LF~GTIR~NL 1311 (1361)
+||+|.+|++|+++|+
T Consensus 81 ~~q~~~~~~~tv~~~l 96 (173)
T cd03246 81 LPQDDELFSGSIAENI 96 (173)
T ss_pred ECCCCccccCcHHHHC
Confidence 9999999999999998
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.1e-20 Score=207.20 Aligned_cols=181 Identities=22% Similarity=0.340 Sum_probs=139.5
Q ss_pred eeEEEeCCCCCCCcccceeEEecC-----CeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEecCC-cCCCC
Q 000671 599 EGNFSWDPELAIPTLRGVNLDIKW-----AQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS-WIQSG 672 (1361)
Q Consensus 599 ~~~f~~~~~~~~~~L~~i~l~i~~-----G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~iayv~Q~~-~i~~~ 672 (1361)
+.-++|+.- ...+.+..|++.+ ||+++++||||-||||+.+.|+|.++|++|. ..+-+|+|=||-- --+++
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~~vSyKPQyI~~~~~g 416 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDLKVSYKPQYISPDYDG 416 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-CccceEeecceeecCCCCC
Confidence 444566542 2356677776655 6789999999999999999999999999998 5555899999973 34899
Q ss_pred CHHHHhhcCCC--CCHHHH-HHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000671 673 SIRDNILYGKP--MDKARY-DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1361)
Q Consensus 673 ti~eni~~g~~--~~~~~~-~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~sa 749 (1361)
||++-+.-..+ +...+| .++++-..|++-++ .+..+||||+.|||++|.||.+++|+||||||.+.
T Consensus 417 tV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e-----------~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~ 485 (591)
T COG1245 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLE-----------RPVDELSGGELQRVAIAAALSREADLYLLDEPSAY 485 (591)
T ss_pred cHHHHHHHhhhhhcccchhHHhhcCccchHHHHh-----------cccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence 99998754322 333343 35556666665554 45678999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhh-cCeEEEEeC
Q 000671 750 VDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEG 793 (1361)
Q Consensus 750 lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~ 793 (1361)
||.+.+-.+-+.+.+-. ..++|.++|-||+-.+.. +||++|.+.
T Consensus 486 LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 486 LDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred ccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99987765443332322 357899999999999987 699999863
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-20 Score=208.68 Aligned_cols=148 Identities=29% Similarity=0.393 Sum_probs=115.3
Q ss_pred CcceEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHh
Q 000671 1212 FKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290 (1361)
Q Consensus 1212 ~~G~I~f~nVs~~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR 1290 (1361)
..|.++++|++++|+.. ..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45789999999999642 23599999999999999999999999999999999999999999999999999988888889
Q ss_pred hcCceecCcccccccchhhhcCC-CCCCCHHHHHHHHhhCcCC-CCCCc--ccccCCchhhhhhcccccccee
Q 000671 1291 VKLSIIPQEPTLFRGSVRTNLDP-LGLYSDDEIWKVSQLTPNS-RNSRI--DIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1291 ~~isiIpQdp~LF~GTIR~NLdP-~~~~sDeeI~~AL~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++++++||+|.+|++|+++|++. ....+.+++++..+...-. .-... +++..--.....+|.||||+|.
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~ 160 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVA 160 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHH
Confidence 99999999999999999999973 2223344444433222100 00001 2333334446789999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-20 Score=207.04 Aligned_cols=136 Identities=19% Similarity=0.288 Sum_probs=109.9
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChH---HHhhc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRVK 1292 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~---~LR~~ 1292 (1361)
|+++|++++|+.+..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964433599999999999999999999999999999999999999999999999999877644 47889
Q ss_pred CceecCccccccc-chhhhcCCC----CC---CCHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1293 LSIIPQEPTLFRG-SVRTNLDPL----GL---YSDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1293 isiIpQdp~LF~G-TIR~NLdP~----~~---~sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++++||+|.+|.. |+++|+... +. ..++++.++++..+-. .. .|..+ -.+|.||||+|.
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~~~~----~~LSgG~~qrv~ 148 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE--GK--AHALP----MQLSGGEQQRVA 148 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hh--hhCCh----hhCCHHHHHHHH
Confidence 9999999999875 999999621 11 1245678888887532 11 12222 379999999975
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-20 Score=212.53 Aligned_cols=134 Identities=25% Similarity=0.371 Sum_probs=110.0
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCc
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
.|+++||+.+|.+.. ||+|+|++|+.||.+++||||||||||+++++.|+.+|++|+|.|||.|++++++++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 699999999997533 999999999999999999999999999999999999999999999999999999987 8999
Q ss_pred eecCccccccc-chhhhcC-CCC--CCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhccccccceec
Q 000671 1295 IIPQEPTLFRG-SVRTNLD-PLG--LYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVTV 1360 (1361)
Q Consensus 1295 iIpQdp~LF~G-TIR~NLd-P~~--~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1361)
+|+|+.-||.. ||++||. |.. ..+ |+++.++++..+ | +-.--.+--.+|.||||+|.+
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~------l--~~lL~r~P~~LSGGQrQRVAl 144 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLG------L--EHLLNRKPLQLSGGQRQRVAL 144 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcC------C--hhHHhcCcccCChhhHHHHHH
Confidence 99999999998 9999996 221 122 445556666552 1 111111234689999999863
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-20 Score=208.91 Aligned_cols=145 Identities=30% Similarity=0.456 Sum_probs=116.0
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcC
Q 000671 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1361)
Q Consensus 1214 G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1361)
|+|+++|++++|..+ .++|+|+||+|++||.+||+|++|||||||+++|.|+.+|.+|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 579999999999633 3499999999999999999999999999999999999999999999999999998888999999
Q ss_pred ceecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC-CCCc--ccccCCchhhhhhcccccccee
Q 000671 1294 SIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR-NSRI--DIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1294 siIpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++||+|.+|++|+++|+..+. ...++++.++++..+-.. -... +++..-....-.+|.||||+|.
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~ 149 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLA 149 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHH
Confidence 9999999999999999997432 345667777766553211 0000 1222222234478999999975
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-20 Score=219.75 Aligned_cols=140 Identities=19% Similarity=0.203 Sum_probs=109.2
Q ss_pred ceEEEEEEEEEeCCC---CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCC------
Q 000671 1214 GRIELRQLKIRYRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM------ 1284 (1361)
Q Consensus 1214 G~I~f~nVs~~Y~~~---~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i------ 1284 (1361)
..|+++||+++|+.. ..++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|++||+|+.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 369999999999642 23599999999999999999999999999999999999999999999999999763
Q ss_pred ----------ChHHHhhcCceecCcc--cccccchhhhcCCC--C-CCCHHHH----HHHHhhCcCCCCCCcccccCCch
Q 000671 1285 ----------GLKDLRVKLSIIPQEP--TLFRGSVRTNLDPL--G-LYSDDEI----WKVSQLTPNSRNSRIDIDFPTFN 1345 (1361)
Q Consensus 1285 ----------~l~~LR~~isiIpQdp--~LF~GTIR~NLdP~--~-~~sDeeI----~~AL~~~~~~~~~~~~~~~~~~~ 1345 (1361)
+...+|+++++|||+| .+|++|+++||... . ..++++. .++++..+-. . ..-..
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~------~-~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD------D-SYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC------h-hHhcC
Confidence 4568899999999999 79999999999521 1 1233333 3344444211 0 11123
Q ss_pred hhhhhccccccceec
Q 000671 1346 KFCCRIIKTKQLVTV 1360 (1361)
Q Consensus 1346 ~~~~~~~~~~~~~~~ 1360 (1361)
.+-++|.||||+|.+
T Consensus 173 ~~~~LSgGqkqRvai 187 (320)
T PRK13631 173 SPFGLSGGQKRRVAI 187 (320)
T ss_pred CcccCCHHHHHHHHH
Confidence 345799999999853
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-20 Score=195.35 Aligned_cols=154 Identities=22% Similarity=0.218 Sum_probs=106.1
Q ss_pred cceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCeE--EEEecCCcCCCCCHHHHhhcCCCCCHHHHHH
Q 000671 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI--AYVSQTSWIQSGSIRDNILYGKPMDKARYDK 691 (1361)
Q Consensus 614 ~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~i--ayv~Q~~~i~~~ti~eni~~g~~~~~~~~~~ 691 (1361)
++..+...++.+.+|+||||||||++|.+|.=.+--.+-........ .+-...++-..++|+ +.|
T Consensus 13 ~~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~f----------- 79 (178)
T cd03239 13 RDETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVE--ITF----------- 79 (178)
T ss_pred CCCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEE--EEE-----------
Confidence 34444444444999999999999999999853221100000000000 010111111111111 111
Q ss_pred HHHHhcchHHHhcCCCCCCccccCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc
Q 000671 692 AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY----NDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767 (1361)
Q Consensus 692 ~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~----~~~~illLDep~salD~~~~~~i~~~~~~~~~ 767 (1361)
...+..+|.||.|++ ||||||||++|||++. .+|+++++|||+++||+...+.+.+.+.....
T Consensus 80 -------~~~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~ 146 (178)
T cd03239 80 -------DKSYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK 146 (178)
T ss_pred -------ECceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 223678899999987 9999999999999984 79999999999999999999998876554444
Q ss_pred CCcEEEEEccCchHHhhcCeEEEEeC
Q 000671 768 EKKTVILVTHQVEFLSEVDRILVLEG 793 (1361)
Q Consensus 768 ~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1361)
+|+|+|++||+.+.+..+|+++.+++
T Consensus 147 ~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 147 HTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 57899999999999888999999965
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-20 Score=208.24 Aligned_cols=143 Identities=31% Similarity=0.461 Sum_probs=118.0
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
|+++|++++|+.+. .+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++++.+...+|+.+++
T Consensus 1 l~~~~l~~~~~~~~-~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPGR-PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCCC-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57999999996433 49999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccccccchhhhcCCC-CCCCHHHHHHHHhhCcCCCC-CCc--ccccCCchhhhhhcccccccee
Q 000671 1296 IPQEPTLFRGSVRTNLDPL-GLYSDDEIWKVSQLTPNSRN-SRI--DIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1296 IpQdp~LF~GTIR~NLdP~-~~~sDeeI~~AL~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+||+|.+|++|+++|+... ...+++++.++++.++-... ... +++..-....-.+|.||||+|.
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~ 147 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVA 147 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHH
Confidence 9999999999999999632 23567777777776542110 111 3444444456689999999975
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-20 Score=206.36 Aligned_cols=137 Identities=23% Similarity=0.312 Sum_probs=110.6
Q ss_pred eEEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHH---H
Q 000671 1215 RIELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---L 1289 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~---L 1289 (1361)
-++++||+++|+.+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|++||.|+.+++.+. +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 35999999999999999999999999999999999999999999999999999988754 3
Q ss_pred h-hcCceecCccccccc-chhhhcCC---CCCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1290 R-VKLSIIPQEPTLFRG-SVRTNLDP---LGLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1290 R-~~isiIpQdp~LF~G-TIR~NLdP---~~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
| ++++++||+|.+|.+ |+++|+.. +.... ++++.++++..+- +..--.+...+|.||||+|.
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl--------~~~~~~~~~~LSgG~~qrl~ 155 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGL--------EHRANHRPSELSGGERQRVA 155 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--------chhhhCChhhCCHHHHHHHH
Confidence 3 679999999999986 99999852 11222 3456777777632 21122344679999999975
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-20 Score=207.25 Aligned_cols=136 Identities=30% Similarity=0.434 Sum_probs=112.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCc
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
.++++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+..++|+.++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 5899999999953 35999999999999999999999999999999999999999999999999999988889999999
Q ss_pred eecCcccccccchhhhcCCC---CCCCHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1295 IIPQEPTLFRGSVRTNLDPL---GLYSDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1295 iIpQdp~LF~GTIR~NLdP~---~~~sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++||+|.+|++|+++|+... ....++++.+.++..+-.. .. .+ .+.-.+|.||||+|.
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~--~~----~~~~~LS~G~~qrl~ 141 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK-EY--AT----RDVKNLSGGEAQRVS 141 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH-HH--hh----CCcccCCHHHHHHHH
Confidence 99999999999999999632 1123456777777764310 00 11 234579999999975
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-20 Score=212.17 Aligned_cols=137 Identities=21% Similarity=0.310 Sum_probs=112.5
Q ss_pred eEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcC
Q 000671 1215 RIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1361)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999642 24599999999999999999999999999999999999999999999999999998999999999
Q ss_pred ceecCcc--cccccchhhhcCCCC---CCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1294 SIIPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1294 siIpQdp--~LF~GTIR~NLdP~~---~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++|||+| .++..|+++||.... ..+ ++++.++++..+-. .. .|.. ...+|.||||+|.
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~--~~~~----~~~LSgGq~qrv~ 150 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ--DF--KERE----PARLSGGQKQRVA 150 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH--hH--hhCC----cccCCHHHHHHHH
Confidence 9999998 366779999996210 123 34577888887432 11 1222 2579999999975
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-20 Score=203.88 Aligned_cols=146 Identities=32% Similarity=0.509 Sum_probs=117.0
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcC
Q 000671 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1361)
Q Consensus 1214 G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1361)
|+|+++|++++|.....++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++.+++...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 57999999999964334599999999999999999999999999999999999999999999999999988888889999
Q ss_pred ceecCcccccccchhhhcCCC-CCCCHHHHHHHHhhCcCC--CCCCc-ccccCCchhhhhhcccccccee
Q 000671 1294 SIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKVSQLTPNS--RNSRI-DIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1294 siIpQdp~LF~GTIR~NLdP~-~~~sDeeI~~AL~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++||+|.+|..|+++|+... ...+++++.++++..+-. .+... ++|+......-.+|.||||+|.
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~ 150 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVA 150 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHH
Confidence 999999999999999999632 224556677777765321 11111 2333322334479999999975
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-20 Score=198.91 Aligned_cols=95 Identities=32% Similarity=0.612 Sum_probs=88.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
|+++|++++|+...+++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+. ...+|+++++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 579999999965434599999999999999999999999999999999999999999999999999877 6788999999
Q ss_pred ecCcccccccchhhhc
Q 000671 1296 IPQEPTLFRGSVRTNL 1311 (1361)
Q Consensus 1296 IpQdp~LF~GTIR~NL 1311 (1361)
+||+|.+|++|+++|+
T Consensus 80 ~~q~~~~~~~tv~~~i 95 (178)
T cd03247 80 LNQRPYLFDTTLRNNL 95 (178)
T ss_pred EccCCeeecccHHHhh
Confidence 9999999999999998
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-20 Score=203.89 Aligned_cols=135 Identities=23% Similarity=0.331 Sum_probs=110.0
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcC
Q 000671 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1361)
|+++||+++|.... +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999996431 159999999999999999999999999999999999999999999999999986 456789999
Q ss_pred ceecCccccccc-chhhhcCC---CCCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1294 SIIPQEPTLFRG-SVRTNLDP---LGLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1294 siIpQdp~LF~G-TIR~NLdP---~~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++||+|.+|.+ |+++|+.. ....+ ++++.++++..+ ++...-.....+|.||||+|.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~--------l~~~~~~~~~~LS~G~~qrv~ 146 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLG--------MEELLDRRVGGFSTGMRQKVA 146 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC--------CHHHHhhhhhhcCHHHHHHHH
Confidence 999999999996 99999841 11122 345677777763 222223466789999999975
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.6e-20 Score=215.39 Aligned_cols=136 Identities=24% Similarity=0.352 Sum_probs=110.7
Q ss_pred EEEEEEEEEeCCC--CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHH---Hh
Q 000671 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LR 1290 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~--~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~---LR 1290 (1361)
|+++||+++|+.+ ..++|+||||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.||.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 235999999999999999999999999999999999999999999999999999987655 58
Q ss_pred hcCceecCcccccc-cchhhhcC-CCC--CCCH----HHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1291 VKLSIIPQEPTLFR-GSVRTNLD-PLG--LYSD----DEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1291 ~~isiIpQdp~LF~-GTIR~NLd-P~~--~~sD----eeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++|++|||++.+|. .|+++|+. |.. ..+. +++.++|+.++-.. . .| .....+|.||||+|.
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~--~--~~----~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD--K--HD----SYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch--h--hh----CChhhCCHHHHHHHH
Confidence 89999999999996 69999995 221 1232 34667788774321 1 22 234579999999985
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-20 Score=192.78 Aligned_cols=138 Identities=23% Similarity=0.346 Sum_probs=112.9
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCC-----cEEEEcCeeCCC--CCh
Q 000671 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG-----GSILIDGVDICS--MGL 1286 (1361)
Q Consensus 1214 G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~-----G~I~IDGvDI~~--i~l 1286 (1361)
..++++|+++-|.. ..+|+|||++|++++.+|++|||||||||++++|-|+.|..+ |+|.+||.||-+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 36899999999964 359999999999999999999999999999999999999976 999999999987 579
Q ss_pred HHHhhcCceecCcccccccchhhhcCCC----CCC---CHHHHHHHHhhCc--CCCCCCcccccCCchhhhhhccccccc
Q 000671 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLY---SDDEIWKVSQLTP--NSRNSRIDIDFPTFNKFCCRIIKTKQL 1357 (1361)
Q Consensus 1287 ~~LR~~isiIpQdp~LF~GTIR~NLdP~----~~~---sDeeI~~AL~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1357 (1361)
-.||+++|+|.|.|.-|..||+||+... +.. -||-+.++|+.|. ++-.++++ .+ +-.+|.||+|+
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~--~s----a~~LSGGQQQR 157 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLH--KS----ALGLSGGQQQR 157 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhh--CC----ccCCChhHHHH
Confidence 9999999999999999999999999621 111 2455667777774 33344431 11 23489999998
Q ss_pred ee
Q 000671 1358 VT 1359 (1361)
Q Consensus 1358 ~~ 1359 (1361)
+.
T Consensus 158 Lc 159 (253)
T COG1117 158 LC 159 (253)
T ss_pred HH
Confidence 64
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-20 Score=201.56 Aligned_cols=131 Identities=24% Similarity=0.270 Sum_probs=106.3
Q ss_pred EEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhc
Q 000671 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~---~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~ 1292 (1361)
|+++||+++|.+.. +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997542 3599999999999999999999999999999999999999999999999 6
Q ss_pred CceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCC---CCCcccccCCchhhhhhcccccccee
Q 000671 1293 LSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSR---NSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1293 isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++++||+|.+|++|+++|+......++++.+++++.++-.. ....++++......-.+|.||||+|.
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~ 137 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRIS 137 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHH
Confidence 99999999999999999998654566677778777654221 11113333333445578999999975
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.6e-20 Score=212.08 Aligned_cols=138 Identities=19% Similarity=0.293 Sum_probs=109.1
Q ss_pred eEEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCC----ChH
Q 000671 1215 RIELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM----GLK 1287 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~---~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i----~l~ 1287 (1361)
.|+++||+++|+++. .++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 3599999999999999999999999999999999999999999999999999764 356
Q ss_pred HHhhcCceecCcc--cccccchhhhcCC--CC-CCCHH----HHHHHHhhCcCCCCCCccccc-CCchhhhhhccccccc
Q 000671 1288 DLRVKLSIIPQEP--TLFRGSVRTNLDP--LG-LYSDD----EIWKVSQLTPNSRNSRIDIDF-PTFNKFCCRIIKTKQL 1357 (1361)
Q Consensus 1288 ~LR~~isiIpQdp--~LF~GTIR~NLdP--~~-~~sDe----eI~~AL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 1357 (1361)
.+|++|++|||+| .+|++|+++||.. .. ..+.+ ++.++++..+ ++. ..-.....+|.||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~g--------L~~~~~~~~~~~LSgGq~qr 153 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLG--------FSRDVMSQSPFQMSGGQMRK 153 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcC--------CChhhhhCCcccCCHHHHHH
Confidence 7899999999998 6899999999952 11 12333 3445555542 221 1123456899999999
Q ss_pred eec
Q 000671 1358 VTV 1360 (1361)
Q Consensus 1358 ~~~ 1360 (1361)
|.+
T Consensus 154 v~l 156 (286)
T PRK13646 154 IAI 156 (286)
T ss_pred HHH
Confidence 853
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-19 Score=181.86 Aligned_cols=200 Identities=23% Similarity=0.364 Sum_probs=157.1
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcCe-----------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g~----------- 659 (1361)
++.+|++.+..|+|+.. .|++-|+|+++|.|....+||.|||||||||++|.|-.-...|.|.+.|+
T Consensus 10 ~~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~S 87 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESS 87 (291)
T ss_pred ccceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccccc
Confidence 46789999999999865 38999999999999999999999999999999999987777788888663
Q ss_pred --EEEEecC----------CcCC-CCCHHHHhhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCChHHH
Q 000671 660 --IAYVSQT----------SWIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1361)
Q Consensus 660 --iayv~Q~----------~~i~-~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSgGQk 725 (1361)
..|..-+ --+| +.++ +...||-. .+.+|-++.++...+ |+ .-+.+.+|-|||
T Consensus 88 gdl~YLGgeW~~~~~~agevplq~D~sa-e~mifgV~g~dp~Rre~LI~iLDI--dl-----------~WRmHkvSDGqr 153 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAGEVPLQGDISA-EHMIFGVGGDDPERREKLIDILDI--DL-----------RWRMHKVSDGQR 153 (291)
T ss_pred CceeEecccccccccccccccccccccH-HHHHhhccCCChhHhhhhhhheec--cc-----------eEEEeeccccch
Confidence 3443321 1122 2233 44456544 345666666654322 22 246678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEccCchHHhh-cCeEEEEeCCeEEEecChH
Q 000671 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1361)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1361)
+||.|+..|++.=+++||||.|-.||.-.+..+.+.+.... .+|.|+|.+||-.+=+.. ..+++.|++|+++..-+|+
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 99999999999999999999999999999999887666554 368999999999988876 8999999999999866666
Q ss_pred HHH
Q 000671 804 ELL 806 (1361)
Q Consensus 804 ~l~ 806 (1361)
++.
T Consensus 234 ~i~ 236 (291)
T KOG2355|consen 234 KIK 236 (291)
T ss_pred hhh
Confidence 554
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6e-20 Score=211.82 Aligned_cols=138 Identities=28% Similarity=0.412 Sum_probs=110.7
Q ss_pred EEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCC--hHHHh
Q 000671 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG--LKDLR 1290 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~---~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~--l~~LR 1290 (1361)
|+++||+++|++.. .++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+++.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 89999999996432 35999999999999999999999999999999999999999999999999998754 46889
Q ss_pred hcCceecCcc--cccccchhhhcCCCC---CCCH----HHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1291 VKLSIIPQEP--TLFRGSVRTNLDPLG---LYSD----DEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1291 ~~isiIpQdp--~LF~GTIR~NLdP~~---~~sD----eeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++++|||+| .+|+.|+++||.... ..++ +++.++|+.++-...+. .| .+.-.+|.||||+|.
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~--~~----~~~~~LSgGq~qrv~ 154 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDY--KD----KSPFELSGGQKRRVA 154 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhh--cc----CCcccCCHHHHHHHH
Confidence 9999999998 578999999996211 1333 34677788775431111 12 233579999999975
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=6e-20 Score=205.98 Aligned_cols=144 Identities=25% Similarity=0.364 Sum_probs=113.2
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
|+++|++++|.....++|+|+||++++||.+||+|++|||||||+++|.|++.|++|+|.+||.++.+.+.+.+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57999999996443359999999999999999999999999999999999999999999999999999888899999999
Q ss_pred ecCcccccccchhhhcCCCC-CCCHHHHHHHHhhCcCCC--C-CCcccccCCchhhhhhcccccccee
Q 000671 1296 IPQEPTLFRGSVRTNLDPLG-LYSDDEIWKVSQLTPNSR--N-SRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1296 IpQdp~LF~GTIR~NLdP~~-~~sDeeI~~AL~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+||||.+|.+|+++|+..+. .++.+++.++++..+-.. + -..+++..-....-.+|.||||+|.
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 148 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIA 148 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHH
Confidence 99999999999999997432 234555555444432110 0 0002222223345679999999975
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-20 Score=205.80 Aligned_cols=136 Identities=27% Similarity=0.407 Sum_probs=109.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhccc-----CCCCcEEEEcCeeCCCCC--hHH
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV-----EPAGGSILIDGVDICSMG--LKD 1288 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~-----ep~~G~I~IDGvDI~~i~--l~~ 1288 (1361)
|+++||+++|+. . ++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.|+.+++ ...
T Consensus 1 i~~~~l~~~~~~-~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD-K-HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC-c-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 579999999964 2 4999999999999999999999999999999999999 999999999999998887 677
Q ss_pred HhhcCceecCcccccccchhhhcCCC----CCC----CHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1289 LRVKLSIIPQEPTLFRGSVRTNLDPL----GLY----SDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1289 LR~~isiIpQdp~LF~GTIR~NLdP~----~~~----sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+|++++++||+|.+|..|+++|+... +.. .++++.++++..+-.. .+ +... ..-.+|.||||+|.
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~--~~~~--~~~~LSgG~~qrv~ 151 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD--EV--KDRL--HALGLSGGQQQRLC 151 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh--HH--hccC--CcccCCHHHHHHHH
Confidence 89999999999999988999999631 111 1345677777764321 11 1110 03579999999975
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-20 Score=208.39 Aligned_cols=139 Identities=17% Similarity=0.199 Sum_probs=112.5
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC---CCCcEEEEcCeeCCCCChHHHhh
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE---PAGGSILIDGVDICSMGLKDLRV 1291 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~e---p~~G~I~IDGvDI~~i~l~~LR~ 1291 (1361)
.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.|+.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999953 359999999999999999999999999999999999985 69999999999999998889999
Q ss_pred cCceecCcccccccchhhhcCCCC---C------CCHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1292 KLSIIPQEPTLFRGSVRTNLDPLG---L------YSDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1292 ~isiIpQdp~LF~GTIR~NLdP~~---~------~sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++++||+|.+|..|+++|+.... . ..++++.++++..+-.. .+ +...-..+..+|.||||+|.
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~--~~~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFE--EV--KDKLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCCh--hh--hHHhcCCcccCCHHHHHHHH
Confidence 999999999999999999995321 1 12335677788764311 00 01122345689999999985
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-20 Score=203.90 Aligned_cols=136 Identities=26% Similarity=0.347 Sum_probs=108.3
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHH----H
Q 000671 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD----L 1289 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~----L 1289 (1361)
++++||+++|.++. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+.++ .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996431 35999999999999999999999999999999999999999999999999999887543 4
Q ss_pred hhcCceecCccccccc-chhhhcCC---CCCC----CHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1290 RVKLSIIPQEPTLFRG-SVRTNLDP---LGLY----SDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1290 R~~isiIpQdp~LF~G-TIR~NLdP---~~~~----sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
|++++++||+|.+|.+ |+++|+.- +... .++++.++++..+-. .. .|. ..-.+|.||||+|.
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~~----~~~~LS~G~~qrv~ 150 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG--DR--LNH----YPSELSGGQQQRVA 150 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc--hh--hhc----ChhhcCHHHHHHHH
Confidence 6789999999999987 99999952 1111 134567777776321 11 122 23479999999985
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-20 Score=206.15 Aligned_cols=144 Identities=30% Similarity=0.461 Sum_probs=114.7
Q ss_pred EEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCc
Q 000671 1216 IELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
|+++|++++|... ..++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 5789999999642 235999999999999999999999999999999999999999999999999999888888899999
Q ss_pred eecCcccccccchhhhcCCC-CCCCHHHHHHHHhhCcCCC-CCCc--ccccCCchhhhhhcccccccee
Q 000671 1295 IIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKVSQLTPNSR-NSRI--DIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1295 iIpQdp~LF~GTIR~NLdP~-~~~sDeeI~~AL~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++||+|.+|++|+++|+... ...+.+++.++++..+-.. -... +++.........+|.||||+|.
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 149 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIA 149 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHH
Confidence 99999999999999999632 2345566666665543111 0011 2333333445789999999985
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-20 Score=209.91 Aligned_cols=136 Identities=23% Similarity=0.341 Sum_probs=112.3
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCc
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
-|+++||+++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+.+.+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999633 35999999999999999999999999999999999999999999999999999998899999999
Q ss_pred eecCcc--cccccchhhhcCCCC---CCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1295 IIPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1295 iIpQdp--~LF~GTIR~NLdP~~---~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++||+| .+|..|+++|+.... ..+ ++++.++++..+-. .. .|.++ -.+|.||||+|.
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~--~~~~~----~~LSgG~~qrv~ 148 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW--DF--RDKPP----YHLSYGQKKRVA 148 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--HH--hcCCh----hhCCHHHHHHHH
Confidence 999999 688999999996211 122 34567778777532 11 23222 379999999985
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.6e-20 Score=205.68 Aligned_cols=135 Identities=30% Similarity=0.403 Sum_probs=109.3
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCC---hHHHhhc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDLRVK 1292 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~---l~~LR~~ 1292 (1361)
++++||+++|..+ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 35999999999999999999999999999999999999999999999999999887 5678999
Q ss_pred CceecCcccccc-cchhhhcCC-C-----------CCC---CHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccc
Q 000671 1293 LSIIPQEPTLFR-GSVRTNLDP-L-----------GLY---SDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQ 1356 (1361)
Q Consensus 1293 isiIpQdp~LF~-GTIR~NLdP-~-----------~~~---sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1356 (1361)
++++||++.+|. .|+++|+.. . +.. .++++.++++..+-. ...-.....+|.||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--------~~~~~~~~~LS~G~~q 151 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL--------DKAYQRADQLSGGQQQ 151 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh--------hhhCCCcccCCHHHHH
Confidence 999999999887 699999952 1 111 234566777776421 1112245689999999
Q ss_pred cee
Q 000671 1357 LVT 1359 (1361)
Q Consensus 1357 ~~~ 1359 (1361)
+|.
T Consensus 152 rv~ 154 (241)
T cd03256 152 RVA 154 (241)
T ss_pred HHH
Confidence 985
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.80 E-value=9e-20 Score=202.60 Aligned_cols=135 Identities=21% Similarity=0.312 Sum_probs=107.8
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
|+++||+++|..+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.. .++|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5799999999643245999999999999999999999999999999999999999999999999998753 677889999
Q ss_pred ecCccccc-ccchhhhcCCCC---CCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1296 IPQEPTLF-RGSVRTNLDPLG---LYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1296 IpQdp~LF-~GTIR~NLdP~~---~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+||+|.+| ..|+++|+.-.. ..+ +++++++++..+-. .. .|. ..-.+|.||||+|.
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~~----~~~~LS~G~~qrv~ 143 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT--DK--ANK----RARTLSGGMKRKLS 143 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HH--HhC----hhhhCCHHHHHHHH
Confidence 99999999 579999985211 112 24567777766321 11 122 23579999999975
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=207.98 Aligned_cols=133 Identities=23% Similarity=0.326 Sum_probs=113.2
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcC
Q 000671 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1361)
Q Consensus 1214 G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1361)
..|+|+||+.+|. ...+|+||||+|++||.+.++|||||||||++++|.||..|++|+|.|||.||..++.+ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 4699999999997 34599999999999999999999999999999999999999999999999999999988 5899
Q ss_pred ceecCccccccc-chhhhcCCCCC-----CCHH----HHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1294 SIIPQEPTLFRG-SVRTNLDPLGL-----YSDD----EIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1294 siIpQdp~LF~G-TIR~NLdP~~~-----~sDe----eI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++|+||.-||.- ||++|+. |+- ..++ .+.++|+.++-.. .-.-.---+|.||+|+|.
T Consensus 80 g~VFQ~YALFPHltV~~NVa-fGLk~~~~~~~~~i~~rv~e~L~lV~L~~--------~~~R~p~qLSGGQqQRVA 146 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVA-FGLKVRKKLKKAEIKARVEEALELVGLEG--------FADRKPHQLSGGQQQRVA 146 (352)
T ss_pred ceeecCcccCCCCcHHHHhh-hhhhhcCCCCHHHHHHHHHHHHHHcCchh--------hhhhChhhhChHHHHHHH
Confidence 999999999987 9999996 221 2333 5678888875333 233344578999999985
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-18 Score=221.26 Aligned_cols=93 Identities=28% Similarity=0.445 Sum_probs=83.9
Q ss_pred ccCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHhhcCeEEE
Q 000671 713 IGQRGLNLSGGQKQRIQLARAVYNDA--DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILV 790 (1361)
Q Consensus 713 ig~~g~~LSgGQkqRv~lARal~~~~--~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~ 790 (1361)
.++...+|||||+|||.||||+.++| ++|||||||++||++..+.+.+.+.+...+|+|||+|+|+++.+..||+|++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 35778899999999999999999986 8999999999999999999988766655679999999999999988999999
Q ss_pred E------eCCeEEEecChHHH
Q 000671 791 L------EGGQITQSGNYQEL 805 (1361)
Q Consensus 791 l------~~G~i~~~g~~~~l 805 (1361)
| ++|+|++.|+++++
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el 581 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEI 581 (924)
T ss_pred ecccccCCCCEEeeccCHHHH
Confidence 9 89999988887665
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-19 Score=204.14 Aligned_cols=134 Identities=28% Similarity=0.366 Sum_probs=108.2
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCCh---HHHhhc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l---~~LR~~ 1292 (1361)
|+++|++++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999953 349999999999999999999999999999999999999999999999999988764 567899
Q ss_pred CceecCccccccc-chhhhcCC----CCCCCH----HHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1293 LSIIPQEPTLFRG-SVRTNLDP----LGLYSD----DEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1293 isiIpQdp~LF~G-TIR~NLdP----~~~~sD----eeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++|||+|.+|.+ |+++|+.- +...+. +++.++++..+-. .. .| .....+|.||||+|.
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~----~~~~~LSgG~~qrv~ 146 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR--GA--ED----LYPAELSGGMKKRVA 146 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc--hh--hc----CChhhCCHHHHHHHH
Confidence 9999999999987 99999952 111232 3456667766421 11 12 233579999999985
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-19 Score=194.82 Aligned_cols=137 Identities=26% Similarity=0.357 Sum_probs=106.3
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCCh---HHH-
Q 000671 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDL- 1289 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l---~~L- 1289 (1361)
++++||+..|..+. -.||+|+||+|++||.|||+||||||||||++.|-++-.|++|.|.++|.|+..++- ..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996442 359999999999999999999999999999999999999999999999999999984 444
Q ss_pred hhcCceecCccccccc-chhhhcC-C--CCCCC----HHHHHHHHhhCcCCCCCCcccccCCc-hhhhhhccccccceec
Q 000671 1290 RVKLSIIPQEPTLFRG-SVRTNLD-P--LGLYS----DDEIWKVSQLTPNSRNSRIDIDFPTF-NKFCCRIIKTKQLVTV 1360 (1361)
Q Consensus 1290 R~~isiIpQdp~LF~G-TIR~NLd-P--~~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 1360 (1361)
|++||+|+|+..|.+. |++||+. | +.... ++.+.+.++..+ ++...- ..--.+|.||||+|.+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lg--------l~~~~~~~~p~eLSGGqqQRVAI 153 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLG--------LEDRLLKKKPSELSGGQQQRVAI 153 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcC--------ChhhhccCCchhcCHHHHHHHHH
Confidence 4679999999999987 9999996 3 22222 233344444432 221111 1123689999999863
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-19 Score=207.09 Aligned_cols=137 Identities=26% Similarity=0.334 Sum_probs=110.2
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCc
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
.|+++|++++|+++..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 59999999999644446999999999999999999999999999999999999999999999999999888889999999
Q ss_pred eecCcc--cccccchhhhcCCC---CCCCHHH----HHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1295 IIPQEP--TLFRGSVRTNLDPL---GLYSDDE----IWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1295 iIpQdp--~LF~GTIR~NLdP~---~~~sDee----I~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++||+| .++..|+++||... ...++++ +.++++..+- +...-...-.+|.||||++.
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l--------~~~~~~~~~~LS~G~~qrl~ 152 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGM--------EDYLDKEPQNLSGGQKQRVA 152 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC--------HHHhhCCcccCCHHHHHHHH
Confidence 999998 45677999999621 1234443 4455555532 11112233589999999875
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-19 Score=200.26 Aligned_cols=135 Identities=21% Similarity=0.247 Sum_probs=109.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChH---HHhhc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRVK 1292 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~---~LR~~ 1292 (1361)
++++|++++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.. .+|+.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 3599999999999999999999999999999999999999999999999999987643 47889
Q ss_pred CceecCcccccc-cchhhhcCCC----C---CCCHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1293 LSIIPQEPTLFR-GSVRTNLDPL----G---LYSDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1293 isiIpQdp~LF~-GTIR~NLdP~----~---~~sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++++||+|.+|. .|+++|+... + ...+++++++++..+-.. . .+.. ...+|.||||+|.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~--~~~~----~~~LS~G~~qrl~ 147 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEH--K--ADAF----PEQLSGGEQQRVA 147 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh--h--hhCC----hhhCCHHHHHHHH
Confidence 999999999996 5999998521 1 112456788888874321 1 1222 2579999999975
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-19 Score=205.94 Aligned_cols=141 Identities=20% Similarity=0.292 Sum_probs=112.1
Q ss_pred cceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEEcCeeCCC--CC
Q 000671 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MG 1285 (1361)
Q Consensus 1213 ~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~e-----p~~G~I~IDGvDI~~--i~ 1285 (1361)
...|+++||+++|++ ..+|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.|+.. .+
T Consensus 11 ~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 11 NIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 457999999999964 349999999999999999999999999999999999988 689999999999863 56
Q ss_pred hHHHhhcCceecCcccccccchhhhcCCCC---CC---CHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDPLG---LY---SDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1286 l~~LR~~isiIpQdp~LF~GTIR~NLdP~~---~~---sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
..++|++++++||+|.+|.+|+++||.... .+ .++++.++++..+...+ ++..--.....+|.||||+|.
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----l~~~~~~~~~~LS~G~~qrl~ 164 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE----CKDKLNESGYSLSGGQQQRLC 164 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch----hhhhhCCCcccCCHHHHHHHH
Confidence 778899999999999999999999996321 11 24556777887753211 011111234579999999975
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.5e-20 Score=201.88 Aligned_cols=135 Identities=24% Similarity=0.278 Sum_probs=108.4
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCCh---HHHhhc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l---~~LR~~ 1292 (1361)
++++|++++|+.+ ..+|+|+||++++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+. ...|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 359999999999999999999999999999999999999999999999999988764 357889
Q ss_pred CceecCccccccc-chhhhcCCC---CCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1293 LSIIPQEPTLFRG-SVRTNLDPL---GLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1293 isiIpQdp~LF~G-TIR~NLdP~---~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++|||+|.+|.+ |+++|+... ...+ ++++.++++..+-.. . .|.+ .-.+|.||||+|.
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~--~~~~----~~~LS~G~~qrv~ 146 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSH--K--HRAL----PAELSGGEQQRVA 146 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH--H--hhCC----hhhcCHHHHHHHH
Confidence 9999999999985 999999521 1122 345677777764211 1 1222 2479999999985
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-19 Score=207.81 Aligned_cols=137 Identities=23% Similarity=0.300 Sum_probs=111.2
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCc
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
-++++||+++|+...+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|++||.|+.+.+...+|++++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999643445999999999999999999999999999999999999999999999999999988888999999
Q ss_pred eecCcc--cccccchhhhcCCC-C--CCCH----HHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1295 IIPQEP--TLFRGSVRTNLDPL-G--LYSD----DEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1295 iIpQdp--~LF~GTIR~NLdP~-~--~~sD----eeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++||+| .+++.|+++||... . ..+. +++.++++..+-. .. .+.+ .-.+|.||||+|.
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~--~~~~----~~~LS~G~~qrv~ 150 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGME--DF--LNRE----PHRLSGGQKQRVA 150 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCCh--hh--hhCC----cccCCHHHHHHHH
Confidence 999999 56778999999621 1 1233 3456667765421 11 2222 2379999999875
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-19 Score=198.49 Aligned_cols=131 Identities=23% Similarity=0.271 Sum_probs=106.1
Q ss_pred EEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCcee
Q 000671 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296 (1361)
Q Consensus 1217 ~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiI 1296 (1361)
+++|++++|..+ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ...|++++++
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 478999999642 359999999999999999999999999999999999999999999999999865 5677899999
Q ss_pred cCcc--cccccchhhhcCCCC---CCCHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1297 PQEP--TLFRGSVRTNLDPLG---LYSDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1297 pQdp--~LF~GTIR~NLdP~~---~~sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
||+| .+|+.|+++|+.... ...++++.++++..+-.. . .|.+ .-.+|.||||+|.
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~--~--~~~~----~~~LS~G~~qrv~ 136 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA--L--KERH----PLSLSGGQKQRLA 136 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCch--h--cCCC----chhCCHHHHHHHH
Confidence 9998 478899999996321 122457888888875321 1 1222 2379999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-19 Score=200.62 Aligned_cols=135 Identities=30% Similarity=0.397 Sum_probs=108.0
Q ss_pred EEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCcee
Q 000671 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296 (1361)
Q Consensus 1217 ~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isiI 1296 (1361)
+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+.+..|++++++
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 47899999964324599999999999999999999999999999999999999999999999999988888899999999
Q ss_pred cCcc--cccccchhhhcCCC---CCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1297 PQEP--TLFRGSVRTNLDPL---GLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1297 pQdp--~LF~GTIR~NLdP~---~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
||+| .++..|+++|+... ...+ ++++.++++..+-. .. .| .....+|.||||+|.
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~----~~~~~LSgG~~qrv~ 144 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE--GL--RD----RSPFTLSGGQKQRVA 144 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH--hh--hc----CCcccCCHHHHHHHH
Confidence 9998 46788999999531 1122 23455666665321 11 12 233579999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-19 Score=203.70 Aligned_cols=135 Identities=27% Similarity=0.379 Sum_probs=108.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCCh---HHHhhc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l---~~LR~~ 1292 (1361)
|+++||+++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+++. ..+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6899999999633 359999999999999999999999999999999999999999999999999988764 457899
Q ss_pred CceecCcccccc-cchhhhcCC-C-----------CCC---CHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccc
Q 000671 1293 LSIIPQEPTLFR-GSVRTNLDP-L-----------GLY---SDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQ 1356 (1361)
Q Consensus 1293 isiIpQdp~LF~-GTIR~NLdP-~-----------~~~---sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1356 (1361)
++++||+|.+|. .|+++|+.. . +.. .++++.++++..+-. .. .| ...-.+|.||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~----~~~~~LSgG~~q 152 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA--DK--AY----QRADQLSGGQQQ 152 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH--hh--hc----CCcccCCHHHHH
Confidence 999999999987 599999952 1 011 134566777766321 11 12 234579999999
Q ss_pred cee
Q 000671 1357 LVT 1359 (1361)
Q Consensus 1357 ~~~ 1359 (1361)
+|.
T Consensus 153 rv~ 155 (243)
T TIGR02315 153 RVA 155 (243)
T ss_pred HHH
Confidence 985
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-19 Score=199.33 Aligned_cols=132 Identities=22% Similarity=0.275 Sum_probs=109.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
|+++||+++|.. .++|+|+||++++||.++|+|++|||||||+++|.|+.+|++|+|.+||.++.+. .++|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 579999999953 3599999999999999999999999999999999999999999999999999875 677889999
Q ss_pred ecCcccccc-cchhhhcCCC---CCCCHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1296 IPQEPTLFR-GSVRTNLDPL---GLYSDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1296 IpQdp~LF~-GTIR~NLdP~---~~~sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+||+|.+|. .|+++|+... ...+++++.++++..+-. ...-.....+|.||||+|.
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~--------~~~~~~~~~LS~G~~qrv~ 136 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLK--------DSAKKKVKGFSLGMKQRLG 136 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH--------HHHhhhHhhCCHHHHHHHH
Confidence 999998884 6999999532 123567788888887432 1112345689999999974
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-19 Score=205.35 Aligned_cols=142 Identities=24% Similarity=0.285 Sum_probs=112.8
Q ss_pred CcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEEcCeeCCC--C
Q 000671 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--M 1284 (1361)
Q Consensus 1212 ~~G~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~e-----p~~G~I~IDGvDI~~--i 1284 (1361)
.++.|+++|++++|.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 10 ~~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 10 APSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CCceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 3578999999999963 359999999999999999999999999999999999986 589999999999964 4
Q ss_pred ChHHHhhcCceecCcccccccchhhhcCCC----CCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccc
Q 000671 1285 GLKDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQ 1356 (1361)
Q Consensus 1285 ~l~~LR~~isiIpQdp~LF~GTIR~NLdP~----~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1356 (1361)
+...+|++++++||+|.+|..|+++|+... +..+ +++++++++..+-... + +..--.....+|.||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~--~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE--V--KDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh--h--HHHHhcCCCCCCHHHHH
Confidence 567889999999999999999999999621 1122 3567788888753110 0 00112345579999999
Q ss_pred cee
Q 000671 1357 LVT 1359 (1361)
Q Consensus 1357 ~~~ 1359 (1361)
+|.
T Consensus 164 rv~ 166 (260)
T PRK10744 164 RLC 166 (260)
T ss_pred HHH
Confidence 974
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-19 Score=199.62 Aligned_cols=136 Identities=25% Similarity=0.349 Sum_probs=108.1
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHH---h
Q 000671 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL---R 1290 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~L---R 1290 (1361)
|+++||+++|.++. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+++..+. |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 359999999999999999999999999999999999999999999999999998876653 4
Q ss_pred -hcCceecCcccccc-cchhhhcCC---CCCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1291 -VKLSIIPQEPTLFR-GSVRTNLDP---LGLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1291 -~~isiIpQdp~LF~-GTIR~NLdP---~~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++++++||+|.+|. .|+++|+.. ....+ ++++.++++..+- +..--.....+|.||||+|.
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l--------~~~~~~~~~~LS~G~~qrv~ 151 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL--------EHRINHRPSELSGGERQRVA 151 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC--------hhhhhCChhhCCHHHHHHHH
Confidence 68999999999996 599999952 11122 2346667776532 21112233579999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-19 Score=208.25 Aligned_cols=136 Identities=22% Similarity=0.342 Sum_probs=108.9
Q ss_pred EEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCC----CChHH
Q 000671 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS----MGLKD 1288 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~---~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~----i~l~~ 1288 (1361)
|+|+||+++|+++. +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996432 259999999999999999999999999999999999999999999999999963 44678
Q ss_pred HhhcCceecCcc--cccccchhhhcCCCC----CCCH----HHHHHHHhhCcCCCCCCcccccCCchhhhhhccccccce
Q 000671 1289 LRVKLSIIPQEP--TLFRGSVRTNLDPLG----LYSD----DEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLV 1358 (1361)
Q Consensus 1289 LR~~isiIpQdp--~LF~GTIR~NLdP~~----~~sD----eeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1358 (1361)
+|+++++|+|+| .+|.+|+.+|+. ++ ..+. +++.++++..+-. +.. .| ...-.+|.||||+|
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~--~~----~~~~~LSgGqkqrv 153 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVA-FGPQNFGIPKEKAEKIAAEKLEMVGLA-DEF--WE----KSPFELSGGQMRRV 153 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHH-hHHHHcCCCHHHHHHHHHHHHHHcCCC-hhh--cc----CCcccCCHHHHHHH
Confidence 899999999998 799999999995 21 1232 3456677766431 111 12 22347899999997
Q ss_pred e
Q 000671 1359 T 1359 (1361)
Q Consensus 1359 ~ 1359 (1361)
.
T Consensus 154 a 154 (288)
T PRK13643 154 A 154 (288)
T ss_pred H
Confidence 5
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-19 Score=191.69 Aligned_cols=96 Identities=42% Similarity=0.796 Sum_probs=90.3
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
++++|++++|....+.+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999996543359999999999999999999999999999999999999999999999999999988889999999
Q ss_pred ecCcccccccchhhhc
Q 000671 1296 IPQEPTLFRGSVRTNL 1311 (1361)
Q Consensus 1296 IpQdp~LF~GTIR~NL 1311 (1361)
+||+|.+|++|+++|+
T Consensus 81 ~~~~~~~~~~t~~e~l 96 (171)
T cd03228 81 VPQDPFLFSGTIRENI 96 (171)
T ss_pred EcCCchhccchHHHHh
Confidence 9999999999999998
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-19 Score=199.04 Aligned_cols=143 Identities=13% Similarity=0.151 Sum_probs=112.8
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCCh----HHHhh
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL----KDLRV 1291 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l----~~LR~ 1291 (1361)
|.+.|..++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ...|+
T Consensus 1 ~~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 1 VQVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred CeeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 3578999999766 459999999999999999999999999999999999999999999999999987653 34678
Q ss_pred cCceecCcccccccchhhhcCCCCCCCHHHHHHHHhhCcCCC--C-CCcccccCCchhhhhhcccccccee
Q 000671 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSR--N-SRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1292 ~isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
.++++||+|.+|+.|+++||.....+++++.+++++..+-.. + ...+.++.-.....++|.||||+|.
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~ 150 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRIC 150 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHH
Confidence 899999999999999999997544456666777777663211 0 0112222222345689999999975
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.3e-16 Score=174.87 Aligned_cols=269 Identities=20% Similarity=0.213 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000671 280 IFIAICALLRTIAVVVGPLLLYAFVNYSNRGEEN-LQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVY 358 (1361)
Q Consensus 280 ~~~~~~~~~~~~~~~~~P~ll~~~i~~~~~~~~~-~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~riR~~l~~~Iy 358 (1361)
++..++.++..+...+.|+++..+++...++..+ ....+.++..+++..++.......+.+...+.+.+++..+...+|
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888999999999986654333 344555555555555566666666666688999999999999999
Q ss_pred HHHhcCCcccCCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000671 359 QKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSL-ALQLFLAIGVLFGVVGL-GALPGLVLFLICGLLNVP 436 (1361)
Q Consensus 359 ~K~L~ls~~~~~~~~~G~ivNlms~D~~ri~~~~~~~~~~w~~-plqi~va~~~L~~~lG~-~~l~gl~v~~l~~~l~~~ 436 (1361)
+|.++.+....+++++|+++|.++.|++++.+........+.. .+.+++++++++ .++| .+++.++++.+..++...
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~l~~l~~~~~~~~~~~~ 160 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLF-FISWKLALILLIILPLLFLISFI 160 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhccc-ccccccccccchhhhhhHhhhhh
Confidence 9999998876667889999999999999999876654444433 344444444443 3344 233344445555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000671 437 FAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTV-IYWMSPTIIS 515 (1361)
Q Consensus 437 ~~~~~~~~q~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~-~~~~~p~~v~ 515 (1361)
+.+..++..++..+..+++.+.++|.++|+|+||.|++|+.+.++.++.+++..+..++.......... ..........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (275)
T PF00664_consen 161 FSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIV 240 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999988887665554444333332222 2222222222
Q ss_pred HHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHH
Q 000671 516 SVIFLGCAL-TGSAPLNASTIFTVLATLRSMGEPV 549 (1361)
Q Consensus 516 ~~~f~~~~l-~~~~~Lt~~~~Ft~l~lf~~l~~pl 549 (1361)
.+.+.+..+ ..++.++++.+++.+.+++.+..|+
T Consensus 241 ~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 241 LILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 333333344 5568999999999999999999886
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-18 Score=199.69 Aligned_cols=206 Identities=21% Similarity=0.331 Sum_probs=165.5
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcccceeEEecCCeEEEEeCCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1361)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~llg~~~~~~G~v~~~g------------ 658 (1361)
.+..++++|.+..=+ ...+.+++|||++.+||+++|.|-.|-|-+-|+.+|.|+.++.+|+|.++|
T Consensus 254 g~~vL~V~~L~v~~~--~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~ 331 (501)
T COG3845 254 GEVVLEVEDLSVKDR--RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331 (501)
T ss_pred CCeEEEEeeeEeecC--CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHH
Confidence 345677888776533 234689999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEecCC----cCCCCCHHHHhhcCCCC----------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCCCC
Q 000671 659 ---SIAYVSQTS----WIQSGSIRDNILYGKPM----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1361)
Q Consensus 659 ---~iayv~Q~~----~i~~~ti~eni~~g~~~----------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 721 (1361)
.+||||.+. .....|+.||+.++.-. +...+++..+ .+-+.++--+.+.. .+..+||
T Consensus 332 r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~--~li~~fdVr~~~~~----~~a~~LS 405 (501)
T COG3845 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR--ELIEEFDVRAPSPD----APARSLS 405 (501)
T ss_pred HhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH--HHHHHcCccCCCCC----cchhhcC
Confidence 279999985 46789999999876422 2222222211 12222222223322 4567899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEccCchHHh-hcCeEEEEeCCeEEEec
Q 000671 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1361)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g 800 (1361)
||++||+-+||-+..+|++++...||-|||....+.|.+.++....+|+.|++++-+++++- -||+|.||.+|+|+...
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~ 485 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccc
Confidence 99999999999999999999999999999999999999999888889999999999999865 48999999999999776
Q ss_pred ChHH
Q 000671 801 NYQE 804 (1361)
Q Consensus 801 ~~~~ 804 (1361)
++++
T Consensus 486 ~~~~ 489 (501)
T COG3845 486 PPEE 489 (501)
T ss_pred cccc
Confidence 6554
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-19 Score=202.83 Aligned_cols=137 Identities=25% Similarity=0.287 Sum_probs=111.0
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
++++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+..++|+++++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 359999999999999999999999999999999999999999999999999999888889999999
Q ss_pred ecCcccccc-cchhhhcCCC---CCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1296 IPQEPTLFR-GSVRTNLDPL---GLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1296 IpQdp~LF~-GTIR~NLdP~---~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+||+|.+|. .|+++|+... ...+ ++++.++++..+-... ...-.+.-++|.||||+|.
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~------~~~~~~~~~LS~G~~qrv~ 145 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA------EFADRYPHELSGGQQQRVG 145 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH------HHHhcChhhCCHHHHHHHH
Confidence 999999996 6999999521 1112 3456677777643210 0112334679999999974
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-19 Score=198.21 Aligned_cols=135 Identities=21% Similarity=0.258 Sum_probs=107.5
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHH---Hhhc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LRVK 1292 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~---LR~~ 1292 (1361)
|+++||+++|+++ ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.++ +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 35999999999999999999999999999999999999999999999999999877554 6889
Q ss_pred CceecCccccc-ccchhhhcCCC---CCCCHH----HHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1293 LSIIPQEPTLF-RGSVRTNLDPL---GLYSDD----EIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1293 isiIpQdp~LF-~GTIR~NLdP~---~~~sDe----eI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++++||+|.+| ..|+++|+.-. ...+++ ++.++++..+-.. . .|. +.-.+|.||||+|.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~--~~~----~~~~LS~G~~qrv~ 147 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD--K--AKN----FPIQLSGGEQQRVG 147 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh--h--hhC----CchhCCHHHHHHHH
Confidence 99999999874 67999999621 123333 3556666653211 1 122 23579999999975
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-19 Score=200.41 Aligned_cols=135 Identities=27% Similarity=0.427 Sum_probs=106.3
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHH-hhcCc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-RVKLS 1294 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~L-R~~is 1294 (1361)
|+++||+++|+. . ++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..++ |++++
T Consensus 1 l~~~~l~~~~~~-~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK-S-QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC-e-eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 579999999963 3 59999999999999999999999999999999999999999999999999998887665 67899
Q ss_pred eecCccccccc-chhhhcCCCCC-C----CHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1295 IIPQEPTLFRG-SVRTNLDPLGL-Y----SDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1295 iIpQdp~LF~G-TIR~NLdP~~~-~----sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++||+|.+|.+ |+++|+..... + ..+++.++++..++ .+.. .| ...-.+|.||||+|.
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-l~~~--~~----~~~~~LS~G~~qrv~ 142 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPR-LKER--RK----QLAGTLSGGEQQMLA 142 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHh-hhhh--hh----CchhhCCHHHHHHHH
Confidence 99999999997 99999953211 1 12234445555421 1111 12 234469999999975
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-19 Score=206.59 Aligned_cols=136 Identities=26% Similarity=0.402 Sum_probs=109.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCC--CCChHHHhhc
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC--SMGLKDLRVK 1292 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~--~i~l~~LR~~ 1292 (1361)
-|+++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+. ..+..++|++
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 59999999999633 35999999999999999999999999999999999999999999999999994 4556788999
Q ss_pred CceecCcc--cccccchhhhcCCC---CCCCHH----HHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1293 LSIIPQEP--TLFRGSVRTNLDPL---GLYSDD----EIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1293 isiIpQdp--~LF~GTIR~NLdP~---~~~sDe----eI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++++||+| .+|+.|+++|+... ...+.+ .+.++++..+- +...-.+.-++|.||||++.
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL--------~~~~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGI--------EHLKDKPTHCLSFGQKKRVA 151 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC--------hhhhhCCcccCCHHHHHHHH
Confidence 99999999 67899999999521 123333 34555565532 11223456789999999875
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-19 Score=191.98 Aligned_cols=94 Identities=36% Similarity=0.658 Sum_probs=87.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
++++|++++|.. . ++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+ .++|+++++
T Consensus 1 l~~~~l~~~~~~-~-~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK-K-TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC-e-eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 478999999963 3 4999999999999999999999999999999999999999999999999998876 678899999
Q ss_pred ecCccccccc-chhhhcC
Q 000671 1296 IPQEPTLFRG-SVRTNLD 1312 (1361)
Q Consensus 1296 IpQdp~LF~G-TIR~NLd 1312 (1361)
+||+|.+|.+ |+++|+.
T Consensus 78 ~~q~~~~~~~~tv~~~~~ 95 (173)
T cd03230 78 LPEEPSLYENLTVRENLK 95 (173)
T ss_pred EecCCccccCCcHHHHhh
Confidence 9999999987 9999984
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-19 Score=198.93 Aligned_cols=132 Identities=24% Similarity=0.301 Sum_probs=105.2
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCce
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
++++|++++|.+ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+++.+ ..|+++++
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 478999999964 35999999999999999999999999999999999999999999999999998754 35788999
Q ss_pred ecCcccccc-cchhhhcCCC---CCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1296 IPQEPTLFR-GSVRTNLDPL---GLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1296 IpQdp~LF~-GTIR~NLdP~---~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+||+|.+|. .|+++|+.-. ...+ ++++.++++..+-. .. .| ...-.+|.||||+|.
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~----~~~~~LSgG~~qrl~ 140 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE--GL--LN----RYPHELSGGQQQRVA 140 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh--hh--hh----cChhhCCHHHHHHHH
Confidence 999999986 5999999521 1112 34566777766321 11 12 223579999999975
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-19 Score=198.15 Aligned_cols=136 Identities=22% Similarity=0.270 Sum_probs=111.8
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHHhhcCc
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1215 ~I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
.|+++||+++|.. . ++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+++...+|++++
T Consensus 7 ~i~~~~l~~~~~~-~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD-A-KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC-c-eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999953 3 4999999999999999999999999999999999999999999999999999999888999999
Q ss_pred eecCcccccccchhhhcCC----CCC-CCHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1295 IIPQEPTLFRGSVRTNLDP----LGL-YSDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1295 iIpQdp~LF~GTIR~NLdP----~~~-~sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++||+|.+|+.|+++|+.- .+. ..++++.++++..+-.. +. .|. ..-.+|.||||+|.
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~--~~~----~~~~LS~G~~qrv~ 147 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD-TI--LTK----NIAELSGGEKQRIS 147 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh-HH--hcC----CcccCCHHHHHHHH
Confidence 9999999999999999952 111 12445667777764310 11 122 23468899999874
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-19 Score=200.79 Aligned_cols=136 Identities=26% Similarity=0.387 Sum_probs=108.5
Q ss_pred EEEEEEEEEeCCC--CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHH---Hh
Q 000671 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LR 1290 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~--~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~---LR 1290 (1361)
|+++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+..+ +|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 125999999999999999999999999999999999999999999999999998876543 58
Q ss_pred hcCceecCcccccc-cchhhhcCC---CCCCC----HHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1291 VKLSIIPQEPTLFR-GSVRTNLDP---LGLYS----DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1291 ~~isiIpQdp~LF~-GTIR~NLdP---~~~~s----DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
++++++||+|.+|. .|+++|+.. ....+ ++++.++++..+-. +.+ |. ..-.+|.||||+|.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~--~~----~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE--DKA--DA----YPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hhh--hc----ChhhCCHHHHHHHH
Confidence 89999999999997 599999952 11122 44677777776321 111 11 23468999999875
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-19 Score=191.33 Aligned_cols=96 Identities=35% Similarity=0.597 Sum_probs=88.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCC--hHHHhhcC
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG--LKDLRVKL 1293 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~--l~~LR~~i 1293 (1361)
|+++|++++|.+ .++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+++ ....|+.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 579999999953 35999999999999999999999999999999999999999999999999999886 67788999
Q ss_pred ceecCccccccc-chhhhcCC
Q 000671 1294 SIIPQEPTLFRG-SVRTNLDP 1313 (1361)
Q Consensus 1294 siIpQdp~LF~G-TIR~NLdP 1313 (1361)
+++||+|.+|.+ |+++|+..
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred EEEecCCccCCCCCHHHheee
Confidence 999999999975 99999964
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-19 Score=210.91 Aligned_cols=136 Identities=25% Similarity=0.337 Sum_probs=109.1
Q ss_pred EEEEEEEEEeCC--CCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHH---Hh
Q 000671 1216 IELRQLKIRYRP--NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LR 1290 (1361)
Q Consensus 1216 I~f~nVs~~Y~~--~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~---LR 1290 (1361)
|+++||+++|+. +..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999962 1245999999999999999999999999999999999999999999999999999887654 47
Q ss_pred hcCceecCcccccc-cchhhhcCCC---CCCCH----HHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccccee
Q 000671 1291 VKLSIIPQEPTLFR-GSVRTNLDPL---GLYSD----DEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVT 1359 (1361)
Q Consensus 1291 ~~isiIpQdp~LF~-GTIR~NLdP~---~~~sD----eeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1359 (1361)
+++++|||+|.+|. .|+++|+.-. ...++ +++.++++..+-. .. .|. ..-.+|.||||+|.
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~--~~~----~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS--DK--ADR----YPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hh--hhC----ChhhCCHHHHHHHH
Confidence 89999999999997 6999999521 11232 3566677766321 11 122 23579999999985
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-19 Score=200.60 Aligned_cols=134 Identities=22% Similarity=0.287 Sum_probs=106.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEcCeeCCCCChHHH-hhcCc
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-RVKLS 1294 (1361)
Q Consensus 1216 I~f~nVs~~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~~L~R~~ep~~G~I~IDGvDI~~i~l~~L-R~~is 1294 (1361)
++++|++++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999963 359999999999999999999999999999999999999999999999999998887665 57799
Q ss_pred eecCccccccc-chhhhcCCC----CCC-------------CHHHHHHHHhhCcCCCCCCcccccCCchhhhhhcccccc
Q 000671 1295 IIPQEPTLFRG-SVRTNLDPL----GLY-------------SDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQ 1356 (1361)
Q Consensus 1295 iIpQdp~LF~G-TIR~NLdP~----~~~-------------sDeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1356 (1361)
++||+|.+|.+ |+++||... ... .++++.++++..+- +..-......+|.||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--------~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL--------ADLADRPAGELSYGQQR 150 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc--------cchhhCChhhCCHHHHH
Confidence 99999999997 999998521 110 12235556665532 11112334579999999
Q ss_pred cee
Q 000671 1357 LVT 1359 (1361)
Q Consensus 1357 ~~~ 1359 (1361)
+|.
T Consensus 151 rv~ 153 (236)
T cd03219 151 RLE 153 (236)
T ss_pred HHH
Confidence 975
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1361 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 5e-57 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 8e-46 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-45 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 3e-45 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 3e-45 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 3e-45 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-45 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-44 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-44 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 3e-44 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 5e-44 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 3e-43 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-43 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-41 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-37 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-05 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 6e-28 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-05 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-24 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-24 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-22 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-22 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-05 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-22 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-05 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-21 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 6e-14 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-21 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 5e-14 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-21 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-10 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 7e-20 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-19 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-19 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-19 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-19 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-19 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 5e-19 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 8e-19 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-18 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 9e-10 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-18 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-18 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-17 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-16 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-15 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 4e-14 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-13 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-13 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 3e-13 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 5e-13 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-12 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-12 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-12 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-11 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-11 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-11 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 7e-11 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 9e-11 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-10 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-10 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-10 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-10 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 5e-10 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 6e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 6e-09 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 7e-09 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-08 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-08 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 6e-08 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 8e-08 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 8e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 3e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 6e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-07 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 3e-07 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 5e-07 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 8e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 8e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 9e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-06 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 2e-06 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 2e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-06 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 3e-06 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 8e-06 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 2e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-05 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 2e-04 | ||
| 3uwx_A | 972 | Crystal Structure Of Uvra-Uvrb Complex Length = 972 | 3e-04 | ||
| 3ux8_A | 670 | Crystal Structure Of Uvra Length = 670 | 3e-04 | ||
| 2r6f_A | 972 | Crystal Structure Of Bacillus Stearothermophilus Uv | 3e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 3e-04 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 7e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972 | Back alignment and structure |
|
| >pdb|3UX8|A Chain A, Crystal Structure Of Uvra Length = 670 | Back alignment and structure |
|
| >pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1361 | |||
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-132 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-15 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-127 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-14 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-127 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-12 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 9e-86 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 7e-45 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-32 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 9e-65 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-27 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-51 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-44 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-51 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-46 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-48 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 8e-45 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 6e-43 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 4e-31 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 1e-42 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-42 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-41 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 4e-22 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-41 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 7e-26 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 2e-39 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 2e-25 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-38 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 4e-31 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 2e-38 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 4e-38 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 4e-38 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 4e-26 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-28 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 8e-11 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-28 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-09 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 3e-27 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 4e-10 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-24 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-17 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-08 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-04 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-22 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-22 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-17 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-08 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 7e-04 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-21 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-17 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-08 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-04 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-21 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-16 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-09 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-05 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-18 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-13 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 9e-18 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-07 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 6e-05 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-17 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 7e-13 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 4e-17 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-11 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 4e-17 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 6e-17 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 4e-05 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 3e-16 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 3e-07 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-15 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 6e-15 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 3e-04 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-14 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-10 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-14 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-14 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 4e-14 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-08 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-13 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 9e-13 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 8e-09 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 1e-12 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 3e-12 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 3e-12 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 7e-12 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 5e-09 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 6e-10 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 7e-10 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 7e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 1e-07 | |
| 3lvg_D | 190 | LCB, clathrin light chain B; SELF assembly, coated | 2e-05 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 5e-05 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 6e-04 |
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 406 bits (1046), Expect = e-132
Identities = 96/259 (37%), Positives = 137/259 (52%), Gaps = 1/259 (0%)
Query: 561 QVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620
+V + + AF + + + + S +FS L P L+ +N I
Sbjct: 2 TTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKI 61
Query: 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILY 680
+ Q +AV GS GAGK+SLL I+GE+ G + G I++ SQ SWI G+I++NI+
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII- 120
Query: 681 GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740
G D+ RY IKAC L++DI+ F D +G+ G+ LSGGQ+ RI LARAVY DAD+
Sbjct: 121 GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180
Query: 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
YL D PF +D T +F CV + KT ILVT ++E L + D+IL+L G G
Sbjct: 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG 240
Query: 801 NYQELLLAGTAFEQLVNAH 819
+ EL F +
Sbjct: 241 TFSELQNLRPDFSSKLMGC 259
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 1e-15
Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 19/131 (14%)
Query: 1182 ISVERIKQFM--HIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCT 1239
+ +E + F ++ + + + P VLK I
Sbjct: 5 VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINFK 60
Query: 1240 FSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQE 1299
G + V G TG+GKT+L+ + +EP+ G I G ++S Q
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQN 107
Query: 1300 PTLFRGSVRTN 1310
+ G+++ N
Sbjct: 108 SWIMPGTIKEN 118
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 391 bits (1008), Expect = e-127
Identities = 91/228 (39%), Positives = 129/228 (56%), Gaps = 1/228 (0%)
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650
+ V ++ W+ P L+ +N I+ Q +AV GS GAGK+SLL I+GE+
Sbjct: 3 TTTEVVMENVTAFWEEGGT-PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61
Query: 651 SGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
G + G I++ SQ SWI G+I++NI++G D+ RY IKAC L++DI+ F D
Sbjct: 62 EGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDN 121
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
+G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF +D T +F CV + K
Sbjct: 122 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 181
Query: 771 TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
T ILVT ++E L + D+IL+L G G + EL F +
Sbjct: 182 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMG 229
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
+ + + + VLK I G + V G TG+GKT+L+ + +EP+ G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTN 1310
I G ++S Q + G+++ N
Sbjct: 64 KIKHSG-------------RISFCSQFSWIMPGTIKEN 88
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 392 bits (1009), Expect = e-127
Identities = 109/228 (47%), Positives = 151/228 (66%), Gaps = 3/228 (1%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
S+ ++ F+W PTL G+ I +AV G VG GKSSLL A+L E+ K+ G
Sbjct: 3 SITVRNATFTWARSDP-PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 654 VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
V + GS+AYV Q +WIQ+ S+R+NIL+G +++ Y I+ACAL D+ GD TEI
Sbjct: 62 VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI 121
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV--MAALEKKT 771
G++G+NLSGGQKQR+ LARAVY++ADIYLFDDP SAVDAH +F + L+ KT
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKT 181
Query: 772 VILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819
ILVTH + +L +VD I+V+ GG+I++ G+YQELL AF + + +
Sbjct: 182 RILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTY 229
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
I +R + + P L GIT + EG V VVG+ G GK++L+SAL ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTN 1310
+ I G ++ +PQ+ + S+R N
Sbjct: 62 VAIKG-------------SVAYVPQQAWIQNDSLREN 85
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 305 bits (784), Expect = 9e-86
Identities = 200/1078 (18%), Positives = 404/1078 (37%), Gaps = 136/1078 (12%)
Query: 326 ITKVVESFTQRHCF-FGSRRSGMRMRSALMVAVYQKQLKLSSLGRK------KHSTGEIV 378
++ ++ Q + + R ++R ++ + H GE+
Sbjct: 119 AGVLIVAYIQVSFWCLAAGRQIHKIRQKF----------FHAIMNQEIGWFDVHDVGELN 168
Query: 379 NYIAVDAYR----MGEFPFWFHLTWSLALQLFLAIGVLFGV-------VGLGALPGLVLF 427
+ D + +G+ + Q F + + L L +
Sbjct: 169 TRLTDDVSKINEGIGD-------KIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVL 221
Query: 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKF-----KSLI 482
+ + +AKIL + + A + E+L ++ + ++K +L
Sbjct: 222 GLSAGI---WAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLE 278
Query: 483 ESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATL 542
E++R K ++ A +IY + + G +L S + + TV ++
Sbjct: 279 EAKRLGIKKAITANISMGAAFLLIYAS----YALAFWYGTSLVISKEYSIGQVLTVFFSV 334
Query: 543 RSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH--ELNNDDVRRISLQKSDRSVKIQEG 600
V + + + + ++D+ +++ +++ +
Sbjct: 335 LIGAFSVGQASPNIEAFANARGAAYEVFK-IIDNKPSIDSFSKSGHKPDNIQGNLEFKNI 393
Query: 601 NFSWD--PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTV 654
+FS+ E + L+G+NL +K Q +A+ G+ G GKS+ + + + + G V
Sbjct: 394 HFSYPSRKE--VQILKGLNLKVKSGQTVALVGNSGCGKST----TVQLMQRLYDPLDGMV 447
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACAL--- 698
++ G I VSQ + + +I +NI YG+ D+ KA
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE--DVTMDEIEKAVKEANA 505
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
I H T +G+RG LSGGQKQRI +ARA+ + I L D+ SA+D + A
Sbjct: 506 YDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV- 564
Query: 759 FNECVMAALEK----KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814
V AAL+K +T I++ H++ + D I +GG I + GN+ EL+ + +
Sbjct: 565 ----VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFK 620
Query: 815 LVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLT 874
LV L N ++++ + + + + R+ + + +
Sbjct: 621 LVMTQT--AGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKL 678
Query: 875 EDEEMEIGDVGWKPFMDYLNVSKG-MSLLCLGVLAQSGFVGLQAAATYWLAYAIQI---- 929
+E DV F L ++ +G+ GLQ A + + + +
Sbjct: 679 STKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNG 738
Query: 930 -----PKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPML 984
+ S + ++ + S + + + F G +K S+ + +
Sbjct: 739 GPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVS 798
Query: 985 FFDST--PVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAI 1042
+FD G + TRL++D + + + + + L I I WQ+ ++ +
Sbjct: 799 WFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLL 858
Query: 1043 FA---MVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN 1099
+ V+ ++ + E + T+ + +F
Sbjct: 859 AIVPIIAIAGVVEMKMLSGQALKDK---KELEGSGKIATEAIENFRTVVSLTREQKFETM 915
Query: 1100 YLKLVDI---DASLFFHTNGVMEWLILRVEALQNLTLFTAALFL----VLIPRGYVAPG- 1151
Y + + I +A H G+ Q + F+ A L+ + +
Sbjct: 916 YAQSLQIPYRNAMKKAHVFGIT------FSFTQAMMYFSYAAAFRFGAYLVTQQLMTFEN 969
Query: 1152 --LVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSS 1209
LV ++ + G +S + A +S I + + PE + P+
Sbjct: 970 VLLVFSAIVFGAMAVGQ---VSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNM 1026
Query: 1210 WPFKGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV 1267
+G ++ + Y RP+ P VL+G++ +G + +VG +G GK+T++ L R
Sbjct: 1027 --LEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083
Query: 1268 EPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL---DPLGLYSDDEI 1322
+P GS+ +DG +I + ++ LR +L I+ QEP LF S+ N+ D + S +EI
Sbjct: 1084 DPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEI 1141
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 7e-45
Identities = 109/543 (20%), Positives = 226/543 (41%), Gaps = 75/543 (13%)
Query: 323 CLIITKVVESFTQRHCFFG--SRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNY 380
L I + F Q FG R+R + ++ ++ + S K++TG +
Sbjct: 757 ILGIISFITFFLQ-GFTFGKAGEILTKRLRYMVFKSMLRQDV--SWFDDPKNTTGALTTR 813
Query: 381 IAVDAYRMGEFPFWFHLTWSLALQ----LFLAIGVLF------GVVGLGALPGLVLFLIC 430
+A DA ++ ++ Q L I + ++ L +P + I
Sbjct: 814 LANDAAQVKGA---TGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVP---IIAIA 867
Query: 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEF 490
G++ K+L + + + +E + N + + + E+KF+++ + +
Sbjct: 868 GVV---EMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPY 924
Query: 491 KWLSEAQLRKAYGTVIYWMSPTIISSVIFL----GCALTGSAPLNASTIFTVLATL---- 542
+ A + + + + ++ G L + + V + +
Sbjct: 925 R---NAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGA 981
Query: 543 RSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH--ELNNDDVRRISLQKSDRSVKIQEG 600
++G+ P+ + VS I +++ E+++ + + + +V+
Sbjct: 982 MAVGQVSSFAPD----YAKATVSASHIIR-IIEKTPEIDSYSTQGLKPNMLEGNVQFSGV 1036
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISG- 652
F++ +IP L+G++L++K Q +A+ GS G GKS+++ + G + + G
Sbjct: 1037 VFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV-FLDGK 1095
Query: 653 ---TVNLY---GSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACAL---DKDIN 703
+N+ + VSQ + SI +NI YG Y++ ++A + I+
Sbjct: 1096 EIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID 1155
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ T +G +G LSGGQKQRI +ARA+ I L D+ SA+D + V
Sbjct: 1156 SLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKV-----V 1210
Query: 764 MAALEK----KTVILVTHQVEFLSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
AL+K +T I++ H+ LS + D I+V++ G++ + G +Q+LL + +V
Sbjct: 1211 QEALDKAREGRTCIVIAHR---LSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMV 1267
Query: 817 NAH 819
+
Sbjct: 1268 SVQ 1270
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 3e-32
Identities = 72/381 (18%), Positives = 136/381 (35%), Gaps = 20/381 (5%)
Query: 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSS 1000
Y G+ + Y + F + F ++I + +FD VG + TRL+
Sbjct: 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTD 173
Query: 1001 DLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAR 1060
D+S ++ I I + I W++ +V + + +
Sbjct: 174 DVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILS 233
Query: 1061 ELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120
A E + T+ AF + + Y ++ L
Sbjct: 234 SFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITAN- 292
Query: 1121 LILRVEALQNLTLFTAALFL----VLIPRGYVAPGLVGLSLSY----AFTLTGTQVFLSR 1172
+ + A L + AL L+ + G V AF++ +
Sbjct: 293 --ISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE- 349
Query: 1173 WYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRY--RPNAP 1230
AN + + + + P + + P + +G +E + + Y R
Sbjct: 350 ---AFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDN--IQGNLEFKNIHFSYPSRKEVQ 404
Query: 1231 LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290
+LKG+ G V +VG +G GK+T + + RL +P G + IDG DI ++ ++ LR
Sbjct: 405 -ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463
Query: 1291 VKLSIIPQEPTLFRGSVRTNL 1311
+ ++ QEP LF ++ N+
Sbjct: 464 EIIGVVSQEPVLFATTIAENI 484
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 9e-65
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 1199 AIVE--DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGK 1256
+++E + WP G++ ++ L +Y +L+ I+ + S G RVG++GRTGSGK
Sbjct: 1 SLIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGK 60
Query: 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL 1316
+TL+SA RL+ G I IDGV S+ L+ R +IPQ+ +F G+ R NLDP
Sbjct: 61 STLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAA 119
Query: 1317 YSDDEIWKV 1325
+SD EIWKV
Sbjct: 120 HSDQEIWKV 128
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-27
Identities = 67/316 (21%), Positives = 111/316 (35%), Gaps = 39/316 (12%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
+ +++ + L ++ I Q++ + G G+GKS+LL A L + G
Sbjct: 19 QMTVKDLTAKYTEGGN-AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-LLNTEGE 76
Query: 654 V-------------NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDK---ARYDKAIKACA 697
+ + + Q +I SG+ R N+ P K
Sbjct: 77 IQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL---DPNAAHSDQEIWKVADEVG 133
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
L I F + G LS G KQ + LAR+V + A I L D+P + +D T
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ- 192
Query: 758 LFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL-AGTAFEQLV 816
+ + A TVIL ++E + E D+ LV+E ++ Q + EL F
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 817 NAH--------------RDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPR--KES 860
D + P+ N Q + GI P S
Sbjct: 253 IGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPS 312
Query: 861 SEGEISVKGLTQLTED 876
++ ++G Q+ E
Sbjct: 313 DIADVILEGEVQVVEQ 328
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 2e-51
Identities = 122/579 (21%), Positives = 241/579 (41%), Gaps = 60/579 (10%)
Query: 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVN--YSNRGEENLQEGLSIVGCLIITKVVES 332
Y + I ++ A LL ++ + N L+ ++ L+ + +
Sbjct: 23 YKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSG 82
Query: 333 FTQRHCFFG-SRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEF 391
F +C S M+MR L + + + + STG +++ I D+ ++
Sbjct: 83 FASSYCLSWVSGNVVMQMRRRL----FNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGA 138
Query: 392 PFWFHLTWSL------ALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQ 445
+ +L + + ++F +L +V+ + +K +K
Sbjct: 139 -----TSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKIS 193
Query: 446 SEFMIAQDERLRSTSEILNNMKIIKL---QSWE-EKFKSLIESRREKEFKWLSEAQLRKA 501
A S ++L K++ Q E ++F + S R++ K +
Sbjct: 194 RNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMK---LVSAQSI 250
Query: 502 YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQ 561
VI ++ + +V+FL + A L T V + + + P++ + S +
Sbjct: 251 ADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQR 310
Query: 562 VKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIK 621
+ + L+D E D+ + ++ + V +++ F++ + P L V+ I
Sbjct: 311 GMAACQTLFG-LMDLETERDN-GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIP 367
Query: 622 WAQKIAVCGSVGAGKSSLL------YAIL-GEIPKISGT-------VNLYGSIAYVSQTS 667
+ +A+ G G+GKS++ Y + G I + G NL A VSQ
Sbjct: 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI-CLDGHDVRDYKLTNLRRHFALVSQNV 426
Query: 668 WIQSGSIRDNILYGKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725
+ + +I +NI Y + + + ++A + + I N G T IG+ G +LSGGQ+
Sbjct: 427 HLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVILVTHQVEF 781
QR+ +ARA+ DA + + D+ SA+D + + AAL++ KTV+++ H+
Sbjct: 487 QRVAIARALLRDAPVLILDEATSALDTESERA-----IQAALDELQKNKTVLVIAHR--- 538
Query: 782 LSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
LS + D ILV++ G+I + G + +LL A+ QL
Sbjct: 539 LSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHR 577
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 170 bits (434), Expect = 1e-44
Identities = 77/450 (17%), Positives = 164/450 (36%), Gaps = 49/450 (10%)
Query: 901 LLCLGVLAQSGFVGLQAAATYWLAYAI---------QIPKITSGILIGVYAGVSTASAVF 951
L + +A L + +I +++G+ +
Sbjct: 26 GLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMF----VRGLS 81
Query: 952 VYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPF 1011
+ S+ + + N P+ FFD G +L+R++ D +
Sbjct: 82 GFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSR 141
Query: 1012 SIVFVAASGTELLAIIGIMTFVTWQ----VLVVAIFAMVAVRFVQRYYIATARELIRING 1067
++V + G ++ ++ +M + +WQ ++VVA A+ FV + + +R + G
Sbjct: 142 ALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMG 201
Query: 1068 TTKAPVMNYTAETSQGVVTIRAFNM-----------VDRFFQNYLKLVDIDASLFFHTNG 1116
V + + +G + ++ + Q +KLV +
Sbjct: 202 H----VTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIAD----P 253
Query: 1117 VMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176
V++ + +L + A + R + PG + S F L L+
Sbjct: 254 VIQMIA----SLALFAVLFLASVDSI--RAELTPGTFTVVFSAMFGLMRPLKALTSVTSE 307
Query: 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGI 1236
+ + + + M + E K G ++++ + Y+ L +
Sbjct: 308 FQRGMAACQTLFGLMDLETE---RDNGKYEAE--RVNGEVDVKDVTFTYQGKEKPALSHV 362
Query: 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
+ + +G V +VGR+GSGK+T+ + R + GSI +DG D+ L +LR +++
Sbjct: 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALV 422
Query: 1297 PQEPTLFRGSVRTN--LDPLGLYSDDEIWK 1324
Q LF ++ N G Y+ ++I +
Sbjct: 423 SQNVHLFNDTIANNIAYAAEGEYTREQIEQ 452
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 4e-51
Identities = 120/579 (20%), Positives = 248/579 (42%), Gaps = 60/579 (10%)
Query: 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVN--YSNRGEENLQEGLSIVGCLIITKVVES 332
+ I I +L + LL ++ + L +V L+I + + S
Sbjct: 23 FKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITS 82
Query: 333 FTQRHCFFG-SRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEF 391
+ +C S + M MR L + + + K STG +++ I D+ ++
Sbjct: 83 YISSYCISWVSGKVVMTMRRRL----FGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASS 138
Query: 392 PFWFHLTWSLAL---QLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEF 448
+ +L + IG+ + ++L ++ ++++ + ++ +S
Sbjct: 139 -----SSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSIS 193
Query: 449 MIAQDERLRSTS---EILNNMKIIKL---QSWE-EKFKSLIESRREKEFKWLSEAQLRKA 501
Q+ + T+ ++L K + + Q E ++F + R + K
Sbjct: 194 KNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMK---MVSASSI 250
Query: 502 YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQ 561
+I ++ ++ V++ + L A TI V +++ ++ P++ + + +
Sbjct: 251 SDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310
Query: 562 VKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIK 621
+ + A +LD E D+ +R + ++ ++ + F++ +P LR +NL I
Sbjct: 311 GMAACQTLFA-ILDSEQEKDEGKR-VIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIP 367
Query: 622 WAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGT-------VNLYGSIAYVSQTS 667
+ +A+ G G+GKS++ I G I + G +L +A VSQ
Sbjct: 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHI-LMDGHDLREYTLASLRNQVALVSQNV 426
Query: 668 WIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725
+ + ++ +NI Y + + + ++A + IN D+G T IG+ G+ LSGGQ+
Sbjct: 427 HLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR 486
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVILVTHQVEF 781
QRI +ARA+ D+ I + D+ SA+D + + AAL++ +T +++ H+
Sbjct: 487 QRIAIARALLRDSPILILDEATSALDTESERA-----IQAALDELQKNRTSLVIAHR--- 538
Query: 782 LSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
LS + D I+V+E G I + G + ELL + QL
Sbjct: 539 LSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 577
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 2e-46
Identities = 80/450 (17%), Positives = 160/450 (35%), Gaps = 49/450 (10%)
Query: 901 LLCLGVLAQSGFVGLQAAATYWLAYAI---------QIPKITSGILIGVYAGVSTASAVF 951
L + +A L + + ++IG+ +
Sbjct: 26 GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMI----LRGIT 81
Query: 952 VYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPF 1011
Y S+ + + K + P+ FFD G +L+R++ D +
Sbjct: 82 SYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSG 141
Query: 1012 SIVFVAASGTELLAIIGIMTFVTWQ----VLVVAIFAMVAVRFVQRYYIATARELIRING 1067
+++ V G ++ + +M + +WQ ++V+A +A+R V + + R + +
Sbjct: 142 ALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF----RSISKNMQ 197
Query: 1068 TTKAPVMNYTAETSQGVVTIRAFNM-----------VDRFFQNYLKLVDIDASLFFHTNG 1116
T V + +G + F ++ +K+V +
Sbjct: 198 NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISD----P 253
Query: 1117 VMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176
+++ + +L + AA F + + G + + S L L+
Sbjct: 254 IIQLIA----SLALAFVLYAASFPSV--MDSLTAGTITVVFSSMIALMRPLKSLTNVNAQ 307
Query: 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGI 1236
+ + + + + E E KR G +E R + Y L+ I
Sbjct: 308 FQRGMAACQTLFAILDSEQE---KDEGKRVID--RATGDLEFRNVTFTYPGREVPALRNI 362
Query: 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
G V +VGR+GSGK+T+ S + R + G IL+DG D+ L LR +++++
Sbjct: 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALV 422
Query: 1297 PQEPTLFRGSVRTN--LDPLGLYSDDEIWK 1324
Q LF +V N YS ++I +
Sbjct: 423 SQNVHLFNDTVANNIAYARTEEYSREQIEE 452
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 2e-48
Identities = 118/587 (20%), Positives = 227/587 (38%), Gaps = 66/587 (11%)
Query: 275 YLKENIFIAICALLRTIAVVVGPLLL-----YAFVNYSNRGEENLQEGLSIVGC-LIITK 328
Y I +++ ++ PLL+ N++ +E + +G L I
Sbjct: 12 YKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFV 71
Query: 329 VVESFTQR-HCFFGSR---RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVD 384
+V + + + +R L Y LS+ + G++++ + D
Sbjct: 72 IVRPPIEFIRQYLAQWTSNKILYDIRKKL----YNHLQALSARFYANNQVGQVISRVIND 127
Query: 385 AYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVG----LGALPGLVLFLICGLLNVPFAKI 440
+ +F + L + ++L + + L L I +
Sbjct: 128 VEQTKDF-----ILTGL-MNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 441 LQKCQSEFMIAQDERLRSTS---EILNNMKIIKLQSWE----EKFKSLIESRREKEFKWL 493
+ + E + + ++K + E + F + + L
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTR---AL 238
Query: 494 SEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIP 553
+ I ++ VI +G L S + T+ + L + P+R +
Sbjct: 239 KHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLV 298
Query: 554 EALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTL 613
+ + + Q S DR+ + + + V ++ + I +F ++ P L
Sbjct: 299 ASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPIL 357
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGT-------VNLYGS 659
+ +NL I+ + +A G G GKS+L+ I G+I I G +L
Sbjct: 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI-LIDGHNIKDFLTGSLRNQ 416
Query: 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
I V Q + + S ++++NIL G+P +A K I N G TE+G+RG+
Sbjct: 417 IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV 476
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVIL 774
LSGGQKQR+ +AR N+ I + D+ SA+D + + + AL+ +T ++
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI-----IQEALDVLSKDRTTLI 531
Query: 775 VTHQVEFLS---EVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
V H+ LS D+I+V+E G I ++G ++EL+ A+E L +
Sbjct: 532 VAHR---LSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI 575
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 8e-45
Identities = 75/437 (17%), Positives = 155/437 (35%), Gaps = 36/437 (8%)
Query: 902 LCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAH 961
L + + + L + R + A
Sbjct: 35 LLIKYAIDGVINNHALTTDEKVHHLT---IAIGIALFIFVI----VRPPIEFIRQYLAQW 87
Query: 962 LGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGT 1021
K N + F+ + VG++++R+ +D+ I ++ +
Sbjct: 88 TSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCI 147
Query: 1022 ELLAIIGIMTFVTWQ----VLVVAIFAMVAVRFV----QRYYIATARELIRINGTTKAPV 1073
++ + IM F+ + L + F ++ V ++ ++ L + G
Sbjct: 148 TIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQG------ 201
Query: 1074 MNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL 1133
+ E QG+ +++F + D +N+ K + + + + ++
Sbjct: 202 --FLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGP 259
Query: 1134 FTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH 1192
L G + G + + Y L G L + L S++R+ Q +
Sbjct: 260 IIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319
Query: 1193 IPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRT 1252
+ I +GRI++ + +Y N +LK I + +G V VG +
Sbjct: 320 EDYD---IKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMS 376
Query: 1253 GSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD 1312
G GK+TLI+ + R + G ILIDG +I LR ++ ++ Q+ LF +V+ N+
Sbjct: 377 GGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI- 435
Query: 1313 PLGLY-----SDDEIWK 1324
L +D+E+ +
Sbjct: 436 ---LLGRPTATDEEVVE 449
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 6e-43
Identities = 98/452 (21%), Positives = 183/452 (40%), Gaps = 85/452 (18%)
Query: 395 FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDE 454
+ L+ L I + + G LF + +Q+ + DE
Sbjct: 159 VSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLF-----------RKIQE-------STDE 200
Query: 455 RLRSTSEILNNMKIIKLQSWEEKFKSLIESRR-EKEFKWLSEAQLRKAYGTVIYWMSPTI 513
R E L +++++ EE E+ K + L + + ++I + P
Sbjct: 201 VNRVVRENLLGVRVVRAFRREEY-----ENENFRKANESLRRSIIS--AFSLIVFALPLF 253
Query: 514 -------ISSVIFLGCALTGSAPLNASTI-------FTVLATLRSMGEPVRMIPEALSIM 559
+ +V++ G L + + +I ++ +L +G + I A
Sbjct: 254 IFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRA---- 309
Query: 560 IQVKVSFDRINAFLLDHELN-NDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNL 618
S R+ +L+ + + ++L + SV + F + E P L GVN
Sbjct: 310 ---SASAKRVLE-VLNEKPAIEEADNALALPNVEGSVSFENVEFRY-FENTDPVLSGVNF 364
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGT-------VNLYGSIAYVS 664
+K +AV G G+GKS+L+ I G + ++ +L G I+ V
Sbjct: 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV-EVDELDVRTVKLKDLRGHISAVP 423
Query: 665 QTSWIQSGSIRDNILYGKP------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
Q + + SG+I++N+ +G+ + +A A A D I + G + + + G
Sbjct: 424 QETVLFSGTIKENLKWGREDATDDEIVEA----AKIAQIHDF-IISLPEGYDSRVERGGR 478
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK----TVIL 774
N SGGQKQR+ +ARA+ + + DD S+VD T + + L++ T +
Sbjct: 479 NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI-----LDGLKRYTKGCTTFI 533
Query: 775 VTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+T ++ D+ILVL G++ G ++ELL
Sbjct: 534 ITQKIPTALLADKILVLHEGKVAGFGTHKELL 565
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 129 bits (328), Expect = 4e-31
Identities = 83/431 (19%), Positives = 175/431 (40%), Gaps = 72/431 (16%)
Query: 932 ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLF----FD 987
+ +GIL+ + A + + + FA+ AS+ F + +F+ + F +
Sbjct: 63 LKTGILMLIVALIGAVGGIGC---TVFAS----YASQNFGADLRRDLFRKVLSFSISNVN 115
Query: 988 STPVGRILTRLSSD-----------LSILDFDIPF----SIVFVAASGTELLAIIGIMTF 1032
++TRL++D L I+ P IV + +L +++ +
Sbjct: 116 RFHTSSLITRLTNDVTQLQNLVMMLLRIV-VRAPLLFVGGIVMAVSINVKLSSVLIFL-- 172
Query: 1033 VTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNM 1092
+ + + + + + +N + E GV +RAF
Sbjct: 173 ----IPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVR--------ENLLGVRVVRAFRR 220
Query: 1093 ----VDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV-----LI 1143
+ F + L ++ + + L + + ++ L+
Sbjct: 221 EEYENENFRKANESL----RRSIISAFSLIVFAL----PLFIFIVNMGMIAVLWFGGVLV 272
Query: 1144 PRGYVAPG-LVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202
+ G ++ +Y + + + + ++ S +R+ + ++ E PAI E
Sbjct: 273 RNNQMEIGSIMAY-TNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLN---EKPAIEE 328
Query: 1203 DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISA 1262
+ +G + ++ RY N VL G+ + G+ V V+G TGSGK+TL++
Sbjct: 329 ADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNL 388
Query: 1263 LFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY----- 1317
+ RL++P G + +D +D+ ++ LKDLR +S +PQE LF G+++ NL +
Sbjct: 389 IPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENL----KWGREDA 444
Query: 1318 SDDEIWKVSQL 1328
+DDEI + +++
Sbjct: 445 TDDEIVEAAKI 455
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 1e-41
Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 30/238 (12%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL------YAILGEIPKISG-- 652
NFS+ + TL+ +N I A+ G G+GKS++ Y G+I KI G
Sbjct: 24 NFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI-KIGGKN 82
Query: 653 --TVN---LYGSIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
N + I V Q + + + +I+ NILYGK KA K+ L I
Sbjct: 83 VNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALP 142
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
T +G +G+ LSGG++QRI +AR + D I +FD+ S++D+ T A
Sbjct: 143 KKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL-----FQKA 197
Query: 767 LEK----KTVILVTHQVEFLSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
+E +T+I++ H+ LS + + I++L G+I + G +++LL + ++ N
Sbjct: 198 VEDLRKNRTLIIIAHR---LSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 4e-22
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 13/133 (9%)
Query: 1199 AIVEDKRPPSSWPFKGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGK 1256
+ F IE + Y + N LK I GT +VG TGSGK
Sbjct: 1 GLESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHR-TLKSINFFIPSGTTCALVGHTGSGK 59
Query: 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL 1316
+T+ L+R + G I I G ++ +R + I+PQ+ LF +++ N+ L
Sbjct: 60 STIAKLLYRFYDAEG-DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI----L 114
Query: 1317 Y-----SDDEIWK 1324
Y +D+E+ K
Sbjct: 115 YGKLDATDEEVIK 127
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 1e-41
Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 34/240 (14%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGT 653
+F++D LR ++ + + IA G G GKS++ + GEI I G
Sbjct: 8 DFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI-TIDGQ 64
Query: 654 -------VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYD--KAIKACALDKDINN 704
N I +VSQ S I +G+IR+N+ YG D D + + + N
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
TE+G+RG+ +SGGQ+QR+ +ARA + I + D+ +++D+ + + V
Sbjct: 125 MPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM-----VQ 179
Query: 765 AALEK----KTVILVTHQVEFLSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
AL+ +T +++ H+ LS + D+I +E GQIT SG + EL+ + + V+
Sbjct: 180 KALDSLMKGRTTLVIAHR---LSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 7e-26
Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ R + Y ++ +L+ I+ + + G +G GK+T+ S L R +P G I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD--PLGLYSDDEIWKVSQL 1328
IDG I ++ L++ R ++ + Q+ + G++R NL G Y+D+++W+V L
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDL 115
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 2e-39
Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 33/237 (13%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGT 653
+FS+ TL+ V+ + Q +A+ G GAGKS++L + G I +I G
Sbjct: 60 HFSYADG--RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI-RIDGQ 116
Query: 654 -------VNLYGSIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNF 705
+L I V Q + + + +I DNI YG+ + A +A + I F
Sbjct: 117 DISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAF 176
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
G T++G+RGL LSGG+KQR+ +AR + I L D+ SA+D + A
Sbjct: 177 PEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERA-----IQA 231
Query: 766 ALEK----KTVILVTHQVEFLSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+L K +T I+V H+ LS V D+ILV++ G I + G ++ LL G + +
Sbjct: 232 SLAKVCANRTTIVVAHR---LSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADM 285
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-25
Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 14/167 (8%)
Query: 1167 QVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYR 1226
I +E + + E + + KGRIE + Y
Sbjct: 9 HHSSGLVPRGSHM-FIDMENMFDLLKEETE---VKDLPGAGPLRFQKGRIEFENVHFSYA 64
Query: 1227 PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL 1286
L+ ++ T G + +VG +G+GK+T++ LFR + + G I IDG DI +
Sbjct: 65 DGRE-TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY-----SDDEIWKVSQL 1328
LR + ++PQ+ LF ++ N+ Y +DE+ +Q
Sbjct: 124 ASLRSHIGVVPQDTVLFNDTIADNI----RYGRVTAGNDEVEAAAQA 166
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 1e-38
Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 32/227 (14%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISG-- 652
F + P+ L +NL IK + I + G G+GKS+L I G++ I G
Sbjct: 15 FRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV-LIDGHD 72
Query: 653 --TVNLY---GSIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
+ + V Q + + + SI DNI P M + A K I+
Sbjct: 73 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 132
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
G T +G++G LSGGQ+QRI +ARA+ N+ I +FD+ SA+D + +M
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV-----IMRN 187
Query: 767 LEK----KTVILVTHQVEFLSEV---DRILVLEGGQITQSGNYQELL 806
+ K +TVI++ H+ LS V DRI+V+E G+I + G ++ELL
Sbjct: 188 MHKICKGRTVIIIAHR---LSTVKNADRIIVMEKGKIVEQGKHKELL 231
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 4e-31
Identities = 33/99 (33%), Positives = 55/99 (55%)
Query: 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG 1271
I R ++ RY+P++P++L I + +G +G+VGR+GSGK+TL + R P
Sbjct: 4 HHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 1272 GSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTN 1310
G +LIDG D+ LR ++ ++ Q+ L S+ N
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 102
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 2e-38
Identities = 95/477 (19%), Positives = 174/477 (36%), Gaps = 80/477 (16%)
Query: 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGI-------LI 938
+ + YL L + + + L + Y + I + +
Sbjct: 25 LRRLLGYLRPHTF--TLIMVFVFVTVSSILGVLSPYLIGKTID--VVFVPRRFDLLPRYM 80
Query: 939 GVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRL 998
+ + +++ + + L + + P+ FFD TP G I++R+
Sbjct: 81 LILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRV 140
Query: 999 SSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQ----VLVVAIFAMVAVRFV--- 1051
+D+ ++ + SI+ + L + +M V L + ++ + V
Sbjct: 141 INDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQ 200
Query: 1052 -QRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDI--DA 1108
++Y+ R L ++NG E G+ I+ F ++ + + ++ +
Sbjct: 201 TRKYFYENQRVLGQLNG--------IIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKV 252
Query: 1109 SL---FFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVG--LSLSYAFTL 1163
F +GV+ L L G+ G L+L T+
Sbjct: 253 GTKAQIF--SGVL----------PPLMNMVNNL-------GFALISGFGGWLALKDIITV 293
Query: 1164 TGTQVFL--SRWYC-------YLANYIIS----VERIKQFMHIPPEPPAIVEDKRPPSSW 1210
F+ SR + N I ERI + + + E D
Sbjct: 294 GTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD----DPDAVELR 349
Query: 1211 PFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA 1270
+G IE + + Y P+ LK IT G +V +VG TGSGKTT+++ L R +
Sbjct: 350 EVRGEIEFKNVWFSYDKKKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD 408
Query: 1271 GGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY-----SDDEI 1322
G IL+DG+DI + LR + I+ Q+ LF +V+ NL Y +D+EI
Sbjct: 409 RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENL----KYGNPGATDEEI 461
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 4e-38
Identities = 133/612 (21%), Positives = 250/612 (40%), Gaps = 93/612 (15%)
Query: 260 SNNNGNLVRKVITNVYLKEN----IFIAICALLRTIAVVVGPLLLYAFVN--YSNRGEEN 313
N +R+++ YL+ + I + + + +I V+ P L+ ++ + R +
Sbjct: 18 LKNPTATLRRLLG--YLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDL 75
Query: 314 LQEGLSIVGCLIITKVVESFTQRHCFFG-SRRSGMRMRSALMVAVYQKQLKLSSLGRK-- 370
L + I+G + + + Q S+ R+R L KL +
Sbjct: 76 LPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFE-------KLQRVPVGFF 128
Query: 371 -KHSTGEIVNYIA--VDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVG----LGALPG 423
+ G+I++ + VD L S+ Q F I L G V + +
Sbjct: 129 DRTPHGDIISRVINDVDNINNV-------LGNSII-QFFSGIVTLAGAVIMMFRVNVILS 180
Query: 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTS---EILNNMKIIKLQSWEEKFKS 480
LV I L + + + + F Q + E ++ + +IKL + EEK
Sbjct: 181 LVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKE-- 238
Query: 481 LIESRREKEFKWLSEAQLRKAYGTVIY--WMSPTI--ISSVIFLGCALTGS--APLNAST 534
++F ++E+ + I+ + P + ++++ F + G A + T
Sbjct: 239 ------MEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIIT 292
Query: 535 IFTVLATL---RSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKS 591
+ T+ + R P+ + +++ S +RI L D E DD + L++
Sbjct: 293 VGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEIL-DLEEEKDDPDAVELREV 351
Query: 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL------YAIL- 644
++ + FS+D + P L+ + IK QK+A+ G G+GK++++ Y +
Sbjct: 352 RGEIEFKNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR 409
Query: 645 GEIPKISGT-------VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYD--KAIKA 695
G+I + G +L SI V Q + + S ++++N+ YG P + +A K
Sbjct: 410 GQI-LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEIKEAAKL 467
Query: 696 CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT- 754
D I + G T + G +LS GQ+Q + + RA + I + D+ S VD T
Sbjct: 468 THSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTE 527
Query: 755 ----AATLFNECVMAAL-EKKTVILVTHQVEFLS---EVDRILVLEGGQITQSGNYQELL 806
AA M L E KT I++ H+ L+ D I+VL G+I + G + EL+
Sbjct: 528 KSIQAA-------MWKLMEGKTSIIIAHR---LNTIKNADLIIVLRDGEIVEMGKHDELI 577
Query: 807 LAGTAFEQLVNA 818
+ +L +
Sbjct: 578 QKRGFYYELFTS 589
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 4e-38
Identities = 59/236 (25%), Positives = 101/236 (42%), Gaps = 36/236 (15%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISG----TVNLY- 657
+ L+G+ + + A+ G G+GKS++ + G++ + G + +
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV-LLDGEPLVQYDHHY 90
Query: 658 --GSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACAL---DKDINNFDHGDLTE 712
+A V Q + S R+NI YG ++ I+ F G TE
Sbjct: 91 LHTQVAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGAHDFISGFPQGYDTE 149
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--- 769
+G+ G LSGGQ+Q + LARA+ + + D+ SA+DA V L +
Sbjct: 150 VGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLR-----VQRLLYESPE 204
Query: 770 ---KTVILVTHQVEFLSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819
+TV+L+T Q LS IL L+ G + + G + +L+ G + +V A
Sbjct: 205 WASRTVLLITQQ---LSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVEAL 257
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 4e-26
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 1211 PFKGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268
KG ++ + + Y PN VL+G+T T G +VG GSGK+T+ + L L +
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQ-VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 1269 PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTN 1310
P GG +L+DG + L +++ + QEP LF S R N
Sbjct: 71 PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFREN 112
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 39/224 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L+ ++ I K + G GAGK++LL + P SGTVNL+G
Sbjct: 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96
Query: 659 -SIAYVSQT---SWIQSGSIRDNIL---------YGKPMDKARYDKAIKACALDKDINNF 705
I +VS + + + + D ++ Y D+ R ++A + L
Sbjct: 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR-NEAHQ--LLKL----V 149
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN--ECV 763
Q LS G+KQR+ +ARA+ + + D+P + +D +L + + +
Sbjct: 150 GMSAK--AQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSL 207
Query: 764 MAALEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELL 806
+ +I VTH +E + +IL+L+ GQ Q G +++L
Sbjct: 208 SDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 8e-11
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I+L Q+ + +LK I+ ++G + + G G+GKTTL++ L G++
Sbjct: 22 IQLDQIGRMKQGKT--ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 1276 IDGVDICSMG--LKDLRVKLSIIPQE 1299
+ G +G + +R + +
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHS 105
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 3e-28
Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 34/211 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVS 664
L +NL++ +K+ + G G+GK++LL AI G +P SG + + G I Y +
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPY-SGNIFINGMEVRKIRNYIRYST 78
Query: 665 Q--TSWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
++ ++ D + K +D+ + + +KA L ++I ++ +
Sbjct: 79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR------RKLYK---- 128
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KTVILVTH 777
LS GQ ++ + A+ + +I D+PF VDA + +++ K ILVTH
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRY-----IKEYGKEGILVTH 183
Query: 778 -QVEFLSEVDRILVL-EGGQITQSGNYQELL 806
+ G ++ + ELL
Sbjct: 184 ELDMLNLYKEYKAYFLVGNRLQGPISVSELL 214
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 1216 IELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
I+L+ + I + L+ I G +V ++G GSGKTTL+ A+ L+ P G+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
I I+G+++ + +R + P +
Sbjct: 60 IFINGMEV-----RKIRNYIRYSTNLPEAY 84
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
++++ ++ F + E + + +N D+ +AV G G GKS+LL +LG I
Sbjct: 2 NKALSVENLGFYYQAENFL--FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 652 GTVNLYGSIAYVSQT-SWIQSGSIRDNILYGKPMDKARY------------DKAIKACAL 698
G + +Y SI +V Q S + S+ D +L G R D + AL
Sbjct: 60 GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMG------RSTHINTFAKPKSHDYQVAMQAL 113
Query: 699 DK-DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
D ++ + + T LSGGQ+Q I +ARA+ ++ + L D+P SA+D
Sbjct: 114 DYLNLTHLAKREFTS-------LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDI 166
Query: 758 LFNECV-MAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQ 798
+ + + +A + TV+ THQ + + ++ L+L
Sbjct: 167 VLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF 209
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ + L Y+ + + + ++G + V+G+ G GK+TL+ L + P G I
Sbjct: 5 LSVENLGFYYQ-AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTL-FRGSVR 1308
+ + +PQ + F SV
Sbjct: 64 VYQ-------------SIGFVPQFFSSPFAYSVL 84
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-24
Identities = 39/194 (20%), Positives = 79/194 (40%), Gaps = 21/194 (10%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
L + ++ + + G G GK++L+ + G + G +++ Q +
Sbjct: 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPK 425
Query: 671 S-GSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726
G++R + G+ ++ +K +D I+ +LSGG+ Q
Sbjct: 426 FPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQ-----------HLSGGELQ 474
Query: 727 RIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMAALEKKTVILVTHQVEFLS 783
R+ + A+ ADIYL D+P + +D+ + + KKT +V H +
Sbjct: 475 RVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR--FILHNKKTAFIVEHDFIMAT 532
Query: 784 EV-DRILVLEGGQI 796
+ D+++V EG
Sbjct: 533 YLADKVIVFEGIPS 546
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 1e-17
Identities = 39/218 (17%), Positives = 71/218 (32%), Gaps = 51/218 (23%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---------------- 659
+ Q + + G+ G GKS+ L + G+ G +
Sbjct: 96 RLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNY 155
Query: 660 --------------IAYVSQTSWIQSGSIR---DNILYGKPMDKARYDKAIKACALDKDI 702
YV G ++ + + + IK
Sbjct: 156 FTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKIL------ 209
Query: 703 NNFDHGDLTEIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
L + +R + LSGG+ QR + + +AD+Y+FD+P S +D
Sbjct: 210 ------QLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQ- 262
Query: 762 CVMAAL--EKKTVILVTHQVEFLSEV-DRILVLEGGQI 796
++ +L K VI V H + L + D + ++ G
Sbjct: 263 -IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 3e-08
Identities = 21/135 (15%), Positives = 36/135 (26%), Gaps = 18/135 (13%)
Query: 1195 PEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGS 1254
+ VL FS+ + ++G G+
Sbjct: 330 RTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGT 389
Query: 1255 GKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT--LFRGSVRTN-- 1310
GKTTLI L ++P G + + K++ LF +R
Sbjct: 390 GKTTLIKLLAGALKPDEGQDIPKL------NVSMKPQKIAPKFPGTVRQLFFKKIRGQFL 443
Query: 1311 --------LDPLGLY 1317
+ PL +
Sbjct: 444 NPQFQTDVVKPLRID 458
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 5/90 (5%)
Query: 1224 RYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS 1283
RY N+ T G +G+VG G GK+T + L +P G
Sbjct: 86 RYSANS--FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQE- 142
Query: 1284 MGLKDLRVKLSIIPQEPTLFRGSVRTNLDP 1313
+K R + + ++ + P
Sbjct: 143 -IIKYFRGS-ELQNYFTKMLEDDIKAIIKP 170
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 1e-22
Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 28/198 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVS 664
L + + I+ + G G GK++LL I + + G + G I ++
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84
Query: 665 QTSWIQSG-SIRDNI-----LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
+ + S+ D + LYG ++K A+++ ++ ++ ++
Sbjct: 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV------------EVLDLKKKLG 132
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LS G +R+QLA + +A+IY+ DDP A+D + + + EK VI+ +
Sbjct: 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR- 191
Query: 779 VEFLSEVDRILVLEGGQI 796
E LS D L
Sbjct: 192 -EELSYCDVNENLHKYST 208
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+R L + Y L+ IT T +G V G G GKTTL+ + ++P G I+
Sbjct: 11 LEIRDLSVGYDKPV---LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLD 1312
+GV I ++ K+ +P+E + R SV L
Sbjct: 68 YNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLK 100
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 6e-22
Identities = 46/250 (18%), Positives = 94/250 (37%), Gaps = 33/250 (13%)
Query: 569 INAFLLDH-ELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIP---------TLRGVNL 618
IN FL + N +R ++ + V + + ++ L N
Sbjct: 230 INNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNG 289
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWI-QSGSIR- 675
+ K + I + G G GK++ ++GEI G+V ++Y Q + G+++
Sbjct: 290 EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ 349
Query: 676 ---DNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732
+ +++ K L + + + + +LSGG+ Q++ +A
Sbjct: 350 YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN-----------DLSGGELQKLYIAA 398
Query: 733 AVYNDADIYLFDDPFSAVDAHT---AATLFNECVMAALEKKTVILVTHQVEFLSEV-DRI 788
+ +AD+Y+ D P S +D A + K ++ H + + DRI
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKR--VTRERKAVTFIIDHDLSIHDYIADRI 456
Query: 789 LVLEGGQITQ 798
+V +G
Sbjct: 457 IVFKGEPEKA 466
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 1e-17
Identities = 47/227 (20%), Positives = 80/227 (35%), Gaps = 48/227 (21%)
Query: 613 LRGVNLDI-KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------ 659
+ L K + V G G GK+++L + GEI G N
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 660 ------------------IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
I YV S G++ N + K ++ + D+ + +
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASKFLKGTV--NEILTKIDERGKKDEVKELLNMTNL 131
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
N + LSGG QR+ +A ++ +AD+Y+FD P S +D +
Sbjct: 132 WNKDAN-----------ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK- 179
Query: 762 CVMAAL-EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+ L + K VI+V H + L + D I ++ G +
Sbjct: 180 -AIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYA 225
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-08
Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 17/141 (12%)
Query: 1191 MHIPPEP--PAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGV 1248
M I P+ + E S K +++ ++ + L EG +G+
Sbjct: 243 MKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF---QLVVDNGEAKEGEIIGI 299
Query: 1249 VGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVR 1308
+G G GKTT L + GS+ + + L K I G+V+
Sbjct: 300 LGPNGIGKTTFARILVGEITADEGSVTPEK--------QILSYKPQRIFPNY---DGTVQ 348
Query: 1309 TNL-DPLGLYSDDEIWKVSQL 1328
L + W ++
Sbjct: 349 QYLENASKDALSTSSWFFEEV 369
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 7e-04
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 1224 RYRPNAPLVLKGITC-TFSEGTRVGVVGRTGSGKTTLISALFRLVEP--AGGSILIDGVD 1280
RY+ N K T T +GV+G+ G GKTT++ L + P + + +
Sbjct: 8 RYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDE 64
Query: 1281 ICSMGLKDLR-VKLSIIPQEP 1300
+ LK R ++ +E
Sbjct: 65 V----LKRFRGKEIYNYFKEL 81
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-21
Identities = 43/189 (22%), Positives = 78/189 (41%), Gaps = 21/189 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS- 671
L +I+ + I + G G GK++ + + G G V ++AY Q +
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYE 431
Query: 672 GSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728
G++ + + K + +K + + +LSGG+ QR+
Sbjct: 432 GTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----------DLSGGELQRV 480
Query: 729 QLARAVYNDADIYLFDDPFSAVDAHT---AATLFNECVMAALEKKTVILVTHQVEFLSEV 785
+A + DADIYL D+P + +D + + +KT ++V H V + V
Sbjct: 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH--LMEKNEKTALVVEHDVLMIDYV 538
Query: 786 -DRILVLEG 793
DR++V EG
Sbjct: 539 SDRLIVFEG 547
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 1e-17
Identities = 42/223 (18%), Positives = 73/223 (32%), Gaps = 50/223 (22%)
Query: 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA---------------------- 661
+ + G G GK++ + + G++ N
Sbjct: 118 MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIR 177
Query: 662 ------YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
YV G +R+ + K + + ++ N +L +
Sbjct: 178 PVVKPQYVDLLPKAVKGKVREL------LKKVDEVGKFEEVVKELELENVLDRELHQ--- 228
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVI 773
LSGG+ QR+ +A A+ A Y FD+P S +D + V+ L E K V+
Sbjct: 229 ----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR--VIRRLANEGKAVL 282
Query: 774 LVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+V H + L + D I V+ G G Y +
Sbjct: 283 VVEHDLAVLDYLSDVIHVVYGE----PGVYGIFSKPKGTRNGI 321
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-08
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 22/123 (17%)
Query: 1186 RIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTR 1245
R + + + V+ +R +E +L Y L+ +G
Sbjct: 335 RFRPYEIRFTKLSERVDVERET-------LVEYPRLVKDYGSFK---LEVEPGEIRKGEV 384
Query: 1246 VGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG 1305
+G+VG G GKTT + L + EP G + D ++ K +K + G
Sbjct: 385 IGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL----TVAYKPQYIKAE--------YEG 432
Query: 1306 SVR 1308
+V
Sbjct: 433 TVY 435
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 1224 RYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP------AGGSILID 1277
RY NA + +G VG+VG G+GKTT + L + P +I
Sbjct: 100 RYGVNA--FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIR 157
Query: 1278 GVDICSMGLKDLRV---KLSIIPQEP 1300
+ R+ ++ + +
Sbjct: 158 AFRGNELQNYFERLKNGEIRPVVKPQ 183
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 1e-21
Identities = 61/261 (23%), Positives = 103/261 (39%), Gaps = 30/261 (11%)
Query: 549 VRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR----RISLQKSDRSVKIQEGNFSW 604
V P I Q K + + IN FL L +++VR I K+ V+I+
Sbjct: 231 VYGEPGVYGIFSQPKGTRNGINEFL-RGYLKDENVRFRPYEIKFTKTGERVEIERETLVT 289
Query: 605 DPELAIP----TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI 660
P L L +IK + I + G G GK++ + + G G + ++
Sbjct: 290 YPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTV 349
Query: 661 AYVSQTSWIQS-GSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
AY Q G++ + + K + +K + + +
Sbjct: 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVN--------- 400
Query: 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMAALEKKTVI 773
LSGG+ QR+ +A + DADIYL D+P + +D + + +KT +
Sbjct: 401 --ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH--LMEKNEKTAL 456
Query: 774 LVTHQVEFLSEV-DRILVLEG 793
+V H V + V DR++V EG
Sbjct: 457 VVEHDVLMIDYVSDRLMVFEG 477
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 5e-16
Identities = 43/216 (19%), Positives = 78/216 (36%), Gaps = 46/216 (21%)
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--------PKISGTVNLY--------- 657
+K + + G G GKS+ + + G++ G + +
Sbjct: 39 YRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98
Query: 658 -----GSIA------YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFD 706
G I YV G + + + K + + ++ +KA L+ +
Sbjct: 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--KKADETGKLEEVVKALELENVLEREI 156
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+LSGG+ QR+ +A A+ +A Y FD+P S +D +
Sbjct: 157 Q-----------HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAAR--AIRR 203
Query: 767 L--EKKTVILVTHQVEFLSEV-DRILVLEGGQITQS 799
L E K+V++V H + L + D I V+ G
Sbjct: 204 LSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYG 239
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 5e-09
Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 15/114 (13%)
Query: 1195 PEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGS 1254
+ + +L Y L+ +G +G+VG G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFR---LEVEPGEIKKGEVIGIVGPNGI 323
Query: 1255 GKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVR 1308
GKTT + L + EP G I D ++ K +K + G+V
Sbjct: 324 GKTTFVKMLAGVEEPTEGKIEWDL----TVAYKPQYIKAD--------YEGTVY 365
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 21/117 (17%)
Query: 1216 IELRQLKI----RYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-- 1269
+ QL+ RY NA + EG VG+VG G+GK+T + L + P
Sbjct: 18 SHMEQLEEDCVHRYGVNA--FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL 75
Query: 1270 ----AGGSILIDGVDI--CSMGLKDLRV-KLSIIPQE------PTLFRGSVRTNLDP 1313
+I + L+ ++ + + P +G V L
Sbjct: 76 CGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK 132
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 59/236 (25%), Positives = 95/236 (40%), Gaps = 34/236 (14%)
Query: 594 SVKIQEGNFSWDP--ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
+++ + + L L V+L I + + V G+ G+GKS+LL + G I S
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 652 GTVNLYG----------SIAYVSQTSWIQ--SGSIRDNILYGKPM-------DKARYDKA 692
G V G +I Q Q + + D + + KA
Sbjct: 62 GDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFA-VKNFYPDRDPVPLVKKA 120
Query: 693 IKACALDKDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751
++ LD D R LSGG+K+R+ +A + ++ DI + D+P +D
Sbjct: 121 MEFVGLDFD----------SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLD 170
Query: 752 AHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806
L KTVIL++H +E + VDR++VLE G+ G E L
Sbjct: 171 REGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 1216 IELRQLKIRYRPNAPL---VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
IE+ + + PL L+ ++ +EG + V G TGSGK+TL+ + L+EP G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEP 1300
+L DG ++R + I Q P
Sbjct: 63 DVLYDGERK---KGYEIRRNIGIAFQYP 87
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 88.6 bits (219), Expect = 9e-18
Identities = 50/202 (24%), Positives = 76/202 (37%), Gaps = 26/202 (12%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE----IPKISGTVNLYGSIAYVSQT 666
L L +K A++ +CG G GKS+L+ AI P YV
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEEC-----RTVYVEHD 503
Query: 667 --SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724
S+ D + K + ++ L SGG
Sbjct: 504 IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISAL----------SGGW 553
Query: 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784
K ++ LARAV +ADI L D+P + +D A L + T I ++H FL
Sbjct: 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWL--VNYLNTC-GITSITISHDSVFLDN 610
Query: 785 V-DRILVLEGGQITQ-SGNYQE 804
V + I+ EG ++ + GN+ E
Sbjct: 611 VCEYIINYEGLKLRKYKGNFTE 632
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 5e-11
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVT 776
LSGGQK ++ LA + + + D+P + +D + L AL+ + VI++T
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL-----SKALKEFEGGVIIIT 955
Query: 777 HQVEFLSEV-DRILVLEGGQITQS-GNY 802
H EF + + + ++ G++T S N+
Sbjct: 956 HSAEFTKNLTEEVWAVKDGRMTPSGHNW 983
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 2e-07
Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 15/202 (7%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
VK+ F + P + P + +N + +IAV G GAGKS+L+ + GE+ SG V
Sbjct: 672 VKVTNMEFQY-PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 655 NLYG--SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+ IAY+ Q ++ S D + + + D++ + + + E
Sbjct: 731 YTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGE-------DRETMDRANRQINE 783
Query: 713 IGQRGLN---LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+N G +RI + + Y ++ F + + +M+
Sbjct: 784 NDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNA 843
Query: 770 KTVI--LVTHQVEFLSEVDRIL 789
LV + ++EVD
Sbjct: 844 WIPRGELVESHSKMVAEVDMKE 865
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 3e-06
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
K +++ ++ +Y + + I S +R+ V+G G+GK+TLI+ L + P G
Sbjct: 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
Query: 1273 SI 1274
+
Sbjct: 729 EV 730
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 6e-05
Identities = 21/158 (13%), Positives = 45/158 (28%), Gaps = 8/158 (5%)
Query: 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKG 1235
Y+ ++ + + +G +L + A ++L
Sbjct: 395 YMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGE-DLCNCEFSLAYGAKILLNK 453
Query: 1236 ITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM-----GLKDLR 1290
R G+ G G GK+TL+ A+ G + + G
Sbjct: 454 TQLRLKRARRYGICGPNGCGKSTLMRAIAN--GQVDGFPTQEECRTVYVEHDIDGTHSDT 511
Query: 1291 VKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQL 1328
L + + + +++ L G + +S L
Sbjct: 512 SVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISAL 549
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 50/244 (20%), Positives = 102/244 (41%), Gaps = 43/244 (17%)
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650
D +K++E N+++ L+G+N++IK + A+ G G GKS+L G +
Sbjct: 4 EDYILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS 61
Query: 651 SGTVNLYG-SIAYVSQTSW----------------IQSGSIRDNILYGKPMD-------- 685
SG + I Y + + S S+ ++ +G ++
Sbjct: 62 SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG-AVNMKLPEDEI 120
Query: 686 KARYDKAIKACALDKDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFD 744
+ R D A+K + + + LS GQK+R+ +A + + + + D
Sbjct: 121 RKRVDNALKRT------------GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILD 168
Query: 745 DPFSAVDAHTAATLFNECV-MAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802
+P + +D + + V M T+I+ TH ++ + D + V++ G++ GN
Sbjct: 169 EPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 228
Query: 803 QELL 806
+E+
Sbjct: 229 KEVF 232
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 7e-13
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 16/120 (13%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+++ +L Y LKGI G ++G G GK+TL +++P+ G IL
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 1276 IDGVDICS--MGLKDLRVKLSIIPQEPT--LFRGSVR-------TNLDPLGLYSDDEIWK 1324
D I G+ LR + I+ Q+P LF SV N + L +DEI K
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVN---MKL-PEDEIRK 122
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 4e-17
Identities = 43/220 (19%), Positives = 83/220 (37%), Gaps = 40/220 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659
L ++ +++ + + + G GAGKS+LL + G G++ G
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALH 74
Query: 660 IAYVSQTSWIQSG-SIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
AY+SQ + + + + A L + R
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL------------ALDDKLGR 122
Query: 717 GLN-LSGGQKQRIQLARA-------VYNDADIYLFDDPFSAVD-AHTAATLFNECVMAAL 767
N LSGG+ QR++LA + L D+P +++D A +A +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALSQ 181
Query: 768 EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+ +++ +H + R +L+GG++ SG +E+L
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
++L+ + L ++ G + +VG G+GK+TL++ + + GSI
Sbjct: 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 56
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEPTL-FRGSVR 1308
G + + L + + + Q+ T F V
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 4e-17
Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 41/222 (18%)
Query: 616 VNLDIKWAQK-IAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGS-----------IAY 662
+N+D + + + G GAGKS L I G P G V L G+ I +
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGF 74
Query: 663 VSQTSWIQS------GSIRDNILYG-KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
V Q S+ NI YG + +++ D+ ++ +K + +
Sbjct: 75 V-----PQDYALFPHLSVYRNIAYGLRNVERVERDRRVRE-MAEK-------LGIAHLLD 121
Query: 716 RGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---T 771
R LSGG++QR+ LARA+ + L D+P SAVD T L E + ++++
Sbjct: 122 RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEE--LRFVQREFDVP 179
Query: 772 VILVTH-QVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812
++ VTH +E D + V+ G+I + G +EL A
Sbjct: 180 ILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE 221
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 6e-17
Identities = 75/280 (26%), Positives = 121/280 (43%), Gaps = 61/280 (21%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSIAYVSQTSW--- 668
L ++L + + + + G+ G GK++LL + G E P SG ++L G + T+
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-SGEISLSGKTIFSKNTNLPVR 78
Query: 669 -------IQSG------SIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+Q G ++ NI YG A+ + I+A L+ ++E
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEA-MLEL-------TGISE 130
Query: 713 IGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK- 770
+ R + LSGGQ+QR LARA+ D ++ L D+PFSA+D + + M A +
Sbjct: 131 LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED--MIAALRAN 188
Query: 771 --TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL-----------------LLAGT 810
+ + V+H + E L DRI V++ G+I Q+ + EL +
Sbjct: 189 GKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFIGEGIVFPAA 248
Query: 811 AFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTA-RPE 849
+NA A LG L Q GA +G RPE
Sbjct: 249 -----LNADGTADCRLGRL--PVQSGAPAGTRGTLLIRPE 281
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 4e-05
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
+ + L ++ VL I+ + G + ++G +G GKTTL+ L +P G I
Sbjct: 4 ALHIGHLSKSFQNTP--VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 1275 LIDGVDICSMG 1285
+ G I S
Sbjct: 62 SLSGKTIFSKN 72
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 3e-16
Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 52/219 (23%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYG-SIAYVS--QTS 667
L+G++L +K + +++ G+ G+GKS+LLY ILG + P G V L G + Y + + S
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPT-EGKVFLEGKEVDYTNEKELS 77
Query: 668 WIQSGSI---------------RDNI----LYGKPMDKARYDKAIKACALDKDINNFDHG 708
+++ + +N+ L K ++ L +
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL--LSE-------- 127
Query: 709 DLTEIGQRGLN----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
+G + LSGG++QR+ +ARA+ N+ + D+P +D+ VM
Sbjct: 128 --LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR-----VM 180
Query: 765 AALEK-----KTVILVTHQVEFLSEVDRILVLEGGQITQ 798
K ++++VTH+ E R L ++ G++
Sbjct: 181 DIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 3e-07
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ +K R +LKGI+ + +G V ++G +GSGK+TL+ L L P G +
Sbjct: 5 LRAENIKKVIRGYE--ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 1276 IDGVDICSMGLKDL 1289
++G ++ K+L
Sbjct: 63 LEGKEVDYTNEKEL 76
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 1e-15
Identities = 54/232 (23%), Positives = 97/232 (41%), Gaps = 49/232 (21%)
Query: 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIP-----KISGT-VNLYG 658
+ + L VN++I+ ++ + G GAGK++ + I G ++P V G
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73
Query: 659 S---------IAYVSQTSWIQS------GSIRDNILYG---KPMDKARYDKAIKACA--L 698
I V Q+ + +NI + M K K ++ A L
Sbjct: 74 KLIVPPEDRKIGMV-----FQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL 128
Query: 699 DKDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
D + + LSG Q+QR+ LARA+ D + L D+PFS +DA +
Sbjct: 129 D----------IHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178
Query: 758 LFNECVMAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+ ++ + T+++V+H + + DR+ VL G++ Q G ++L
Sbjct: 179 ARAL--VKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 6e-15
Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 48/217 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGS-----------I 660
+RGV+ I+ + + + G G+GK+++L I G E P G V + G +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT-KGDVWIGGKRVTDLPPQKRNV 89
Query: 661 AYVSQ--------TSWIQSGSIRDNILYG---KPMDKA-RYDKAIKACALDKDINNFDHG 708
V Q T + DN+ +G K + K + + +
Sbjct: 90 GLVFQNYALFQHMT-------VYDNVSFGLREKRVPKDEMDARVRELLRFMR-------- 134
Query: 709 DLTEIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
L R + LSGGQ+QR+ LARA+ + LFD+PF+A+D L + +
Sbjct: 135 -LESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTF--VRQV 191
Query: 768 EKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSG 800
+ T + VTH Q E L DR+LVL G + Q G
Sbjct: 192 HDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFG 228
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE ++ Y P ++G++ EG VG++G +GSGKTT++ + L P G +
Sbjct: 15 IEFVGVEKIY-PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 1276 IDGVDI 1281
I G +
Sbjct: 74 IGGKRV 79
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 71/242 (29%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYG-SIAYVSQT 666
I L V+L + Q V G+ GAGKS+L+ + L E P G+V + G + +S++
Sbjct: 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQELTTLSES 98
Query: 667 SW----------------IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
+ S ++ N+ P++ K
Sbjct: 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVAL--PLELDNTPKD------------------ 138
Query: 711 TEIGQR--------GL---------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753
E+ +R GL NLSGGQKQR+ +ARA+ ++ + L D SA+D
Sbjct: 139 -EVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 754 TAATLFNECVMAALEKK-------TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
T ++ L K T++L+TH+++ + + D + V+ G++ + E+
Sbjct: 198 TTRSIL------ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
Query: 806 LL 807
Sbjct: 252 FS 253
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-10
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
I+L + + + L ++ G GV+G +G+GK+TLI + L P GS
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 1274 ILIDGVDICSMGLKDLR 1290
+L+DG ++ ++ +L
Sbjct: 85 VLVDGQELTTLSESELT 101
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 57/228 (25%)
Query: 607 ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYG------ 658
E I L+ VNL+IK + +++ G G+GKS++L I+G + P G V +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPT-EGEVYIDNIKTNDL 72
Query: 659 -----------SIAYVSQT-SWIQSGSIRDNI----LYGKPMD---KARYDKAIKACALD 699
I +V Q + I + +N+ ++ + R +A++ L
Sbjct: 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC--LK 130
Query: 700 KDINNFDHGDLTEIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754
E+ +R N LSGGQ+QR+ +ARA+ N+ I L D P A+D+ T
Sbjct: 131 M----------AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKT 180
Query: 755 AATLFNECVMAALEK------KTVILVTHQVEFLSEVDRILVLEGGQI 796
+M L+K KTV++VTH + +RI+ L+ G++
Sbjct: 181 GEK-----IMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 1216 IELRQLKIRYR--PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
++L+ + Y+ LK + EG V ++G +GSGK+T+++ + L +P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1274 ILIDGVDICSMGLKDL 1289
+ ID + + +L
Sbjct: 62 VYIDNIKTNDLDDDEL 77
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-14
Identities = 61/218 (27%), Positives = 95/218 (43%), Gaps = 43/218 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGS-----------I 660
L ++L ++ + + G GAGK+ L I G +P SG + L G I
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLSPEKHDI 74
Query: 661 AYVSQ--------TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
A+V Q ++ N+ +G M K + K + +
Sbjct: 75 AFVYQNYSLFPHMN-------VKKNLEFGMRMKKIKDPKRVLD-TARD-------LKIEH 119
Query: 713 IGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK- 770
+ R L LSGG++QR+ LARA+ + I L D+P SA+D T ++ L KK
Sbjct: 120 LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREM--LSVLHKKN 177
Query: 771 --TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
TV+ +TH Q E DRI V+ G++ Q G +E+
Sbjct: 178 KLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 46/217 (21%), Positives = 90/217 (41%), Gaps = 38/217 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660
L+G++ +I+ + + G GAGK++ L I I SG V ++G I
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90
Query: 661 AYVSQTSWIQSG-SIRDNI-----LYGKPMD--KARYDKAIKACALDKDINNFDHGDLTE 712
+Y+ + + + + Y + ++A + L + I
Sbjct: 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK--------- 141
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV 772
R S G +++ +ARA+ + + + D+P S +D A + A+ E T+
Sbjct: 142 --DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 199
Query: 773 ILVTHQVEFLSEV----DRILVLEGGQITQSGNYQEL 805
++ +H + EV DRI ++ G I ++G +EL
Sbjct: 200 LVSSH---NMLEVEFLCDRIALIHNGTIVETGTVEEL 233
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ ++ L+ R +LKGI+ EG G++G G+GKTT + + L++P+ G +
Sbjct: 16 VVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLD 1312
+ G ++ + +R +S +P+E +R L
Sbjct: 74 VFGKNVVEEPHE-VRKLISYLPEEAGAYRNMQGIEYLR 110
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 64/232 (27%), Positives = 98/232 (42%), Gaps = 60/232 (25%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYGS------- 659
L +NL IK + +A+ G G+GKS+LLY I G + SG +
Sbjct: 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT--SGKIYFDEKDVTELPP 72
Query: 660 ----IAYVSQTSWIQS------GSIRDNILYG---KPMDKARYDKAIKACALDKDINNFD 706
+ V Q+ ++ NI + + + DK ++ A I+
Sbjct: 73 KDRNVGLV-----FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKL- 126
Query: 707 HGDLTEIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----HTAAT 757
LN LSGGQ+QR+ +ARA+ + ++ L D+P S +DA A
Sbjct: 127 -----------LNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAE 175
Query: 758 LFNECVMAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
L L+K+ T + VTH Q E L+ DRI V+ G+I Q G E+
Sbjct: 176 L------KRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 9e-13
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 9/92 (9%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE--CVMAAL--EKKTVILV 775
LSGGQ+QR+ +ARA+ + D+ LFD+P SA+D L E +M L E KT+++V
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE----LVGEVLRIMQQLAEEGKTMVVV 209
Query: 776 THQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
TH++ F V ++ L G+I + G+ +++
Sbjct: 210 THEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 8e-09
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ + L RY + VLKG++ G + ++G +GSGK+T + + L +P+ G+I+
Sbjct: 7 LHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64
Query: 1276 IDGVDICSMGLKDLRVK 1292
++G +I + KD ++K
Sbjct: 65 VNGQNINLVRDKDGQLK 81
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 1e-12
Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 48/226 (21%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYGS------- 659
+ + GV+ ++K + +A+ G G GK++ L + G + SG +
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT--SGEIYFDDVLVNDIPP 72
Query: 660 ----IAYVSQTSWIQS------GSIRDNILYG---KPMDKARYDKAIKACA--LDKDINN 704
+ V Q+ ++ +NI + + + K +K + A L
Sbjct: 73 KYREVGMV-----FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLL----- 122
Query: 705 FDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ + R LSGGQ+QR+ LARA+ + LFD+P S +DA+ + E
Sbjct: 123 -----IDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAE-- 175
Query: 764 MAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+ L+++ T + VTH Q E ++ RI V G++ Q G E+
Sbjct: 176 IKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 3e-12
Identities = 64/235 (27%), Positives = 102/235 (43%), Gaps = 60/235 (25%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI--L-----GEIPKISGT-VNLYGS- 659
+ +R ++L++K + + + G G GK++ L I L G+I I V
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI-YIGDKLVADPEKG 73
Query: 660 ---------IAYVSQTSWIQS------GSIRDNILYG---KPMDKARYDKAIKACA--LD 699
IA V QS ++ DNI + + + + D+ ++ A L
Sbjct: 74 IFVPPKDRDIAMV-----FQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG 128
Query: 700 KDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----HT 754
LTE+ R LSGGQ+QR+ L RA+ ++L D+P S +DA
Sbjct: 129 ----------LTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 755 AATLFNECVMAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
A L L+++ T I VTH QVE ++ DRI V+ G + Q G+ E+
Sbjct: 179 RAEL------KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 3e-12
Identities = 64/230 (27%), Positives = 98/230 (42%), Gaps = 56/230 (24%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYGS------- 659
+ +NL IK + + + G G GK++ L I G E G +
Sbjct: 23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT--EGRIYFGDRDVTYLPP 80
Query: 660 ----IAYVSQTSWIQS------GSIRDNILYG---KPMDKARYDKAIKACA--LDKDINN 704
I+ V QS ++ +NI + K K DK ++ A L
Sbjct: 81 KDRNISMV-----FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ----- 130
Query: 705 FDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----HTAATLF 759
+ E+ R LSGGQ+QR+ +ARA+ + D+ L D+P S +DA A +
Sbjct: 131 -----IEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI- 184
Query: 760 NECVMAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
L++K T I VTH QVE ++ DRI V+ GQ+ Q G+ E+
Sbjct: 185 -----KKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 7e-12
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 9/92 (9%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC--VMAALEKK--TVILV 775
LSGGQ QR+ +ARA+ + I LFD+P SA+D + E VM L + T+++V
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE----MVGEVLSVMKQLANEGMTMVVV 215
Query: 776 THQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
TH++ F EV DR+L ++GG I + G ++L
Sbjct: 216 THEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 5e-09
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I++ QLK + VLKGI EG V V+G +GSGK+T + L L + G I+
Sbjct: 25 IDVHQLKKSFGSLE--VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 82
Query: 1276 IDGVDI 1281
IDG+++
Sbjct: 83 IDGINL 88
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 6e-10
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 14/94 (14%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----HTAATLFNECVMAALEKK---TV 772
LSGGQ+QR+ + R + + ++L D+P S +DA + + L K+ T+
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI------SRLHKRLGRTM 187
Query: 773 ILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
I VTH QVE ++ D+I+VL+ G++ Q G EL
Sbjct: 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 7e-10
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
E++ L + Y A +KGI G V ++G G+GKTT +SA+ LV G I+
Sbjct: 8 EVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 1277 DGVDICSMGLK-DLRVKLSII--PQEPTLFRG-SVRTNLDPLGLYS 1318
+G DI + ++ I P+ +F +V NL +G Y+
Sbjct: 66 NGQDI--TNKPAHVINRMGIALVPEGRRIFPELTVYENLM-MGAYN 108
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 7e-10
Identities = 55/229 (24%), Positives = 89/229 (38%), Gaps = 50/229 (21%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTS 667
AI ++G++L + Q + + G+ GAGK++ L AI G + G + G I
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 668 WIQSG--------------SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE- 712
+ G ++ +N++ G R DK L+ + F L E
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYN---RKDKEGIKRDLEWIFSLFPR--LKER 132
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP------------FSAVDAHTAATLFN 760
+ Q G LSGG++Q + + RA+ + + + D+P F + N
Sbjct: 133 LKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK------IN 186
Query: 761 ECVMAALEKKTVILV---THQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ E T++LV L VLE GQI G ELL
Sbjct: 187 Q------EGTTILLVEQNALGA--LKVAHYGYVLETGQIVLEGKASELL 227
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 3e-08
Identities = 93/690 (13%), Positives = 198/690 (28%), Gaps = 195/690 (28%)
Query: 459 TSEI-LNNMKIIKLQSWEEKFKSLIESRREKEF--KWLSEAQLRKAYGTVIYWMSPTIIS 515
T E I L +E+ F + + ++ LS+ ++ S +S
Sbjct: 11 TGEHQYQYKDI--LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM------SKDAVS 62
Query: 516 SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPV--RMIPEALSIMIQVKVSFDRIN-AF 572
+ L TL S E + + + E L RIN F
Sbjct: 63 GTLRL------------------FWTLLSKQEEMVQKFVEEVL-----------RINYKF 93
Query: 573 LLD--HELNNDDVRRISLQKSDRSVKIQEGN--FS----WDPELAIPTLRGVNLDIKWAQ 624
L+ + R ++ N F+ + LR L+++ A+
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQP-YLKLRQALLELRPAK 151
Query: 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIR--DNILYGK 682
+ + G +G+GK+ + + + I W+ + + +L +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQC---KMDFKIF------WLNLKNCNSPETVL--E 200
Query: 683 PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ-RIQLARAVYNDADIY 741
+ K Y +D + + L + Q + R L Y + +
Sbjct: 201 MLQKLLYQ-------IDPNWTSRSDHSSNIK----LRIHSIQAELRRLLKSKPYENCLLV 249
Query: 742 LFDDPFSA--VDAHTAATLFN-ECVMAALEKKTVIL-----VTHQVEFLSEVDRILVLEG 793
L + +A +A FN C K ++ VT + + L
Sbjct: 250 L-LNVQNAKAWNA------FNLSC-------KILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 794 GQITQSGNYQELLL--AGTAFEQLVNAHRDAITGLGPL----------------DNAGQG 835
+T + LLL + L R+ +T P DN
Sbjct: 296 MTLTPD-EVKSLLLKYLDCRPQDL---PREVLTT-NPRRLSIIAESIRDGLATWDNWKHV 350
Query: 836 GAEKVEKGRTA-----RPEEPN------GIYPRKESSEGEISVKGL----TQLTEDEEME 880
+K+ + P E ++P S+ I L + + + M
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--PSA--HIPTILLSLIWFDVIKSDVMV 406
Query: 881 IGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITS--GILI 938
+ ++ L + + + + L +++ + ++
Sbjct: 407 V--------VNKL-HKYSL-VEKQPKESTISIPSIY------LELKVKLENEYALHRSIV 450
Query: 939 GVYAGVS-------TASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFD---- 987
Y + YF S HL + F M+F D
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-------RMVFLDFRFL 503
Query: 988 STPVGRILTRLSSDLSILDF--DIPFSIVFVAASGTELLAIIG-IMTFVTW--QVLVVAI 1042
+ T ++ SIL+ + F ++ + + ++ I+ F+ + L+ +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 1043 FAMVAVRFVQR--------YYIATARELIR 1064
+ ++ + +++ R
Sbjct: 564 YT----DLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 2e-05
Identities = 78/467 (16%), Positives = 140/467 (29%), Gaps = 140/467 (29%)
Query: 77 GIAYL--GYC---------LWNLIAKNDSSMSWLVSTVRGLIWVSLAISLLVKRSK-WIR 124
I +L C L L+ + D + + S I L + + +R
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-------SSNIKLRIHSIQAELR 235
Query: 125 MLITLWWMSFSLLVL----------ALNIE--ILARTYTINVVYILPLPVNLLLLFSAFR 172
L+ LLVL A N+ IL T V L +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL-----------SAA 284
Query: 173 NFSHFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTFSWIN------PLLSLGYSKPL 226
+H + + +L+ + + LL K +++ P L + P
Sbjct: 285 TTTHISL-DHHSMTLTPD------EVK----SLLLK----YLDCRPQDLPREVLTTN-PR 328
Query: 227 ALEDIPSLVPEDEASFAYQKFAYAWDSL--VRENNSNN-NGNLVRKVITNVYLKENIF-- 281
L I + + A++ K D L + E++ N RK ++ + ++F
Sbjct: 329 RLSIIAESIRDGLATWDNWKH-VNCDKLTTIIESSLNVLEPAEYRK----MFDRLSVFPP 383
Query: 282 ---I---AICALLRTIAVVVGPLLLYAFVNYS--NRGEENLQEGLSIVGCLIITKV-VES 332
I + + + +++ YS + + +SI + KV +E+
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST--ISIPSIYLELKVKLEN 441
Query: 333 FTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP 392
H R +V Y + S I Y+ D Y F
Sbjct: 442 EYALH-----RS---------IVDHYNIP-------KTFDSDDLIPPYL--DQY----F- 473
Query: 393 FWF---HLT-------WSLALQLFLAIGVLFGVVGLGA---LPGLVLFLICGLLNVPFAK 439
+ HL +L +FL F L +LN
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFR--F----LEQKIRHDSTAWNASGSILNT---- 523
Query: 440 ILQ--KCQSEFMIAQDERL-RSTSEILNNMKIIKLQSWEEKFKSLIE 483
LQ K ++ D + R + IL+ + I+ K+ L+
Sbjct: 524 -LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 4e-05
Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 39/201 (19%)
Query: 1179 NYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITC 1238
NY + IK P + ++R + + + R L L+
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRL---YNDNQVFAKYNV-SRLQPYLKLRQALL 145
Query: 1239 TFSEGTRVGVVGRTGSGKTTL-ISAL--FRLVEPAGGSIL-IDGVDICSMGLKDLRVKLS 1294
V + G GSGKT + + +++ I + ++ + +
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL------NLKNCN-SPETV 198
Query: 1295 IIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTPNSR---------NSRIDID----- 1340
+ + L++ + N +S + ++ + R N + +
Sbjct: 199 LEMLQKLLYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 1341 --FPTFNKFCCRIIKTKQLVT 1359
+ FN C+I L+T
Sbjct: 257 KAWNAFN-LSCKI-----LLT 271
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 698 LDKDINNFDHGDLTEIGQRGLN-LSGGQKQRIQLA------RAVYNDADIYLFDDPFSAV 750
+ + N + E +R L LSGG++ + LA + + + + D+P +
Sbjct: 226 VRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYL 285
Query: 751 DAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792
D L + VILV+H E D ++ +
Sbjct: 286 DEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 327
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 2e-05
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 12/52 (23%)
Query: 450 IAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR----REKEFKWLSEAQ 497
IAQ +RL E ++ W E+ + ++ + E +W +A+
Sbjct: 74 IAQADRLTQEPE--------SIRKWREEQRKRLQELDAASKVMEQEWREKAK 117
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 5e-05
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 16/98 (16%)
Query: 713 IGQRGLNLSGGQKQRIQLA------RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+ LSGG++ + LA + + + + D+P +D L +M
Sbjct: 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT--IMER 108
Query: 767 LEKK--TVILVTHQVEFLSEVDRILVLE------GGQI 796
KK VILV+H E D ++ + ++
Sbjct: 109 YLKKIPQVILVSHDEELKDAADHVIRISLENGSSKVEV 146
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LSGGQ + +++ RA+ + + + D+P + V A +FN + + T +++ H+
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
Query: 779 VEFLSEV-DRILVLEGGQI 796
++ + D + V+ GQI
Sbjct: 213 LDIVLNYIDHLYVMFNGQI 231
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1361 | ||||
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-65 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-20 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-59 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-28 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-57 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-24 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-53 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 7e-26 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-50 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-25 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 7e-50 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-22 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-29 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-13 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-29 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-16 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-28 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 8e-09 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-12 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-27 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 5e-15 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-26 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 9e-16 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 7e-26 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 5e-12 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 7e-26 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-10 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-12 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 7e-25 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-12 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-13 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 8e-25 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-11 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 8e-24 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-13 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-21 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-09 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-16 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-09 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-08 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 6e-08 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 4e-07 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 9e-05 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 0.003 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.002 | |
| d2qm8a1 | 323 | c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo | 0.002 |
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 220 bits (561), Expect = 4e-65
Identities = 95/262 (36%), Positives = 143/262 (54%), Gaps = 7/262 (2%)
Query: 558 IMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVN 617
IM V ++ LL+ ++ R+ S +++ S + P L+ +N
Sbjct: 4 IMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFS----HLCLVGN---PVLKNIN 56
Query: 618 LDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDN 677
L+I+ + +A+ GS G+GK+SLL ILGE+ G + G +++ SQ SWI G+I++N
Sbjct: 57 LNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKEN 116
Query: 678 ILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737
I++G D+ RY +KAC L +DI F D T +G+ G+ LSGGQ+ RI LARAVY D
Sbjct: 117 IIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD 176
Query: 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQIT 797
AD+YL D PF +D T +F CV + KT ILVT ++E L + D+IL+L G
Sbjct: 177 ADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSY 236
Query: 798 QSGNYQELLLAGTAFEQLVNAH 819
G + EL F + +
Sbjct: 237 FYGTFSELQSLRPDFSSKLMGY 258
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 90.7 bits (225), Expect = 2e-20
Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 25/149 (16%)
Query: 1182 ISVERI-----KQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGI 1236
I +E + + F + + D+ + + L + P VLK I
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDR---KHSSDENNVSFSHLCLVGNP----VLKNI 55
Query: 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
+G + + G TGSGKT+L+ + +E + G I G ++S
Sbjct: 56 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFC 102
Query: 1297 PQEPTLFRGSVRTNLDPLGLYSDDEIWKV 1325
Q + G+++ N+ Y + V
Sbjct: 103 SQFSWIMPGTIKENIIFGVSYDEYRYKSV 131
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 202 bits (516), Expect = 2e-59
Identities = 69/245 (28%), Positives = 123/245 (50%), Gaps = 16/245 (6%)
Query: 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI 647
++ + I +F + + P L+ +NL I+ + +A G G GKS+L+ I
Sbjct: 10 IEIKQGRIDIDHVSFQY-NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 648 PKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAI 693
SG + + G I V Q + + S ++++NIL G+P +A
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 694 KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753
K I N G TE+G+RG+ LSGGQKQR+ +AR N+ I + D+ SA+D
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 754 TAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813
+ + + E + + +T ++V H++ ++ D+I+V+E G I ++G ++EL+ A+E
Sbjct: 189 SESIIQ-EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYE 247
Query: 814 QLVNA 818
L +
Sbjct: 248 HLYSI 252
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 114 bits (286), Expect = 1e-28
Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
+GRI++ + +Y N +LK I + +G V VG +G GK+TLI+ + R + G
Sbjct: 14 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 73
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL-DPLGLYSDDEIWKVSQL 1328
ILIDG +I LR ++ ++ Q+ LF +V+ N+ +D+E+ + +++
Sbjct: 74 QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKM 130
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 195 bits (496), Expect = 9e-57
Identities = 63/246 (25%), Positives = 120/246 (48%), Gaps = 17/246 (6%)
Query: 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI 647
+ ++ ++ + F++ +P LR +NL I + +A+ G G+GKS++ I
Sbjct: 7 IDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 65
Query: 648 PKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKA 692
G + + G +A VSQ + + ++ +NI Y + + + ++A
Sbjct: 66 DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA 125
Query: 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
+ IN D+G T IG+ G+ LSGGQ+QRI +ARA+ D+ I + D+ SA+D
Sbjct: 126 ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 185
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812
+ + + + +T +++ H++ + + D I+V+E G I + G + ELL +
Sbjct: 186 ESERAIQ-AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVY 244
Query: 813 EQLVNA 818
QL
Sbjct: 245 AQLHKM 250
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 101 bits (254), Expect = 2e-24
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
G +E R + Y L+ I G V +VGR+GSGK+T+ S + R + G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTN--LDPLGLYSDDEIWKVSQL 1328
IL+DG D+ L LR +++++ Q LF +V N YS ++I + +++
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARM 128
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 185 bits (470), Expect = 3e-53
Identities = 60/241 (24%), Positives = 109/241 (45%), Gaps = 16/241 (6%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
V+ Q+ +F++ + L+G+ ++ + A+ G G+GKS++ + G
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70
Query: 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYD--KAIKACAL 698
+ L G +A V Q + S+++NI YG + A
Sbjct: 71 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
I+ G TE+ + G LSGGQ+Q + LARA+ + + DD SA+DA++ +
Sbjct: 131 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 190
Query: 759 FNECVMAALEK-KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
+ ++V+L+T + + + D IL LEGG I + G +Q+L+ + +V
Sbjct: 191 EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQ 250
Query: 818 A 818
A
Sbjct: 251 A 251
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 105 bits (264), Expect = 7e-26
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 1210 WPFKGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV 1267
+G ++ + + Y RP+ VL+G+T T G +VG GSGK+T+ + L L
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVL-VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64
Query: 1268 EPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
+P GG +L+DG + + L +++ + QEP +F S++ N+
Sbjct: 65 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENI 108
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 175 bits (444), Expect = 6e-50
Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 17/242 (7%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
+ + F + P+ L +NL IK + I + G G+GKS+L I +G V
Sbjct: 2 ITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDK 700
+ G + V Q + + + SI DNI P M + A K
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
I+ G T +G++G LSGGQ+QRI +ARA+ N+ I +FD+ SA+D + +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 761 ECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA-GTAFEQLVNAH 819
+ + +TVI++ H++ + DRI+V+E G+I + G ++ELL + + L
Sbjct: 181 N-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Query: 820 RD 821
D
Sbjct: 240 SD 241
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 103 bits (259), Expect = 3e-25
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I R ++ RY+P++P++L I + +G +G+VGR+GSGK+TL + R P G +L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL-DPLGLYSDDEIWKVSQL 1328
IDG D+ LR ++ ++ Q+ L S+ N+ S +++ ++L
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 115
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 175 bits (444), Expect = 7e-50
Identities = 57/232 (24%), Positives = 114/232 (49%), Gaps = 18/232 (7%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658
+F++D LR ++ + + IA G G GKS++ + +G + + G
Sbjct: 8 DFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65
Query: 659 -----------SIAYVSQTSWIQSGSIRDNILYG--KPMDKARYDKAIKACALDKDINNF 705
I +VSQ S I +G+IR+N+ YG + + + N
Sbjct: 66 IDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
TE+G+RG+ +SGGQ+QR+ +ARA + I + D+ +++D+ + + + + +
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK-ALDS 184
Query: 766 ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
++ +T +++ H++ + + D+I +E GQIT SG + EL+ + + V+
Sbjct: 185 LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 95.3 bits (237), Expect = 3e-22
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ R + Y ++ +L+ I+ + + G +G GK+T+ S L R +P G I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD 1312
IDG I ++ L++ R ++ + Q+ + G++R NL
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLT 97
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 116 bits (292), Expect = 1e-29
Identities = 55/215 (25%), Positives = 93/215 (43%), Gaps = 32/215 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661
+ +NL IK + + + G G GK++ L I G G + +I+
Sbjct: 22 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 81
Query: 662 YVSQTSWIQSG-SIRDNI-----LYGKPMDKA--RYDKAIKACALDKDINNFDHGDLTEI 713
V Q+ + ++ +NI + P D+ R A + +++ +N +
Sbjct: 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------ 135
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTV 772
LSGGQ+QR+ +ARA+ + D+ L D+P S +DA + E + K T
Sbjct: 136 -----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 190
Query: 773 ILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
I VTH + DRI V+ GQ+ Q G+ E+
Sbjct: 191 IYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 225
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 69.8 bits (171), Expect = 1e-13
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
++L L R+ + + T +G + ++G +G GKTT + + L EP G I
Sbjct: 7 VKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNL 1311
D+ L +S++ Q ++ +V N+
Sbjct: 65 FGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENI 99
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 114 bits (286), Expect = 7e-29
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 23/217 (10%)
Query: 605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658
E I L+ VNL+IK + +++ G G+GKS++L I G V +
Sbjct: 13 MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDL 72
Query: 659 -----------SIAYVSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFD 706
I +V Q + I + +N+ P+ + +
Sbjct: 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL--PLIFKYRGAMSGEERRKRALECLK 130
Query: 707 HGDLTE--IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV- 763
+L E + LSGGQ+QR+ +ARA+ N+ I L D P A+D+ T +
Sbjct: 131 MAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 764 MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
+ + KTV++VTH + +RI+ L+ G++ +
Sbjct: 191 LNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 76.8 bits (189), Expect = 4e-16
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 1216 IELRQLKIRYRPNAPL--VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
I+L+ + Y+ + LK + EG V ++G +GSGK+T+++ + L +P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1274 ILIDGVDICSMGLKDL----RVKLSIIPQEPTLF-RGSVRTNL 1311
+ ID + + +L R K+ + Q+ L + N+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENV 104
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 113 bits (285), Expect = 1e-28
Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 20/210 (9%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV---------------NLY 657
++G++L + Q + + G+ GAGK++ L AI G + G + N
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
G ++ +N++ G K + + + Q G
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE----RLKQLG 137
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
LSGG++Q + + RA+ + + + D+P + + +F E T++LV
Sbjct: 138 GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197
Query: 778 QVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+V VLE GQI G ELL
Sbjct: 198 NALGALKVAHYGYVLETGQIVLEGKASELL 227
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 55.7 bits (134), Expect = 8e-09
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E++ L + Y +KGI G V ++G G+GKTT +SA+ LV G I+
Sbjct: 7 LEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 1276 IDGVDICSMGLKDLRVK-LSIIPQEPTLF-RGSVRTNL 1311
+G DI + + ++++P+ +F +V NL
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENL 102
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 112 bits (281), Expect = 5e-28
Identities = 48/231 (20%), Positives = 99/231 (42%), Gaps = 25/231 (10%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L GV++ + + G G+GKS+L+ I G + G V
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 659 SIAYVSQT-SWIQSGSIRDNILYG------KPMDKARYDKAI--KACALDKDINNFDHGD 709
I QT ++ ++ +N+L G P++ Y K I + ++K +
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 710 LTEIG-QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
L+ + ++ LSGGQ + +++ RA+ + + + D+P + V A +FN + +
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 769 KKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
T +++ H+++ + D + V+ GQI G +E + + ++V
Sbjct: 200 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEI 250
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 67.3 bits (164), Expect = 1e-12
Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ + + L G++ + ++G ++G GSGK+TLI+ + ++ G +
Sbjct: 5 LRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 1276 IDGVDICSMGLKDL-RVKLSIIPQEPTLF-RGSVRTNL 1311
+ DI + +L + Q P +V NL
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENL 100
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 109 bits (273), Expect = 4e-27
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 37/228 (16%)
Query: 605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658
I L V+L + Q V G+ GAGKS+L+ + G+V + G
Sbjct: 13 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL 72
Query: 659 ----------SIAYVSQT-SWIQSGSIRDNI-----LYGKPMD--KARYDKAIKACALDK 700
I + Q + + S ++ N+ L P D K R + + L
Sbjct: 73 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD 132
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
+++ NLSGGQKQR+ +ARA+ ++ + L D+ SA+D T ++
Sbjct: 133 KHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 761 ECV-MAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+ T++L+TH+++ + + D + V+ G++ + E+
Sbjct: 182 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 73.8 bits (181), Expect = 5e-15
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
I+L + + + L ++ G GV+G +G+GK+TLI + L P GS
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1274 ILIDGVDICSMGLKD---LRVKLSIIPQEPTLF-RGSVRTNLD-PLGLY--SDDEIWK 1324
+L+DG ++ ++ + R ++ +I Q L +V N+ PL L DE+ +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR 119
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 108 bits (271), Expect = 1e-26
Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 46/230 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L+GV+L + I++ GS G+GKS+ L I G + + G
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 659 ------------SIAYVSQ-TSWIQSGSIRDNILYG--------KPMDKARYDKAIKACA 697
+ V Q + ++ +N++ K + R K +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVG 137
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
+D+ + ++LSGGQ+QR+ +ARA+ + D+ LFD+P SA+D
Sbjct: 138 IDERAQG----------KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 187
Query: 758 LFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+ A E KT+++VTH++ F V ++ L G+I + G+ +++
Sbjct: 188 VLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 76.8 bits (189), Expect = 9e-16
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 15/102 (14%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
++ + L RY + VLKG++ G + ++G +GSGK+T + + L +P+ G+I
Sbjct: 2 KLHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 1275 LIDGVDICSMGLKD-------------LRVKLSIIPQEPTLF 1303
+++G +I + KD LR +L+++ Q L+
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW 101
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 105 bits (263), Expect = 7e-26
Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 32/215 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661
+ +NLDI + + G G GKS+LL I G SG + + +
Sbjct: 16 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVG 75
Query: 662 YVSQTSWIQSG-SIRDNILYG-------KPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
V Q+ + S+ +N+ +G K + R ++ + L ++
Sbjct: 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK------ 129
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTV 772
LSGGQ+QR+ + R + + ++L D+P S +DA + E + +T+
Sbjct: 130 -----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 184
Query: 773 ILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
I VTH + D+I+VL+ G++ Q G EL
Sbjct: 185 IYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 219
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 65.0 bits (158), Expect = 5e-12
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
++L+ + + +V K I EG V VG +G GK+TL+ + L G +
Sbjct: 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
I + + ++ Q L+
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALY 84
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 105 bits (264), Expect = 7e-26
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 38/221 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
+R ++L++K + + + G G GK++ L I G G + +
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 659 ---SIAYVSQ-TSWIQSGSIRDNI-----LYGKPMD--KARYDKAIKACALDKDINNFDH 707
IA V Q + ++ DNI L P R + + L + +N
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAA 766
LSGGQ+QR+ L RA+ ++L D+P S +DA + E +
Sbjct: 139 -----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187
Query: 767 LEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T I VTH + DRI V+ G + Q G+ E+
Sbjct: 188 QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 61.1 bits (148), Expect = 1e-10
Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ L + + ++ ++ +G + ++G +G GKTT + + L EP+ G I
Sbjct: 4 VRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 1276 IDGVDICSMGLKDLR----VKLSIIPQEPTLF 1303
I + ++++ Q L+
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 105 bits (262), Expect = 1e-25
Identities = 42/208 (20%), Positives = 89/208 (42%), Gaps = 18/208 (8%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------I 660
L+G++ +I+ + + G GAGK++ L I I SG V ++G I
Sbjct: 18 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77
Query: 661 AYVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
+Y+ + + + + + + + + +I +I R
Sbjct: 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE----KIKDRVST 133
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779
S G +++ +ARA+ + + + D+P S +D A + A+ E T+++ +H +
Sbjct: 134 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 193
Query: 780 EFLSEV-DRILVLEGGQITQSGNYQELL 806
+ + DRI ++ G I ++G +EL
Sbjct: 194 LEVEFLCDRIALIHNGTIVETGTVEELK 221
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 67.3 bits (164), Expect = 1e-12
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
G + ++ L+ R +LKGI+ EG G++G G+GKTT + + L++P+ G
Sbjct: 1 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304
+ + G ++ ++R +S +P+E +R
Sbjct: 59 VTVFGKNVVEE-PHEVRKLISYLPEEAGAYR 88
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 102 bits (256), Expect = 7e-25
Identities = 44/218 (20%), Positives = 85/218 (38%), Gaps = 36/218 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659
L ++ +++ + + + G GAGKS+LL + G G++ G
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALH 73
Query: 660 IAYVSQTSWIQSG-SIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
AY+SQ + + + + A ALD ++G+
Sbjct: 74 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-----------DKLGRS 122
Query: 717 GLNLSGGQKQRIQLARAVYN-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
LSGG+ QR++LA V + L D+P +++D + L +
Sbjct: 123 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG 182
Query: 770 KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+++ +H + R +L+GG++ SG +E+L
Sbjct: 183 LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 220
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 64.6 bits (157), Expect = 6e-12
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
++L+ + R L ++ G + +VG G+GK+TL++ + + GSI
Sbjct: 4 MQLQDVAESTR------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQ 56
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTL-FRGSVRTNL 1311
G + + L + + + Q+ T F V L
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL 93
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 101 bits (253), Expect = 7e-25
Identities = 41/191 (21%), Positives = 79/191 (41%), Gaps = 18/191 (9%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAY 662
P L + + I+ + G G GK++LL I + + G + G I +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 74
Query: 663 VSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721
+ + + S+ D + + + +K AL+ ++ ++ ++ LS
Sbjct: 75 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES-------VEVLDLKKKLGELS 127
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781
G +R+QLA + +A+IY+ DDP A+D + + + EK VI+ + +
Sbjct: 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-- 185
Query: 782 LSEVDRILVLE 792
LS D L
Sbjct: 186 LSYCDVNENLH 196
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 69.2 bits (169), Expect = 1e-13
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 1215 RIELRQLKIRY-RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
++E+R L + Y +P VL+ IT T +G V G G GKTTL+ + ++P G
Sbjct: 2 KLEIRDLSVGYDKP----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 57
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDE 1321
I+ +GV I + K + II ++ G+ +
Sbjct: 58 IIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN 105
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 102 bits (255), Expect = 8e-25
Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 21/208 (10%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661
L ++L ++ + + G GAGK+ L I G SG + L G IA
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 662 YVSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720
+V Q S +++ N+ +G M K + K + A D I + + L L
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-------RNPLTL 128
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTHQV 779
SGG++QR+ LARA+ + I L D+P SA+D T + K TV+ +TH
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188
Query: 780 EFLSEV-DRILVLEGGQITQSGNYQELL 806
+ DRI V+ G++ Q G +E+
Sbjct: 189 TEARIMADRIAVVMDGKLIQVGKPEEIF 216
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 62.4 bits (151), Expect = 4e-11
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+ L +++ L ++ G ++G TG+GKT + + P G IL
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
+DG L + ++ + Q +LF
Sbjct: 59 LDGK--DVTDLSPEKHDIAFVYQNYSLF 84
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 99.8 bits (248), Expect = 8e-24
Identities = 52/216 (24%), Positives = 90/216 (41%), Gaps = 29/216 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L VN++I+ ++ + G GAGK++ + I G +G +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 659 --SIAYVSQ----TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
I V Q + + L M K K ++ A DI++ + E
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE 140
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKT 771
LSG Q+QR+ LARA+ D + L D+PFS +DA + + + T
Sbjct: 141 -------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 772 VILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+++V+H + + DR+ VL G++ Q G ++L
Sbjct: 194 LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 68.6 bits (167), Expect = 4e-13
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
RI ++ + ++ + L + G R G++G +G+GKTT + + L P+ G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1275 LIDGVDICSMGLKDLRV---KLSIIPQEPTLF 1303
D + S G + K+ ++ Q L+
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 91.6 bits (227), Expect = 4e-21
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 21/206 (10%)
Query: 616 VNLDIKWAQKI-AVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663
+N+D + + + G GAGKS L I G + G V L G I +V
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 664 SQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722
Q + S+ NI YG + ++ + + + + D ++ LSG
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERV-ERDRRVREMAEKLGIAHLLD-----RKPARLSG 129
Query: 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTHQVEF 781
G++QR+ LARA+ + L D+P SAVD T L E + ++ VTH +
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 782 LSEV-DRILVLEGGQITQSGNYQELL 806
+ + D + V+ G+I + G +EL
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKELF 215
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 58.1 bits (140), Expect = 1e-09
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301
++G TG+GK+ + + +V+P G + ++G DI L R + +PQ+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGFVPQDYA 80
Query: 1302 LFR 1304
LF
Sbjct: 81 LFP 83
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 75.0 bits (183), Expect = 7e-16
Identities = 23/196 (11%), Positives = 53/196 (27%), Gaps = 24/196 (12%)
Query: 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPM 684
KI + G G GK++L+ I+ + K + +RD +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEE---------------VRDPETKKRTG 46
Query: 685 DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
+ + K K + + + A + + + D
Sbjct: 47 FRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIID 106
Query: 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ--SGNY 802
+ ++ + + V+ + V I L G + + N
Sbjct: 107 EI-GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENR 165
Query: 803 QELLLAGTAFEQLVNA 818
+L E +++
Sbjct: 166 DVIL------EDILSL 175
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 58.5 bits (140), Expect = 3e-10
Identities = 8/82 (9%), Positives = 25/82 (30%)
Query: 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304
++ + G G GKTTL+ + + + V + ++ ++
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 1305 GSVRTNLDPLGLYSDDEIWKVS 1326
+ + + ++
Sbjct: 62 KFFTSKKLVGSYGVNVQYFEEL 83
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.9 bits (123), Expect = 6e-08
Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 1/117 (0%)
Query: 1246 VGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG 1305
V + G G GKTTLI +++ +G + + G + + + +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 1306 SVRTNLDPL-GLYSDDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRIIKTKQLVTVF 1361
+ ++ + + D + +I + +F
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELF 120
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 51.5 bits (121), Expect = 4e-07
Identities = 29/300 (9%), Positives = 85/300 (28%), Gaps = 1/300 (0%)
Query: 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFT 334
+ I I +L + LL ++ + + + + + +
Sbjct: 14 FKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITS 73
Query: 335 QRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW 394
+ S SG + + + K+ + +
Sbjct: 74 YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGA 133
Query: 395 FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDE 454
+ ++F ++ +VL I + +K + +
Sbjct: 134 LITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQ 193
Query: 455 RLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA-YGTVIYWMSPTI 513
S ++L K + + +E + K + + +I ++
Sbjct: 194 VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLA 253
Query: 514 ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573
++ V++ + L A TI V +++ ++ P++ + + + + + A L
Sbjct: 254 LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL 313
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 43.7 bits (101), Expect = 9e-05
Identities = 48/307 (15%), Positives = 108/307 (35%), Gaps = 8/307 (2%)
Query: 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNY------SNRGEENLQEGLSIVGCLIITK 328
Y I +++ ++ PLL+ ++ E+ ++I L I
Sbjct: 12 YKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFV 71
Query: 329 VVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRM 388
+V + + ++ + ++ + +Y LS+ + G++++ + D +
Sbjct: 72 IVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQT 131
Query: 389 GEFPFWFHLTWSLAL-QLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSE 447
+F + L + +A+ ++F + L L +F L F L+K E
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 448 FMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIY 507
A E E + + ++K + E+ + + + AY
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 508 WMSPTIISS-VIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSF 566
I VI +G L S + T+ + L + P+R + + + + Q S
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASM 311
Query: 567 DRINAFL 573
DR+ +
Sbjct: 312 DRVFQLI 318
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 39.1 bits (89), Expect = 0.003
Identities = 43/309 (13%), Positives = 96/309 (31%), Gaps = 13/309 (4%)
Query: 901 LLCLGVLAQSGFVGLQAAATYWLAYAI------------QIPKITSGILIGVYAGVSTAS 948
+ ++ G+ + YAI + + +
Sbjct: 15 RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVR 74
Query: 949 AVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFD 1008
+ R + A K N + F+ + VG++++R+ +D+
Sbjct: 75 PPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDF 134
Query: 1009 IPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGT 1068
I ++ + ++ + IM F+ ++ + A+F + R+L R
Sbjct: 135 ILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQ 194
Query: 1069 TKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFH-TNGVMEWLILRVEA 1127
A V + E QG+ +++F + D +N+ K + T
Sbjct: 195 ALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTV 254
Query: 1128 LQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERI 1187
+ + L G + G + + Y L G L + L S++R+
Sbjct: 255 TDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRV 314
Query: 1188 KQFMHIPPE 1196
Q + +
Sbjct: 315 FQLIDEDYD 323
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.1 bits (92), Expect = 0.002
Identities = 7/62 (11%), Positives = 22/62 (35%)
Query: 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDR 787
+ A Y + ++ D+ +A+D + I+++ + + D
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDA 404
Query: 788 IL 789
++
Sbjct: 405 LV 406
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Score = 39.9 bits (92), Expect = 0.002
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM 1284
RVG+ G G GK+T I AL L+ AG + + VD S
Sbjct: 53 RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSST 92
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1361 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.97 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.96 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.95 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.95 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.95 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.94 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.93 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.93 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.93 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.91 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.89 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.78 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.77 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.77 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.76 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.76 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.76 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.75 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.73 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.72 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.72 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.72 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.71 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.68 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.57 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.56 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.46 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.23 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.09 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.56 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.3 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.19 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.69 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.05 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.53 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.32 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.08 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 95.92 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.7 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.43 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.33 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.23 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.1 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.02 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.01 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.99 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 94.98 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.74 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.7 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.61 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.24 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 94.16 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.14 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.98 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 93.97 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 93.92 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.88 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.88 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 93.88 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 93.79 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.76 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.75 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.68 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.56 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 93.56 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.52 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.49 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.45 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.43 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.34 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.31 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.2 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.15 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 93.09 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.08 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.04 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 92.91 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 92.9 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 92.63 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 92.59 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.52 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 92.46 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.43 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 92.4 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.37 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 92.31 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 92.15 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.05 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.99 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.96 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 91.89 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.84 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.73 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 91.5 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.44 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.36 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 91.28 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 91.14 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.14 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.12 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.12 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 91.12 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.06 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 90.95 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 90.89 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.77 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 90.69 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 90.57 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 90.54 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.49 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 90.48 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 90.43 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 90.38 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.34 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.33 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 90.2 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 90.09 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 90.03 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 89.91 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 89.87 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 89.84 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 89.78 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 89.73 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 89.73 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.72 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.7 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 89.61 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.54 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 89.52 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 89.44 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 89.37 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 89.32 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.29 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.24 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 89.13 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.98 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.98 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 88.97 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 88.91 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 88.88 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 88.77 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 88.75 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.74 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.73 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 88.63 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 88.55 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 88.43 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.41 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 88.41 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.36 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 88.36 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 88.32 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 88.12 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.09 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 88.09 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 88.09 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.0 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 87.97 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 87.94 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 87.86 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 87.84 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 87.83 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 87.79 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 87.79 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.64 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.59 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.59 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 87.51 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 87.48 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 87.36 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 87.24 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 87.2 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 87.15 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 87.11 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 87.07 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 87.06 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 87.01 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 86.96 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 86.76 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 86.68 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 86.66 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 86.64 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 86.63 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 86.58 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 86.49 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 86.43 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 86.4 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 86.4 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 86.35 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 86.33 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 86.31 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 86.23 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 86.14 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 86.11 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 85.98 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 85.61 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 85.58 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 85.49 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 85.47 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 85.42 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 85.38 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.28 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 85.15 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 84.96 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 84.87 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 84.87 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 84.86 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 84.84 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 84.83 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 84.8 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 84.79 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 84.7 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 84.65 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 84.63 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 84.6 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 84.52 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 84.52 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 84.43 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 84.41 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 84.4 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 84.35 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 84.35 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 84.34 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 84.2 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 84.2 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 84.11 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 83.97 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 83.96 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 83.93 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 83.9 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 83.77 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 83.72 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.68 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 83.66 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 83.62 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 83.56 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 83.46 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 83.42 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 83.33 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 83.3 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 83.28 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 83.25 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 83.21 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 83.18 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.15 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 83.09 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.09 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 82.92 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 82.74 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 82.69 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 82.68 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 82.59 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 82.57 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 82.55 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 82.48 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 82.47 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 82.43 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 82.37 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 82.34 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 82.21 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 81.9 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 81.86 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 81.77 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 81.69 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 81.64 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 81.44 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 81.31 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 81.26 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 81.01 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 80.89 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 80.88 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 80.83 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 80.82 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 80.76 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 80.76 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 80.74 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 80.64 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 80.59 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 80.43 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 80.4 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 80.32 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 80.27 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 80.23 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 80.13 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 80.11 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=419.49 Aligned_cols=229 Identities=30% Similarity=0.512 Sum_probs=213.1
Q ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------
Q ss_conf 35899848998337972799998732211488518808999588998977899998299658871899929---------
Q 000671 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1361)
Q Consensus 588 ~~~~~~~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g--------- 658 (1361)
.+..++.|+++|++|+|+.+ ..++|+|+||++++|++++|+|++|||||||+++|+|.+++.+|+|.++|
T Consensus 10 l~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 88 (255)
T d2hyda1 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 88 (255)
T ss_dssp CCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHH
T ss_pred CCCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHH
T ss_conf 77778879999889995999-97606443899839989999889998099999999712786300015399875307888
Q ss_pred ----EEEEEECCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ----3999925776898888899623999-99899999999823168882199999741368988779589999999999
Q 000671 659 ----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1361)
Q Consensus 659 ----~iayv~Q~pwi~~~TireNIlfg~~-~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA 733 (1361)
+++||+|+|+++++||+|||.||.+ .++++..++++.|++.++++.+|+|++|.+||+|.+||||||||++||||
T Consensus 89 ~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARa 168 (255)
T d2hyda1 89 SLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 168 (255)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 86341456510156899879999851586799999999999969799997362420103338889849999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHH
Q ss_conf 80499899982888896999999999999978159958999826702784259599993985879518689985183389
Q 000671 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1361)
Q Consensus 734 ~y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l~~~d~I~vl~~G~I~~~Gt~~el~~~~~~~~ 813 (1361)
++++|++++||||+|+||+++++.|++ .+....+++|+|+|||+++.+..||+|++|++|+|++.|+++||+++++.|.
T Consensus 169 l~~~p~ililDEpts~LD~~t~~~i~~-~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~ 247 (255)
T d2hyda1 169 FLNNPPILILDEATSALDLESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYE 247 (255)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHH
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHH
T ss_conf 855998999837654479779999999-9998753888999968999998599999998999999889999986884999
Q ss_pred HHHHH
Q ss_conf 99997
Q 000671 814 QLVNA 818 (1361)
Q Consensus 814 ~l~~~ 818 (1361)
++.+.
T Consensus 248 ~l~~~ 252 (255)
T d2hyda1 248 HLYSI 252 (255)
T ss_dssp HHHTT
T ss_pred HHHHH
T ss_conf 99997
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=414.45 Aligned_cols=224 Identities=30% Similarity=0.469 Sum_probs=209.9
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------EE
Q ss_conf 48998337972799998732211488518808999588998977899998299658871899929-------------39
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g-------------~i 660 (1361)
.|+|+|++|+|+++ .+++|+|+||++++|+.++|+|++|||||||+++|+|.++|.+|+|.++| ++
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEEECCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99925776898888899623999-99899999999823168882199999741368988779589999999999804998
Q 000671 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1361)
Q Consensus 661 ayv~Q~pwi~~~TireNIlfg~~-~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y~~~~ 739 (1361)
+||+|+|+++++||+|||.++.+ .+.+++.++++.|.+.++++.+|+|+.|.+|++|.+||||||||++||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHHHH
Q ss_conf 999828888969999999999999781599589998267027842595999939858795186899851-8338999997
Q 000671 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA-GTAFEQLVNA 818 (1361)
Q Consensus 740 i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l~~~d~I~vl~~G~I~~~Gt~~el~~~-~~~~~~l~~~ 818 (1361)
|++||||+|+||+.+++.|++. +....+++|+|+|||+++.+..||+|++|++|+|++.|+|+|++++ ++.|.++.+.
T Consensus 160 ililDEpts~LD~~~~~~i~~~-l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHH-HHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHH-HHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 3556477655598999999999-999858998999978899998499999998999999889999982998789999998
Q ss_pred H
Q ss_conf 3
Q 000671 819 H 819 (1361)
Q Consensus 819 ~ 819 (1361)
+
T Consensus 239 Q 239 (241)
T d2pmka1 239 Q 239 (241)
T ss_dssp H
T ss_pred H
T ss_conf 1
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=409.15 Aligned_cols=227 Identities=28% Similarity=0.466 Sum_probs=212.8
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------
Q ss_conf 99848998337972799998732211488518808999588998977899998299658871899929------------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1361)
Q Consensus 591 ~~~~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g------------ 658 (1361)
..+.|+++|++|+|+.+ +.++|+|+||++++|+.++|+||+|||||||+++|+|.++|.+|+|.++|
T Consensus 10 ~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 88 (253)
T ss_dssp CCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHH
T ss_conf 83079999889992999-97635332899859999999999998599999998621688846898788012111066542
Q ss_pred -EEEEEECCCCCCCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf -3999925776898888899623999--9989999999982316888219999974136898877958999999999980
Q 000671 659 -SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 659 -~iayv~Q~pwi~~~TireNIlfg~~--~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y 735 (1361)
.++|++|+|+++++|+++|+.++.+ .+++++.++++.|++.++++.+|+|.+|.+|++|.+|||||||||+||||++
T Consensus 89 ~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred HEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 06879950254478620243320572208999999999998179999735544101434888984999999999999995
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
Q ss_conf 49989998288889699999999999997815995899982670278425959999398587951868998518338999
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1361)
Q Consensus 736 ~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l~~~d~I~vl~~G~I~~~Gt~~el~~~~~~~~~l 815 (1361)
++|++++||||+|+||+.+.+.|++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++||+++++.|.++
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l 247 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 247 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHH-HHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
T ss_conf 4998899516444589889999999-998752278899998879999859999999899999988999998689399999
Q ss_pred HHHH
Q ss_conf 9973
Q 000671 816 VNAH 819 (1361)
Q Consensus 816 ~~~~ 819 (1361)
.+.+
T Consensus 248 ~~~Q 251 (253)
T d3b60a1 248 HKMQ 251 (253)
T ss_dssp HHHT
T ss_pred HHHC
T ss_conf 9972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=404.55 Aligned_cols=226 Identities=26% Similarity=0.401 Sum_probs=208.6
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------
Q ss_conf 99848998337972799998732211488518808999588998977899998299658871899929------------
Q 000671 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1361)
Q Consensus 591 ~~~~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g------------ 658 (1361)
.++.|+++|++|+|+..++.++|+|+||++++|+.++|+||+|||||||+++|+|.++|.+|+|.++|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred CCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHH
T ss_conf 53369999989988999999767443899849989999999998499999998614378768998899853110137888
Q ss_pred -EEEEEECCCCCCCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf -3999925776898888899623999--9989999999982316888219999974136898877958999999999980
Q 000671 659 -SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 659 -~iayv~Q~pwi~~~TireNIlfg~~--~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y 735 (1361)
.++||+|+|+++++||+|||.+|.. .+.++..+..+.+++...++.+|+|.+|.+|++|.+||||||||++||||++
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCC
T ss_conf 77654045650027634655454210130278899999999899999856121113675167668954704899860445
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHH
Q ss_conf 49989998288889699999999999997815--9958999826702784259599993985879518689985183389
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1361)
Q Consensus 736 ~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l--~~kT~ilvth~~~~l~~~d~I~vl~~G~I~~~Gt~~el~~~~~~~~ 813 (1361)
++|+|++||||||+||+++...|++.. .... .++|+|+|||+++.+..||+|++|++|+|++.|+++||+++++.|.
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~l-~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~ 246 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQLL-YESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYW 246 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHH-HTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHH
T ss_conf 687078716757656853689999999-9976506989999959799998599999998999999889999985975889
Q ss_pred HHHH
Q ss_conf 9999
Q 000671 814 QLVN 817 (1361)
Q Consensus 814 ~l~~ 817 (1361)
++++
T Consensus 247 ~l~~ 250 (251)
T d1jj7a_ 247 AMVQ 250 (251)
T ss_dssp HHHC
T ss_pred HHHC
T ss_conf 9962
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=395.16 Aligned_cols=219 Identities=40% Similarity=0.707 Sum_probs=203.5
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCC
Q ss_conf 84899833797279999873221148851880899958899897789999829965887189992939999257768988
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1361)
Q Consensus 593 ~~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~pwi~~~ 672 (1361)
..|.++|.+| . ..|+|+|+||++++|++++|+||+|||||||+++|+|++++++|+|.++|+++|++|+||++++
T Consensus 37 ~~i~~~~~~~--~---g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~ 111 (281)
T d1r0wa_ 37 NNVSFSHLCL--V---GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPG 111 (281)
T ss_dssp ---CHHHHHH--T---TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSE
T ss_pred CCEEEEECCC--C---CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCC
T ss_conf 9679997698--9---9767737599985999999998999829999999957974788289999999998164302676
Q ss_pred CHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
Q ss_conf 88899623999998999999998231688821999997413689887795899999999998049989998288889699
Q 000671 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1361)
Q Consensus 673 TireNIlfg~~~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y~~~~i~lLDdp~salD~ 752 (1361)
||+|||.||..+++.++.++++.|.+..|+..+|+|+.|.+|++|.+||||||||++||||++++|+|++||||+|+||+
T Consensus 112 tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~ 191 (281)
T d1r0wa_ 112 TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 191 (281)
T ss_dssp EHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCH
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCH
T ss_conf 03214203334560579999999776999984612332355554237799999999999999869635133385544898
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
Q ss_conf 9999999999978159958999826702784259599993985879518689985183389999
Q 000671 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816 (1361)
Q Consensus 753 ~~~~~i~~~~i~~~l~~kT~ilvth~~~~l~~~d~I~vl~~G~I~~~Gt~~el~~~~~~~~~l~ 816 (1361)
.+.+.+++.++....+++|+|++||+++.+..||+|++|++|+|++.|+++||+...+.|...+
T Consensus 192 ~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~ 255 (281)
T d1r0wa_ 192 FTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKL 255 (281)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHH
T ss_conf 9999999999988628999999925289998599999998999999878999960594899987
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=401.22 Aligned_cols=222 Identities=26% Similarity=0.472 Sum_probs=207.2
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------EEE
Q ss_conf 8998337972799998732211488518808999588998977899998299658871899929-------------399
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1361)
Q Consensus 595 I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g-------------~ia 661 (1361)
++++|++|+|+.+ +++|+|+||++++|++++|+||+|||||||+++|+|.++|.+|+|.++| +++
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 7999889987999--84142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EEECCCCCCCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9925776898888899623999--99899999999823168882199999741368988779589999999999804998
Q 000671 662 YVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1361)
Q Consensus 662 yv~Q~pwi~~~TireNIlfg~~--~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y~~~~ 739 (1361)
||+|+|+++++||+||+.++.. .+++...++++.+.+..++..+|+|.+|.+||+|.+|||||||||+||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHH
Q ss_conf 99982888896999999999999978159958999826702784259599993985879518689985183389999973
Q 000671 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819 (1361)
Q Consensus 740 i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l~~~d~I~vl~~G~I~~~Gt~~el~~~~~~~~~l~~~~ 819 (1361)
|++||||+|+||+++.+.|++ .+....+++|+|++||+++.+..||+|++|++|+|++.|+++||+++++.|.++++.+
T Consensus 160 ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQK-ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHH-HHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred EEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHH
T ss_conf 999658865569889999988-7888717998999978799998499999998999999999999986896999999998
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=6.1e-36 Score=301.99 Aligned_cols=202 Identities=28% Similarity=0.357 Sum_probs=173.0
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEE
Q ss_conf 48998337972799998732211488518808999588998977899998299658871899929-----------3999
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1361)
Q Consensus 594 ~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g-----------~iay 662 (1361)
.|+++|.+++|+. ..+|+|+||++++||.++++||+|||||||+++|.|.++|++|+|.++| .++|
T Consensus 6 ~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~ 82 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 82 (239)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEE
T ss_conf 4999879999999---9998130678879989999999998299999999758999878799916413547700015899
Q ss_pred EECCCCCC-CCCHHHHHHCCCC---CCH----HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 92577689-8888899623999---998----999999998231688821999997413689887795899999999998
Q 000671 663 VSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1361)
Q Consensus 663 v~Q~pwi~-~~TireNIlfg~~---~d~----~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~ 734 (1361)
|+|+|-++ +.|++||+.|+.. +++ ++.+++++.+.|.+... .....||||||||++||||+
T Consensus 83 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGGq~QRvaiAraL 151 (239)
T d1v43a3 83 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-----------RYPAQLSGGQRQRVAVARAI 151 (239)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTT-----------SCTTTCCSSCHHHHHHHHHH
T ss_pred EEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHC-----------CCHHHCCHHHHHHHHHHHHH
T ss_conf 8003353422209999999998739999999999999998759855660-----------99546999998899997664
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 049989998288889699999999999997815-99589998267027842-5959999398587951868998518
Q 000671 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1361)
Q Consensus 735 y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l-~~kT~ilvth~~~~l~~-~d~I~vl~~G~I~~~Gt~~el~~~~ 809 (1361)
..+|++++||||||+||+.+...+.+....-.. .++|+|++||+++.... ||+|++|++|+|++.|+.+|+..+.
T Consensus 152 ~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 152 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 04998243068866689899989999999998731980799948999999869999999899999985999998689
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.2e-36 Score=304.19 Aligned_cols=203 Identities=25% Similarity=0.352 Sum_probs=174.4
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 48998337972799998732211488518808999588998977899998299658871899929---------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 594 ~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g--------------- 658 (1361)
.|+++|.+++|+.+ +..+|+|+||++++||.++|+||+|||||||+++|.|..+|++|+|.++|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred -EEEEEECCCCCCC-CCHHHHHHCCCC---CC----HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -3999925776898-888899623999---99----89999999982316888219999974136898877958999999
Q 000671 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 -~iayv~Q~pwi~~-~TireNIlfg~~---~d----~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~ 729 (1361)
+++||+|+|-+++ .|++|||.|+.. .+ +++.+++++.+.|.+..+. +...||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH-----------FPRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHC-----------CHHHCCHHHHHHHH
T ss_conf 4514773043346666577776655676137999999999999866591766648-----------95459999985899
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCCEEEEECCCCHHH-HHCCEEEEEECCEEEEECCHHHHH
Q ss_conf 9999804998999828888969999999999999781-5-995899982670278-425959999398587951868998
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-L-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 730 LARA~y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~-l-~~kT~ilvth~~~~l-~~~d~I~vl~~G~I~~~Gt~~el~ 806 (1361)
||||+..+|+++++|||+++||+.+...+.+.. ..+ . .+.|+|++||+++.+ ..||+|++|++|+|++.|+.+|+.
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i-~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALV-KEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHH-HHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 875776046614544786679989988998999-9998635987999979999999969999999899999986999998
Q ss_pred HCC
Q ss_conf 518
Q 000671 807 LAG 809 (1361)
Q Consensus 807 ~~~ 809 (1361)
.+.
T Consensus 230 ~~P 232 (242)
T d1oxxk2 230 DNP 232 (242)
T ss_dssp HSC
T ss_pred HCC
T ss_conf 689
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.3e-36 Score=304.10 Aligned_cols=200 Identities=27% Similarity=0.411 Sum_probs=172.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEEE
Q ss_conf 8998337972799998732211488518808999588998977899998299658871899929-----------39999
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g-----------~iayv 663 (1361)
|+++|.+++|+. ..+|+|+||++++||.++++||+|||||||+++|.|..+|++|+|.++| .++||
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 77 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 77 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEE
T ss_pred CEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEE
T ss_conf 999999999899---99981117788699899999899982999999996587888888999999778886444322234
Q ss_pred ECCCCCC-CCCHHHHHHCCCCCC-------HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 2577689-888889962399999-------89999999982316888219999974136898877958999999999980
Q 000671 664 SQTSWIQ-SGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1361)
Q Consensus 664 ~Q~pwi~-~~TireNIlfg~~~d-------~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y 735 (1361)
+|+|-++ +.|++||+.|+.... +++..++++...|.+..+. ...+||||||||++||||+.
T Consensus 78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-----------~~~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp CSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHC-----------CHHHCCHHHHHHHHHHHHHH
T ss_conf 3342026433378897899987599889999999999975788656648-----------96569999999999999970
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 499899982888896999999999999978-1599589998267027842-595999939858795186899851
Q 000671 736 NDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 736 ~~~~i~lLDdp~salD~~~~~~i~~~~i~~-~l~~kT~ilvth~~~~l~~-~d~I~vl~~G~I~~~Gt~~el~~~ 808 (1361)
.+|++++||||+++||+.+.+.|.+....- .-.++|+|++||+++.... ||+|++|++|+|++.|+.+|+.++
T Consensus 147 ~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 147 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 399889975888788988998999999999874298799994899999996999999979999998089999738
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=7.2e-36 Score=301.38 Aligned_cols=202 Identities=26% Similarity=0.344 Sum_probs=172.4
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 48998337972799998732211488518808999588998977899998299658871899929---------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 594 ~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g--------------- 658 (1361)
.|+++|.+++|+. ..+++|+||++++||.++++||+|||||||+++|.|.++|++|+|.++|
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 1899869999899---9998560668869989999999998099999999648788989899999980356644424532
Q ss_pred --EEEEEECCCCCCC-CCHHHHHHCCC---CCC----HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf --3999925776898-88889962399---999----8999999998231688821999997413689887795899999
Q 000671 659 --SIAYVSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 659 --~iayv~Q~pwi~~-~TireNIlfg~---~~d----~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi 728 (1361)
.++||+|+|-+++ .|++||+.|+. ..+ +++..++++.+.|.+... ....+||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~-----------~~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHC-----------CCHHHCCHHHHHHH
T ss_conf 2551200221222310116676330687729998999999999998759966762-----------99334999999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 999998049989998288889699999999999997815-99589998267027842-5959999398587951868998
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1361)
Q Consensus 729 ~LARA~y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l-~~kT~ilvth~~~~l~~-~d~I~vl~~G~I~~~Gt~~el~ 806 (1361)
+||||+..+|++++||||+++||+.+...|.+....-.. .+.|+|++||+++.+.. ||+|++|++|+|++.|+.+|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999826998898258876569899989999999998636988999959999999969999999899999985999998
Q ss_pred HCC
Q ss_conf 518
Q 000671 807 LAG 809 (1361)
Q Consensus 807 ~~~ 809 (1361)
.+.
T Consensus 229 ~~P 231 (240)
T d1g2912 229 DKP 231 (240)
T ss_dssp HSC
T ss_pred HCC
T ss_conf 289
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=9.8e-36 Score=300.33 Aligned_cols=199 Identities=28% Similarity=0.415 Sum_probs=172.7
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEEE
Q ss_conf 8998337972799998732211488518808999588998977899998299658871899929-----------39999
Q 000671 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1361)
Q Consensus 595 I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g-----------~iayv 663 (1361)
|+++|.+++|+. .+|+|+||++++||.++++||+|||||||+++|.|.++|++|+|.++| .++|+
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v 77 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEE
T ss_conf 899989999499----7884337898799899999899982999999996476888788999567346521657405615
Q ss_pred ECCCCCCC-CCHHHHHHCCCC----CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 25776898-888899623999----9989999999982316888219999974136898877958999999999980499
Q 000671 664 SQTSWIQS-GSIRDNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 664 ~Q~pwi~~-~TireNIlfg~~----~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y~~~ 738 (1361)
+|++-++. .|++||+.|+.. -++++..++++...+.+..+ .+..+||||||||++||||+..+|
T Consensus 78 ~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGG~~QRvaiAraL~~~P 146 (229)
T d3d31a2 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALVTNP 146 (229)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH-----------CCHHHCCHHHHCCHHHHHHHHCCC
T ss_conf 121111746657788888776405538999999999825655575-----------895547999840140304344367
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 8999828888969999999999999781-599589998267027842-595999939858795186899851
Q 000671 739 DIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 739 ~i~lLDdp~salD~~~~~~i~~~~i~~~-l~~kT~ilvth~~~~l~~-~d~I~vl~~G~I~~~Gt~~el~~~ 808 (1361)
+++|||||+|+||+++...+.+....-. ..+.|+|++||+++.... ||+|++|++|+|++.|+.+|+.++
T Consensus 147 ~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 714434787679989999999999999864796899974999999996999999979999998699999868
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.5e-36 Score=301.72 Aligned_cols=203 Identities=26% Similarity=0.358 Sum_probs=171.3
Q ss_pred EEEEEEEEEECCCCC-CCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 899833797279999-8732211488518808999588998977899998299658871899929---------------
Q 000671 595 VKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 595 I~~~~~~f~w~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g--------------- 658 (1361)
|+++|.+++|+.+.. ..+|+|+||++++||.++|+||+|||||||+++|.|..+|++|+|.++|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred -EEEEEECCCCCCC-CCHHHHHHCC-----CCCC--HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -3999925776898-8888996239-----9999--89999999982316888219999974136898877958999999
Q 000671 659 -SIAYVSQTSWIQS-GSIRDNILYG-----KPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1361)
Q Consensus 659 -~iayv~Q~pwi~~-~TireNIlfg-----~~~d--~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~ 729 (1361)
+++||+|+|-+++ .|++|||.|+ .+-+ +++..+.++.+.|.+..+ .....||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~-----------~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-----------SYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTS-----------SCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH-----------CCHHHCCHHHHHHHH
T ss_conf 166430225222799649999999999849998999999999999769903554-----------894349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99998049989998288889699999999999997815-99589998267027842-59599993985879518689985
Q 000671 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1361)
Q Consensus 730 LARA~y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l-~~kT~ilvth~~~~l~~-~d~I~vl~~G~I~~~Gt~~el~~ 807 (1361)
||||+..+|+++++|||+++||+.+...|++....-.. .+.|+|++||+++.+.. ||+|++|++|+|++.|+.+|+.+
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred C
Q ss_conf 1
Q 000671 808 A 808 (1361)
Q Consensus 808 ~ 808 (1361)
+
T Consensus 231 ~ 231 (240)
T d3dhwc1 231 H 231 (240)
T ss_dssp S
T ss_pred C
T ss_conf 8
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.3e-34 Score=291.32 Aligned_cols=211 Identities=25% Similarity=0.397 Sum_probs=175.8
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 48998337972799998732211488518808999588998977899998299658871899929---------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 594 ~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g--------------- 658 (1361)
.++++|.+++|.. ..+|+|+||++++||.++|+|++|||||||+++|.|..++++|+|.++|
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 6999978999899---9988150668869979999989998299999999747667899779999993367752000023
Q ss_pred -----------EEEEEECCCCCCC-CCHHHHHHCC----CCCC----HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf -----------3999925776898-8888996239----9999----899999999823168882199999741368988
Q 000671 659 -----------SIAYVSQTSWIQS-GSIRDNILYG----KPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1361)
Q Consensus 659 -----------~iayv~Q~pwi~~-~TireNIlfg----~~~d----~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~ 718 (1361)
+++||+|+|-+++ .|+.||+.++ ...+ .++..++++.+.|.+.... ....
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG----------KYPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT----------SCGG
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHC----------CCCC
T ss_conf 517679997454489983323141101021365657876299989999999999998299524430----------6822
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH-CCEEEEEECCEEE
Q ss_conf 779589999999999804998999828888969999999999999781599589998267027842-5959999398587
Q 000671 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1361)
Q Consensus 719 ~LSGGQkqRi~LARA~y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l~~-~d~I~vl~~G~I~ 797 (1361)
+||||||||++||||+..+|+++++|||+++||+.+.+.|++....-.-+++|+|+|||+++.+.. ||+|++|++|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 05677888989999984399878852455568878888998765541036883389948999999869999999799999
Q ss_pred EECCHHHHHHCCC-H-HHHHHH
Q ss_conf 9518689985183-3-899999
Q 000671 798 QSGNYQELLLAGT-A-FEQLVN 817 (1361)
Q Consensus 798 ~~Gt~~el~~~~~-~-~~~l~~ 817 (1361)
+.|+.+|++.+.. . ..+++.
T Consensus 229 ~~g~~~ev~~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 229 EEGDPEQVFGNPQSPRLQQFLK 250 (258)
T ss_dssp EEECHHHHHHSCCSHHHHHHHH
T ss_pred EECCHHHHHHCCCCHHHHHHHH
T ss_conf 9849999983899999999881
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.7e-35 Score=296.74 Aligned_cols=201 Identities=26% Similarity=0.364 Sum_probs=161.8
Q ss_pred EEEEEEEEEECCCCC-CCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 899833797279999-8732211488518808999588998977899998299658871899929---------------
Q 000671 595 VKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1361)
Q Consensus 595 I~~~~~~f~w~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g--------------- 658 (1361)
|+++|.+++|+.... ..+|+|+||++++||.++|+||+|||||||+++|.|..+|++|+|.++|
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred --EEEEEECCCCCC-CCCHHHHHHCCC------CCC-HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf --399992577689-888889962399------999-8999999998231688821999997413689887795899999
Q 000671 659 --SIAYVSQTSWIQ-SGSIRDNILYGK------PMD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1361)
Q Consensus 659 --~iayv~Q~pwi~-~~TireNIlfg~------~~d-~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi 728 (1361)
.++||+|+|-++ +.|++||+.++. .++ +++.+++.+... +-.+++. .......+|||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~L~~~---~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK----MAELEER---FANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHH----HTTCCGG---GTTCCGGGSCHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----HHCHHHH---HHCCCHHHCCHHHHHHH
T ss_conf 5557788041241768668887757888722478999999999999887----6242345---53488023899999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 99999804998999828888969999999999999781-599589998267027842595999939858795186
Q 000671 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802 (1361)
Q Consensus 729 ~LARA~y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~-l~~kT~ilvth~~~~l~~~d~I~vl~~G~I~~~Gt~ 802 (1361)
+||||+..+|++++||||||+||+.+...+++....-. -.++|+|+|||+++....||+|++|++|+|++.|+.
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.1e-33 Score=283.94 Aligned_cols=207 Identities=25% Similarity=0.363 Sum_probs=168.4
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------
Q ss_conf 9848998337972799998732211488518808999588998977899998299658871899929-------------
Q 000671 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1361)
Q Consensus 592 ~~~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g------------- 658 (1361)
+..++++|.+++|.. ..+|+|+||++++||.++++||+|||||||+++|.|.++|++|+|.++|
T Consensus 4 d~~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r 80 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp SEEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHH
T ss_conf 607999618999899---88883025788899799999999985999999996788888038984244344660888887
Q ss_pred -EEEEEECCCCCCC-CCHHHHHHCCCC--CCHHHHHHHH-HHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf -3999925776898-888899623999--9989999999-9823168882199999741368988779589999999999
Q 000671 659 -SIAYVSQTSWIQS-GSIRDNILYGKP--MDKARYDKAI-KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1361)
Q Consensus 659 -~iayv~Q~pwi~~-~TireNIlfg~~--~d~~~y~~vi-~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA 733 (1361)
.++|++|++-+++ .|++||+.++.. .+.+...+.+ +...+...++.. ......+||||||||+++|||
T Consensus 81 ~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~LSGG~~Qrv~iAra 153 (240)
T d1ji0a_ 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER-------LKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTT-------TTSBSSSSCHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHH-------HHCCHHHCCHHHHHHHHHHHH
T ss_conf 4235567655457763699999988873278889999999999874176888-------758543389999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH-HHCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 8049989998288889699999999999997815995899982670278-42595999939858795186899851
Q 000671 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 734 ~y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l-~~~d~I~vl~~G~I~~~Gt~~el~~~ 808 (1361)
+..+|++++||||+++||+...+.+++..-.-..+|+|+|++||+++.+ ..||+|++|++|+|++.|+++|+.++
T Consensus 154 L~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 9829987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.1e-34 Score=285.88 Aligned_cols=200 Identities=22% Similarity=0.359 Sum_probs=166.2
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 489983379727999987322114885188089995889989778999982996588718999293--------------
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------- 659 (1361)
Q Consensus 594 ~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~-------------- 659 (1361)
-++++|.+.+|+. ..+|+|+||++++||.++++||+|||||||+++|.|.+++++|+|.++|.
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 6999778999799---6887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEEECCCCC-CCCCHHHHHHCCCC-----------------CCHHHHH---HHHHHHCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 9999257768-98888899623999-----------------9989999---9999823168882199999741368988
Q 000671 660 IAYVSQTSWI-QSGSIRDNILYGKP-----------------MDKARYD---KAIKACALDKDINNFDHGDLTEIGQRGL 718 (1361)
Q Consensus 660 iayv~Q~pwi-~~~TireNIlfg~~-----------------~d~~~y~---~vi~~c~L~~dl~~lp~GD~T~IGe~G~ 718 (1361)
++|++|+|-+ .+.|++||+.+|.. -+++..+ ++++...+... ...+..
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~ 149 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-----------YDRKAG 149 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-----------TTSBGG
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH-----------CCCCHH
T ss_conf 872577642478874232143013330345045665421353289999999999876196302-----------059535
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH-HHCCEEEEEECCEEE
Q ss_conf 7795899999999998049989998288889699999999999997815995899982670278-425959999398587
Q 000671 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL-SEVDRILVLEGGQIT 797 (1361)
Q Consensus 719 ~LSGGQkqRi~LARA~y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l-~~~d~I~vl~~G~I~ 797 (1361)
+||||||||++||||+..+|++++||||+++||+...+.|++....-.-+|+|+|++||+++.+ ..||+|++|++|+|+
T Consensus 150 ~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv 229 (254)
T d1g6ha_ 150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 229 (254)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 69918888999999997592723243976569999999999999999978998999947699999869999999699899
Q ss_pred EECCHHHHHH
Q ss_conf 9518689985
Q 000671 798 QSGNYQELLL 807 (1361)
Q Consensus 798 ~~Gt~~el~~ 807 (1361)
..|+++|+.+
T Consensus 230 ~~g~~~e~~~ 239 (254)
T d1g6ha_ 230 AEGRGEEEIK 239 (254)
T ss_dssp EEEESHHHHH
T ss_pred EEECHHHHHH
T ss_conf 9966899865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.5e-33 Score=282.67 Aligned_cols=201 Identities=22% Similarity=0.330 Sum_probs=170.0
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------EE
Q ss_conf 848998337972799998732211488518808999588998977899998299658871899929------------39
Q 000671 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1361)
Q Consensus 593 ~~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g------------~i 660 (1361)
++|.++|.+.+|.. ..+|+|+||++++|+.++++||+|||||||+++|.|.++|.+|+|.++| .+
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHE
T ss_conf 97899958999999---999806256884897999999999999999999966988788879998672446839887218
Q ss_pred EEEECCCCC-CCCCHHHHHHCCC---CCCHH----HHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999257768-9888889962399---99989----999999982316888219999974136898877958999999999
Q 000671 661 AYVSQTSWI-QSGSIRDNILYGK---PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1361)
Q Consensus 661 ayv~Q~pwi-~~~TireNIlfg~---~~d~~----~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LAR 732 (1361)
+|+||++.+ .+.|++||+.|.. ..+.+ +.+++++.+.|.+.. .++..+||||||||++|||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI-----------KDRVSTYSKGMVRKLLIAR 146 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG-----------GSBGGGCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------HHHHHHCCHHHHHHHHHHH
T ss_conf 67500154687866778889899861799899999999999867978888-----------5045337998989999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 9804998999828888969999999999999781-599589998267027842-595999939858795186899851
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 733 A~y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~-l~~kT~ilvth~~~~l~~-~d~I~vl~~G~I~~~Gt~~el~~~ 808 (1361)
|+.++|++++||||+++||+...+.+++ .+... -+|+|+|++||+++.+.. ||+|++|++|+|++.|+++|+.++
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~-~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRK-ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 9865999887337988979899999999-9999996599899995989999996999999989999999289999865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5.6e-33 Score=278.11 Aligned_cols=190 Identities=28% Similarity=0.440 Sum_probs=156.1
Q ss_pred CEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEEEECCCCCCC-CCHHHHHHCCC
Q ss_conf 11488518808999588998977899998299658871899929-----------3999925776898-88889962399
Q 000671 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVSQTSWIQS-GSIRDNILYGK 682 (1361)
Q Consensus 615 ~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g-----------~iayv~Q~pwi~~-~TireNIlfg~ 682 (1361)
|++|+++ ++.++++||+|||||||+++|.|.++|++|+|.++| .|+||+|+|-+++ .||+|||.|+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l 95 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGL 95 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTC
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHHHH
T ss_conf 9999749-979999979998099999999739998962899999998869989928522523144352201557666532
Q ss_pred C-CCH----HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 9-998----99999999823168882199999741368988779589999999999804998999828888969999999
Q 000671 683 P-MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757 (1361)
Q Consensus 683 ~-~d~----~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y~~~~i~lLDdp~salD~~~~~~ 757 (1361)
. +++ ++.+++++.+.|.+.. ..+...||||||||++||||+..+|++++||||+|+||+++...
T Consensus 96 ~~~~~~~~~~~v~~~l~~~gl~~~~-----------~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~ 164 (240)
T d2onka1 96 RNVERVERDRRVREMAEKLGIAHLL-----------DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164 (240)
T ss_dssp TTSCHHHHHHHHHHHHHTTTCTTTT-----------TCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHH-----------HCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHH
T ss_conf 3367788999999999863837566-----------57944489999899999877751677067528655588799999
Q ss_pred HHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCC-HHHHHH
Q ss_conf 9999997815-99589998267027842-59599993985879518689985183-389999
Q 000671 758 LFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT-AFEQLV 816 (1361)
Q Consensus 758 i~~~~i~~~l-~~kT~ilvth~~~~l~~-~d~I~vl~~G~I~~~Gt~~el~~~~~-~~~~l~ 816 (1361)
+.+....-.. .+.|+|++||+++.+.. ||+|++|++|++++.|+.+|+.+... ..++++
T Consensus 165 i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl 226 (240)
T d2onka1 165 LMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226 (240)
T ss_dssp HHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHHHHH
T ss_conf 99999999874397699981899999996999999989999999069998329988999985
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=5e-30 Score=254.35 Aligned_cols=195 Identities=24% Similarity=0.391 Sum_probs=162.9
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------EE
Q ss_conf 48998337972799998732211488518808999588998977899998299658871899929-------------39
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1361)
Q Consensus 594 ~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g-------------~i 660 (1361)
.++++|++.+ ..|+++||+|++||.++++||+|||||||+++|.|.. +.+|+|.++| ..
T Consensus 3 il~~~dv~~~-------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCT-------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCC-------CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 9999874157-------1555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEEECCCCC-CCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 999257768-98888899623999--99899999999823168882199999741368988779589999999999804-
Q 000671 661 AYVSQTSWI-QSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN- 736 (1361)
Q Consensus 661 ayv~Q~pwi-~~~TireNIlfg~~--~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y~- 736 (1361)
+|++|+.-. +..++.+|+.++.. ...++.+++++.+.+.+. .+.+..+||||||||++||||+.+
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 24512135774420988764100146689999999986598767-----------6768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCHHH-HHCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf ------99899982888896999999999999978-15995899982670278-42595999939858795186899851
Q 000671 737 ------DADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLA 808 (1361)
Q Consensus 737 ------~~~i~lLDdp~salD~~~~~~i~~~~i~~-~l~~kT~ilvth~~~~l-~~~d~I~vl~~G~I~~~Gt~~el~~~ 808 (1361)
+|++++||||+++||+...+.+. +.+.. ..+++|+|++||+++.+ ..||+|++|++|++++.|+.+|++.+
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~-~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHH-HHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 71338998899971877778989999999-99999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=9e-28 Score=236.21 Aligned_cols=180 Identities=24% Similarity=0.382 Sum_probs=143.4
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC--------EEEEEEC
Q ss_conf 48998337972799998732211488518808999588998977899998299658871899929--------3999925
Q 000671 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1361)
Q Consensus 594 ~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g--------~iayv~Q 665 (1361)
.++++|.+++|+ .++|+|+||++++|+.++++||+|||||||+++|.|.++|.+|+|.++| +++|+||
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~ 77 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 77 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEE
T ss_conf 599998999939----9288420889859989999999997199999999662056778899998962673670899950
Q ss_pred CCCCC-CCCHHHHHH-----CCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 77689-888889962-----399999899999999823168882199999741368988779589999999999804998
Q 000671 666 TSWIQ-SGSIRDNIL-----YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1361)
Q Consensus 666 ~pwi~-~~TireNIl-----fg~~~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y~~~~ 739 (1361)
++.++ +-|++||+. ++.+.++++..+.++...+. | +.++-.+||||||||++||||+.++|+
T Consensus 78 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~-----------~~~~~~~LSgG~~qrv~ia~al~~~~~ 145 (200)
T d1sgwa_ 78 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-D-----------LKKKLGELSQGTIRRVQLASTLLVNAE 145 (200)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-C-----------TTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC-C-----------CCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 1357888289999999997548863799999999874885-6-----------301268689718888999998864998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHCCEEEEEE
Q ss_conf 99982888896999999999999978159-958999826702784259599993
Q 000671 740 IYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLE 792 (1361)
Q Consensus 740 i~lLDdp~salD~~~~~~i~~~~i~~~l~-~kT~ilvth~~~~l~~~d~I~vl~ 792 (1361)
+++||||+++||..+.+.+++....-..+ +.++|..+|+ +..||.+.+|.
T Consensus 146 llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~---l~~~D~~~~l~ 196 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE---LSYCDVNENLH 196 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC---CTTSSEEEEGG
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH---HHHCCHHHHEE
T ss_conf 9998686201699999999999999986799999999162---54416123401
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=7.6e-28 Score=236.78 Aligned_cols=116 Identities=30% Similarity=0.576 Sum_probs=110.5
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCC
Q ss_conf 19999899984899998422512886089699998699985899998882145799967999696389999478851191
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1215 ~Ief~nVs~~Y~~~~~~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
+|+|+||+|+|+++.++||+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.||++++.+++|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHHCCCCCC-CCHHHHHHHHHHCC
Q ss_conf 4347653334540541599999-99999999996276
Q 000671 1295 IIPQEPTLFRGSVRTNLDPLGL-YSDDEIWKVSQLTP 1330 (1361)
Q Consensus 1295 iIpQdp~LF~GTIR~NLdP~~~-~sDeeI~~AL~~~~ 1330 (1361)
+|||||.+|+||||+||..... +++++++++++.++
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~ 117 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 117 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHT
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9824465578400035223575543888999999975
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.95 E-value=1.1e-22 Score=195.09 Aligned_cols=309 Identities=12% Similarity=0.089 Sum_probs=252.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999986022358999999999999999979999998721788--761---489999999999999999999999999
Q 000671 887 KPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK--ITS---GILIGVYAGVSTASAVFVYFRSFFAAH 961 (1361)
Q Consensus 887 ~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~~--~~~---~~~l~iy~~l~~~~~i~~~~~~~~~~~ 961 (1361)
+.+++|+++.++.. .+.+++..+..+.....++.++...+... .+. ..+..++.++.++..++.+++.+....
T Consensus 5 krl~~~~~~~k~~l--~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (319)
T d3b60a2 5 RRLWPTIAPFKAGL--IVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISW 82 (319)
T ss_dssp HHHHHHHGGGHHHH--HHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999--9999999999999999999999999987446877899999999999999764533546654434
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999997639875533358238999983079899834299999999999999999999998869999999
Q 000671 962 LGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVA 1041 (1361)
Q Consensus 962 ~~~~as~~l~~~l~~~ilr~p~sfFd~tp~GrIlnRfs~Di~~iD~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~~~~v~ 1041 (1361)
.+.+...++++++++++++.|++||+++++|++++|+++|++.++..+...+...+...+.+++.++++...+|.+.++.
T Consensus 83 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~ 162 (319)
T d3b60a2 83 VSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIIL 162 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 31000110004777765010111102333221111121212100001111120011233445668888876520021025
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999997899999980604618899999761538888424189999999999988866799999998899
Q 000671 1042 IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWL 1121 (1361)
Q Consensus 1042 i~l~~~~~~i~~~y~~~sr~l~rl~~~~~spi~~~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1121 (1361)
+...+++..+..++.+..++..+......+...+++.|.++|+.+||+|+.|+.+.+++.+..+...+........+.+.
T Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (319)
T d3b60a2 163 VVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSIS 242 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 66899999988766668778789887644567788777624872353111010245666665313567788888777740
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999999999987-6520588547779999999999999999999999999998866999999944499999
Q 000671 1122 ILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEP 1197 (1361)
Q Consensus 1122 ~~rl~~i~~~~~~~~~l~-~~~~~~g~is~g~~gl~l~ya~~l~~~l~~lv~~~~~le~~~~sveRI~ey~~~~~E~ 1197 (1361)
.....++..+....+... +..+..|.+++|.+..++.|...+..|+..+...+.+++++.+|.||+.|++|.|+|+
T Consensus 243 ~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E~ 319 (319)
T d3b60a2 243 DPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK 319 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 64010000002379999999999809978999999999999999999999999999999999999999996699899
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.95 E-value=1e-27 Score=235.76 Aligned_cols=120 Identities=29% Similarity=0.507 Sum_probs=112.6
Q ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 97541999989998489999842251288608969999869998589999888214579996799969638999947885
Q 000671 1211 PFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290 (1361)
Q Consensus 1211 p~~G~Ief~nVs~~Y~~~~~~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR 1290 (1361)
..+|.|+|+||+|+|+++.++||+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+++|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred HCCCEECCCCCCCCCCHHHHCCC-CCCCCHHHHHHHHHHCC
Q ss_conf 11914347653334540541599-99999999999996276
Q 000671 1291 VKLSIIPQEPTLFRGSVRTNLDP-LGLYSDDEIWKVSQLTP 1330 (1361)
Q Consensus 1291 ~~isiIpQdp~LF~GTIR~NLdP-~~~~sDeeI~~AL~~~~ 1330 (1361)
+++++|||+|.+|+||||+||.. ....+|+++++|++.++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~ 132 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMAN 132 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTT
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=4.5e-26 Score=222.49 Aligned_cols=134 Identities=28% Similarity=0.455 Sum_probs=117.5
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH
Q ss_conf 75419999899984899998422512886089699998699985899998882145799967999696389999478851
Q 000671 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291 (1361)
Q Consensus 1212 ~~G~Ief~nVs~~Y~~~~~~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~ 1291 (1361)
..|+|+|+||+|+|++...++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|+++++.+++|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CCCEECCCCCCCCCCHHHHCC--CCCCCCHHHHHHHHHHCC---------CCCCCCCCCCCCCCH
Q ss_conf 191434765333454054159--999999999999996276---------878987444567702
Q 000671 1292 KLSIIPQEPTLFRGSVRTNLD--PLGLYSDDEIWKVSQLTP---------NSRNSRIDIDFPTFN 1345 (1361)
Q Consensus 1292 ~isiIpQdp~LF~GTIR~NLd--P~~~~sDeeI~~AL~~~~---------~~~~~~~~~~~~~~~ 1345 (1361)
++++|||||.+|++|+++|+. +...++++++++|++.++ ++.++.++.+-..+|
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LS 154 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 154 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.93 E-value=4.3e-26 Score=222.64 Aligned_cols=115 Identities=28% Similarity=0.570 Sum_probs=107.2
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCE
Q ss_conf 99998999848999984225128860896999986999858999988821457999679996963899994788511914
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 Ief~nVs~~Y~~~~~~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
||++||+|+|+++ ++||+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|+++++.+++|+++++
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 7999889987999-841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCC
Q ss_conf 3476533345405415999--99999999999962768
Q 000671 1296 IPQEPTLFRGSVRTNLDPL--GLYSDDEIWKVSQLTPN 1331 (1361)
Q Consensus 1296 IpQdp~LF~GTIR~NLdP~--~~~sDeeI~~AL~~~~~ 1331 (1361)
|||||.+|+||||+|+... ...+++++|++++.++.
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~ 118 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFA 118 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTC
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 75665457853454301244555423567789999975
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.93 E-value=1.7e-22 Score=193.73 Aligned_cols=309 Identities=15% Similarity=0.161 Sum_probs=243.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCH---HHH-----HHHHHHHHHHHHHHHH
Q ss_conf 89999999860223589999999999999999799999987217----88761---489-----9999999999999999
Q 000671 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI----PKITS---GIL-----IGVYAGVSTASAVFVY 953 (1361)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~----~~~~~---~~~-----l~iy~~l~~~~~i~~~ 953 (1361)
.+.+++|+++.++... ..+++.++..+.....++.++..++. ..... ... ...+.++.+...++.+
T Consensus 2 lKrl~~~~k~~k~~~~--~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIF--ATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEF 79 (323)
T ss_dssp HHHHHHHHGGGHHHHH--HHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999--99999999999999999999999999862677421556899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999976398755333582389999830798998342999999999999999999999988
Q 000671 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFV 1033 (1361)
Q Consensus 954 ~~~~~~~~~~~~as~~l~~~l~~~ilr~p~sfFd~tp~GrIlnRfs~Di~~iD~~l~~~l~~~~~~~~~~i~~i~v~~~~ 1033 (1361)
.+.+.....+.+...++++++++++++.|++|||+.++|++++|+++|++.++..+...+...+...+.+++.+++++..
T Consensus 80 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 80 IRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999998556778888766540233210001222110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69999999999999999999999978999999806046188999997615388884241899999999999888667999
Q 000671 1034 TWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFH 1113 (1361)
Q Consensus 1034 ~~~~~~v~i~l~~~~~~i~~~y~~~sr~l~rl~~~~~spi~~~~~Etl~Gl~tIRAf~~e~~f~~~~~~~~d~~~~~~~~ 1113 (1361)
+|.+.++.++..+++..+..++.+..++..+......+...+++.|+++|.++||+|+.|+.+.+++.+..+...+....
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998899999999999999999987-65205885477799999999999999999999999999988669999999444
Q 000671 1114 TNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH 1192 (1361)
Q Consensus 1114 ~~~~~~wl~~rl~~i~~~~~~~~~l~-~~~~~~g~is~g~~gl~l~ya~~l~~~l~~lv~~~~~le~~~~sveRI~ey~~ 1192 (1361)
......+......++..+........ +..+.+|.+++|.+..++++...+..|+..+.+.+.+++++.+|.||+.|++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCCC
Q ss_conf 9999
Q 000671 1193 IPPE 1196 (1361)
Q Consensus 1193 ~~~E 1196 (1361)
.|+|
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
T ss_conf 9998
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=7.9e-26 Score=220.56 Aligned_cols=120 Identities=28% Similarity=0.453 Sum_probs=108.3
Q ss_pred CCCCCEEEEEEEEEEECCC-CCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH
Q ss_conf 9975419999899984899-998422512886089699998699985899998882145799967999696389999478
Q 000671 1210 WPFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD 1288 (1361)
Q Consensus 1210 wp~~G~Ief~nVs~~Y~~~-~~~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~ 1288 (1361)
++.+|.|+|+||+|+|+.. ..++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|+|||.||++++.++
T Consensus 6 ~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp SCCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHH
T ss_pred CCCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHH
T ss_conf 66533699999899889999997674438998499899999999984999999986143787689988998531101378
Q ss_pred HHHCCCEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHC
Q ss_conf 85119143476533345405415999--999999999999627
Q 000671 1289 LRVKLSIIPQEPTLFRGSVRTNLDPL--GLYSDDEIWKVSQLT 1329 (1361)
Q Consensus 1289 LR~~isiIpQdp~LF~GTIR~NLdP~--~~~sDeeI~~AL~~~ 1329 (1361)
+|+++++|||+|.+|++|||+|+... ...++++++++.+.+
T Consensus 86 ~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~ 128 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKS 128 (251)
T ss_dssp HHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 8877654045650027634655454210130278899999999
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.91 E-value=1.8e-18 Score=161.36 Aligned_cols=306 Identities=11% Similarity=0.037 Sum_probs=227.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99996687999999999999999999999999998413897234789999999999999999999999999999999999
Q 000671 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1361)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~rir 350 (1361)
..+.|++.++...++.++..++....|++++.+++..-.+. +...-+.+++.+++..++..++.....+...+.+.++.
T Consensus 10 ~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (319)
T d3b60a2 10 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT-DRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVV 88 (319)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST-THHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999999999999999999874468-77899999999999999764533546654434310001
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998549945678899789999999689999408879-88999999999999999999997899999999999
Q 000671 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1361)
Q Consensus 351 ~~l~~~Iy~K~L~ls~~~~~~~s~G~ivNlms~D~~ri~~~~~~-~~~~w~~plqi~ial~~L~~~lG~~~l~gl~v~~i 429 (1361)
..+...+|+|.++.+....++.++|++++.++.|++.+.+.... ........+.++.+++.++..-...++..++.+.+
T Consensus 89 ~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~ 168 (319)
T d3b60a2 89 MTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPI 168 (319)
T ss_dssp HHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 10004777765010111102333221111121212100001111120011233445668888876520021025668999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998999999999999999999999999999994299999824499999999999999999999999999999999989
Q 000671 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM 509 (1361)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~EiL~~Ik~IK~~awE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~ 509 (1361)
...+.....++..+.+++..+..++..+.++|.++|++++|.+++|+.+.++.++..++..+...+.....+........
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (319)
T d3b60a2 169 VSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 248 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99988766668778789887644567788777624872353111010245666665313567788888777740640100
Q ss_pred HHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999-9999999857987788899999999999899999999999999999999999999843567
Q 000671 510 SPTIISS-VIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE 577 (1361)
Q Consensus 510 ~p~lv~~-~~f~~~~l~~~~~Lt~~~vFt~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e 577 (1361)
...+... +.+.+..+...+.+|++..++.+.+...+..|+..++..++.+.++.+|.+|+.++|+.|+
T Consensus 249 ~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 249 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 000023799999999998099789999999999999999999999999999999999999999966998
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.89 E-value=1.2e-18 Score=162.60 Aligned_cols=306 Identities=15% Similarity=0.139 Sum_probs=223.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCH---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99996687999999999999999999999999998413897-234---78--9999999999999999999999999999
Q 000671 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGE-ENL---QE--GLSIVGCLIITKVVESFTQRHCFFGSRR 344 (1361)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~-~~~---~~--g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 344 (1361)
..+.|++.++...++.++..++....|++++.+++....+. ... .. .+.++.++++..++..++.....+...+
T Consensus 8 ~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (323)
T d2hyda2 8 FVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQW 87 (323)
T ss_dssp HHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999986267742155689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999854994567889978999999968999940887-988999999999999999999997899999
Q 000671 345 SGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPG 423 (1361)
Q Consensus 345 ~g~rir~~l~~~Iy~K~L~ls~~~~~~~s~G~ivNlms~D~~ri~~~~~-~~~~~w~~plqi~ial~~L~~~lG~~~l~g 423 (1361)
.+.+++..+...+|+|.++++....++.++|+++|.++.|++.+.+... .+...+...+.++++++.++..-...++..
T Consensus 88 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~ 167 (323)
T d2hyda2 88 TSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAA 167 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99855677888876654023321000122211000111133210011134542011146653346544000014688899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998999999999999999999999999999994299999824499999999999999999999999999999
Q 000671 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG 503 (1361)
Q Consensus 424 l~v~~i~~~l~~~~~~~~~~~q~~~m~~~D~R~~~~~EiL~~Ik~IK~~awE~~f~~~i~~~R~~El~~l~~~~~~~~~~ 503 (1361)
++++.+...+...+.++..+.+++..+..++..+.+.|.++|+++||.+++|+.+.++..+..++..+...+........
T Consensus 168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 247 (323)
T d2hyda2 168 LFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYS 247 (323)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf 99887777777641233320267789899999978788755970234676411100233022311110156776520000
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99998999999999-99999985798778889999999999989999999999999999999999999984356
Q 000671 504 TVIYWMSPTIISSV-IFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH 576 (1361)
Q Consensus 504 ~~~~~~~p~lv~~~-~f~~~~l~~~~~Lt~~~vFt~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~ 576 (1361)
.........+...+ .+.+..++.++.++++.+++.+.++..+..|+..++..+..+.++.+|.+||.++|++|
T Consensus 248 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e 321 (323)
T d2hyda2 248 FAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 11111012055899999999999849988999999999999999999999999999999999999999997799
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.78 E-value=6.1e-19 Score=165.12 Aligned_cols=110 Identities=22% Similarity=0.424 Sum_probs=98.6
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCE
Q ss_conf 99998999848999984225128860896999986999858999988821457999679996963899994788511914
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 Ief~nVs~~Y~~~~~~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
|+++|++.+|.. .+|+||||+|++||.+||+|++|||||||+++|.++.+|++|+|++||.||++++.. |+++++
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred ECCCCCCCCC-CHHHHCC----CCCCCCHHHHHHHHHHCC
Q ss_conf 3476533345-4054159----999999999999996276
Q 000671 1296 IPQEPTLFRG-SVRTNLD----PLGLYSDDEIWKVSQLTP 1330 (1361)
Q Consensus 1296 IpQdp~LF~G-TIR~NLd----P~~~~sDeeI~~AL~~~~ 1330 (1361)
|||+|.||.. |+++|+. ..+.-.++++.++++..+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~ 116 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTT
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 5121111746657788888776405538999999999825
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.1e-18 Score=162.88 Aligned_cols=116 Identities=24% Similarity=0.403 Sum_probs=99.2
Q ss_pred EEEEEEEEEECCCCC--CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 999989998489999--8422512886089699998699985899998882145799967999696389999478---85
Q 000671 1216 IELRQLKIRYRPNAP--LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LR 1290 (1361)
Q Consensus 1216 Ief~nVs~~Y~~~~~--~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~---LR 1290 (1361)
|+++|++.+|..+.. .||+||||+|++||.+||+|+||||||||++++.++.+|++|+|.+||.||...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred HCCCEECCCCCCCCC-CHHHHCC-C---CCC---CCHHHHHHHHHHCCC
Q ss_conf 119143476533345-4054159-9---999---999999999962768
Q 000671 1291 VKLSIIPQEPTLFRG-SVRTNLD-P---LGL---YSDDEIWKVSQLTPN 1331 (1361)
Q Consensus 1291 ~~isiIpQdp~LF~G-TIR~NLd-P---~~~---~sDeeI~~AL~~~~~ 1331 (1361)
+++++|||||-||.. |+++|+. | .+. ..++.+.++|+..+-
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL 130 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL 130 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHST
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf 1664302252227996499999999998499989999999999997699
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.77 E-value=9.3e-19 Score=163.64 Aligned_cols=115 Identities=23% Similarity=0.401 Sum_probs=96.5
Q ss_pred EEEEEEEEEECCCCC--CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 999989998489999--84225128860896999986999858999988821457999679996963899994788----
Q 000671 1216 IELRQLKIRYRPNAP--LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL---- 1289 (1361)
Q Consensus 1216 Ief~nVs~~Y~~~~~--~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~L---- 1289 (1361)
|+++||+++|+.+.. .+|+|+||+|++||.+||+|+||||||||++++.++..|++|+|.+||.||.+++.+.+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HHCCCEECCCCCCCCC-CHHHHCC----C--CCCCCHH----HHHHHHHHCC
Q ss_conf 5119143476533345-4054159----9--9999999----9999996276
Q 000671 1290 RVKLSIIPQEPTLFRG-SVRTNLD----P--LGLYSDD----EIWKVSQLTP 1330 (1361)
Q Consensus 1290 R~~isiIpQdp~LF~G-TIR~NLd----P--~~~~sDe----eI~~AL~~~~ 1330 (1361)
|++|++|||+|.||+. |+++|+. + .+..+.+ ++.+.|+..+
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 133 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE 133 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 5557788041241768668887757888722478999999999999887624
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.76 E-value=2.9e-19 Score=167.65 Aligned_cols=116 Identities=22% Similarity=0.409 Sum_probs=99.7
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHH
Q ss_conf 19999899984899998422512886089699998699985899998882145799967999696389999---478851
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDLRV 1291 (1361)
Q Consensus 1215 ~Ief~nVs~~Y~~~~~~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~---l~~LR~ 1291 (1361)
.|+++||+.+|+.+...+|+||||+|++||.+||+|+||||||||+++|.++..|++|+|.+||.|++..+ +...|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CCCEECCCCCCCCC-CHHHHCC-CCC--CCCH----HHHHHHHHHCC
Q ss_conf 19143476533345-4054159-999--9999----99999996276
Q 000671 1292 KLSIIPQEPTLFRG-SVRTNLD-PLG--LYSD----DEIWKVSQLTP 1330 (1361)
Q Consensus 1292 ~isiIpQdp~LF~G-TIR~NLd-P~~--~~sD----eeI~~AL~~~~ 1330 (1361)
++++|||+|.||+. |+++|+. |.. ..+. +.+.++|+..+
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~g 129 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILD 129 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 51477304334666657777665567613799999999999986659
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.8e-18 Score=161.39 Aligned_cols=111 Identities=21% Similarity=0.270 Sum_probs=95.6
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCE
Q ss_conf 99998999848999984225128860896999986999858999988821457999679996963899994788511914
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 Ief~nVs~~Y~~~~~~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
|+++||+++|.+ ..+|+|+||+|++||.+||+|++|||||||++++.++..|++|+|.+||.||++.+.. |++|++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEEE
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEEE
T ss_conf 999999999899--9998111778869989999989998299999999658788888899999977888644--432223
Q ss_pred ECCCCCCCCC-CHHHHCCCCCC---CC----HHHHHHHHHHCC
Q ss_conf 3476533345-40541599999---99----999999996276
Q 000671 1296 IPQEPTLFRG-SVRTNLDPLGL---YS----DDEIWKVSQLTP 1330 (1361)
Q Consensus 1296 IpQdp~LF~G-TIR~NLdP~~~---~s----DeeI~~AL~~~~ 1330 (1361)
|||+|.||.. |+++|+..... .+ ++.+.++|+..+
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~ 119 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 119 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC-
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 4334202643337889789998759988999999999997578
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.76 E-value=2.4e-18 Score=160.27 Aligned_cols=112 Identities=22% Similarity=0.334 Sum_probs=96.3
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCC
Q ss_conf 19999899984899998422512886089699998699985899998882145799967999696389999478851191
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1215 ~Ief~nVs~~Y~~~~~~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
.|+++|++.+|.. ..+|+||||+|++||.+||+|++|||||||++++.|++.|++|+|.+||.|+++++.+ |++++
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf 4999879999999--9998130678879989999999998299999999758999878799916413547700--01589
Q ss_pred EECCCCCCCCC-CHHHHCCCCC---CCCHHH----HHHHHHHCC
Q ss_conf 43476533345-4054159999---999999----999996276
Q 000671 1295 IIPQEPTLFRG-SVRTNLDPLG---LYSDDE----IWKVSQLTP 1330 (1361)
Q Consensus 1295 iIpQdp~LF~G-TIR~NLdP~~---~~sDee----I~~AL~~~~ 1330 (1361)
+|||+|-||.. |+++|+.... ..+.++ +.++|+..+
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ 125 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTT
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 98003353422209999999998739999999999999998759
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.75 E-value=3.9e-19 Score=166.61 Aligned_cols=101 Identities=24% Similarity=0.332 Sum_probs=90.4
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC
Q ss_conf 54199998999848999984225128860896999986999858999988821457999679996963899994788511
Q 000671 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292 (1361)
Q Consensus 1213 ~G~Ief~nVs~~Y~~~~~~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~~ 1292 (1361)
.+.|+|+|+++.+ .|||+|+||+|++||++||||++|||||||+++|.|+++|++|+|.+|| +
T Consensus 36 ~~~i~~~~~~~~g----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 36 ENNVSFSHLCLVG----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ----CHHHHHHTT----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCCEEEEECCCCC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 8967999769899----7677375999859999999989998299999999579747882899999-------------9
Q ss_pred CCEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCC
Q ss_conf 91434765333454054159999999999999996276
Q 000671 1293 LSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKVSQLTP 1330 (1361)
Q Consensus 1293 isiIpQdp~LF~GTIR~NLdP~~~~sDeeI~~AL~~~~ 1330 (1361)
++++||+|.+|+||||+|+.....+++.+++++++.+.
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~ 136 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQ 136 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99981643026760321420333456057999999977
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=4.5e-18 Score=158.07 Aligned_cols=113 Identities=26% Similarity=0.432 Sum_probs=97.4
Q ss_pred CEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCC
Q ss_conf 41999989998489999842251288608969999869998589999888214579996799969638999947885119
Q 000671 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1361)
Q Consensus 1214 G~Ief~nVs~~Y~~~~~~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1361)
|.|+++|++.+|.. ..||+|+||+|++||.+||+|++|||||||+++|.+++.|++|+|.++|.|+.+. .+++|+++
T Consensus 1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred CCEEEEEEEEEECC--EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHHE
T ss_conf 97899958999999--9998062568848979999999999999999999669887888799986724468-39887218
Q ss_pred CEECCCCCCCCC-CHHHHCCCC---CCCCHHHHHHHHHHC
Q ss_conf 143476533345-405415999---999999999999627
Q 000671 1294 SIIPQEPTLFRG-SVRTNLDPL---GLYSDDEIWKVSQLT 1329 (1361)
Q Consensus 1294 siIpQdp~LF~G-TIR~NLdP~---~~~sDeeI~~AL~~~ 1329 (1361)
+++||++.+|.. |+++|+..+ ...+++++++..+..
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~ 117 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA 117 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 6750015468786677888989986179989999999999
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.72 E-value=3.5e-18 Score=158.96 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=96.6
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 19999899984899998422512886089699998699985899998882145799967999696389999478----85
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD----LR 1290 (1361)
Q Consensus 1215 ~Ief~nVs~~Y~~~~~~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~----LR 1290 (1361)
.|+++||+.+|.. ..+|+|+||+|++||.+||+|++|||||||++++.+++.|++|+|.+||.|+.+.+-+. .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred HCCCEECCCCCCCCC-CHHHHCCCC---CCCCHH----HHHHHHHHCC
Q ss_conf 119143476533345-405415999---999999----9999996276
Q 000671 1291 VKLSIIPQEPTLFRG-SVRTNLDPL---GLYSDD----EIWKVSQLTP 1330 (1361)
Q Consensus 1291 ~~isiIpQdp~LF~G-TIR~NLdP~---~~~sDe----eI~~AL~~~~ 1330 (1361)
+++++|||+|.||+. |+++|+... ...+.+ .+.++|+..+
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~ 128 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG 128 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 551200221222310116676330687729998999999999998759
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.72 E-value=1.1e-17 Score=154.97 Aligned_cols=96 Identities=21% Similarity=0.326 Sum_probs=89.5
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC-C
Q ss_conf 199998999848999984225128860896999986999858999988821457999679996963899994788511-9
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK-L 1293 (1361)
Q Consensus 1215 ~Ief~nVs~~Y~~~~~~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~~-i 1293 (1361)
-++++|++.+|.. . .||+||||+|++||.+||+|++|||||||+++|.+++.|++|+|.+||.|+...+.++++++ |
T Consensus 4 iL~v~nlsk~yg~-~-~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE-F-KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT-E-EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECC-E-EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 6999778999799-6-8871217998899799999999984999999997797688737999999664056999998338
Q ss_pred CEECCCCCCCCC-CHHHHCC
Q ss_conf 143476533345-4054159
Q 000671 1294 SIIPQEPTLFRG-SVRTNLD 1312 (1361)
Q Consensus 1294 siIpQdp~LF~G-TIR~NLd 1312 (1361)
+++||+|.+|.+ |+++|+-
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~ 101 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLL 101 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEE
T ss_conf 72577642478874232143
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.72 E-value=6.7e-18 Score=156.71 Aligned_cols=114 Identities=26% Similarity=0.420 Sum_probs=96.2
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--------
Q ss_conf 199998999848999984225128860896999986999858999988821457999679996963899994--------
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL-------- 1286 (1361)
Q Consensus 1215 ~Ief~nVs~~Y~~~~~~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l-------- 1286 (1361)
.|+++|++.+|.. ..||+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.||...+.
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899--99881506688699799999899982999999997476678997799999933677520000235
Q ss_pred -----HHHHHCCCEECCCCCCCCC-CHHHHCC--C--CCCCCH----HHHHHHHHHCC
Q ss_conf -----7885119143476533345-4054159--9--999999----99999996276
Q 000671 1287 -----KDLRVKLSIIPQEPTLFRG-SVRTNLD--P--LGLYSD----DEIWKVSQLTP 1330 (1361)
Q Consensus 1287 -----~~LR~~isiIpQdp~LF~G-TIR~NLd--P--~~~~sD----eeI~~AL~~~~ 1330 (1361)
...|+++++|||+|-+|.. |+++|+. | ....+. +.+.++|+..+
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVG 137 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 1767999745448998332314110102136565787629998999999999999829
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.71 E-value=2.8e-17 Score=151.76 Aligned_cols=97 Identities=29% Similarity=0.477 Sum_probs=88.8
Q ss_pred CEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH-C
Q ss_conf 419999899984899998422512886089699998699985899998882145799967999696389999478851-1
Q 000671 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV-K 1292 (1361)
Q Consensus 1214 G~Ief~nVs~~Y~~~~~~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~-~ 1292 (1361)
--++++|++.+|.. ..||+||||+|++||.+||+|++|||||||+++|.+++.|++|+|.+||.|+...+.+..++ .
T Consensus 5 ~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 07999618999899--8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred CCEECCCCCCCCC-CHHHHCC
Q ss_conf 9143476533345-4054159
Q 000671 1293 LSIIPQEPTLFRG-SVRTNLD 1312 (1361)
Q Consensus 1293 isiIpQdp~LF~G-TIR~NLd 1312 (1361)
++++||++.+|+. |+++|+.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~ 103 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLM 103 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHH
T ss_conf 355676554577636999999
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.68 E-value=1.2e-16 Score=146.53 Aligned_cols=109 Identities=30% Similarity=0.463 Sum_probs=97.0
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCC
Q ss_conf 19999899984899998422512886089699998699985899998882145799967999696389999478851191
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1215 ~Ief~nVs~~Y~~~~~~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
.||++|++++|+ . +||+|+||+|++||.+||+|++|||||||++++.+++.|.+|+|.+||.|+.+ +|.+++
T Consensus 2 ~lev~~ls~~y~--~-~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS--S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEE
T ss_pred EEEEEEEEEEEC--C-EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCEE
T ss_conf 599998999939--9-28842088985998999999999719999999966205677889999896267-----367089
Q ss_pred EECCCCCCCCC-CHHHHCCC----C-CCCCHHHHHHHHHHCCC
Q ss_conf 43476533345-40541599----9-99999999999962768
Q 000671 1295 IIPQEPTLFRG-SVRTNLDP----L-GLYSDDEIWKVSQLTPN 1331 (1361)
Q Consensus 1295 iIpQdp~LF~G-TIR~NLdP----~-~~~sDeeI~~AL~~~~~ 1331 (1361)
++||++.++.. |+++|+.. + ...++++++++++..+.
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 116 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV 116 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 9950135788828999999999754886379999999987488
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.56 E-value=9.6e-15 Score=131.30 Aligned_cols=107 Identities=21% Similarity=0.387 Sum_probs=85.6
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCE
Q ss_conf 99998999848999984225128860896999986999858999988821457999679996963899994788511914
Q 000671 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1361)
Q Consensus 1216 Ief~nVs~~Y~~~~~~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1361)
++. ++.-+|.. ..+ |+||+++ +|.+||+|++|||||||+++|.|+.+|++|+|.+||.|+.+++.+ |++|++
T Consensus 3 l~v-~~~k~~g~---~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGN---FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETT---EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECC---EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-99999899---999-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred ECCCCCCCCC-CHHHHCC-CCCCCCH----HHHHHHHHHCC
Q ss_conf 3476533345-4054159-9999999----99999996276
Q 000671 1296 IPQEPTLFRG-SVRTNLD-PLGLYSD----DEIWKVSQLTP 1330 (1361)
Q Consensus 1296 IpQdp~LF~G-TIR~NLd-P~~~~sD----eeI~~AL~~~~ 1330 (1361)
|||+|.||+. |+++|+. |....+. +.+.++++..+
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~g 115 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLG 115 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTT
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 52314435220155766653233677889999999998638
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=2.3e-13 Score=120.13 Aligned_cols=109 Identities=19% Similarity=0.257 Sum_probs=92.3
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCC
Q ss_conf 19999899984899998422512886089699998699985899998882145799967999696389999478851191
Q 000671 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1361)
Q Consensus 1215 ~Ief~nVs~~Y~~~~~~VLk~isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1361)
-++++||+.+| +|++|||+|++||.+||+|++|||||||+++|.++. |.+|+|.++|.|+...+.+.++.+.+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EECCCCC-CCCCCHHHHCCC--CCCCCHHHHHHHHHHCC
Q ss_conf 4347653-334540541599--99999999999996276
Q 000671 1295 IIPQEPT-LFRGSVRTNLDP--LGLYSDDEIWKVSQLTP 1330 (1361)
Q Consensus 1295 iIpQdp~-LF~GTIR~NLdP--~~~~sDeeI~~AL~~~~ 1330 (1361)
+++|+.. .|..++.+|+.. ......+.+.++++..+
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA 114 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTT
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 451213577442098876410014668999999998659
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.09 E-value=3.9e-12 Score=110.28 Aligned_cols=146 Identities=14% Similarity=0.070 Sum_probs=98.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--EEEEEC-----------CCCCCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf 89995889989778999982996588718999293--999925-----------77689888889962399999899999
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQ-----------TSWIQSGSIRDNILYGKPMDKARYDK 691 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~--iayv~Q-----------~pwi~~~TireNIlfg~~~d~~~y~~ 691 (1361)
.++|+||+|||||||++.++|++++..|.+...+. ..+..| .+.....+...+..+++
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS--------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT---------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302---------
Q ss_pred HHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CC
Q ss_conf 9998231688821999997413689887795899999999998049989998288889699999999999997815--99
Q 000671 692 AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EK 769 (1361)
Q Consensus 692 vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l--~~ 769 (1361)
..+......+++|+++|.+++++..++++++++|||....+. .+... ..+...+ .+
T Consensus 73 -------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~-~~l~~~l~~~~ 130 (178)
T d1ye8a1 73 -------------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFR-DLVRQIMHDPN 130 (178)
T ss_dssp -------------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHH-HHHHHHHTCTT
T ss_pred -------------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHH-HHHHHHHCCCC
T ss_conf -------------------303762566532013789999997409974230277731004--57999-99998750579
Q ss_pred CEEEEECCCCHHHHHCCEEEEEECCEEEEECC
Q ss_conf 58999826702784259599993985879518
Q 000671 770 KTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1361)
Q Consensus 770 kT~ilvth~~~~l~~~d~I~vl~~G~I~~~Gt 801 (1361)
+|+|+++|+....+.+|++..+++|++.+.+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.56 E-value=3.9e-06 Score=62.00 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHHC----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEE--EE
Q ss_conf 77958999999999980----4998999828888969999999999999781599589998267027842595999--93
Q 000671 719 NLSGGQKQRIQLARAVY----NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILV--LE 792 (1361)
Q Consensus 719 ~LSGGQkqRi~LARA~y----~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l~~~d~I~v--l~ 792 (1361)
.+|+|||+...++.... ..+.++++|||=++||+...+.+.+ .+....++.-+|++||++.++..+|+++. ++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~-~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEE
T ss_conf 0257776677777665565422674455432033579789999999-999855488799998988999732428999996
Q ss_pred CC
Q ss_conf 98
Q 000671 793 GG 794 (1361)
Q Consensus 793 ~G 794 (1361)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
T ss_conf 99
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.19 E-value=1.1e-05 Score=58.22 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHCCEEEEE
Q ss_conf 7795899999999998----049989998288889699999999999997815-995899982670278425959999
Q 000671 719 NLSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVL 791 (1361)
Q Consensus 719 ~LSGGQkqRi~LARA~----y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l-~~kT~ilvth~~~~l~~~d~I~vl 791 (1361)
.+|||||.+++||-.+ +.++++++||||.++||+.....+.+.+ .... .+.-+|++||+++.+..||+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l-~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYI-RRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHH-HHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 322304799999999999547999779996887778999999999999-99728998899995878999736617999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.69 E-value=2.5e-06 Score=63.48 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=54.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCEECCCCCCCCCCHHHHC
Q ss_conf 9999869998589999888214579996799969638999947885119143476533345405415
Q 000671 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NL 1311 (1361)
||+|+|++|||||||++.+.+.+.+..|.+.++|.+....+.+.........++.+.++..+...+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKK 68 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSS
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999989993899999999814888864699877132888876531123366777887541134554
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.05 E-value=0.00013 Score=49.69 Aligned_cols=38 Identities=29% Similarity=0.621 Sum_probs=29.8
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 85188089995889989778999982996588718999
Q 000671 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL 656 (1361)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~ 656 (1361)
-+..|.-+.|+|++||||||+++++++++++..=-+.+
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 99837888999403566257899986530145623311
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.023 Score=31.58 Aligned_cols=126 Identities=26% Similarity=0.297 Sum_probs=66.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHH
Q ss_conf 80899958899897789999829965887189992939999257768988888996239999989999999982316888
Q 000671 623 AQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDI 702 (1361)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~~~d~~~y~~vi~~c~L~~dl 702 (1361)
|=.++++|++|+|||||++++.|.-... ++..| ++.++.+....... +
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~------------~~~~~----~~~~~~~~~~~~~~---------------~- 48 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAI------------VTDIA----GTTRDVLREHIHID---------------G- 48 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSST----TCCCSCEEEEEEET---------------T-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEE------------EECCC----CCCCCEEEEEEECC---------------C-
T ss_conf 9899998999998999999996888667------------51246----64220476532026---------------8-
Q ss_pred HCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCH
Q ss_conf 219999974136898--877958999999999980499899982888896999999999999978159958999826702
Q 000671 703 NNFDHGDLTEIGQRG--LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE 780 (1361)
Q Consensus 703 ~~lp~GD~T~IGe~G--~~LSGGQkqRi~LARA~y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~ 780 (1361)
.....+...| ..-...++..+..+...|.++|+++++-..+.-+.....+.+...+.....++.+|+|-+..+
T Consensus 49 -----~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~D 123 (161)
T d2gj8a1 49 -----MPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 123 (161)
T ss_dssp -----EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred -----CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHH
T ss_conf -----235413653212246520247899999998741332011025654203455544455542014101020465444
Q ss_pred HHHHC
Q ss_conf 78425
Q 000671 781 FLSEV 785 (1361)
Q Consensus 781 ~l~~~ 785 (1361)
..+..
T Consensus 124 l~~~~ 128 (161)
T d2gj8a1 124 ITGET 128 (161)
T ss_dssp HHCCC
T ss_pred HHHHH
T ss_conf 33558
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.32 E-value=0.03 Score=30.66 Aligned_cols=126 Identities=15% Similarity=0.187 Sum_probs=70.1
Q ss_pred CCCCEEEEECCCEEEEEECCCCCCHHHHHHHHH--------CCCCCC-CCEEEECCEEEEEECCCCCCCCCHHHHHHCCC
Q ss_conf 322114885188089995889989778999982--------996588-71899929399992577689888889962399
Q 000671 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL--------GEIPKI-SGTVNLYGSIAYVSQTSWIQSGSIRDNILYGK 682 (1361)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~il--------ge~~~~-~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~ 682 (1361)
+=.|+.+ . ++...|+||+.|||||+|+++. |-.-|- +.++..-..|- -.....|++.-|.
T Consensus 27 VpNdi~~--~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d~I~--------~~~~~~d~~~~~~ 95 (224)
T d1ewqa2 27 VPNDLEM--A-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIY--------TRIGASDDLAGGK 95 (224)
T ss_dssp CCEEEEE--S-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEE--------EECCC------CC
T ss_pred ECCEEEE--C-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCCEEEEECCEEE--------EEECCCCCCCCCC
T ss_conf 4555884--7-867999788734532345565899999852504613751994011699--------9987776023783
Q ss_pred CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 99989999999982316888219999974136898877958999999999980499899982888896999999999999
Q 000671 683 PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762 (1361)
Q Consensus 683 ~~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y~~~~i~lLDdp~salD~~~~~~i~~~~ 762 (1361)
. .-..+-+|++-.---..+..++|+||..++-|+.-+.-+....
T Consensus 96 S------------------------------------tF~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~ai 139 (224)
T d1ewqa2 96 S------------------------------------TFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAV 139 (224)
T ss_dssp S------------------------------------HHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHH
T ss_pred C------------------------------------HHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHH
T ss_conf 0------------------------------------7898678898775028977278554545686233200258888
Q ss_pred HHHHC-CCCEEEEECCCCHHHHH
Q ss_conf 97815-99589998267027842
Q 000671 763 VMAAL-EKKTVILVTHQVEFLSE 784 (1361)
Q Consensus 763 i~~~l-~~kT~ilvth~~~~l~~ 784 (1361)
+..+. .+.+.+++||..+....
T Consensus 140 le~L~~~~~~~i~tTH~~eL~~l 162 (224)
T d1ewqa2 140 AEALHERRAYTLFATHYFELTAL 162 (224)
T ss_dssp HHHHHHHTCEEEEECCCHHHHTC
T ss_pred HHHHHHCCCCEEEEEECHHHHHH
T ss_conf 88886237613786520233322
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.08 E-value=0.0093 Score=34.79 Aligned_cols=113 Identities=24% Similarity=0.279 Sum_probs=71.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 1880899958899897789999829965887189-992939999257768988888996239999989999999982316
Q 000671 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV-NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALD 699 (1361)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v-~~~g~iayv~Q~pwi~~~TireNIlfg~~~d~~~y~~vi~~c~L~ 699 (1361)
.++.++.++||+||||||.+.+++.+++.....| .+...+-|
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~------------------------------------- 198 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEF------------------------------------- 198 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCS-------------------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC-------------------------------------
T ss_conf 4105489876787774477999866625787469996267434-------------------------------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 88821999997413689887795899999999998049989998288889699999999999997815995899982670
Q 000671 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1361)
Q Consensus 700 ~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~ 779 (1361)
.+|+--++++.++ .|+.---+|..++=++||+++..|.- |..+++..++ ....|+.|+-.-|--
T Consensus 199 ----~~~~~~q~~v~~~-----~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~----aa~tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 199 ----DIDGIGQTQVNPR-----VDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQ----ASLTGHLVMSTLHTN 262 (401)
T ss_dssp ----CCSSSEEEECBGG-----GTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHH----HHHTTCEEEEEECCS
T ss_pred ----CCCCCCEEEECCC-----CCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHH----HHHCCCEEEEEECCC
T ss_conf ----5678870265587-----67799999999984138889845768---7599999999----972498589983367
Q ss_pred HHHHHCC
Q ss_conf 2784259
Q 000671 780 EFLSEVD 786 (1361)
Q Consensus 780 ~~l~~~d 786 (1361)
+-....+
T Consensus 263 ~a~~~~~ 269 (401)
T d1p9ra_ 263 TAVGAVT 269 (401)
T ss_dssp SSHHHHH
T ss_pred CHHHHHH
T ss_conf 6676654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.045 Score=29.26 Aligned_cols=144 Identities=15% Similarity=0.122 Sum_probs=73.6
Q ss_pred CCEEEEEEEEEE-C-CCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHH--------CCCCC-CCCEEEECCEEE
Q ss_conf 848998337972-7-999987322114885188089995889989778999982--------99658-871899929399
Q 000671 593 RSVKIQEGNFSW-D-PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL--------GEIPK-ISGTVNLYGSIA 661 (1361)
Q Consensus 593 ~~I~~~~~~f~w-~-~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~il--------ge~~~-~~G~v~~~g~ia 661 (1361)
..+.++++.--- + ...+.++=.|++++ +.+....|+||+.|||||+|+++. |-.-| .+.++....+|-
T Consensus 10 ~~l~i~~~rHPlle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d~I~ 88 (234)
T d1wb9a2 10 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIF 88 (234)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEE
T ss_pred CCEEEEEEECCEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEECCCCHHHE
T ss_conf 96899973787797446998264057988-99539999546731368999987999999872976741766613442023
Q ss_pred EEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 99257768988888996239999989999999982316888219999974136898877958999999999980499899
Q 000671 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1361)
Q Consensus 662 yv~Q~pwi~~~TireNIlfg~~~d~~~y~~vi~~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y~~~~i~ 741 (1361)
......|++.-|.. -=..+-+|++-.----.+..++
T Consensus 89 --------~~~~~~d~~~~~~S------------------------------------~F~~E~~~~~~il~~~~~~sLv 124 (234)
T d1wb9a2 89 --------TRVGAADDLASGRS------------------------------------TFMVEMTETANILHNATEYSLV 124 (234)
T ss_dssp --------EEEC-----------------------------------------------CHHHHHHHHHHHHHCCTTEEE
T ss_pred --------EEECCCCCCCCCHH------------------------------------HHHHHHHHHHHHHHHCCCCCEE
T ss_conf --------48746753436531------------------------------------8999999999999745466088
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHC-C-CCEEEEECCCCHH
Q ss_conf 98288889699999999999997815-9-9589998267027
Q 000671 742 LFDDPFSAVDAHTAATLFNECVMAAL-E-KKTVILVTHQVEF 781 (1361)
Q Consensus 742 lLDdp~salD~~~~~~i~~~~i~~~l-~-~kT~ilvth~~~~ 781 (1361)
|+||+.++-++.-+..+....+..+. + +..++++||..+.
T Consensus 125 liDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 125 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp EEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 532223587745666789876454320454428985246877
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.70 E-value=0.0054 Score=36.71 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089995889989778999982996
Q 000671 624 QKIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
=.++++|.+|+|||||+++++|.-
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 889999999999999999997787
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.43 E-value=0.0075 Score=35.56 Aligned_cols=34 Identities=32% Similarity=0.302 Sum_probs=29.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8808999588998977899998299658871899
Q 000671 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1361)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~ 655 (1361)
+|+.++++|++|.|||||+++|+|+.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.33 E-value=0.0057 Score=36.50 Aligned_cols=28 Identities=36% Similarity=0.552 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 8999588998977899998299658871
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIPKISG 652 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~~~~G 652 (1361)
.++|+|++|+|||||+++|+|.-....|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7999899999789999999588867775
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.23 E-value=0.0096 Score=34.67 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=27.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8969999869998589999888214579996799
Q 000671 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275 (1361)
Q Consensus 1242 ~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~ 1275 (1361)
+|++..++|.||.|||||+++|..=.+...|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.10 E-value=0.021 Score=31.94 Aligned_cols=45 Identities=16% Similarity=0.332 Sum_probs=31.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCC
Q ss_conf 8999588998977899998299658871899929399992577689888
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGS 673 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~pwi~~~T 673 (1361)
+++|.|++||||||+.+.|-..+....+ .-++..++++.+.....
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~----~~~v~~Is~D~F~~~~~ 126 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE----HRRVELITTDGFLHPNQ 126 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT----CCCEEEEEGGGGBCCHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEEEEEEECCCH
T ss_conf 9999689999876899999999730468----99659995215689845
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.02 E-value=0.0075 Score=35.55 Aligned_cols=24 Identities=46% Similarity=0.594 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899958899897789999829965
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
.++++|++|+|||||+++|+|+-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899989999869999999858984
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.01 E-value=0.0069 Score=35.84 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++|+|++|+|||||+++|.|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.99 E-value=0.07 Score=27.73 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=34.8
Q ss_pred CCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECC
Q ss_conf 73221148851880899958899897789999829965887189992939999257
Q 000671 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT 666 (1361)
Q Consensus 611 ~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~ 666 (1361)
+.|.+..--+.+|+++.|.|++|+|||+++.-+.-.+....| .++.|++-+
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g-----~~v~~~s~E 73 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-----KKVGLAMLE 73 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC-----CCEEEEESS
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-----CCEEEEEEC
T ss_conf 668887469789808999947999799999999972655336-----634576401
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.1 Score=26.47 Aligned_cols=144 Identities=12% Similarity=0.055 Sum_probs=64.2
Q ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCC----CCCCCEEEECCEEEEEECCCCCCCCCHHHHHH-CCCCCCHHHHHHHHH
Q ss_conf 5188089995889989778999982996----58871899929399992577689888889962-399999899999999
Q 000671 620 IKWAQKIAVCGSVGAGKSSLLYAILGEI----PKISGTVNLYGSIAYVSQTSWIQSGSIRDNIL-YGKPMDKARYDKAIK 694 (1361)
Q Consensus 620 i~~G~~~~ivG~~GsGKStLl~~ilge~----~~~~G~v~~~g~iayv~Q~pwi~~~TireNIl-fg~~~d~~~y~~vi~ 694 (1361)
+.+|+++.|+|+.|+|||+|+..+.--+ +...+...-.+++.|+.-+.- ...+++.+. .+..++...+.....
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~--~~~~~~Rl~~~~~~~~~~~~~~~~~ 103 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP--PTAIHHRLHALGAHLSAEERQAVAD 103 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC--HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCH--HHHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 55895899992899989999999999997699721112357873689851234--9999999999862368666531233
Q ss_pred HHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----CHHHHHHHHHHHHHH-HCC
Q ss_conf 82316888219999974136898877958999999999980499899982888896-----999999999999978-159
Q 000671 695 ACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV-----DAHTAATLFNECVMA-ALE 768 (1361)
Q Consensus 695 ~c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y~~~~i~lLDdp~sal-----D~~~~~~i~~~~i~~-~l~ 768 (1361)
.+...+.-+ ...... -....-.+. ....+++++++|-..... |....+.+++.+-.- ...
T Consensus 104 ------~~~~~~~~~-----~~~~~~--~~~~~~~~~-~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~ 169 (274)
T d1nlfa_ 104 ------GLLIQPLIG-----SLPNIM--APEWFDGLK-RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 169 (274)
T ss_dssp ------HEEECCCTT-----SCCCTT--SHHHHHHHH-HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ------CCEECCCCC-----CCCHHH--HHHHHHHHH-HHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf ------323214567-----420357--899999988-752676589628135422665232256899998877776447
Q ss_pred CCEEEEECCCC
Q ss_conf 95899982670
Q 000671 769 KKTVILVTHQV 779 (1361)
Q Consensus 769 ~kT~ilvth~~ 779 (1361)
+.|++++.|.-
T Consensus 170 ~~~vi~v~H~~ 180 (274)
T d1nlfa_ 170 GCSIVFLHHAS 180 (274)
T ss_dssp CCEEEEEEEC-
T ss_pred CCCEEHHHHCC
T ss_conf 97540131005
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.70 E-value=0.011 Score=34.32 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88089995889989778999982996
Q 000671 622 WAQKIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.|+++++.|++||||||+.+++..++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.61 E-value=0.11 Score=26.23 Aligned_cols=147 Identities=12% Similarity=0.071 Sum_probs=71.2
Q ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 51880899958899897789999829965887189992939999257768988888996239999989999999982316
Q 000671 620 IKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALD 699 (1361)
Q Consensus 620 i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~~~d~~~y~~vi~~c~L~ 699 (1361)
+++|+++.|.|++|||||+|..-++-......+ .+.|++-+ .+ .+.+.+-.+....
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~------~~~~is~e-----~~------------~~~~~~~~~~~~~- 78 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACANKE------RAILFAYE-----ES------------RAQLLRNAYSWGM- 78 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC------CEEEEESS-----SC------------HHHHHHHHHTTSC-
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC------CCCEEECC-----CC------------HHHHHHHHHHCCC-
T ss_conf 869849999918999999999999999987232------44112126-----79------------9999999998299-
Q ss_pred HHHHC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCEEEEECCCCC---CCHHHHHHHHHHHHHH-HCCCCEEE
Q ss_conf 88821-99999741368988779589999999999804-9989998288889---6999999999999978-15995899
Q 000671 700 KDINN-FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN-DADIYLFDDPFSA---VDAHTAATLFNECVMA-ALEKKTVI 773 (1361)
Q Consensus 700 ~dl~~-lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y~-~~~i~lLDdp~sa---lD~~~~~~i~~~~i~~-~l~~kT~i 773 (1361)
|... ...|....+......... +...-.+.+++.+ ++++++.|..... .+.............. ...+.|++
T Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 156 (242)
T d1tf7a2 79 -DFEEMERQNLLKIVCAYPESAGL-EDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGL 156 (242)
T ss_dssp -CHHHHHHTTSEEECCCCGGGSCH-HHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred -CHHHHHHCCCEEEEEEECCHHHH-HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf -86998545861799730001017-9999999999984088533220431430489999999999999999998698399
Q ss_pred EECCCCH-----------HHHHCCEEEEEE
Q ss_conf 9826702-----------784259599993
Q 000671 774 LVTHQVE-----------FLSEVDRILVLE 792 (1361)
Q Consensus 774 lvth~~~-----------~l~~~d~I~vl~ 792 (1361)
++.|... .-..+|-|+.++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 157 FTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp EEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred EEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 998567512554457764046421699999
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.24 E-value=0.012 Score=34.01 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=27.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 8999588998977899998299658871899929399992577
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS 667 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~p 667 (1361)
.++|+|+.|||||||+..|+.++....- ++++...++
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~------~v~v~~~d~ 40 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGI------RPGLIKHTH 40 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC------CEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC------EEEEECCCC
T ss_conf 8999918999899999999999997797------687741466
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.16 E-value=0.025 Score=31.40 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.5
Q ss_pred EEEECCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 488518808999588998977899998
Q 000671 617 NLDIKWAQKIAVCGSVGAGKSSLLYAI 643 (1361)
Q Consensus 617 ~l~i~~G~~~~ivG~~GsGKStLl~~i 643 (1361)
++++..+.+++|+|++|||||+++.||
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi 45 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAI 45 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHH
T ss_pred EEECCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 975899998999999999889999999
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.14 E-value=0.015 Score=33.20 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++++|++|+|||||+++|.|+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.98 E-value=0.013 Score=33.53 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
-++++|++++|||||++++.|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=93.97 E-value=0.017 Score=32.69 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=61.5
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCEECCCCC----CCCCCHHHHCC
Q ss_conf 28860896999986999858999988821457999679996963899994788511914347653----33454054159
Q 000671 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT----LFRGSVRTNLD 1312 (1361)
Q Consensus 1237 sl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~----LF~GTIR~NLd 1312 (1361)
..-++.|..+-|+|+|||||||++++|++.+++..=-|+| .|..++.+..-++.+..-.+..+ ++...+|.|-|
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti--Ed~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd 237 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI--EDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPD 237 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE--ESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCS
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC--CCHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 9999837888999403566257899986530145623311--32265511112454100146542499999997434998
Q ss_pred --CCCCCCHHHHHHHHHHCCCCC
Q ss_conf --999999999999996276878
Q 000671 1313 --PLGLYSDDEIWKVSQLTPNSR 1333 (1361)
Q Consensus 1313 --P~~~~sDeeI~~AL~~~~~~~ 1333 (1361)
-.++.-+.|.+++++.+.-+-
T Consensus 238 ~iivgEiR~~ea~~~l~a~~tGh 260 (323)
T d1g6oa_ 238 RIILGELRSSEAYDFYNVLCSGH 260 (323)
T ss_dssp EEEESCCCSTHHHHHHHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 54578667465999999998169
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.92 E-value=0.0096 Score=34.70 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=24.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 808999588998977899998299658
Q 000671 623 AQKIAVCGSVGAGKSSLLYAILGEIPK 649 (1361)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~ilge~~~ 649 (1361)
|++++++||+||||||+.+.+..+++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.88 E-value=0.045 Score=29.26 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=25.6
Q ss_pred EEECCCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8851880899958899897789999829965
Q 000671 618 LDIKWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 618 l~i~~G~~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
+.-++|..+-++|.+||||||+.+.+.-.+.
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~ 49 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 49 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8589986999989999998999999998877
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.88 E-value=0.047 Score=29.16 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=11.3
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 999804998999828888969999999
Q 000671 731 ARAVYNDADIYLFDDPFSAVDAHTAAT 757 (1361)
Q Consensus 731 ARA~y~~~~i~lLDdp~salD~~~~~~ 757 (1361)
-+++....-++|+=-|+.+=-..+-..
T Consensus 151 ~~l~~~~~GliLvtGpTGSGKSTTl~~ 177 (401)
T d1p9ra_ 151 RRLIKRPHGIILVTGPTGSGKSTTLYA 177 (401)
T ss_dssp HHHHTSSSEEEEEECSTTSCHHHHHHH
T ss_pred HHHHHHHHCEEEEECCCCCCCCHHHHH
T ss_conf 999864105489876787774477999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=93.88 E-value=0.029 Score=30.78 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 808999588998977899998299
Q 000671 623 AQKIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~ilge 646 (1361)
.+++.++|++||||||+.+.|..+
T Consensus 2 kklIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 2 KKIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 879999899999999999999995
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.79 E-value=0.0063 Score=36.16 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=29.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8808999588998977899998299658871899
Q 000671 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1361)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~ 655 (1361)
+|+.++++|++|.|||||+++|+|+.....|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.76 E-value=0.021 Score=31.92 Aligned_cols=24 Identities=38% Similarity=0.643 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 969999869998589999888214
Q 000671 1243 GTRVGVVGRTGSGKTTLISALFRL 1266 (1361)
Q Consensus 1243 GekVgIVGrTGSGKSTL~~~L~Rl 1266 (1361)
|=||++||++|+|||||++.|.+-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.75 E-value=0.013 Score=33.53 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80899958899897789999829965
Q 000671 623 AQKIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
.-.++++|++++|||||+++|.|.-.
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 97899988999989999999858985
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.68 E-value=0.017 Score=32.61 Aligned_cols=40 Identities=28% Similarity=0.327 Sum_probs=28.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 8808999588998977899998299658871899929399992577
Q 000671 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS 667 (1361)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~p 667 (1361)
+.-.++|+|+.|+|||||+..+...+... | .++|.+.=+|
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~-g-----~~vavlavDp 92 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIRE-G-----LKVAVIAVDP 92 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHT-T-----CCEEEEEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC-C-----CCEEEECCCC
T ss_conf 83289743899998999999999999756-9-----8332203777
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.56 E-value=0.026 Score=31.16 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++++|.+|+|||||++++.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.56 E-value=0.014 Score=33.39 Aligned_cols=50 Identities=24% Similarity=0.296 Sum_probs=32.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE----------EECCEECCCCCHHHHHHC
Q ss_conf 96999986999858999988821457999679----------996963899994788511
Q 000671 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSI----------LIDGVDICSMGLKDLRVK 1292 (1361)
Q Consensus 1243 GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I----------~IDGvDI~~i~l~~LR~~ 1292 (1361)
|.-|.|+||+|||||||...|..-++.-...+ ..||+|-.-++.+.....
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~ 61 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQL 61 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEECCCHHHHHH
T ss_conf 749999899999999999999845899717988604677744468851330122024554
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.52 E-value=0.026 Score=31.15 Aligned_cols=22 Identities=45% Similarity=0.699 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|.+|+|||||++++.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.49 E-value=0.016 Score=32.81 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9995889989778999982996
Q 000671 626 IAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 626 ~~ivG~~GsGKStLl~~ilge~ 647 (1361)
++++|++|+|||||++++.|+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.45 E-value=0.023 Score=31.69 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899958899897789999829965
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
+++|.|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.43 E-value=0.029 Score=30.78 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899958899897789999829965
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
.++++|+.|+|||||++++.|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.34 E-value=0.036 Score=30.02 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=23.9
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 851880899958899897789999829
Q 000671 619 DIKWAQKIAVCGSVGAGKSSLLYAILG 645 (1361)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~ilg 645 (1361)
=+++|+++.|.|++|||||+|..-++-
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 955887999985898988999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.31 E-value=0.004 Score=37.76 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=26.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 08999588998977899998299658871899
Q 000671 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~ 655 (1361)
+.+.|+||.|+|||||++.+..++....+.+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~ 33 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 69999889997199999999999997799799
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.20 E-value=0.027 Score=31.06 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=24.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 089995889989778999982996588718
Q 000671 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilge~~~~~G~ 653 (1361)
+.++|+|..|||||||+..++.++.....+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~ 31 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWR 31 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 099998099998999999999999867983
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.15 E-value=0.027 Score=31.11 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=29.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCC
Q ss_conf 89995889989778999982996588718999293999925776898
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS 671 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~pwi~~ 671 (1361)
+++|.|++||||||+.+.|.-.+....... ..-.+..++++-|...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~~-~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDY-RQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCG-GGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCCC-CCCCEEEEECCCCCCC
T ss_conf 999989997879999999999964101345-7884399934653224
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.09 E-value=0.012 Score=33.86 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=32.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC
Q ss_conf 896999986999858999988821457999679996963899994788511
Q 000671 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292 (1361)
Q Consensus 1242 ~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~~ 1292 (1361)
.|.+..++|.||.|||||+++|..=.....|.|.-. ..-|.|.-|.+
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~----~~rGrHTTt~~ 142 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEH----LGRGKHTTRHV 142 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------------------CCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCC----CCCCCEEEEEE
T ss_conf 356499987787348789875151767640355533----58971244347
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=0.014 Score=33.44 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=40.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCEECCCCCCC
Q ss_conf 699998699985899998882145799967999696389999478851191434765333
Q 000671 1244 TRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303 (1361)
Q Consensus 1244 ekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF 1303 (1361)
..|.|+|+.|+|||||+..+.+.+...++.+.+.+.+........+.....-+.|+...+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 699998899971999999999999977997999984550122211465412343302466
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.04 E-value=0.025 Score=31.36 Aligned_cols=66 Identities=26% Similarity=0.348 Sum_probs=40.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCC---CHHHHHHHHHHHCC
Q ss_conf 880899958899897789999829965887189992939999257768988888996239999---98999999998231
Q 000671 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPM---DKARYDKAIKACAL 698 (1361)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~~~---d~~~y~~vi~~c~L 698 (1361)
+|.+++|+||+|+||+||.+.++-..+...-.. .+.|..-.| |++=.-|..| +++.+++-+++-.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~----~is~TTR~~-------R~~E~~G~dY~Fvs~~~F~~~i~~g~f 69 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQV----SVSHTTRQP-------RPGEVHGEHYFFVNHDEFKEMISRDAF 69 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEE----CCCEECSCC-------CTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEE----EEEEECCCC-------CCCCCCCCCCEEECHHHHHHHHHHHHH
T ss_conf 980999999999999999999986398668427----888763678-------865543212334328999987542111
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.91 E-value=0.043 Score=29.48 Aligned_cols=62 Identities=24% Similarity=0.341 Sum_probs=35.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC--------------CCCEEEECCEECCCCCHHHHHHCCCEECCCCCCCCCCH
Q ss_conf 8969999869998589999888214579--------------99679996963899994788511914347653334540
Q 000671 1242 EGTRVGVVGRTGSGKTTLISALFRLVEP--------------AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSV 1307 (1361)
Q Consensus 1242 ~GekVgIVGrTGSGKSTL~~~L~Rl~e~--------------~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTI 1307 (1361)
.|.-+-|+||||+||+||.+.|..-++. ..|. +||+|---++.+...+.+. +.-++..+++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E--~~G~dY~Fvs~~~F~~~i~---~g~flE~~~~ 75 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE--VHGEHYFFVNHDEFKEMIS---RDAFLEHAEV 75 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHH---TTCEEEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC--CCCCCCEEECHHHHHHHHH---HHHHEEEEEE
T ss_conf 9809999999999999999999863986684278887636788655--4321233432899998754---2111269998
Q ss_pred H
Q ss_conf 5
Q 000671 1308 R 1308 (1361)
Q Consensus 1308 R 1308 (1361)
.
T Consensus 76 ~ 76 (205)
T d1s96a_ 76 F 76 (205)
T ss_dssp T
T ss_pred C
T ss_conf 7
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.63 E-value=0.052 Score=28.80 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=27.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8969999869998589999888214579996799969
Q 000671 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1361)
Q Consensus 1242 ~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDG 1278 (1361)
.|+-|.|+|++||||||+...|.+-... --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.59 E-value=0.038 Score=29.87 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089995889989778999982996
Q 000671 624 QKIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
+.++|+|+.|||||||.++|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.52 E-value=0.043 Score=29.46 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=55.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHCC
Q ss_conf 99958899897789999829965887189992939999257768988888996239999989999999982316888219
Q 000671 626 IAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNF 705 (1361)
Q Consensus 626 ~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~~~d~~~y~~vi~~c~L~~dl~~l 705 (1361)
++|+|++++|||||+++|.|.-. .. .. ++. ..++.+.. ..+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~~----~~-~~------------------~~~------~~~~~~g~------~~~~--- 49 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIAS----TS-AH------------------DKL------PESQKRGI------TIDI--- 49 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC----------------------------------------------------------
T ss_pred EEEEECCCCCHHHHHHHHHHHCC----CE-EC------------------CCC------CCEEEEEE------ECCC---
T ss_conf 99990778709999999997439----56-20------------------223------30012133------0222---
Q ss_pred CCCCCCCCCCCCCC--CCHHHHHHHHHHHHHCCCCCEEE-EECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf 99997413689887--79589999999999804998999-828888969999999999999781599589998267027
Q 000671 706 DHGDLTEIGQRGLN--LSGGQKQRIQLARAVYNDADIYL-FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781 (1361)
Q Consensus 706 p~GD~T~IGe~G~~--LSGGQkqRi~LARA~y~~~~i~l-LDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~ 781 (1361)
..........+.+ -.+|+..-+.-+......+|..+ +-|....+...+..+. ..+. . .++.++++-+..+.
T Consensus 50 -~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~-~~~~--~-~~~p~iiv~NKiD~ 123 (179)
T d1wb1a4 50 -GFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM-LILD--H-FNIPIIVVITKSDN 123 (179)
T ss_dssp -CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH-HHHH--H-TTCCBCEEEECTTS
T ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHH-HHHH--H-CCCCCEECCCCCCC
T ss_conf -3000013785211012532232100012344302432121222221102345445-5555--2-59762011232344
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=92.46 E-value=0.031 Score=30.54 Aligned_cols=22 Identities=27% Similarity=0.637 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998589999888214
Q 000671 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl 1266 (1361)
+|+|||++|+|||||+++|.+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=92.43 E-value=0.026 Score=31.20 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=24.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99998699985899998882145799967999
Q 000671 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~I 1276 (1361)
.++|+|.+|||||||+..|.+-+...+-++-+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v 35 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGL 35 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 89999189998999999999999977976877
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.40 E-value=0.23 Score=23.51 Aligned_cols=48 Identities=29% Similarity=0.556 Sum_probs=34.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECCEECCCCCHHHH
Q ss_conf 89699998699985899998882145------------7999679996963899994788
Q 000671 1242 EGTRVGVVGRTGSGKTTLISALFRLV------------EPAGGSILIDGVDICSMGLKDL 1289 (1361)
Q Consensus 1242 ~GekVgIVGrTGSGKSTL~~~L~Rl~------------e~~~G~I~IDGvDI~~i~l~~L 1289 (1361)
.+=||||+|++|+|||||+++|.+-- .+..|.+.++|.++..++....
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~ 66 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 66 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCCEEEEECCCCC
T ss_conf 888899999999999999999977876224225654333200122049923465236885
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.37 E-value=0.035 Score=30.14 Aligned_cols=28 Identities=29% Similarity=0.300 Sum_probs=23.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1880899958899897789999829965
Q 000671 621 KWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
++.-.++++|+.|+|||||++.+.+...
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7777899999999898999999967887
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.31 E-value=0.049 Score=29.01 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=24.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1880899958899897789999829965
Q 000671 621 KWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
++|..+.++|.+||||||+..+|.-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.05 E-value=0.065 Score=27.99 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=24.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 188089995889989778999982996
Q 000671 621 KWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
|+|-.+++.|++||||||+.+.|.-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.99 E-value=0.055 Score=28.58 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++++|++|+|||||++.+.|+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.96 E-value=0.15 Score=24.98 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|..|+|||||++.+++.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=91.89 E-value=0.076 Score=27.45 Aligned_cols=88 Identities=17% Similarity=0.261 Sum_probs=46.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCEECCCCCCCCCCHHHH--C-CCCC---CCC
Q ss_conf 999986999858999988821457999679996963899994788511914347653334540541--5-9999---999
Q 000671 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTN--L-DPLG---LYS 1318 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~N--L-dP~~---~~s 1318 (1361)
.|||.|++||||||+.+.|.....-..+ ..++.+|++|-+..+...++. + ..+| .+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pes~D 144 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLKERGLMKKKGFPESYD 144 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHHHHHCCCCCCCCHHHHH
T ss_conf 9999689999876899999999730468-----------------99659995215689845888836876688167631
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 9999999962768789874445677022444101
Q 000671 1319 DDEIWKVSQLTPNSRNSRIDIDFPTFNKFCCRII 1352 (1361)
Q Consensus 1319 DeeI~~AL~~~~~~~~~~~~~~~~~~~~~~~~~~ 1352 (1361)
-+.+.+.|...-.+.. +...|.++|.--..+
T Consensus 145 ~~~L~~~L~~lk~g~~---~v~~P~yd~~~~d~~ 175 (308)
T d1sq5a_ 145 MHRLVKFVSDLKSGVP---NVTAPVYSHLIYDVI 175 (308)
T ss_dssp HHHHHHHHHHHTTTCS---CEEECCEETTTTEEC
T ss_pred HHHHHHHHHHHHCCCC---CCEEECCCHHHCCCC
T ss_conf 9999999999975998---642105300102557
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=91.84 E-value=0.058 Score=28.37 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++++|..|+|||||++.+.+.-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.73 E-value=0.061 Score=28.19 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=24.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 8089995889989778999982996588718
Q 000671 623 AQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1361)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~ilge~~~~~G~ 653 (1361)
.++++|.|+.||||||+.+.|.-.+......
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9889998999989899999999999876998
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=91.50 E-value=0.091 Score=26.81 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++|+|+.|||||||+..++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.44 E-value=0.039 Score=29.78 Aligned_cols=37 Identities=32% Similarity=0.335 Sum_probs=27.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC---CEEEECCEEC
Q ss_conf 999986999858999988821457999---6799969638
Q 000671 1245 RVGVVGRTGSGKTTLISALFRLVEPAG---GSILIDGVDI 1281 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl~e~~~---G~I~IDGvDI 1281 (1361)
-+||+|++|||||||+..|.+.+...+ |.|.-|+.+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~~ 42 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGG 42 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 9999809999899999999999986798379998316766
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.36 E-value=0.082 Score=27.20 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=21.6
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf 98049989998288889699999999999997815995899982670278
Q 000671 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL 782 (1361)
Q Consensus 733 A~y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l 782 (1361)
-...+.|++++|-. .... +....+.+.+- ..++.+++|-+..+..
T Consensus 131 ~~~~~~d~~l~~~~-~~~~-~~d~~l~~~l~---~~~k~~~~V~nK~D~~ 175 (400)
T d1tq4a_ 131 MKFYEYDFFIIISA-TRFK-KNDIDIAKAIS---MMKKEFYFVRTKVDSD 175 (400)
T ss_dssp TTGGGCSEEEEEES-SCCC-HHHHHHHHHHH---HTTCEEEEEECCHHHH
T ss_pred HHHHCCEEEEEECC-CCCC-HHHHHHHHHHH---HCCCCEEEEEECCCCC
T ss_conf 43322659999658-8887-88999999999---7699879997086321
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.28 E-value=0.016 Score=32.94 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++++|.+|+|||||++++.|+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=91.14 E-value=0.092 Score=26.80 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0896999986999858999988821457
Q 000671 1241 SEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1361)
Q Consensus 1241 ~~GekVgIVGrTGSGKSTL~~~L~Rl~e 1268 (1361)
++|-+|.|.|++||||||+...|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.14 E-value=0.24 Score=23.38 Aligned_cols=100 Identities=29% Similarity=0.354 Sum_probs=55.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHCC
Q ss_conf 99958899897789999829965887189992939999257768988888996239999989999999982316888219
Q 000671 626 IAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNF 705 (1361)
Q Consensus 626 ~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~~~d~~~y~~vi~~c~L~~dl~~l 705 (1361)
+.|.|++|||||-|++|+.-++....- .+.|++-. +. ...+.+.+..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~~~~------~~~~~~~~---------~~--------~~~~~~~~~~---------- 85 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKKRGY------RVIYSSAD---------DF--------AQAMVEHLKK---------- 85 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHTTC------CEEEEEHH---------HH--------HHHHHHHHHH----------
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCC------CEEEECHH---------HH--------HHHHHHHHHC----------
T ss_conf 799888998399999999987446765------04884437---------87--------9999999871----------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHH-CCCCEEEEECCCC
Q ss_conf 99997413689887795899999999998049989998288889-69999999999999781-5995899982670
Q 000671 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA-VDAHTAATLFNECVMAA-LEKKTVILVTHQV 779 (1361)
Q Consensus 706 p~GD~T~IGe~G~~LSGGQkqRi~LARA~y~~~~i~lLDdp~sa-lD~~~~~~i~~~~i~~~-l~~kT~ilvth~~ 779 (1361)
|+.+ -.+.-+..+|++++||.=.- -+...+..+|+ ++... ..++.+|+.+...
T Consensus 86 -----------------~~~~---~~~~~~~~~dll~iDDi~~i~~~~~~~~~lf~-lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 86 -----------------GTIN---EFRNMYKSVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp -----------------TCHH---HHHHHHHTCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESSC
T ss_pred -----------------CCHH---HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH-HHHHHHHCCCEEEEECCCC
T ss_conf -----------------6626---67898762130101126550586577889999-9998763166389954875
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.12 E-value=0.077 Score=27.41 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|+.|+|||||++.+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.12 E-value=0.021 Score=32.01 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=29.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf 0899958899897789999829965887189992939999257768
Q 000671 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI 669 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~pwi 669 (1361)
-+++|+|++||||||+.+++...+... +-+.+.++|+.+-
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~------~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRRE------GVKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH------TCCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC------CCCEEEEECCCCC
T ss_conf 899998999780999999999997156------9976999477787
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.12 E-value=0.31 Score=22.51 Aligned_cols=43 Identities=23% Similarity=0.429 Sum_probs=35.3
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 8518808999588998977899998299658871899929399992577
Q 000671 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS 667 (1361)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~p 667 (1361)
-++.|.++-+.|+.|||||++...+....+...| .++|+.-+.
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~------~v~yiDtE~ 95 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG------TCAFIDAEH 95 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC------CEEEEESSC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC------EEEEEECCC
T ss_conf 8667547898058765227999999999970799------899998876
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.06 E-value=0.1 Score=26.39 Aligned_cols=122 Identities=15% Similarity=0.195 Sum_probs=57.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHH
Q ss_conf 8999588998977899998299658--87189992939999257768988888996239999989999999982316888
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDI 702 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~~--~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~~~d~~~y~~vi~~c~L~~dl 702 (1361)
-++|+|++|+|||||.-+++..... ..|++. +..+. .+++++..++-+.. ..-.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~---------~g~~~------------~D~~~~E~~r~~ti---~~~~ 59 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE---------EGTTT------------TDYTPEAKLHRTTV---RTGV 59 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG---------GTCCS------------SCCSHHHHHTTSCC---SCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH---------HCCCC------------CCCHHHHHHHCCEE---EEEC
T ss_conf 999994889809999999999709755306622---------22113------------56269888738768---7510
Q ss_pred H--CCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 2--199999741368988-7795899999999998049989998288889699999999999997815995899982670
Q 000671 703 N--NFDHGDLTEIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1361)
Q Consensus 703 ~--~lp~GD~T~IGe~G~-~LSGGQkqRi~LARA~y~~~~i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~ 779 (1361)
. .+.+---+.|.-.|. +++|--..=++ ..|.-+++.| +..++-+.+.++ ++.+.. .+..++++-+.+
T Consensus 60 ~~~~~~~~~~n~iDtPGh~dF~~e~~~al~-----~~D~avlvvd-a~~Gv~~~t~~~-~~~~~~---~~~p~~i~iNk~ 129 (267)
T d2dy1a2 60 APLLFRGHRVFLLDAPGYGDFVGEIRGALE-----AADAALVAVS-AEAGVQVGTERA-WTVAER---LGLPRMVVVTKL 129 (267)
T ss_dssp EEEEETTEEEEEEECCCSGGGHHHHHHHHH-----HCSEEEEEEE-TTTCSCHHHHHH-HHHHHH---TTCCEEEEEECG
T ss_pred CCCCCCCCCEEEECCCCHHHHHHHHHHHHC-----CCCCEEEEEE-CCCCCCCHHHHH-HHHHHH---CCCCCCCCCCCC
T ss_conf 222234321068806815543355654312-----4673389842-357742115788-776554---044310133320
Q ss_pred H
Q ss_conf 2
Q 000671 780 E 780 (1361)
Q Consensus 780 ~ 780 (1361)
.
T Consensus 130 D 130 (267)
T d2dy1a2 130 D 130 (267)
T ss_dssp G
T ss_pred C
T ss_conf 2
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.95 E-value=0.082 Score=27.19 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++++|+.|+|||||++.+.+.-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=90.89 E-value=0.1 Score=26.41 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=23.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 880899958899897789999829965
Q 000671 622 WAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
..+++.+.|++||||||+.++|..++.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 985999989999998999999999728
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.77 E-value=0.24 Score=23.48 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899958899897789999829
Q 000671 625 KIAVCGSVGAGKSSLLYAILG 645 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilg 645 (1361)
.++++|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=90.69 E-value=0.11 Score=26.07 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 188089995889989778999982996
Q 000671 621 KWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
..+.++.++|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=90.57 E-value=0.097 Score=26.59 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=7.0
Q ss_pred EEEEECCCCCCCHHHHH
Q ss_conf 99982888896999999
Q 000671 740 IYLFDDPFSAVDAHTAA 756 (1361)
Q Consensus 740 i~lLDdp~salD~~~~~ 756 (1361)
++++.|+....+++...
T Consensus 127 ~v~vvd~~~~~~~~~~~ 143 (244)
T d1yrba1 127 VVYISDPEILKKPNDYC 143 (244)
T ss_dssp EEEEECGGGCCSHHHHH
T ss_pred EEEEECCCCCCCCHHHH
T ss_conf 89996365566750476
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=90.54 E-value=0.21 Score=23.88 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=19.8
Q ss_pred CCCCCEEEEECCCCCCCHHHHH--------HHHHHHHHHH--CCCCEEEEECCCC
Q ss_conf 0499899982888896999999--------9999999781--5995899982670
Q 000671 735 YNDADIYLFDDPFSAVDAHTAA--------TLFNECVMAA--LEKKTVILVTHQV 779 (1361)
Q Consensus 735 y~~~~i~lLDdp~salD~~~~~--------~i~~~~i~~~--l~~kT~ilvth~~ 779 (1361)
..+++++++|-. ..++...+. .+...+ ..+ ..+.++++++|--
T Consensus 145 ~~~~~~vvID~l-~~l~~~~~~~~~~~~~~~~~~~l-~~lA~~~~i~vi~~~q~~ 197 (277)
T d1cr2a_ 145 GLGCDVIILDHI-SIVVSASGESDERKMIDNLMTKL-KGFAKSTGVVLVVICHLK 197 (277)
T ss_dssp TTCCSEEEEEEE-EC----------CHHHHHHHHHH-HHHHHHHCCEEEEEEECC
T ss_pred CCCCCEEEECCC-CCCCCCCCCCCHHHHHHHHHHHH-HHHHHHCCCCCEEECCCC
T ss_conf 367625997054-21203465443067789999999-997650165520310356
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.49 E-value=0.087 Score=26.96 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0899958899897789999829965
Q 000671 624 QKIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
.+++++|.+||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=90.48 E-value=0.084 Score=27.09 Aligned_cols=12 Identities=25% Similarity=0.388 Sum_probs=8.2
Q ss_pred CCCEEEEECCCC
Q ss_conf 995899982670
Q 000671 768 EKKTVILVTHQV 779 (1361)
Q Consensus 768 ~~kT~ilvth~~ 779 (1361)
...++|+.||--
T Consensus 147 ~~~~ivv~t~~D 158 (257)
T d1h65a_ 147 WNKAIVALTHAQ 158 (257)
T ss_dssp GGGEEEEEECCS
T ss_pred HHCEEEEEECCC
T ss_conf 638899998864
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=90.43 E-value=0.1 Score=26.47 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=23.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 69999869998589999888214579996799969
Q 000671 1244 TRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1361)
Q Consensus 1244 ekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDG 1278 (1361)
+-|.|+|.+||||||+++.|.+- ..|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~---~~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH---CCCCEEECH
T ss_conf 79999899999999999999995---799799603
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.38 E-value=0.12 Score=25.84 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0896999986999858999988821457
Q 000671 1241 SEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1361)
Q Consensus 1241 ~~GekVgIVGrTGSGKSTL~~~L~Rl~e 1268 (1361)
+.|..|-++|.+||||||+..+|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=90.34 E-value=0.13 Score=25.67 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 188089995889989778999982996
Q 000671 621 KWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
|+|-.++++||.||||||..+.|.-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.33 E-value=0.08 Score=27.29 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++++|+.||||||+.+.|.-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.20 E-value=0.089 Score=26.89 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869998589999888214579
Q 000671 1245 RVGVVGRTGSGKTTLISALFRLVEP 1269 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl~e~ 1269 (1361)
.|||.|++||||||+++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.09 E-value=0.095 Score=26.66 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89995889989778999982
Q 000671 625 KIAVCGSVGAGKSSLLYAIL 644 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~il 644 (1361)
-++|+|.+|||||||.-+++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.03 E-value=0.13 Score=25.68 Aligned_cols=63 Identities=13% Similarity=0.219 Sum_probs=36.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCC---CHHHHHHHHHHHC
Q ss_conf 80899958899897789999829965887189992939999257768988888996239999---9899999999823
Q 000671 623 AQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPM---DKARYDKAIKACA 697 (1361)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~~~---d~~~y~~vi~~c~ 697 (1361)
.++++++||+|+||+||.+.++.+.+..= .-.+.|-...| |++=.-|.+| +++..++.++.-.
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~-----~~~v~~TTR~~-------R~~E~~G~dY~Fvs~~~F~~~~~~g~ 68 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHPDRF-----AYPIPHTTRPP-------KKDEENGKNYYFVSHDQMMQDISNNE 68 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTE-----ECCCCEECSCC----------CCBTTTBEECCHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCE-----EECCCCCCCCC-------CCCCCCCCCCEEEEHHHHHHHEECCC
T ss_conf 77199999899999999999997097676-----52300166899-------98645576540531465455100682
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=89.91 E-value=0.11 Score=26.06 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=21.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089699998699985899998882145
Q 000671 1241 SEGTRVGVVGRTGSGKTTLISALFRLV 1267 (1361)
Q Consensus 1241 ~~GekVgIVGrTGSGKSTL~~~L~Rl~ 1267 (1361)
+.+.-+.|+|++||||||+...|.+-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=89.87 E-value=0.23 Score=23.55 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=28.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 18808999588998977899998299658871899929399992577
Q 000671 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS 667 (1361)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~p 667 (1361)
+++..++++||+|+||||-+.-|...+.. .| .+++.+.=+.
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~-~g-----~kV~lit~Dt 44 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQN-LG-----KKVMFCAGDT 44 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHT-TT-----CCEEEECCCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CC-----CCEEEEEECC
T ss_conf 99779999899999889999999999997-79-----9079998136
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.84 E-value=0.083 Score=27.15 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999869998589999888214
Q 000671 1244 TRVGVVGRTGSGKTTLISALFRL 1266 (1361)
Q Consensus 1244 ekVgIVGrTGSGKSTL~~~L~Rl 1266 (1361)
.-|-||||||+||+||.+.|.+-
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 71999998999999999999970
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.78 E-value=0.26 Score=23.09 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0899958899897789999829
Q 000671 624 QKIAVCGSVGAGKSSLLYAILG 645 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilg 645 (1361)
-.++++|+.|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899999899298999999971
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=89.73 E-value=0.11 Score=26.19 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0899958899897789999829965
Q 000671 624 QKIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
+++.|+|++||||||+.+.|...+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.73 E-value=0.12 Score=25.96 Aligned_cols=25 Identities=40% Similarity=0.736 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999588998977899998299658
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIPK 649 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~~ 649 (1361)
.++|+||+||||+||.+.++.+.+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.72 E-value=0.076 Score=27.45 Aligned_cols=42 Identities=29% Similarity=0.286 Sum_probs=27.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf 899958899897789999829965887189992939999257768
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI 669 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~pwi 669 (1361)
+++|.|+.|||||||...|.-.+....| ..-.++.++.+-+.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~---~~~~v~~iS~DdfY 70 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYG---GEKSIGYASIDDFY 70 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHG---GGSCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHC---CCCCEEEECCCCCC
T ss_conf 9983799878899999999999998727---78606763567777
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.70 E-value=0.18 Score=24.50 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=33.0
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 8518808999588998977899998299658871899929399992577
Q 000671 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS 667 (1361)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~p 667 (1361)
-+++|+++.|.|+.|||||+|..-++-........-...+.+.|+..+.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~ 78 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 78 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 9869969999838999889999999998631243126896399994023
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=89.61 E-value=0.14 Score=25.38 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998589999888214
Q 000671 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl 1266 (1361)
+|+++|++|+|||||++.|.+-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.54 E-value=0.3 Score=22.65 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899958899897789999829
Q 000671 625 KIAVCGSVGAGKSSLLYAILG 645 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilg 645 (1361)
.++++|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.52 E-value=0.16 Score=24.84 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=26.1
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8518808999588998977899998299658
Q 000671 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPK 649 (1361)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~ilge~~~ 649 (1361)
-+++|+++.|.|++|||||+|..-++.....
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~~~ 49 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQL 49 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9859979999958999999999999999988
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.44 E-value=0.1 Score=26.40 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=9.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999858999988821
Q 000671 1245 RVGVVGRTGSGKTTLISALFR 1265 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~R 1265 (1361)
+|+|.|++|+|||||+.+|..
T Consensus 9 ~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899989999989999999999
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=89.37 E-value=0.15 Score=25.00 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998589999888214
Q 000671 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl 1266 (1361)
+|++||++|+|||||++.|.+-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.32 E-value=0.14 Score=25.30 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699985899998882145
Q 000671 1245 RVGVVGRTGSGKTTLISALFRLV 1267 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl~ 1267 (1361)
.|||.|++||||||+.+.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999787999999999996
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.29 E-value=0.14 Score=25.43 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++|+|.+++|||||+.+|++.-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.24 E-value=0.19 Score=24.21 Aligned_cols=33 Identities=24% Similarity=0.519 Sum_probs=25.5
Q ss_pred CCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3221148851880899958899897789999829
Q 000671 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG 645 (1361)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilg 645 (1361)
.++.--+.+ .|.-+.+.|++|+||||+...++.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=89.13 E-value=0.1 Score=26.42 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999869998589999888214579996799969
Q 000671 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDG 1278 (1361)
-|.|+|++||||||++..|.+-+. +...++|
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 899989999998999999999809---9889830
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=88.98 E-value=0.16 Score=24.92 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899958899897789999829965
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
.++++|+.|+|||||++.+.++..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.98 E-value=0.15 Score=25.15 Aligned_cols=24 Identities=46% Similarity=0.556 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899958899897789999829965
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
.++|+|..+||||||+++|+|+--
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 599981898979999999968997
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=88.97 E-value=0.17 Score=24.68 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999986999858999988821457
Q 000671 1243 GTRVGVVGRTGSGKTTLISALFRLVE 1268 (1361)
Q Consensus 1243 GekVgIVGrTGSGKSTL~~~L~Rl~e 1268 (1361)
..-|.|.|.+||||||++.+|.+...
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.91 E-value=0.22 Score=23.72 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=9.2
Q ss_pred EECCCEEEEECCCCCCHHHHHH
Q ss_conf 6089699998699985899998
Q 000671 1240 FSEGTRVGVVGRTGSGKTTLIS 1261 (1361)
Q Consensus 1240 I~~GekVgIVGrTGSGKSTL~~ 1261 (1361)
+++|+-+-|.|++|+|||++++
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l 41 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICH 41 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHH
T ss_conf 8599799999589999999999
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.88 E-value=0.16 Score=24.90 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 08999588998977899998299
Q 000671 624 QKIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilge 646 (1361)
+-++++|+.|+|||||++.+.+.
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=88.77 E-value=0.46 Score=21.13 Aligned_cols=42 Identities=12% Similarity=0.356 Sum_probs=33.9
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECC
Q ss_conf 851880899958899897789999829965887189992939999257
Q 000671 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT 666 (1361)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~ 666 (1361)
-+++|.++.+.|+.|||||++...+....+...| .+.|+.-+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~------~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------TCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC------CEEEEESS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC------EEEEECCC
T ss_conf 9667358998057774789999999999870898------79998654
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.75 E-value=0.08 Score=27.25 Aligned_cols=27 Identities=22% Similarity=0.275 Sum_probs=23.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 880899958899897789999829965
Q 000671 622 WAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
+|..+.++|++||||||+.+.|.-.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.74 E-value=0.14 Score=25.27 Aligned_cols=24 Identities=46% Similarity=0.540 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899958899897789999829965
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
.++|+|...||||||+++|+|.--
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~~ 51 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 699976898979999999968986
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=88.73 E-value=0.15 Score=25.05 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=22.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 188089995889989778999982996
Q 000671 621 KWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
++.-.++++|..|||||||+..+.+.-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 985799999999989899999996688
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.63 E-value=0.14 Score=25.40 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998589999888214
Q 000671 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl 1266 (1361)
.|+|||++|+|||||+++|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.55 E-value=0.2 Score=24.15 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=22.9
Q ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 518808999588998977899998299
Q 000671 620 IKWAQKIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 620 i~~G~~~~ivG~~GsGKStLl~~ilge 646 (1361)
-++.+++.++|+.||||||+.+.++..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999989999899999899999999976
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.43 E-value=0.1 Score=26.35 Aligned_cols=31 Identities=26% Similarity=0.227 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 6999986999858999988821457999679
Q 000671 1244 TRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274 (1361)
Q Consensus 1244 ekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I 1274 (1361)
..|+|.|..||||||++..|...+.....++
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 8899989999898999999999998769986
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.41 E-value=0.16 Score=24.93 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89995889989778999982
Q 000671 625 KIAVCGSVGAGKSSLLYAIL 644 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~il 644 (1361)
+++|+|..||||||+.+.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.41 E-value=0.16 Score=24.76 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899958899897789999829965
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
.++|+||+||||+||.+.++.+.+
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999999999999999997488
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.36 E-value=0.17 Score=24.61 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=88.36 E-value=0.15 Score=25.17 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.3
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 089995889989778999982
Q 000671 624 QKIAVCGSVGAGKSSLLYAIL 644 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~il 644 (1361)
-+++|+|++||||||+...+-
T Consensus 4 ~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998988778999999999
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=88.32 E-value=0.0091 Score=34.87 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=25.8
Q ss_pred CCCEEEEECCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 22114885188089995889989778999982
Q 000671 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL 644 (1361)
Q Consensus 613 L~~i~l~i~~G~~~~ivG~~GsGKStLl~~il 644 (1361)
.++.++++.+| +++|+|++||||||++.||.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 70279974998-08998899998799999999
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=88.12 E-value=0.18 Score=24.42 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699985899998882145
Q 000671 1245 RVGVVGRTGSGKTTLISALFRLV 1267 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl~ 1267 (1361)
+|||+|++.||||||+++|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.09 E-value=0.3 Score=22.61 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=23.6
Q ss_pred EEEECCCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 48851880899958899897789999829
Q 000671 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILG 645 (1361)
Q Consensus 617 ~l~i~~G~~~~ivG~~GsGKStLl~~ilg 645 (1361)
++-.-.|.-+.++|++|+||||+...+..
T Consensus 8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 8 VLVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999999999980899998999999998
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=88.09 E-value=0.21 Score=23.87 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=17.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089699998699985899998882145
Q 000671 1241 SEGTRVGVVGRTGSGKTTLISALFRLV 1267 (1361)
Q Consensus 1241 ~~GekVgIVGrTGSGKSTL~~~L~Rl~ 1267 (1361)
++|-+|.|+|+.||||||+...|..-+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.09 E-value=0.18 Score=24.50 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 08969999869998589999888214
Q 000671 1241 SEGTRVGVVGRTGSGKTTLISALFRL 1266 (1361)
Q Consensus 1241 ~~GekVgIVGrTGSGKSTL~~~L~Rl 1266 (1361)
+..-||.+||++|+|||||++.|.+=
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 77778999999998989999999678
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.00 E-value=0.19 Score=24.23 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++++|+.|+|||||++.+.+.-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=87.97 E-value=0.52 Score=20.76 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0899958899897789999829965
Q 000671 624 QKIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
.-+.+.||.|||||++.+++..++.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 0799889699988999999862010
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.94 E-value=0.19 Score=24.29 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++++|...+|||||++++-|--
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=87.86 E-value=0.18 Score=24.40 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.+.++|++||||||+.+.|.-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.84 E-value=0.16 Score=24.79 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++|.||.||||||..+.|.-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.83 E-value=0.2 Score=24.01 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=32.5
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 8518808999588998977899998299658871899929399992577
Q 000671 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS 667 (1361)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~p 667 (1361)
-+++|+.+.|.|++|||||++...++.+.............+.|...+.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 81 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHH
T ss_conf 9768979999889988788999999999974443166662488740177
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.79 E-value=0.46 Score=21.15 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|+.|+|||||++.+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.79 E-value=0.2 Score=24.07 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899958899897789999829
Q 000671 625 KIAVCGSVGAGKSSLLYAILG 645 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilg 645 (1361)
.++++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.64 E-value=0.17 Score=24.61 Aligned_cols=68 Identities=18% Similarity=0.163 Sum_probs=30.2
Q ss_pred CCCCCCCCCCCCCCH--H-----HHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 997413689887795--8-----9999999999804998--99982888896999999999999978159958999826
Q 000671 708 GDLTEIGQRGLNLSG--G-----QKQRIQLARAVYNDAD--IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777 (1361)
Q Consensus 708 GD~T~IGe~G~~LSG--G-----QkqRi~LARA~y~~~~--i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth 777 (1361)
.+.+.|.-.|.+-+. + +.+.-.+++...++++ ++...+............+.+.. . ....+|++++|+
T Consensus 131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~-~-~~~~r~i~Vitk 207 (306)
T d1jwyb_ 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-D-PEGKRTIGVITK 207 (306)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-C-SSCSSEEEEEEC
T ss_pred CCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHH-C-CCCCEEEEEEEC
T ss_conf 8806865888644366884035899999999999827775168763256310034999999973-8-678858999820
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.59 E-value=0.54 Score=20.59 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=34.4
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 85188089995889989778999982996588718999293999925776
Q 000671 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668 (1361)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~pw 668 (1361)
-++.|..+.+.|+.|||||++...+....+...| .+.|+.-+-.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~------~~vyIDtE~~ 99 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG------VAAFIDAEHA 99 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTC------EEEEEESSCC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC------EEEEEECCCC
T ss_conf 8666336999648874889999999998754898------8999989766
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.59 E-value=0.54 Score=20.59 Aligned_cols=110 Identities=17% Similarity=0.212 Sum_probs=62.5
Q ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 51880899958899897789999829965887189992939999257768988888996239999989999999982316
Q 000671 620 IKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALD 699 (1361)
Q Consensus 620 i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~~~d~~~y~~vi~~c~L~ 699 (1361)
+++..-+.+.||.|+|||+|.+++.+++... +-++. .
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~---------~~~~~----------------------------------~ 74 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQAN---------FISIK----------------------------------G 74 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTTCE---------EEEEC----------------------------------H
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCCC---------EEEEE----------------------------------H
T ss_conf 9988757887899876304778878771894---------79988----------------------------------7
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH---------HHHHHHHHHHHH---HC
Q ss_conf 888219999974136898877958999999999980499899982888896999---------999999999978---15
Q 000671 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---------TAATLFNECVMA---AL 767 (1361)
Q Consensus 700 ~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y~~~~i~lLDdp~salD~~---------~~~~i~~~~i~~---~l 767 (1361)
.++.. +..| ...++-|-.+.+|--..|-|+++||.=...... ..+.+.+..+.. ..
T Consensus 75 ~~l~~------~~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 142 (265)
T d1r7ra3 75 PELLT------MWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 142 (265)
T ss_dssp HHHHT------SCTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC---
T ss_pred HHHHH------CCCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99525------3165------15899999999998639843568754632455787678873799999999999962867
Q ss_pred --CCCEEEEECCCCHHHHH
Q ss_conf --99589998267027842
Q 000671 768 --EKKTVILVTHQVEFLSE 784 (1361)
Q Consensus 768 --~~kT~ilvth~~~~l~~ 784 (1361)
.+.-+|..||+++.++.
T Consensus 143 ~~~~v~vi~ttn~~~~ld~ 161 (265)
T d1r7ra3 143 TKKNVFIIGATNRPDIIDP 161 (265)
T ss_dssp ---CCEEEECCBSCTTTSC
T ss_pred CCCCEEEEEECCCCHHCCH
T ss_conf 7799899991799222799
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=87.51 E-value=0.19 Score=24.24 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 08999588998977899998299
Q 000671 624 QKIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilge 646 (1361)
-.++++|+.|+|||||++.+.+.
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79999999998999999999648
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=87.48 E-value=0.12 Score=25.77 Aligned_cols=10 Identities=40% Similarity=0.411 Sum_probs=3.9
Q ss_pred ECCCEEEEEE
Q ss_conf 5188089995
Q 000671 620 IKWAQKIAVC 629 (1361)
Q Consensus 620 i~~G~~~~iv 629 (1361)
..+|..++|+
T Consensus 79 ~~~g~~vavl 88 (327)
T d2p67a1 79 IREGLKVAVI 88 (327)
T ss_dssp HHTTCCEEEE
T ss_pred HHCCCCEEEE
T ss_conf 7569833220
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.36 E-value=0.46 Score=21.15 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|..|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.24 E-value=0.22 Score=23.71 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=22.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 188089995889989778999982996
Q 000671 621 KWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.+...++|+||.||||||+.+.|.-.+
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899489998999998899999999997
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.20 E-value=0.19 Score=24.31 Aligned_cols=13 Identities=8% Similarity=0.291 Sum_probs=6.3
Q ss_pred CCCEEEEECCCCH
Q ss_conf 9958999826702
Q 000671 768 EKKTVILVTHQVE 780 (1361)
Q Consensus 768 ~~kT~ilvth~~~ 780 (1361)
++.-++++-|...
T Consensus 110 ~~~piiiv~NK~D 122 (209)
T d1nrjb_ 110 NGIDILIACNKSE 122 (209)
T ss_dssp TCCCEEEEEECTT
T ss_pred CCCCEEEEEEEEC
T ss_conf 3698699998003
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.15 E-value=0.2 Score=24.06 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 880899958899897789999829965
Q 000671 622 WAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
++++++|-|+.||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=87.11 E-value=0.21 Score=23.93 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699998699985899998882145
Q 000671 1244 TRVGVVGRTGSGKTTLISALFRLV 1267 (1361)
Q Consensus 1244 ekVgIVGrTGSGKSTL~~~L~Rl~ 1267 (1361)
-+|.|+|+.||||||+.+.|..-+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.07 E-value=0.24 Score=23.49 Aligned_cols=24 Identities=38% Similarity=0.410 Sum_probs=14.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699998699985899998882145
Q 000671 1244 TRVGVVGRTGSGKTTLISALFRLV 1267 (1361)
Q Consensus 1244 ekVgIVGrTGSGKSTL~~~L~Rl~ 1267 (1361)
..|.|+|+.||||||++..|..-+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489998999998899999999997
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.06 E-value=0.14 Score=25.38 Aligned_cols=45 Identities=27% Similarity=0.569 Sum_probs=28.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC-------------CCCCEEEECCEECCCCCHHHHHHC
Q ss_conf 99986999858999988821457-------------999679996963899994788511
Q 000671 1246 VGVVGRTGSGKTTLISALFRLVE-------------PAGGSILIDGVDICSMGLKDLRVK 1292 (1361)
Q Consensus 1246 VgIVGrTGSGKSTL~~~L~Rl~e-------------~~~G~I~IDGvDI~~i~l~~LR~~ 1292 (1361)
|.|+|+|||||+||...|..-.+ |..|. .||+|-.-++.+.....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~~~ 61 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSM 61 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--CCCCCCEECCHHHHHHH
T ss_conf 99989999998999999997488662477764268999997--57843243248899998
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.01 E-value=0.43 Score=21.38 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++++|..|+|||||+..+++.-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989978999999997197
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.96 E-value=0.23 Score=23.54 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899958899897789999829
Q 000671 625 KIAVCGSVGAGKSSLLYAILG 645 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilg 645 (1361)
.++++|+.|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.76 E-value=0.21 Score=23.94 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 188089995889989778999982996
Q 000671 621 KWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
++-..++|+||.||||||+...|...+
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997289998999999899999999985
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=86.68 E-value=0.15 Score=25.10 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998589999888214
Q 000671 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl 1266 (1361)
.|||||++++|||||+++|.+-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.66 E-value=0.29 Score=22.82 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998589999888214
Q 000671 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl 1266 (1361)
.|+++|++|+|||||+++|.+-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=86.64 E-value=0.17 Score=24.66 Aligned_cols=21 Identities=43% Similarity=0.774 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869998589999888214
Q 000671 1246 VGVVGRTGSGKTTLISALFRL 1266 (1361)
Q Consensus 1246 VgIVGrTGSGKSTL~~~L~Rl 1266 (1361)
|||+|++|+|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=86.63 E-value=0.18 Score=24.37 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 08999588998977899998299658
Q 000671 624 QKIAVCGSVGAGKSSLLYAILGEIPK 649 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilge~~~ 649 (1361)
..+.+.||.||||||+.+++.+++..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.58 E-value=0.21 Score=23.92 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 08999588998977899998299
Q 000671 624 QKIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilge 646 (1361)
-.++|+|-..+|||||++++-+-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=86.49 E-value=0.4 Score=21.63 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999858999988821
Q 000671 1245 RVGVVGRTGSGKTTLISALFR 1265 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~R 1265 (1361)
||.+||+.|+|||||++.|.+
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~ 24 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNG 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHCC
T ss_conf 999999999899999999808
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=86.43 E-value=0.2 Score=24.08 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=23.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1880899958899897789999829965
Q 000671 621 KWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
++.-+++|-|+.||||||+++.|...++
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9861999889999888999999998707
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=86.40 E-value=0.16 Score=24.87 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80899958899897789999829965
Q 000671 623 AQKIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
.-.++|+|+.|+|||||+..+...+.
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 15986117998889999999999876
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=86.40 E-value=0.38 Score=21.80 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=23.4
Q ss_pred EEEECCCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 48851880899958899897789999829
Q 000671 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILG 645 (1361)
Q Consensus 617 ~l~i~~G~~~~ivG~~GsGKStLl~~ilg 645 (1361)
++-...|.-+.++|++|+||||+...++.
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999999999980899999999999998
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=86.35 E-value=0.22 Score=23.73 Aligned_cols=13 Identities=15% Similarity=0.105 Sum_probs=4.5
Q ss_pred CCCCCCHHHHHHH
Q ss_conf 5333582389999
Q 000671 985 FFDSTPVGRILTR 997 (1361)
Q Consensus 985 fFd~tp~GrIlnR 997 (1361)
+|=.+|.-..+.|
T Consensus 140 i~Ld~~~~~~~~R 152 (197)
T d2vp4a1 140 IYLRTSPEVAYER 152 (197)
T ss_dssp EEEECCHHHHHHH
T ss_pred HEEECCHHHHHHH
T ss_conf 2024078999999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.33 E-value=0.23 Score=23.62 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=23.4
Q ss_pred HHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 999999999804998--99982888896999999999999978159958999826
Q 000671 725 KQRIQLARAVYNDAD--IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777 (1361)
Q Consensus 725 kqRi~LARA~y~~~~--i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth 777 (1361)
.+-.++++....+++ +++.++....+.......+.+. + .....++++.+|+
T Consensus 149 ~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~-~-~~~~~r~i~Vltk 201 (299)
T d2akab1 149 FQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKE-V-DPQGQRTIGVITK 201 (299)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHH-H-CTTCSSEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH-H-CCCCCCEEEEEEC
T ss_conf 999999999862756035664034542112599999997-3-8677813667702
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.31 E-value=0.29 Score=22.74 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++++|+.|+|||||++.+.+.-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.23 E-value=0.25 Score=23.28 Aligned_cols=21 Identities=43% Similarity=0.727 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869998589999888214
Q 000671 1246 VGVVGRTGSGKTTLISALFRL 1266 (1361)
Q Consensus 1246 VgIVGrTGSGKSTL~~~L~Rl 1266 (1361)
|.|+|||||||+||...|..-
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.14 E-value=0.29 Score=22.78 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++++|+.|+|||||++.+++.-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999909899999998299
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=86.11 E-value=0.26 Score=23.15 Aligned_cols=20 Identities=35% Similarity=0.624 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89995889989778999982
Q 000671 625 KIAVCGSVGAGKSSLLYAIL 644 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~il 644 (1361)
+++|+|..||||||..+.+-
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.98 E-value=0.28 Score=22.90 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=24.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 18808999588998977899998299658
Q 000671 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPK 649 (1361)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilge~~~ 649 (1361)
++|.+++|.|+-||||||+.+.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=85.61 E-value=0.3 Score=22.69 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=24.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8808999588998977899998299658
Q 000671 622 WAQKIAVCGSVGAGKSSLLYAILGEIPK 649 (1361)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilge~~~ 649 (1361)
+|++++|-|+-||||||+...|...+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=85.58 E-value=0.32 Score=22.44 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=53.6
Q ss_pred EEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 14885188089995889989778999982996588718999293999925776898888899623999998999999998
Q 000671 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKA 695 (1361)
Q Consensus 616 i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~~~d~~~y~~vi~~ 695 (1361)
+|+.-++...++++||+|+||||-+.-|.-.+. ..| .+++.+.=+.+ ...-.+
T Consensus 4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~-----~kV~lit~Dt~----------------R~gA~e----- 56 (213)
T d1vmaa2 4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEG-----KSVVLAAADTF----------------RAAAIE----- 56 (213)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTT-----CCEEEEEECTT----------------CHHHHH-----
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CCEEEEEECCC----------------CCCHHH-----
T ss_conf 767999998999989999988999999999999-779-----90699960133----------------420467-----
Q ss_pred HCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCHHHHHH
Q ss_conf 2316888219999974136898877958999999999980499899982888-8969999999
Q 000671 696 CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF-SAVDAHTAAT 757 (1361)
Q Consensus 696 c~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y~~~~i~lLDdp~-salD~~~~~~ 757 (1361)
+|...-+.+ |-.......+..+ -.-.+-..+.+..++.|++|.|=+= +.-|...-..
T Consensus 57 -QL~~~a~~l--~i~~~~~~~~~d~--~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~e 114 (213)
T d1vmaa2 57 -QLKIWGERV--GATVISHSEGADP--AAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEE 114 (213)
T ss_dssp -HHHHHHHHH--TCEEECCSTTCCH--HHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHH
T ss_pred -HHHHHHHHC--CCCCCCCCCCCCH--HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
T ss_conf -888776432--7641036777768--998788789998769998998245533016888899
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.49 E-value=0.15 Score=24.97 Aligned_cols=25 Identities=40% Similarity=0.518 Sum_probs=16.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699998699985899998882145
Q 000671 1243 GTRVGVVGRTGSGKTTLISALFRLV 1267 (1361)
Q Consensus 1243 GekVgIVGrTGSGKSTL~~~L~Rl~ 1267 (1361)
|-.|-++|.+||||||+.+.|.+.+
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9699988999999999999999999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=85.47 E-value=0.25 Score=23.31 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999858999988821
Q 000671 1245 RVGVVGRTGSGKTTLISALFR 1265 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~R 1265 (1361)
||.+||++|+|||||++.|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.42 E-value=0.2 Score=24.08 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCHHHHHHHH
Q ss_conf 3987553335823899998
Q 000671 980 KAPMLFFDSTPVGRILTRL 998 (1361)
Q Consensus 980 r~p~sfFd~tp~GrIlnRf 998 (1361)
.-.+.+|=..|....+.|.
T Consensus 152 ~Pdl~i~Ld~~pe~~~~Ri 170 (241)
T d1p5zb_ 152 ELDGIIYLQATPETCLHRI 170 (241)
T ss_dssp CCSEEEEEECCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHH
T ss_conf 8765543145889999999
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=85.38 E-value=0.26 Score=23.15 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 8999588998977899998299658871
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIPKISG 652 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~~~~G 652 (1361)
-+.|+|++|||||+++..++-..-...+
T Consensus 52 H~~I~G~tGsGKT~~l~~li~~~~~~g~ 79 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELAYTGLLRGD 79 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 5899907999689999999999984799
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=85.28 E-value=0.26 Score=23.19 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999986999858999988821
Q 000671 1244 TRVGVVGRTGSGKTTLISALFR 1265 (1361)
Q Consensus 1244 ekVgIVGrTGSGKSTL~~~L~R 1265 (1361)
=||+|||++|+|||||++.+..
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 2999999999899999999967
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.15 E-value=0.7 Score=19.67 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|..|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=84.96 E-value=0.35 Score=22.14 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.+.|+|+.||||||+...|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=84.87 E-value=0.35 Score=22.09 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899958899897789999829965
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
.++|-||+||||||..+.|.-++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.87 E-value=0.35 Score=22.11 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|+.|+|||||++.+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.86 E-value=0.32 Score=22.44 Aligned_cols=23 Identities=39% Similarity=0.587 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++++|..|+|||||++.+.+.-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999967899999998688
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.84 E-value=0.36 Score=21.99 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|..|+|||||++.+++.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.83 E-value=0.33 Score=22.34 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|..|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.80 E-value=0.32 Score=22.43 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899958899897789999829965
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
.++++|..|+|||||++.+.+.-.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=84.79 E-value=0.36 Score=22.04 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|+.|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=84.70 E-value=0.25 Score=23.26 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.+.|.||.||||||+...|.-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=84.65 E-value=0.45 Score=21.23 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0899958899897789999829965
Q 000671 624 QKIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
.-+..+||+|+|||.|.+++..++.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 6699989999888899999862132
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=84.63 E-value=0.42 Score=21.43 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0896999986999858999988821
Q 000671 1241 SEGTRVGVVGRTGSGKTTLISALFR 1265 (1361)
Q Consensus 1241 ~~GekVgIVGrTGSGKSTL~~~L~R 1265 (1361)
++.=||.+||+.|+|||||++.|..
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9857999999999898999999966
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=84.60 E-value=0.37 Score=21.88 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 58999999999980499
Q 000671 722 GGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 722 GGQkqRi~LARA~y~~~ 738 (1361)
-|.-.|-.||+.+..++
T Consensus 62 d~~i~r~~l~~~vf~~~ 78 (205)
T d1jjva_ 62 QGELNRAALRERVFNHD 78 (205)
T ss_dssp ----CHHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHH
T ss_conf 88652898864410013
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=84.52 E-value=0.39 Score=21.73 Aligned_cols=144 Identities=15% Similarity=0.059 Sum_probs=63.0
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 85188089995889989778999982996588718999293999925776898888899623999998999999998231
Q 000671 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACAL 698 (1361)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~~~d~~~y~~vi~~c~L 698 (1361)
-+++|+++.|.|++|+|||+|..-++.......+ ..+.|++-+.- ...++....- ..++.+.+.. .-..
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~-----~~~~~~s~e~~--~~~~~~~~~~-~~~~~~~~~~---~~~~ 90 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD-----EPGVFVTFEET--PQDIIKNARS-FGWDLAKLVD---EGKL 90 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC-----CCEEEEESSSC--HHHHHHHHGG-GTCCHHHHHH---TTSE
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-----CCCCCCCCCCC--HHHHHHHHHH-CCCCHHHHHH---HCCH
T ss_conf 9969839999947999999999999999998568-----87420126679--9999999998-4998489887---1430
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHH-HHHHH-HHHHHC-CCCCEEEEECCCCCC----CHHHHHHHHHHHHHH-HCCCC
Q ss_conf 68882199999741368988779589-99999-999980-499899982888896----999999999999978-15995
Q 000671 699 DKDINNFDHGDLTEIGQRGLNLSGGQ-KQRIQ-LARAVY-NDADIYLFDDPFSAV----DAHTAATLFNECVMA-ALEKK 770 (1361)
Q Consensus 699 ~~dl~~lp~GD~T~IGe~G~~LSGGQ-kqRi~-LARA~y-~~~~i~lLDdp~sal----D~~~~~~i~~~~i~~-~l~~k 770 (1361)
.... .....+.-....... ..-+. +.+++. .++++++.|....-. +..........+... ...+.
T Consensus 91 -~~~~------~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (242)
T d1tf7a1 91 -FILD------ASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGA 163 (242)
T ss_dssp -EEEE------CCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred -HHHH------HCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf -2444------210335444430245899999999998863122200207889987605726789999999999986397
Q ss_pred EEEEECCCCH
Q ss_conf 8999826702
Q 000671 771 TVILVTHQVE 780 (1361)
Q Consensus 771 T~ilvth~~~ 780 (1361)
|++++.|...
T Consensus 164 ~~~~~~~~~~ 173 (242)
T d1tf7a1 164 TTVMTTERIE 173 (242)
T ss_dssp EEEEEEECSS
T ss_pred CEEEEECCCC
T ss_conf 1688421025
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=84.52 E-value=0.34 Score=22.23 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=13.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699985899998882145
Q 000671 1245 RVGVVGRTGSGKTTLISALFRLV 1267 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl~ 1267 (1361)
.|-++|++||||||+.++|..-+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=84.43 E-value=0.42 Score=21.45 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=25.1
Q ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5188089995889989778999982996
Q 000671 620 IKWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 620 i~~G~~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
+++|+++.|.|++|+|||++..-+.-..
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6288599999179999899999999999
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=84.41 E-value=0.19 Score=24.25 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699998699985899998882145
Q 000671 1243 GTRVGVVGRTGSGKTTLISALFRLV 1267 (1361)
Q Consensus 1243 GekVgIVGrTGSGKSTL~~~L~Rl~ 1267 (1361)
.-+|+|||++++|||||+++|.+--
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.40 E-value=0.38 Score=21.83 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEECCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 885188089995889989778999982
Q 000671 618 LDIKWAQKIAVCGSVGAGKSSLLYAIL 644 (1361)
Q Consensus 618 l~i~~G~~~~ivG~~GsGKStLl~~il 644 (1361)
+++.++ +++++|++||||||+|.||.
T Consensus 20 i~f~~~-lnvlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 20 IGFSDR-VTAIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp EECCSS-EEEEECCTTTCSTHHHHHHH
T ss_pred EECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 967998-19999999984899999999
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.35 E-value=0.39 Score=21.71 Aligned_cols=21 Identities=33% Similarity=0.733 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899958899897789999829
Q 000671 625 KIAVCGSVGAGKSSLLYAILG 645 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilg 645 (1361)
.++++|..|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.35 E-value=0.38 Score=21.79 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++|.|+.||||||+...|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.34 E-value=0.37 Score=21.88 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++++|+.|+|||||++.+++.-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999939999999996299
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=84.20 E-value=0.32 Score=22.46 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=28.6
Q ss_pred CEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1148851880899958899897789999829965
Q 000671 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 615 ~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
|.=+.+.+|+..+|.|+.|+|||+|+..+.....
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4125645787556867999887899999999775
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.20 E-value=0.51 Score=20.80 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=18.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 08969999869998589999888214
Q 000671 1241 SEGTRVGVVGRTGSGKTTLISALFRL 1266 (1361)
Q Consensus 1241 ~~GekVgIVGrTGSGKSTL~~~L~Rl 1266 (1361)
+.-+-|-+||..||||||++..|+.-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99989999899999899999999976
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.11 E-value=0.4 Score=21.68 Aligned_cols=24 Identities=42% Similarity=0.718 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHH-CCCC
Q ss_conf 89995889989778999982-9965
Q 000671 625 KIAVCGSVGAGKSSLLYAIL-GEIP 648 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~il-ge~~ 648 (1361)
.++++|..|+|||||++.+. |+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~~ 28 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRFP 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999999992989999999739998
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.97 E-value=0.24 Score=23.42 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=24.0
Q ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5188089995889989778999982996
Q 000671 620 IKWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 620 i~~G~~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
++++..+.+.||.||||||+.+.|.-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.96 E-value=0.39 Score=21.77 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=24.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 18808999588998977899998299658
Q 000671 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPK 649 (1361)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilge~~~ 649 (1361)
.+|.++++-|.-||||||+...+.-.+..
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 97689999899888699999999999971
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.93 E-value=0.52 Score=20.72 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999588998977899998299658
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIPK 649 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~~ 649 (1361)
+++++|..|+|||||++.+.+....
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999998992999999999728677
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.90 E-value=0.39 Score=21.73 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089995889989778999982996
Q 000671 624 QKIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
-.++|+|...+|||||++++.+.-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 379997899998999999997789
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=83.77 E-value=0.39 Score=21.77 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9995889989778999982996
Q 000671 626 IAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 626 ~~ivG~~GsGKStLl~~ilge~ 647 (1361)
++++|+.||||||+.+.+...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=83.72 E-value=0.4 Score=21.67 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=17.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf 9998288889699999999999997815995899982670278
Q 000671 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL 782 (1361)
Q Consensus 740 i~lLDdp~salD~~~~~~i~~~~i~~~l~~kT~ilvth~~~~l 782 (1361)
+++.| +..++.+.+.+++ +.+. ..++.+|++-+..+.+
T Consensus 98 ilVvd-a~~g~~~~~~~~~-~~~~---~~~~p~iivlNK~D~~ 135 (227)
T d1g7sa4 98 ILIVD-INEGFKPQTQEAL-NILR---MYRTPFVVAANKIDRI 135 (227)
T ss_dssp EEEEE-TTTCCCHHHHHHH-HHHH---HTTCCEEEEEECGGGS
T ss_pred EEEEE-CCCCCCCCHHHHH-HHHH---CCCCEEEEEEECCCCC
T ss_conf 99986-1237632025777-7764---3797599999893078
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=83.68 E-value=0.44 Score=21.29 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9995889989778999982996
Q 000671 626 IAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 626 ~~ivG~~GsGKStLl~~ilge~ 647 (1361)
++|+|.+.+|||||+.+|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.66 E-value=0.33 Score=22.35 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=29.9
Q ss_pred EEEEEEECCCCCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 83379727999987322114885188089995889989778999982996
Q 000671 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 598 ~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
+++.+..+++. -..|+.++ .+=..++|+|+.++|||+||+.++|..
T Consensus 11 ~~~~l~~~~e~-l~~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 11 TNGRLMANPEA-LKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp ETTEEEECHHH-HHHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCEEEECHHH-HHHHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99949989999-99997079---987999988999997999999980998
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=83.62 E-value=0.27 Score=23.03 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=20.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 808999588998977899998299
Q 000671 623 AQKIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~ilge 646 (1361)
.-.++++|+.|+|||||++.+.+.
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 689999999999889999887338
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.56 E-value=0.35 Score=22.06 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999858999988821
Q 000671 1245 RVGVVGRTGSGKTTLISALFR 1265 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~R 1265 (1361)
||++||++|+|||||++.|.+
T Consensus 2 KI~liG~~nvGKSSLln~l~~ 22 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKN 22 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999999999999958
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.46 E-value=0.35 Score=22.12 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEE--EECCCCCCCHH-HHHHHHHHHHH-HHC-CCCEEEEECCCCHH
Q ss_conf 779589999999999804998999--82888896999-99999999997-815-99589998267027
Q 000671 719 NLSGGQKQRIQLARAVYNDADIYL--FDDPFSAVDAH-TAATLFNECVM-AAL-EKKTVILVTHQVEF 781 (1361)
Q Consensus 719 ~LSGGQkqRi~LARA~y~~~~i~l--LDdp~salD~~-~~~~i~~~~i~-~~l-~~kT~ilvth~~~~ 781 (1361)
...|..+.|....+..+..++.++ .|-.-..-+.. ....+.+.+.. ..+ ++..++++-+..+.
T Consensus 53 d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl 120 (207)
T d2fh5b1 53 DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120 (207)
T ss_dssp ECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTS
T ss_pred ECCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 02112343301566655430556347776665345999999999999768875158947999988546
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.42 E-value=0.56 Score=20.49 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=15.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 608969999869998589999888
Q 000671 1240 FSEGTRVGVVGRTGSGKTTLISAL 1263 (1361)
Q Consensus 1240 I~~GekVgIVGrTGSGKSTL~~~L 1263 (1361)
+++|+.+-|.|++|+||||++.-+
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~ 54 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTL 54 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 869969999838999889999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=83.33 E-value=0.54 Score=20.61 Aligned_cols=43 Identities=26% Similarity=0.289 Sum_probs=29.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC-CC-CCCEEEECCEECCC
Q ss_conf 089699998699985899998882145-79-99679996963899
Q 000671 1241 SEGTRVGVVGRTGSGKTTLISALFRLV-EP-AGGSILIDGVDICS 1283 (1361)
Q Consensus 1241 ~~GekVgIVGrTGSGKSTL~~~L~Rl~-e~-~~G~I~IDGvDI~~ 1283 (1361)
+.|..|-+.|.+|||||||...|.+-. +. .--.+.+||-++++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 998699998999999899999999887774275089975367887
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.30 E-value=0.44 Score=21.29 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=7.8
Q ss_pred CCCCEEEEECCCC
Q ss_conf 4998999828888
Q 000671 736 NDADIYLFDDPFS 748 (1361)
Q Consensus 736 ~~~~i~lLDdp~s 748 (1361)
.+.+++++|....
T Consensus 84 ~~~~~vi~d~~~~ 96 (213)
T d1bifa1 84 EGGHVAVFDATNT 96 (213)
T ss_dssp TCCSEEEEESCCC
T ss_pred CCCCEEEEECCCC
T ss_conf 1898898606776
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=83.28 E-value=0.37 Score=21.87 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089995889989778999982996
Q 000671 624 QKIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
+.+.++|+.||||||+.+.+.-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=83.25 E-value=0.29 Score=22.71 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=28.8
Q ss_pred EEEECCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 488518808999588998977899998299658871899929399992577
Q 000671 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS 667 (1361)
Q Consensus 617 ~l~i~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~p 667 (1361)
|++-++-..++++||+|+||||-+.-+.-.+.. +| .+++.+.-+.
T Consensus 3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~-~g-----~kV~lit~Dt 47 (211)
T d2qy9a2 3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ-QG-----KSVMLAAGDT 47 (211)
T ss_dssp CCCSCTTEEEEEECCTTSCHHHHHHHHHHHHHT-TT-----CCEEEECCCT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CC-----CCEEEEECCC
T ss_conf 778999979999899999989999999999997-79-----9479982321
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.21 E-value=0.4 Score=21.64 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.18 E-value=0.38 Score=21.86 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=18.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 6999986999858999988821457999679996
Q 000671 1244 TRVGVVGRTGSGKTTLISALFRLVEPAGGSILID 1277 (1361)
Q Consensus 1244 ekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~ID 1277 (1361)
..|.|+|+.||||||++..|..-| |-+.|+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 289998999999899999999985----990885
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.15 E-value=0.13 Score=25.45 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
-++++|.+++|||||+.+|++..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~~ 27 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYVA 27 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999478984999999999985
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=83.09 E-value=0.42 Score=21.47 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++++|+.||||||..+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=83.09 E-value=0.45 Score=21.23 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998589999888214
Q 000671 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl 1266 (1361)
.|||+|...+|||||+.+|.+.
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999934588499999999703
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.92 E-value=0.43 Score=21.41 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|..|+|||||+..+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.74 E-value=0.47 Score=21.04 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|..|+|||||++.+++.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.69 E-value=0.43 Score=21.38 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=82.68 E-value=0.51 Score=20.79 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899958899897789999829965
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
.++|-||.||||+|.-+.|...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.59 E-value=0.33 Score=22.26 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=82.57 E-value=0.48 Score=21.01 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 880899958899897789999829965
Q 000671 622 WAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1361)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilge~~ 648 (1361)
.+..+.|.|+.|+|||||+..++.+..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 598799986999829999999999779
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=82.55 E-value=0.43 Score=21.42 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=15.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869998589999888214
Q 000671 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl 1266 (1361)
.|||+|..||||||++..|-.+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.48 E-value=0.51 Score=20.81 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.47 E-value=0.44 Score=21.27 Aligned_cols=21 Identities=43% Similarity=0.648 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899958899897789999829
Q 000671 625 KIAVCGSVGAGKSSLLYAILG 645 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilg 645 (1361)
.++++|..|+|||||+..+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.43 E-value=0.51 Score=20.79 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|..|+|||||+..+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=82.37 E-value=0.83 Score=19.10 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=13.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 08969999869998589999888
Q 000671 1241 SEGTRVGVVGRTGSGKTTLISAL 1263 (1361)
Q Consensus 1241 ~~GekVgIVGrTGSGKSTL~~~L 1263 (1361)
.||+.+-|+|++|+||||++..|
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~l 49 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQL 49 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHH
T ss_conf 58958999928999899999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=82.34 E-value=0.65 Score=19.93 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=23.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHH-HHCCCCCCCCEEEE
Q ss_conf 60896999986999858999988-82145799967999
Q 000671 1240 FSEGTRVGVVGRTGSGKTTLISA-LFRLVEPAGGSILI 1276 (1361)
Q Consensus 1240 I~~GekVgIVGrTGSGKSTL~~~-L~Rl~e~~~G~I~I 1276 (1361)
+++|+.+-|.|++|+|||+++.- +....-.....+.+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~ 60 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 60 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 96983999994799999999999999999856887420
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=82.21 E-value=0.54 Score=20.60 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0899958899897789999829
Q 000671 624 QKIAVCGSVGAGKSSLLYAILG 645 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilg 645 (1361)
.+++|+|+.||||||..+.+..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.90 E-value=0.53 Score=20.64 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899958899897789999829
Q 000671 625 KIAVCGSVGAGKSSLLYAILG 645 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilg 645 (1361)
.++++|+.|+|||||+..+++
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=81.86 E-value=0.68 Score=19.79 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=23.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8808999588998977899998299658
Q 000671 622 WAQKIAVCGSVGAGKSSLLYAILGEIPK 649 (1361)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilge~~~ 649 (1361)
++-.++|+|...+|||||++++.|.-..
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~ 138 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNIA 138 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCEE
T ss_conf 7527899866754435554254266158
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.77 E-value=0.31 Score=22.57 Aligned_cols=22 Identities=27% Similarity=0.619 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|..|+|||||+..+++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=81.69 E-value=0.69 Score=19.72 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=26.2
Q ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8518808999588998977899998299658
Q 000671 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPK 649 (1361)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~ilge~~~ 649 (1361)
..++|..+.+.|+.|||||||.+.++..+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.64 E-value=0.5 Score=20.88 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 08999588998977899998299
Q 000671 624 QKIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilge 646 (1361)
.+++++|..|+|||||+..+.+.
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998993889999999719
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.44 E-value=0.49 Score=20.95 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC
Q ss_conf 89995889989778999982--99658871
Q 000671 625 KIAVCGSVGAGKSSLLYAIL--GEIPKISG 652 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~il--ge~~~~~G 652 (1361)
++.++|..|+|||||++-+- -...|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.31 E-value=0.55 Score=20.54 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++|+|+.|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.26 E-value=0.58 Score=20.35 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.++++|..|+|||||++.+.+.-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989908899999997199
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.01 E-value=0.43 Score=21.41 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9995889989778999982996
Q 000671 626 IAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 626 ~~ivG~~GsGKStLl~~ilge~ 647 (1361)
++++|+.||||||+.+.+...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=80.89 E-value=0.18 Score=24.35 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=50.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHH
Q ss_conf 18808999588998977899998299658871899929399992577689888889962399999899999999823168
Q 000671 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700 (1361)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilge~~~~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~~~d~~~y~~vi~~c~L~~ 700 (1361)
++...++++||+|+||||.+.-|.-.+.. .| .+++.+.=+.+-.. -.+ +|..
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~-~g-----~kV~lit~Dt~R~g----------------a~e------QL~~ 61 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKK-KG-----FKVGLVGADVYRPA----------------ALE------QLQQ 61 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHH-TT-----CCEEEEECCCSSHH----------------HHH------HHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CC-----CCEEEEEEECCCCC----------------HHH------HHHH
T ss_conf 99989999899999989999999999997-79-----93699972023551----------------567------8987
Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCH
Q ss_conf 88219999974136898877958999999999980499899982888-89699
Q 000671 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF-SAVDA 752 (1361)
Q Consensus 701 dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA~y~~~~i~lLDdp~-salD~ 752 (1361)
.-+.+ |-.....+....+ -.-.+=++..+...+.|+++.|=|= +..|.
T Consensus 62 ~a~~l--~v~~~~~~~~~~~--~~~~~~a~~~~~~~~~d~IlIDTaGr~~~~~ 110 (211)
T d1j8yf2 62 LGQQI--GVPVYGEPGEKDV--VGIAKRGVEKFLSEKMEIIIVDTAGRHGYGE 110 (211)
T ss_dssp HHHHH--TCCEECCTTCCCH--HHHHHHHHHHHHHTTCSEEEEECCCSCCTTC
T ss_pred HCCCC--CCCEEECCCCHHH--HHHHHHHHHHHHCCCCCEEEEECCCCCCCCH
T ss_conf 40146--8422302441024--4789999987402677369985377676313
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=80.88 E-value=0.56 Score=20.44 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 08999588998977899998299658
Q 000671 624 QKIAVCGSVGAGKSSLLYAILGEIPK 649 (1361)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilge~~~ 649 (1361)
++++|.|+.||||||+.+.|...+..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.83 E-value=0.46 Score=21.12 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999588998977899998299658
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIPK 649 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~~ 649 (1361)
...+.||+|+||||+..++..++..
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 4999879999888999999999875
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=80.82 E-value=0.57 Score=20.39 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 96999986999858999988821
Q 000671 1243 GTRVGVVGRTGSGKTTLISALFR 1265 (1361)
Q Consensus 1243 GekVgIVGrTGSGKSTL~~~L~R 1265 (1361)
.=||.+||+.|+|||||++.+..
T Consensus 16 ~~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 16 EVRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHC
T ss_conf 77999999999899999999964
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=80.76 E-value=0.71 Score=19.66 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=15.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 6089699998699985899998882
Q 000671 1240 FSEGTRVGVVGRTGSGKTTLISALF 1264 (1361)
Q Consensus 1240 I~~GekVgIVGrTGSGKSTL~~~L~ 1264 (1361)
+++|+-+-|.|++|+|||+++.-+.
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 6288599999179999899999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.76 E-value=0.65 Score=19.92 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999858999988821
Q 000671 1245 RVGVVGRTGSGKTTLISALFR 1265 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~R 1265 (1361)
||.+||+.|+|||||++.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=80.74 E-value=0.56 Score=20.49 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=7.8
Q ss_pred EECCCCCCHHHHHHHHHCC
Q ss_conf 9869998589999888214
Q 000671 1248 VVGRTGSGKTTLISALFRL 1266 (1361)
Q Consensus 1248 IVGrTGSGKSTL~~~L~Rl 1266 (1361)
|.|..||||||+++.|...
T Consensus 6 i~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 6 VTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEECTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
T ss_conf 9898998989999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=80.64 E-value=0.65 Score=19.95 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 58999999999980499
Q 000671 722 GGQKQRIQLARAVYNDA 738 (1361)
Q Consensus 722 GGQkqRi~LARA~y~~~ 738 (1361)
.|.-.|-.|+..+..++
T Consensus 63 ~~~i~r~~L~~~vf~~~ 79 (208)
T d1vhta_ 63 DGTLQRRALRERIFANP 79 (208)
T ss_dssp TSCBCHHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHH
T ss_conf 86520012466652138
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.59 E-value=0.69 Score=19.73 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999986999858999988821-----4579996
Q 000671 1245 RVGVVGRTGSGKTTLISALFR-----LVEPAGG 1272 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~R-----l~e~~~G 1272 (1361)
||.+||.+|+|||||++.+.+ -+.|..|
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~ 39 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG 39 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999999999198999999973988865145555
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.43 E-value=0.75 Score=19.43 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=25.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC-----EEEECCE
Q ss_conf 999986999858999988821-----4579996-----7999696
Q 000671 1245 RVGVVGRTGSGKTTLISALFR-----LVEPAGG-----SILIDGV 1279 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~R-----l~e~~~G-----~I~IDGv 1279 (1361)
||.+||.+|+|||||++.+.. -++|+-| .+.+||.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~ 48 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKS 48 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCEEECCC
T ss_conf 899999899798999999970999876376133101121000220
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=80.40 E-value=0.66 Score=19.90 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=13.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999858999988821
Q 000671 1245 RVGVVGRTGSGKTTLISALFR 1265 (1361)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~R 1265 (1361)
+|+|-|+.||||||+...|..
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789998798999999999
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| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.32 E-value=0.5 Score=20.89 Aligned_cols=73 Identities=19% Similarity=0.201 Sum_probs=37.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCCEECCCCCCCCCCHHHHCCCCCCCCH
Q ss_conf 60896999986999858999988821457999679996963899994788511914347653334540541599999999
Q 000671 1240 FSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSD 1319 (1361)
Q Consensus 1240 I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR~~isiIpQdp~LF~GTIR~NLdP~~~~sD 1319 (1361)
++.+..|-|.|+.||||||++..|..-| |-..|+.-| -+|..+. ..+. ..-.+.+.++.....+|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~~---~~~~-~~~~~~~~~~~~~~~~~ 69 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEVS---SGSA-RGKMLSEIMEKGQLVPL 69 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHHH---HTCH-HHHHHHHHHTTTCCCCH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCH-------HHHHHHH---HHHH-HHHHHHHHHHHCCCCCH
T ss_conf 4678289998999998799999999986----984683347-------8999998---7676-51456777763137762
Q ss_pred HHHHHHHH
Q ss_conf 99999996
Q 000671 1320 DEIWKVSQ 1327 (1361)
Q Consensus 1320 eeI~~AL~ 1327 (1361)
+.+...++
T Consensus 70 ~~~~~~~~ 77 (194)
T d3adka_ 70 ETVLDMLR 77 (194)
T ss_dssp HHHHHHHH
T ss_pred HEEEEEHH
T ss_conf 22441024
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=80.27 E-value=0.65 Score=19.95 Aligned_cols=10 Identities=20% Similarity=0.328 Sum_probs=3.5
Q ss_pred EEEECCCCCC
Q ss_conf 9982888896
Q 000671 741 YLFDDPFSAV 750 (1361)
Q Consensus 741 ~lLDdp~sal 750 (1361)
++..|..+++
T Consensus 139 ~~viDs~~~~ 148 (254)
T d1pzna2 139 LLIVDSLTSH 148 (254)
T ss_dssp EEEEETSSTT
T ss_pred EEEECCHHHE
T ss_conf 6860311210
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.23 E-value=0.67 Score=19.82 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999588998977899998299
Q 000671 625 KIAVCGSVGAGKSSLLYAILGE 646 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge 646 (1361)
.++++|..|+|||||++.+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.13 E-value=0.68 Score=19.78 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999588998977899998299658
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEIPK 649 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~~~ 649 (1361)
+++|-|..||||||+++.|...+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.11 E-value=0.71 Score=19.66 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89995889989778999982996
Q 000671 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1361)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilge~ 647 (1361)
.+.|.|+.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|