Citrus Sinensis ID: 000680
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1354 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LGU1 | 1464 | ABC transporter C family | yes | no | 0.985 | 0.911 | 0.649 | 0.0 | |
| Q9LYS2 | 1453 | ABC transporter C family | no | no | 0.946 | 0.881 | 0.426 | 0.0 | |
| Q7GB25 | 1514 | ABC transporter C family | no | no | 0.912 | 0.816 | 0.415 | 0.0 | |
| Q9M1C7 | 1506 | ABC transporter C family | no | no | 0.973 | 0.875 | 0.390 | 0.0 | |
| Q9LK64 | 1514 | ABC transporter C family | no | no | 0.841 | 0.752 | 0.429 | 0.0 | |
| Q8VZZ4 | 1466 | ABC transporter C family | no | no | 0.929 | 0.858 | 0.396 | 0.0 | |
| Q9LK62 | 1493 | ABC transporter C family | no | no | 0.840 | 0.762 | 0.406 | 0.0 | |
| Q9LZJ5 | 1539 | ABC transporter C family | no | no | 0.930 | 0.818 | 0.376 | 0.0 | |
| Q7DM58 | 1516 | ABC transporter C family | no | no | 0.926 | 0.827 | 0.383 | 0.0 | |
| Q7FB56 | 1053 | Putative ABC transporter | no | no | 0.681 | 0.876 | 0.433 | 0.0 |
| >sp|Q8LGU1|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 1699 bits (4399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 878/1351 (64%), Positives = 1059/1351 (78%), Gaps = 16/1351 (1%)
Query: 4 LGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRRE 63
+ +G L W C+ E +L S C Q T I +NL+F C+FYL L+ S H R R++
Sbjct: 1 MAAFIGSLPW-CDVELNLASSCFQRTAIAFVNLLFLCIFYL-FLIASCVSTHFIVRGRKK 58
Query: 64 -CVSIVVSACCAVVGIAYLGYCLWNLI-AKND-SSMSWLVSTVRGLIWVSLAISLLVKRS 120
+ + V+ CCA+ +LG L +LI ND + +SW+ V G+IWVSLA+SLLV S
Sbjct: 59 GWIFVAVAICCAITSFIFLGVGLNSLIHGGNDVTEISWVACFVEGIIWVSLAVSLLVNGS 118
Query: 121 KWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSP 180
KW+ +L+++WW+SF+LL L IL + I ++ IL LP++LLLL ++ N +S
Sbjct: 119 KWVNILVSVWWVSFALLDLVAKSGILLQGNGIRILDILTLPMSLLLLLCSWMNLRS-SSA 177
Query: 181 NREDKS---LSEPLLAE---KNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSL 234
+D S LS+PLL + K L AG L+FSW+NPLLSLG+ KPL+ EDIPS+
Sbjct: 178 AAQDCSVTGLSDPLLTKNPRKESARLATAGFFSILSFSWMNPLLSLGFKKPLSPEDIPSV 237
Query: 235 VPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVV 294
VPEDEA AY+KF+ AWD+L+ + +S NLV + + VY KENIFIA+ A LRT AVV
Sbjct: 238 VPEDEAQLAYKKFSQAWDTLLGDESSTKERNLVFRAVVKVYFKENIFIAVFAFLRTFAVV 297
Query: 295 VGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354
PL+LY FV+Y+N +L+ G + CL++ K+VES T RH +F SRRSGMR+RSALM
Sbjct: 298 SLPLMLYVFVDYANSDHRDLRNGFFNLACLVMLKLVESLTMRHWYFASRRSGMRIRSALM 357
Query: 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFG 414
VA Y+KQLKLSSLGRK+HS+GEIVNYIAVDAYRMGEF +WFH WSL+LQL L+ VLFG
Sbjct: 358 VAAYKKQLKLSSLGRKRHSSGEIVNYIAVDAYRMGEFLWWFHSGWSLSLQLLLSTAVLFG 417
Query: 415 VVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSW 474
VVG GA PGL+L L+CGLLN+PFAK+LQ CQ++FMIAQD+RLRSTSEILN+MK+IKLQSW
Sbjct: 418 VVGAGAFPGLILLLLCGLLNLPFAKMLQNCQTQFMIAQDKRLRSTSEILNSMKVIKLQSW 477
Query: 475 EEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNAST 534
E++FK IES R+ EF WL++AQL KA+G+ +YWMSPTI+SSV+FLGCAL SAPLNAST
Sbjct: 478 EDEFKKKIESCRDDEFTWLAKAQLTKAFGSFLYWMSPTIVSSVVFLGCALLKSAPLNAST 537
Query: 535 IFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594
IFTVLATLR M EPV++IP+A+S +IQ VSF R+N FLLD EL D++ R L S +
Sbjct: 538 IFTVLATLRVMSEPVKIIPDAISAIIQGNVSFQRLNNFLLDDELKMDEIERSGLDASGTA 597
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
V IQ GNF W+PE IPTLR ++L+IK QK+AVCG VGAGKSSLL+A+LGEIPK+SGTV
Sbjct: 598 VDIQVGNFGWEPETKIPTLRNIHLEIKHGQKVAVCGPVGAGKSSLLHAVLGEIPKVSGTV 657
Query: 655 NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714
++GSIAYVSQTSWIQSG+IRDNILYGKPM+ RY+ AIKACALDKD+N F HGDLTEIG
Sbjct: 658 KVFGSIAYVSQTSWIQSGTIRDNILYGKPMESRRYNAAIKACALDKDMNGFGHGDLTEIG 717
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL 774
QRG+NLSGGQKQRIQLARAVY DAD+YL DDPFSAVDAHTA LF++CV +L++KTVIL
Sbjct: 718 QRGINLSGGQKQRIQLARAVYADADVYLLDDPFSAVDAHTAGVLFHKCVEDSLKEKTVIL 777
Query: 775 VTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQ 834
VTHQVEFLSEVD+ILV+E G ITQSG Y+ELL+ GTAF+QLVNAH DA+T L N
Sbjct: 778 VTHQVEFLSEVDQILVMEEGTITQSGKYEELLMMGTAFQQLVNAHNDAVTVLPLASNESL 837
Query: 835 GGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLN 894
G K K R R N K E E + QLT++EE E G VG KPF+DY+
Sbjct: 838 GDLRKEGKDREIR----NMTVVEKIEEEIEKTDIPGVQLTQEEEKESGYVGMKPFLDYIG 893
Query: 895 VSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYF 954
VS+G LL VL Q GFV QAA+TYWLA+AI IPKIT+ +LIGVY+ +ST SA FVY
Sbjct: 894 VSRGWCLLWSSVLGQVGFVVFQAASTYWLAFAIGIPKITNTMLIGVYSIISTLSAGFVYA 953
Query: 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIV 1014
R+ AHLGLKASKAFFSGFTN++FKAPMLFFDSTPVGRILTR SSDL++LD+D+PF+ +
Sbjct: 954 RAITTAHLGLKASKAFFSGFTNAVFKAPMLFFDSTPVGRILTRASSDLNVLDYDVPFAFI 1013
Query: 1015 FVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVM 1074
FV A EL A + IMT+VTWQV+++A+ A+ A + VQ YY+A+ARELIRINGTTKAPVM
Sbjct: 1014 FVVAPAVELTAALLIMTYVTWQVIIIALLALAATKVVQDYYLASARELIRINGTTKAPVM 1073
Query: 1075 NYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLF 1134
NY AETS GVVTIRAF +RFF+NYL LVD DA LFF +N MEW+ILR+E LQN+TLF
Sbjct: 1074 NYAAETSLGVVTIRAFGTAERFFKNYLNLVDADAVLFFLSNAAMEWVILRIETLQNVTLF 1133
Query: 1135 TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIP 1194
T AL L+LIP+GY+APGLVGLSLSYA TLT TQVFL+RWYC L+N IISVERIKQ+M+IP
Sbjct: 1134 TCALLLILIPKGYIAPGLVGLSLSYALTLTQTQVFLTRWYCTLSNSIISVERIKQYMNIP 1193
Query: 1195 PEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGS 1254
EPPAI++DKRPPSSWP G I L++LKIRYRPNAPLVLKGI+CTF EGTRVGVVGRTGS
Sbjct: 1194 EEPPAIIDDKRPPSSWPSNGTIHLQELKIRYRPNAPLVLKGISCTFREGTRVGVVGRTGS 1253
Query: 1255 GKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL 1314
GK+TLISALFRLVEPA G ILIDG+DI +GLKDLR+KLSIIPQEPTLFRG +RTNLDPL
Sbjct: 1254 GKSTLISALFRLVEPASGCILIDGIDISKIGLKDLRMKLSIIPQEPTLFRGCIRTNLDPL 1313
Query: 1315 GLYSDDEIWKALEKCQLKTTISSLPNKLDSS 1345
G+YSDDEIWKALEKCQLKTTIS+LPNKLDSS
Sbjct: 1314 GVYSDDEIWKALEKCQLKTTISNLPNKLDSS 1344
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q9LYS2|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1046 bits (2704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/1323 (42%), Positives = 814/1323 (61%), Gaps = 42/1323 (3%)
Query: 43 YLSLLVGSFRKNHNYGRIRRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSS--MSWLV 100
+L+L + F K + C+ +V + ++G L +W ++ +N S + WLV
Sbjct: 34 FLTLCICLFHKEPPKRIHQFFCLRLVSALFNGIIGSLDLVLGIW-VLRENHSKPLILWLV 92
Query: 101 STVRGLIWVSLAISLLVK----RSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVY 156
++G W+ + + + V+ R +R+L +++ + L+ L++ + V
Sbjct: 93 ILIQGFTWLFINLIICVRGTRIRKSSLRLL-SIFSFFYGLVSSCLSVNNAVFGDELAVRT 151
Query: 157 ILPLPVNLLLLFSAFRNFSHFTSPNREDKSLSEPLLA------------EKNQTELGKAG 204
IL + + + + + + SL EPL A + ++ KAG
Sbjct: 152 ILDVLLLPGSVLLLLSAYKGYRFDESGESSLYEPLNAGDSNGFSEKADFDNRVSQFAKAG 211
Query: 205 LLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNG 264
L L+F W+N L+ G K L EDIP L E+ A Y F R S+
Sbjct: 212 LFSTLSFWWLNSLIKRGNVKDLEEEDIPELRKEERAETCYSLFEENLIEQKRRLGSSCQP 271
Query: 265 NLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCL 324
++++ + V+ +E + A ++ +AV GPLLL AF+ + EGL + L
Sbjct: 272 SILKVTVLCVW-RELLTSGFFAFMKIVAVSAGPLLLNAFILVAEGNASFRYEGLVLAVLL 330
Query: 325 IITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVD 384
+K++ES +QR +F R G+R+RS L A+ +KQL+L++ R HS EI+NY VD
Sbjct: 331 FFSKMIESLSQRQWYFRCRIVGLRVRSLLTAAINKKQLRLNNSSRLIHSGSEIMNYATVD 390
Query: 385 AYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKC 444
AYR+GEFP+WFH W+ + QL +A+G+LF VG+ L + ++ L N P AK+ K
Sbjct: 391 AYRIGEFPYWFHQLWTTSFQLLIALGILFHSVGVATFSALAVIILTVLCNAPIAKLQNKF 450
Query: 445 QSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT 504
QSE M +QDERL++ +E L NMK++KL +WE FK +IE R E K L Q+RKAY
Sbjct: 451 QSELMTSQDERLKACNESLVNMKVLKLYAWESHFKKVIEKLRNIELKSLKAVQMRKAYNA 510
Query: 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKV 564
V++W SP +S+ F C PL AS +FT +ATLR + +PVRMIP+ + + IQ KV
Sbjct: 511 VLFWSSPVFVSAATFATCYFL-DIPLRASNVFTFVATLRLVQDPVRMIPDVIGVTIQAKV 569
Query: 565 SFDRINAFLLDHELNNDDVRRISLQKSDR-SVKIQEGNFSWDPELAI-PTLRGVNLDIKW 622
+F RI FL EL + RR + ++ ++ I+ +FSW+ + + P LR V+L++K+
Sbjct: 570 AFSRIATFLEAPELQGGERRRKQRSEGNQNAIIIKSASFSWEEKGSTKPNLRNVSLEVKF 629
Query: 623 AQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGK 682
+K+AVCG VG+GKS+LL AILGE P +SGT++ YG+IAYVSQT+WIQ+G+IRDNIL+G
Sbjct: 630 GEKVAVCGEVGSGKSTLLAAILGETPCVSGTIDFYGTIAYVSQTAWIQTGTIRDNILFGG 689
Query: 683 PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742
MD+ RY + I+ +LDKD+ GD TEIG+RG+NLSGGQKQRIQLARA+Y DADIYL
Sbjct: 690 VMDEHRYRETIQKSSLDKDLELLPDGDQTEIGERGVNLSGGQKQRIQLARALYQDADIYL 749
Query: 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802
DDPFSAVDAHTA++LF E VM AL K V+LVTHQV+FL D +L++ G+IT++ Y
Sbjct: 750 LDDPFSAVDAHTASSLFQEYVMDALAGKAVLLVTHQVDFLPAFDSVLLMSDGEITEADTY 809
Query: 803 QELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSE 862
QELL F+ LVNAHR+ G+E+V P +P R SS+
Sbjct: 810 QELLARSRDFQDLVNAHRET------------AGSERVVA--VENPTKPVKEINRVISSQ 855
Query: 863 GEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYW 922
+ V ++L + EE E GD G +P++ Y+N +KG + LAQ F Q W
Sbjct: 856 SK--VLKPSRLIKQEEREKGDTGLRPYIQYMNQNKGYIFFFIASLAQVTFAVGQILQNSW 913
Query: 923 LAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAP 982
+A + P++++ LI VY + S + + RS + +K+S + FS NS+F+AP
Sbjct: 914 MAANVDNPQVSTLKLILVYLLIGLCSVLCLMVRSVCVVIMCMKSSASLFSQLLNSLFRAP 973
Query: 983 MLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAI 1042
M F+DSTP+GRIL+R+SSDLSI+D D+PF ++FV AS +G++ VTWQVL V++
Sbjct: 974 MSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFVVASSVNTGCSLGVLAIVTWQVLFVSV 1033
Query: 1043 FAMVAVRF-VQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101
MV + F +Q+YY TA+EL+RINGTT++ V N+ AE+ G +TIRAF+ +RFF+ L
Sbjct: 1034 -PMVYLAFRLQKYYFQTAKELMRINGTTRSYVANHLAESVAGAITIRAFDEEERFFKKSL 1092
Query: 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAF 1161
L+D +AS FFH+ EWLI R+E + + L + A ++L+P G + G +G++LSY
Sbjct: 1093 TLIDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFCMILLPTGTFSSGFIGMALSYGL 1152
Query: 1162 TLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQL 1221
+L V+ + CYLAN+IISVER+ Q+ H+ PE P ++E+ RPP +WP GR+E+ L
Sbjct: 1153 SLNMGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPEVIEETRPPVNWPVTGRVEISDL 1212
Query: 1222 KIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDI 1281
+IRYR +PLVLKGI+CTF G ++G+VGRTGSGKTTLISALFRLVEP GG I++DGVDI
Sbjct: 1213 QIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPVGGKIVVDGVDI 1272
Query: 1282 CSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNK 1341
+G+ DLR + IIPQ+PTLF G+VR NLDPL +SD EIW+ L KCQLK + N
Sbjct: 1273 SKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSDAEIWEVLGKCQLKEVVQEKENG 1332
Query: 1342 LDS 1344
LDS
Sbjct: 1333 LDS 1335
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7GB25|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 999 bits (2583), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/1291 (41%), Positives = 770/1291 (59%), Gaps = 55/1291 (4%)
Query: 95 SMSWLVSTVRGLIWVSLAISLLVKRSKWIRMLITLWW-MSFSLLVLA-------LNIEIL 146
S++W V + L + L K S+ + L+ +WW ++FS+ + L IE
Sbjct: 120 SLAWFVLSF-------LVLHLKYKSSEKLPFLVRIWWFLAFSICLCTMYVDGRRLAIEGW 172
Query: 147 ARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPNREDKSLSEPLLAEKNQ-----TELG 201
+R + V + P L F A+R S R L EPLL E+ T
Sbjct: 173 SRCSSHVVANLAVTPALGFLCFLAWRGVSGIQV-TRSSSDLQEPLLVEEEAACLKVTPYS 231
Query: 202 KAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSN 261
AGL+ +T SW++PLLS G +PL L+DIP L P D A +Y+ W EN S
Sbjct: 232 TAGLVSLITLSWLDPLLSAGSKRPLELKDIPLLAPRDRAKSSYKVLKSNWKRCKSENPSK 291
Query: 262 NNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIV 321
+ + I + KE A+ A L T+ VGP L+ FV+Y E EG +
Sbjct: 292 PPS--LARAIMKSFWKEAACNAVFAGLNTLVSYVGPYLISYFVDYLGGKEIFPHEGYVLA 349
Query: 322 GCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYI 381
G +K++E+ T R + G GM +RSAL VY+K LKLSS+ ++ H++GEIVNY+
Sbjct: 350 GIFFTSKLIETVTTRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYM 409
Query: 382 AVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKIL 441
AVD R+G++ ++ H W L +Q+ LA+ +L+ VG+ A+ LV +I L+ +P AK+
Sbjct: 410 AVDVQRIGDYSWYLHDIWMLPMQIVLALAILYKSVGIAAVATLVATIISILVTIPLAKVQ 469
Query: 442 QKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA 501
+ Q + M A+DER+R TSE L NM+++KLQ+WE++++ +E RE+E+ WL +A +A
Sbjct: 470 EDYQDKLMTAKDERMRKTSECLRNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKALYSQA 529
Query: 502 YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQ 561
+ T I+W SP +++V F G+ L A + + LAT R + EP+R P+ +S+M Q
Sbjct: 530 FVTFIFWSSPIFVAAVTFATSIFLGTQ-LTAGGVLSALATFRILQEPLRNFPDLVSMMAQ 588
Query: 562 VKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIK 621
KVS DRI+ FL + EL D I S+ +++I++G F WDP + PTL G+ + ++
Sbjct: 589 TKVSLDRISGFLQEEELQEDATVVIPRGLSNIAIEIKDGVFCWDPFSSRPTLSGIQMKVE 648
Query: 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYG 681
++AVCG+VG+GKSS + ILGEIPKISG V + G+ YVSQ++WIQSG+I +NIL+G
Sbjct: 649 KGMRVAVCGTVGSGKSSFISCILGEIPKISGEVRICGTTGYVSQSAWIQSGNIEENILFG 708
Query: 682 KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741
PM+K +Y I+AC+L KDI F HGD T IG+RG+NLSGGQKQR+QLARA+Y DADIY
Sbjct: 709 SPMEKTKYKNVIQACSLKKDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDADIY 768
Query: 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801
L DDPFSA+DAHT + LF + +++AL +KTV+ VTHQVEFL D ILVL+ G+I QSG
Sbjct: 769 LLDDPFSALDAHTGSDLFRDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQSGK 828
Query: 802 YQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPR---- 857
Y +LL AGT F+ LV+AH +AI + + + E + + ++
Sbjct: 829 YDDLLQAGTDFKALVSAHHEAIEAMDIPSPSSEDSDENPIRDSLVLHNPKSDVFENDIET 888
Query: 858 --KESSEG--------------EISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSL 901
KE EG + QL ++EE G V K ++ Y+ + +L
Sbjct: 889 LAKEVQEGGSASDLKAIKEKKKKAKRSRKKQLVQEEERVKGKVSMKVYLSYMGAAYKGAL 948
Query: 902 LCLGVLAQSGFVGLQAAATYWLAYAI-----QIPKITSGILIGVYAGVSTASAVFVYFRS 956
+ L +LAQ+ F LQ A+ +W+A+A K+ +L+ VY ++ S+VF++ R+
Sbjct: 949 IPLIILAQAAFQFLQIASNWWMAWANPQTEGDESKVDPTLLLIVYTALAFGSSVFIFVRA 1008
Query: 957 FFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFV 1016
A GL A++ F S+F+APM FFDSTP GRIL R+S D S++D DIPF +
Sbjct: 1009 ALVATFGLAAAQKLFLNMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGF 1068
Query: 1017 AASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNY 1076
A++ +L I+ +MT VTWQV ++ + VA ++Q+YY+A++REL+RI K+P+++
Sbjct: 1069 ASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRIVSIQKSPIIHL 1128
Query: 1077 TAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA 1136
E+ G TIR F RF + L L+D FF + +EWL LR+E L L
Sbjct: 1129 FGESIAGAATIRGFGQEKRFIKRNLYLLDCFVRPFFCSIAAIEWLCLRMELLSTLVFAFC 1188
Query: 1137 ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRW---YCYLANYIISVERIKQFMHI 1193
+ LV P G + P + GL+++Y L G LSRW +C L N IIS+ERI Q+ I
Sbjct: 1189 MVLLVSFPHGTIDPSMAGLAVTYGLNLNGR---LSRWILSFCKLENKIISIERIYQYSQI 1245
Query: 1194 PPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTG 1253
E PAI+ED RPPSSWP G IEL +K+RY N P VL G++C F G ++G+VGRTG
Sbjct: 1246 VGEAPAIIEDFRPPSSWPATGTIELVDVKVRYAENLPTVLHGVSCVFPGGKKIGIVGRTG 1305
Query: 1254 SGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDP 1313
SGK+TLI ALFRL+EP G I ID +DI +GL DLR +L IIPQ+PTLF G++R NLDP
Sbjct: 1306 SGKSTLIQALFRLIEPTAGKITIDNIDISQIGLHDLRSRLGIIPQDPTLFEGTIRANLDP 1365
Query: 1314 LGLYSDDEIWKALEKCQLKTTISSLPNKLDS 1344
L +SDD+IW+AL+K QL + KLDS
Sbjct: 1366 LEEHSDDKIWEALDKSQLGDVVRGKDLKLDS 1396
|
Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 936 bits (2420), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/1366 (39%), Positives = 808/1366 (59%), Gaps = 48/1366 (3%)
Query: 22 GSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGR------IRRECVSIV------V 69
S C++ I + + F F + L + F N G ++++ +++ +
Sbjct: 25 NSLCLKERISIAMQVTFLAFFLIHLALKWFGVVRNRGSNDVEEDLKKQSITVKQSFSYNI 84
Query: 70 SACCAVVGIAYLGYCLW-----NLIAKNDSSMSWLVSTV-RGLIWVSLAISLL-VKRSKW 122
S C+V + + L +++++ DSS+S + V + W+ +++ ++ ++ +
Sbjct: 85 SLLCSVSILGTHCFILLLLFRDSVVSRCDSSVSVFSAEVSQSFSWLFVSVVVVKIRERRL 144
Query: 123 IRM--LITLWWMSFSLLVLALNIEILARTYT----INVVYILPLPVNLLLLFSAFRNFSH 176
++ ++ WW+ +L + + + + + + L +L LL + R +
Sbjct: 145 VKFPWMLRSWWLCSFILSFSFDAHFITAKHEPLEFQDYADLTGLLASLFLLAVSIRGKTG 204
Query: 177 FTSPNREDKSLSEPLL----AEKNQTE-------LGKAGLLRKLTFSWINPLLSLGYSKP 225
F E +EPLL E+N+ + G A L +++TFSWINPL SLGY +P
Sbjct: 205 FHL--LESSGNTEPLLLGDQTEQNKKDSYSSSSPYGNATLFQRITFSWINPLFSLGYKRP 262
Query: 226 LALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAIC 285
L +D+P + +D A F F + +E N V+ V+ K I A+
Sbjct: 263 LEKDDVPDIDVKDSARFCSHAFDQKLKT-TKEKEGPGNAFFYNSVLRYVWRKAAIN-AVF 320
Query: 286 ALLRTIAVVVGPLLLYAFVNY-SNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRR 344
A++ +GP L+ FV + S + ++L G + + K+VE+ TQR FG+R+
Sbjct: 321 AVVNASTAYIGPYLINDFVEFLSEKQSQSLNHGYLLALGFLTAKIVETVTQRQWIFGARQ 380
Query: 345 SGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQ 404
G+R+R+AL+ +YQK L LSS R+ H++GEI+NY++VD R+ +F ++ + W L +Q
Sbjct: 381 LGLRLRAALISHIYQKGLVLSSQSRQSHTSGEIINYMSVDVQRITDFIWYVNNIWMLPIQ 440
Query: 405 LFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILN 464
+F AI +L +GLGAL LV L+ N P ++ + QS+ M A+D+R+++TSEIL
Sbjct: 441 IFSAIYILQKHLGLGALAALVTTLMVMACNYPLTRLQRNYQSDIMNAKDDRMKATSEILK 500
Query: 465 NMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCAL 524
NMKI+KLQ+W+ +F + +++ R+KE+ L ++ +A+ T I W +P++IS V F+ C L
Sbjct: 501 NMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQAFTTFILWGAPSLISVVTFVTCML 560
Query: 525 TGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584
G L A + + LAT + + P+ +P+ LS ++Q KVS DRI ++L E D V
Sbjct: 561 MG-VKLTAGAVLSALATFQMLQSPIFGLPDLLSALVQSKVSADRIASYLQQSETQKDAVE 619
Query: 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL 644
S ++ SV+I+ G FSW+PE + PTL + L +K K+AVCG+VG+GKSSLL +IL
Sbjct: 620 YCSKDHTELSVEIENGAFSWEPESSRPTLDDIELKVKSGMKVAVCGAVGSGKSSLLSSIL 679
Query: 645 GEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINN 704
GEI K+ GTV + G AYV Q+ WI SG+IRDNIL+G + +Y++ +KACAL KD
Sbjct: 680 GEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNILFGSMYESEKYERTVKACALIKDFEL 739
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
F +GDLTEIG+RG+N+SGGQKQRIQ+ARAVY +ADIYL DDPFSAVDAHT LF +C+M
Sbjct: 740 FSNGDLTEIGERGINMSGGQKQRIQIARAVYQNADIYLLDDPFSAVDAHTGRELFEDCLM 799
Query: 765 AALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAIT 824
L+ KTV+ VTHQVEFL D ILV++ G++ Q+G ++ELL FE LV AH +A+
Sbjct: 800 GILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQAGKFEELLKQNIGFEVLVGAHNEALD 859
Query: 825 GLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDV 884
+ ++ + + E K TA E + E + + K +L +DEE E G +
Sbjct: 860 SILSIEKSSRNFKEG-SKDDTASIAESLQTHCDSEHNISTENKKKEAKLVQDEETEKGVI 918
Query: 885 GWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAY-----AIQIPKITSGILIG 939
G + ++ YL KG L+ +LAQS F LQ A+ YW+A+ A IPK+ G ++
Sbjct: 919 GKEVYLAYLTTVKGGLLVPFIILAQSCFQMLQIASNYWMAWTAPPTAESIPKLGMGRILL 978
Query: 940 VYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLS 999
VYA ++ S++ V R+ A GL ++ FFS SIF+APM FFDSTP GRIL R S
Sbjct: 979 VYALLAAGSSLCVLARTILVAIGGLSTAETFFSRMLCSIFRAPMSFFDSTPTGRILNRAS 1038
Query: 1000 SDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATA 1059
+D S+LD ++ + + A S +++ I +M+ V WQV V+ I VA F QRYY TA
Sbjct: 1039 TDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAWQVCVIFIPVAVACVFYQRYYTPTA 1098
Query: 1060 RELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119
REL R++G +AP++++ AE+ G TIRAF+ DRF + L L+D + +FH ME
Sbjct: 1099 RELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWFHVASAME 1158
Query: 1120 WLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLAN 1179
WL R+ L + + + LV +P G + P + GL ++Y +L Q + C N
Sbjct: 1159 WLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVTYGLSLNVLQATVIWNICNAEN 1218
Query: 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCT 1239
+ISVERI Q+ IP E P +++ RP +WP G I R L++RY + P VLK ITC
Sbjct: 1219 KMISVERILQYSKIPSEAPLVIDGHRPLDNWPNVGSIVFRDLQVRYAEHFPAVLKNITCE 1278
Query: 1240 FSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQE 1299
F G ++GVVGRTGSGK+TLI ALFR+VEP+ G+I+ID VDI +GL DLR +L IIPQ+
Sbjct: 1279 FPGGKKIGVVGRTGSGKSTLIQALFRIVEPSQGTIVIDNVDITKIGLHDLRSRLGIIPQD 1338
Query: 1300 PTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSS 1345
P LF G++R NLDPL Y+D EIW+A++KCQL I + +LD++
Sbjct: 1339 PALFDGTIRLNLDPLAQYTDHEIWEAIDKCQLGDVIRAKDERLDAT 1384
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 935 bits (2416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/1163 (42%), Positives = 728/1163 (62%), Gaps = 23/1163 (1%)
Query: 198 TELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRE 257
T +AG+L LTFSW++PL+ +G K L LED+P L D KF +S
Sbjct: 244 TPYSRAGILSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLES---P 300
Query: 258 NNSNNNGNLVRKVITNVYLK---ENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENL 314
+ +G K+I +Y E + A A + T+A VGP L+ FV Y N +
Sbjct: 301 DGGERSGVTTFKLIKALYFTAQWEILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYN 360
Query: 315 QEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHST 374
EG +V K+VE +QRH FF ++ G+RMRSAL+ +Y+K L LS ++ ++
Sbjct: 361 HEGYVLVITFFAAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTS 420
Query: 375 GEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLN 434
GEI+N++ VDA R+G F ++ H W + LQ+ LA+ +L+ +GL ++ LV +I L+N
Sbjct: 421 GEIINFMTVDAERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLASIAALVATIIVMLIN 480
Query: 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLS 494
PF ++ ++ Q + M A+D R++STSEIL NM+I+KLQ WE KF S I R+ E WL
Sbjct: 481 FPFGRMQERFQEKLMEAKDSRMKSTSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLK 540
Query: 495 EAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPE 554
+ A + ++W +PT++S F C L G PL + I + LAT R + EP+ +P+
Sbjct: 541 KYVYNSAVISFVFWGAPTLVSVSTFGACILLG-IPLESGKILSALATFRILQEPIYNLPD 599
Query: 555 ALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLR 614
+S+++Q KVS DR+ ++L L D V R+ SD +V++ SWD + PTL+
Sbjct: 600 TISMIVQTKVSLDRLASYLCLDNLQPDIVERLPKGSSDVAVEVINSTLSWDVSSSNPTLK 659
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI 674
+N + K+AVCG+VG+GKSSLL ++LGE+PK+SG++ + G+ AYV+Q+ WIQSG I
Sbjct: 660 DINFKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGKI 719
Query: 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734
DNIL+GKPM++ RYDK ++AC+L KD+ GD T IG+RG+NLSGGQKQRIQ+ARA+
Sbjct: 720 EDNILFGKPMERERYDKVLEACSLSKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 779
Query: 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794
Y DADIYLFDDPFSAVDAHT + LF E ++ L K+VI VTHQVEFL D ILV++ G
Sbjct: 780 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDG 839
Query: 795 QITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLD------NAGQGGAEKVEKGRTARP 848
+I+Q+G Y ++L +GT F +L+ AH++A+ + +D + G + K A
Sbjct: 840 RISQAGKYNDILNSGTDFMELIGAHQEALAVVDSVDANSVSEKSALGQENVIVKDAIAVD 899
Query: 849 EEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLA 908
E+ + + E SV+ Q+ ++EE E G V + Y+ ++ G +L+ +L
Sbjct: 900 EKLESQDLKNDKLE---SVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALVPFILLG 956
Query: 909 QSGFVGLQAAATYWLAYA------IQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHL 962
Q F LQ + YW+A+A +Q P S ++I VY ++ S++ + R+
Sbjct: 957 QVLFQLLQIGSNYWMAWATPVSEDVQAPVKLSTLMI-VYVALAFGSSLCILLRATLLVTA 1015
Query: 963 GLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTE 1022
G K + F + IF++PM FFDSTP GRI++R S+D S +D ++P+ VA + +
Sbjct: 1016 GYKTATELFHKMHHCIFRSPMSFFDSTPSGRIMSRASTDQSAVDLELPYQFGSVAITVIQ 1075
Query: 1023 LLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQ 1082
L+ IIG+M+ V+W V +V I + A + QRYYIA AREL R+ G KAP++ + +ET
Sbjct: 1076 LIGIIGVMSQVSWLVFLVFIPVVAASIWYQRYYIAAARELSRLVGVCKAPLIQHFSETIS 1135
Query: 1083 GVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVL 1142
G TIR+F+ RF + ++L D + F+T G MEWL R++ L +LT + +FLV
Sbjct: 1136 GATTIRSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVS 1195
Query: 1143 IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202
IP G + P L GL+++Y +L Q +L C L N IISVERI Q+ +P EPP ++E
Sbjct: 1196 IPTGVIDPSLAGLAVTYGLSLNTLQAWLIWTLCNLENKIISVERILQYASVPSEPPLVIE 1255
Query: 1203 DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISA 1262
RP SWP +G +E+R L++RY P+ PLVL+GITCTF G R G+VGRTGSGK+TLI
Sbjct: 1256 SNRPEQSWPSRGEVEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQT 1315
Query: 1263 LFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEI 1322
LFR+VEP+ G I IDGV+I ++GL DLR++LSIIPQ+PT+F G++R+NLDPL Y+DD+I
Sbjct: 1316 LFRIVEPSAGEIRIDGVNILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQI 1375
Query: 1323 WKALEKCQLKTTISSLPNKLDSS 1345
W+AL+KCQL + KLDSS
Sbjct: 1376 WEALDKCQLGDEVRKKEQKLDSS 1398
|
Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 919 bits (2374), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/1295 (39%), Positives = 770/1295 (59%), Gaps = 36/1295 (2%)
Query: 72 CCAVVGIAYLGYCLWNLIAKNDSSMSWLVSTVRGLIWVSLAISLLVKRS----KWIRMLI 127
CC + + Y L + + + + +L + L W S+++ L + + + + L+
Sbjct: 67 CCVSLSVFYSVLSLLSCLHWHTNGWPFLDLLLAALTWGSISVYLFGRYTNSCEQKVLFLL 126
Query: 128 TLWWMSF---SLLVLALNIEILARTYTINVVYILPLPVNLLL-LFSAFRNFSHFTSPNRE 183
+WW+ F S L ++ + + ++V +++ V + LF R
Sbjct: 127 RVWWVFFFVVSCYHLVVDFVLYKKQEMVSVHFVISDLVGVCAGLFLCCSCLWKKGEGERI 186
Query: 184 DKSLSEPLL--AEKNQTE-----LGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVP 236
D L EPLL AE + E KAG+L +++FSW++PL++LG K + ++D+P L
Sbjct: 187 DL-LKEPLLSSAESSDNEEVTAPFSKAGILSRMSFSWMSPLITLGNEKIIDIKDVPQLDR 245
Query: 237 ED--EASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVV 294
D E+ F + WD R + L++ + +V+ ++ + A+ A + T++
Sbjct: 246 SDTTESLFWIFRSKLEWDDGERRITTFK---LIKALFLSVW-RDIVLSALLAFVYTVSCY 301
Query: 295 VGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354
V P L+ FV Y N + +G +V + K+VE TQR FF +++G+ MRS L+
Sbjct: 302 VAPYLMDNFVQYLNGNRQYKNQGYVLVTTFFVAKLVECQTQRQWFFRGQKAGLGMRSVLV 361
Query: 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFG 414
+Y+K L L ++ H++GEI+N +AVDA R+ F ++ H W L LQ+ LA+ +L+
Sbjct: 362 SMIYEKGLTLPCHSKQGHTSGEIINLMAVDADRISAFSWFMHDPWILVLQVSLALWILYK 421
Query: 415 VVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSW 474
+GLG++ ++ L N PFAK+ +K QS M ++D R++ TSE+L NMKI+KLQ W
Sbjct: 422 SLGLGSIAAFPATILVMLANYPFAKLEEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGW 481
Query: 475 EEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNAST 534
E KF S I R E WL + + + W +P+ IS+ F C L PL +
Sbjct: 482 EMKFLSKILELRHIEAGWLKKFVYNSSAINSVLWAAPSFISATAFGACLLL-KIPLESGK 540
Query: 535 IFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594
I LAT R + P+ +PE +S+++Q KVS +RI +FL +L D V R+ S+ +
Sbjct: 541 ILAALATFRILQGPIYKLPETISMIVQTKVSLNRIASFLCLDDLQQDVVGRLPSGSSEMA 600
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
V+I G FSWD IPTLR +N + +A+CG+VG+GKSSLL +ILGE+PKISG +
Sbjct: 601 VEISNGTFSWDDSSPIPTLRDMNFKVSQGMNVAICGTVGSGKSSLLSSILGEVPKISGNL 660
Query: 655 NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714
+ G AY++Q+ WIQSG + +NIL+GKPM++ YD+ ++AC+L+KD+ D T IG
Sbjct: 661 KVCGRKAYIAQSPWIQSGKVEENILFGKPMEREWYDRVLEACSLNKDLEILPFHDQTVIG 720
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL 774
+RG+NLSGGQKQRIQ+ARA+Y DADIYLFDDPFSAVDAHT + LF E ++ L KTVI
Sbjct: 721 ERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTVIY 780
Query: 775 VTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQ 834
VTHQVEFL E D ILV++ G+ITQ+G Y E+L +GT F +LV AH +A L +D+
Sbjct: 781 VTHQVEFLPEADLILVMKDGKITQAGKYHEILDSGTDFMELVGAHTEA---LATIDSCET 837
Query: 835 GGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLN 894
G A EK T ++ N + KE E K QL ++EE E G VG+ + Y+
Sbjct: 838 GYAS--EKSTT---DKENEVLHHKEKQENGSDNKPSGQLVQEEEREKGKVGFTVYKKYMA 892
Query: 895 VSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI-----PKITSGILIGVYAGVSTASA 949
++ G +++ L ++ Q F L + YW+ + + P ++ LI VY ++ AS+
Sbjct: 893 LAYGGAVIPLILVVQVLFQLLSIGSNYWMTWVTPVSKDVEPPVSGFTLILVYVLLAVASS 952
Query: 950 VFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDI 1009
+ R+ A G K + F+ IF+A M FFD+TP+GRIL R S+D S+ D +
Sbjct: 953 FCILIRALLVAMTGFKMATELFTQMHLRIFRASMSFFDATPMGRILNRASTDQSVADLRL 1012
Query: 1010 PFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTT 1069
P +VA + +L IIG++ V WQVL+V I + A + ++YYI+ AREL R+ G +
Sbjct: 1013 PGQFAYVAIAAINILGIIGVIVQVAWQVLIVFIPVVAACAWYRQYYISAARELARLAGIS 1072
Query: 1070 KAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQ 1129
++PV+++ +ET G+ TIR+F+ RF + ++L D + L FH+ G MEWL R+E L
Sbjct: 1073 RSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKFHSTGAMEWLCFRLELLS 1132
Query: 1130 NLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189
++ + LV P G + P L GL+++YA L Q L C L N +ISVER+ Q
Sbjct: 1133 TFAFASSLVILVSAPEGVINPSLAGLAITYALNLNTLQATLIWTLCDLENKMISVERMLQ 1192
Query: 1190 FMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVV 1249
+ +IP EPP ++E RP SWP +G I + L++RY P+ P+VL G+TCTF G + G+V
Sbjct: 1193 YTNIPSEPPLVIETTRPEKSWPSRGEITICNLQVRYGPHLPMVLHGLTCTFPGGLKTGIV 1252
Query: 1250 GRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRT 1309
GRTG GK+TLI LFR+VEPA G I IDG++I S+GL DLR +LSIIPQ+PT+F G++R+
Sbjct: 1253 GRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILSIGLHDLRSRLSIIPQDPTMFEGTIRS 1312
Query: 1310 NLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS 1344
NLDPL Y+DD+IW+AL+ CQL + KLDS
Sbjct: 1313 NLDPLEEYTDDQIWEALDNCQLGDEVRKKELKLDS 1347
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 879 bits (2272), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/1161 (40%), Positives = 703/1161 (60%), Gaps = 23/1161 (1%)
Query: 193 AEKNQ--TELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKF--A 248
AE ++ T AG L ++FSW++PL+ LG K + ED+P + D A + F
Sbjct: 223 AEDDEVVTPFSNAGFLSHVSFSWMSPLIVLGNEKIIDSEDVPQVDNSDRAEKLFWIFRSK 282
Query: 249 YAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN 308
WD R + L++ + +V+ ++ + + A + T++ V P L+ FV Y N
Sbjct: 283 LEWDDGERRITTYK---LIKALFFSVW-RDILLSTLFAFVYTVSCYVAPYLMDTFVQYLN 338
Query: 309 RGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLG 368
+ +G+ +V + K+VE +R+ +F +++G+ MRS L+ +Y+K L L
Sbjct: 339 GQRQYSNQGVVLVTTFFVAKLVECQARRNWYFRLQKAGIGMRSVLVSMIYEKGLTLPCYS 398
Query: 369 RKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428
++ H++GEI+N + VDA R+ F ++ H W L LQ+ LA+ +L+ +GLG++
Sbjct: 399 KQGHTSGEIINLMTVDAERISAFSWYMHDPWILVLQISLALLILYRSLGLGSIAAFAATF 458
Query: 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREK 488
+ L N+P AK+ +K Q M ++D R++ TSE L NM+I+KLQ WE KF I R
Sbjct: 459 LVMLGNIPLAKLEEKFQGNLMESKDNRMKKTSEALLNMRILKLQGWEMKFLHKILDLRGI 518
Query: 489 EFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEP 548
E WL + A + + W +P+ +S+ F C L PL + I LAT R + P
Sbjct: 519 EAGWLKKFVYNSAAISSVLWAAPSFVSATAFGACMLL-KIPLESGKIIAALATFRILQTP 577
Query: 549 VRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPEL 608
+ +P+ +S+++Q KVS DRI FL +L D + R+ S V++ G FSWD
Sbjct: 578 IYKLPDTISMIVQTKVSLDRIATFLCLDDLQQDGMERLPSGSSKMDVEVSNGAFSWDDSS 637
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668
IPTL+ + I IA+CG+VG+GKSSLL +ILGE+PKISG + + G AY++Q+ W
Sbjct: 638 PIPTLKDIRFKIPHGMNIAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPW 697
Query: 669 IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728
IQSG + +NIL+GKPM + Y + ++AC+L+KD+ F D T IG+RG+NLSGGQKQRI
Sbjct: 698 IQSGKVEENILFGKPMQREWYQRVLEACSLNKDLEVFPFRDQTVIGERGINLSGGQKQRI 757
Query: 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRI 788
Q+ARA+Y DADIYLFDDPFSAVDAHT + LF E ++ L KTVI VTHQ+EFL E D I
Sbjct: 758 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRNKTVIYVTHQLEFLPEADLI 817
Query: 789 LVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARP 848
LV++ G+ITQ+G Y E+L +GT F +LV AH DA L +D+ +G A ++
Sbjct: 818 LVMKDGRITQAGKYNEILESGTDFMELVGAHTDA---LAAVDSYEKGSA----SAQSTTS 870
Query: 849 EEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLA 908
+E ++ E S KG QL ++EE E G VG+ + Y+ ++ G +L+ + ++
Sbjct: 871 KESKVSNDEEKQEEDLPSPKG--QLVQEEEREKGKVGFTVYQKYMKLAYGGALVPIILVV 928
Query: 909 QSGFVGLQAAATYWLAYAIQI-----PKITSGILIGVYAGVSTASAVFVYFRSFFAAHLG 963
Q F L + YW+A+ + P ++ LI VY ++TAS+ + R+ +A G
Sbjct: 929 QILFQVLNIGSNYWMAWVTPVSKDVKPLVSGSTLILVYVFLATASSFCILVRAMLSAMTG 988
Query: 964 LKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023
K + F+ IF+A M FFD+TP+GRIL R S+D S +D +P +A + +
Sbjct: 989 FKIATELFNQMHFRIFRASMSFFDATPIGRILNRASTDQSAVDLRLPSQFSNLAIAAVNI 1048
Query: 1024 LAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQG 1083
L IIG+M V WQVL+V I + A + ++YYI+ AREL R++G +++P++ + +ET G
Sbjct: 1049 LGIIGVMGQVAWQVLIVFIPVIAACTWYRQYYISAARELARLSGISRSPLVQHFSETLSG 1108
Query: 1084 VVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLI 1143
+ TIR+F+ RF + ++L D + L FH MEWL R++ L + + + LV +
Sbjct: 1109 ITTIRSFDQEPRFRTDIMRLNDCYSRLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSV 1168
Query: 1144 PRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVED 1203
P G + P GL+++YA L Q L C L N +ISVER+ Q++ IP EP ++E
Sbjct: 1169 PEGVINPSFAGLAVTYALNLNSLQATLIWTLCDLENKMISVERMLQYIDIPSEPSLVIES 1228
Query: 1204 KRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISAL 1263
RP SWP +G I + L++RY P+ P+VL+G+TCTF G + G+VGRTG GK+TLI L
Sbjct: 1229 TRPEKSWPCRGEITICNLQVRYGPHLPMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTL 1288
Query: 1264 FRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIW 1323
FR+VEPA G I IDG++I ++GL DLR +LSIIPQEPT+F G+VR+NLDPL Y+DD+IW
Sbjct: 1289 FRIVEPAAGEIRIDGINILTIGLHDLRSRLSIIPQEPTMFEGTVRSNLDPLEEYADDQIW 1348
Query: 1324 KALEKCQLKTTISSLPNKLDS 1344
+AL+KCQL I KLDS
Sbjct: 1349 EALDKCQLGDEIRKKELKLDS 1369
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/1343 (37%), Positives = 764/1343 (56%), Gaps = 83/1343 (6%)
Query: 65 VSIVVSACCAVVGIAYLGYCLWNLIAKNDSSMSWLVSTVRGLIWVSLAISL--------- 115
V+IV+S C V+ ++ L K ++ WL+ V ++ L + L
Sbjct: 103 VTIVLSFCSLVLCVSAFFTTRTKL--KLVDTLFWLIHAVTNVVIAVLVLHLKRFASPSHP 160
Query: 116 LVKRSKWI-RMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFR-- 172
L R W+ ++T + +L L + A +V + P+ +LL + +
Sbjct: 161 LTLRIYWVFNFVVTTLFTVSGILHLLSDDPAAASLRADDVASFISFPLTAVLLLVSIKGS 220
Query: 173 -----NFSHFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLA 227
S+ T+P + + + E +N + A + K + W+NPLL GY PL
Sbjct: 221 TGVVVTTSNVTAPAKSNDVVVE---KSENVSLYASASFISKTFWLWMNPLLRKGYKSPLN 277
Query: 228 LEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICAL 287
L+ +P+L PE A F W N+ N VR + + KE F A+ A+
Sbjct: 278 LDQVPTLSPEHRAEKLATLFESKW-----PKPQENSRNPVRTTLIRCFWKEIAFTAVLAI 332
Query: 288 LRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347
+R + VGP+L+ +FV++++ + +G +V L+I K VE + F S++ GM
Sbjct: 333 IRLSVIYVGPVLIQSFVDFTSGKRSSPSQGYYLVLILLIAKFVEVLSTHQFNFNSQKLGM 392
Query: 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFL 407
+RS L+ A+Y+K LKL+ R+ H G+IVNY+AVDA ++ + H W + LQ+
Sbjct: 393 LIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVAA 452
Query: 408 AIGVLFGVVGLG------ALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSE 461
AI +L+ +G L G+ +F++ G K + Q M+ +D R+++T+E
Sbjct: 453 AIVLLYNTLGPSVVTTVIGLTGIFVFILLG------TKRNNRYQFSLMMNRDSRMKATNE 506
Query: 462 ILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLG 521
+LN M++IK Q+WE+ F I RE EF WLS+ A ++ W +P +IS++ F
Sbjct: 507 MLNYMRVIKFQAWEDHFNERILKFREMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFTT 566
Query: 522 CALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581
G L+A T+FT + + EP+R P+++ + Q +S R++A+++ EL+ +
Sbjct: 567 AVFLG-VKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDAYMMSRELSEE 625
Query: 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLY 641
V R + +V+I++G+FSWD E P + +N ++K + A+ G+VG+GKSSLL
Sbjct: 626 TVERSQGCDGNVAVEIKDGSFSWDDEDDEPAIENINFEVKKGELAAIVGTVGSGKSSLLA 685
Query: 642 AILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
++LGE+ K+SG V + G+ AYV+QTSWIQ+G+++DNIL+G PM++++Y++ +K C L+KD
Sbjct: 686 SVLGEMHKLSGKVRVCGTTAYVAQTSWIQNGTVQDNILFGLPMNRSKYNEVLKVCCLEKD 745
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ + GD TEIG+RG+NLSGGQKQRIQLARAVY ++D+YL DD FSAVDAHT + +F +
Sbjct: 746 MQIMEFGDQTEIGERGINLSGGQKQRIQLARAVYQESDVYLLDDVFSAVDAHTGSDIFKK 805
Query: 762 CVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRD 821
CV AL+ KT++LVTHQV+FL VDRILV+ G I QSG Y EL+ +G F +LV AH
Sbjct: 806 CVRGALKGKTILLVTHQVDFLHNVDRILVMRDGMIVQSGKYDELVSSGLDFGELVAAHET 865
Query: 822 AITGLGP----------------------LDNAGQGGAEKVEKGRTARPEEPNGIY---- 855
++ + +++ Q + KV RT E P +
Sbjct: 866 SMELVEAGSASATAANVPMASPITQRSISIESPRQPKSPKVH--RTTSMESPRVLRTTSM 923
Query: 856 --PRKESSEGEISVKGL---------TQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCL 904
PR E S+K ++L ++EE E+G V ++ + Y + G + L
Sbjct: 924 ESPRLSELNDE-SIKSFLGSNIPEDGSRLIKEEEREVGQVSFQVYKLYSTEAYGWWGMIL 982
Query: 905 GVLAQSGFVGLQAAATYWLAYAIQIPKITS---GILIGVYAGVSTASAVFVYFRSFFAAH 961
V + A+ YWLAY S + I VY ++ S V V R+F+ H
Sbjct: 983 VVFFSVAWQASLMASDYWLAYETSAKNEVSFDATVFIRVYVIIAAVSIVLVCLRAFYVTH 1042
Query: 962 LGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGT 1021
LGLK ++ FF NS+ APM FFD+TP GRIL+R S+D + +D IPF I VA T
Sbjct: 1043 LGLKTAQIFFKQILNSLVHAPMSFFDTTPSGRILSRASTDQTNVDIFIPFMIGLVATMYT 1102
Query: 1022 ELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETS 1081
LL+I + W + I + + YY+A++REL R++ TKAPV+++ +E+
Sbjct: 1103 TLLSIFIVTCQYAWPTVFFIIPLGWLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESI 1162
Query: 1082 QGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV 1141
GV+TIRAF F Q +K V+ + + FH NG EWL R+E + + L +ALF+V
Sbjct: 1163 AGVMTIRAFKKQPMFRQENVKRVNANLRMDFHNNGSNEWLGFRLELIGSWVLCISALFMV 1222
Query: 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIV 1201
++P + P VGLSLSY +L G + C++ N ++SVERIKQF IP E +
Sbjct: 1223 MLPSNIIKPENVGLSLSYGLSLNGVLFWAIYLSCFIENKMVSVERIKQFTDIPAEAKWEI 1282
Query: 1202 EDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLIS 1261
++ RPP +WP+KG I L +K+RYRPN PLVLKG+T G ++GVVGRTGSGK+TLI
Sbjct: 1283 KESRPPPNWPYKGNIRLEDVKVRYRPNTPLVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQ 1342
Query: 1262 ALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDE 1321
LFRLVEP+GG I+IDG+DIC++GL DLR + IIPQEP LF G+VR+N+DP YSD+E
Sbjct: 1343 VLFRLVEPSGGKIIIDGIDICTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEKYSDEE 1402
Query: 1322 IWKALEKCQLKTTISSLPNKLDS 1344
IWK+LE+CQLK ++S P KLDS
Sbjct: 1403 IWKSLERCQLKDVVASKPEKLDS 1425
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/1326 (38%), Positives = 756/1326 (57%), Gaps = 72/1326 (5%)
Query: 64 CVSIVVSACCAVVGI-AYLGYCL----WNLIAKNDSSMSWLVSTVRGLIWVSLAISLLVK 118
V++++S C V+ + A+ G WNLI + WL+ V L+ I++LV
Sbjct: 104 AVTVLLSFCSVVLCVLAFTGKRRTQRPWNLI----DPLFWLIHAVTHLV-----IAVLVL 154
Query: 119 RSKWIRML-----ITLWWMS----FSLLVLALNIEILARTYTI----NVVYILPLPVNLL 165
K L + ++W+S SL + L+ T +V P+
Sbjct: 155 HQKRFAALNHPLSLRIYWISSFVLTSLFAVTGIFHFLSDAATSLRAEDVASFFSFPLTAF 214
Query: 166 LLFSAFRNFSHF-TSPNREDKSLSEPLLAEK--NQTELGKAGLLRKLTFSWINPLLSLGY 222
LL ++ R + T+ S+ + EK N + A + K + W+NPLLS GY
Sbjct: 215 LLIASVRGITGLVTAETNSPTKPSDAVSVEKSDNVSLYASASVFSKTFWLWMNPLLSKGY 274
Query: 223 SKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFI 282
PL LE +P+L PE +A F +W S N+ + +R + + KE +F
Sbjct: 275 KSPLTLEQVPTLSPEHKAERLALLFESSW-----PKPSENSSHPIRTTLLRCFWKEILFT 329
Query: 283 AICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGS 342
AI A++R + VGP+L+ +FV++++ + +G +V L++ K VE T F S
Sbjct: 330 AILAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQGYYLVLILLVAKFVEVLTTHQFNFDS 389
Query: 343 RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLA 402
++ GM +RS L+ A+Y+K LKL+ R+ H G+IVNY+AVDA ++ + H W +
Sbjct: 390 QKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMP 449
Query: 403 LQLFLAIGVLFGVVGLG------ALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERL 456
LQ+ +A+ +L+G +G L G+ +F++ G + Q M +D R+
Sbjct: 450 LQVTVALVLLYGSLGASVITAVIGLTGVFVFILLG------TQRNNGYQFSLMGNRDSRM 503
Query: 457 RSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISS 516
++T+E+LN M++IK Q+WE F I R+ EF WLS+ A ++ W +P +IS+
Sbjct: 504 KATNEMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKFLYSIAGNIIVLWSTPVLISA 563
Query: 517 VIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH 576
+ F AL L+A T+FT + + EP+R P+++ + Q +S R++++++
Sbjct: 564 LTF-ATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDSYMMSK 622
Query: 577 ELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGK 636
EL+ D V R + +V++++G+FSWD E P L +N +K + A+ G+VG+GK
Sbjct: 623 ELSEDAVERALGCDGNTAVEVRDGSFSWDDEDNEPALSDINFKVKKGELTAIVGTVGSGK 682
Query: 637 SSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKAC 696
SSLL ++LGE+ +ISG V + GS YV+QTSWI++G+++DNIL+G PM + +Y+K + C
Sbjct: 683 SSLLASVLGEMHRISGQVRVCGSTGYVAQTSWIENGTVQDNILFGLPMVREKYNKVLNVC 742
Query: 697 ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA 756
+L+KD+ + GD TEIG+RG+NLSGGQKQRIQLARAVY + D+YL DD FSAVDAHT +
Sbjct: 743 SLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLARAVYQECDVYLLDDVFSAVDAHTGS 802
Query: 757 TLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
+F +CV AL+ KTV+LVTHQV+FL VD ILV+ G+I +SG Y EL+ +G F +LV
Sbjct: 803 DIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIVESGKYDELVSSGLDFGELV 862
Query: 817 NAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEIS---------- 866
AH ++ L AG A RT P P+ PR +S
Sbjct: 863 AAHETSME----LVEAGADSAAVATSPRT--PTSPHASSPRTSMESPHLSDLNDEHIKSF 916
Query: 867 -----VKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATY 921
V+ ++L ++EE E G V + Y + G + L + + G A+ Y
Sbjct: 917 LGSHIVEDGSKLIKEEERETGQVSLGVYKQYCTEAYGWWGIVLVLFFSLTWQGSLMASDY 976
Query: 922 WLAYAIQIPKITS---GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSI 978
WLAY S + I Y ++ S V V RS++ HLGLK ++ FF NSI
Sbjct: 977 WLAYETSAKNAISFDASVFILGYVIIALVSIVLVSIRSYYVTHLGLKTAQIFFRQILNSI 1036
Query: 979 FKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVL 1038
APM FFD+TP GRIL+R S+D + +D IPF + V + T LL+I + W
Sbjct: 1037 LHAPMSFFDTTPSGRILSRASTDQTNVDILIPFMLGLVVSMYTTLLSIFIVTCQYAWPTA 1096
Query: 1039 VVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQ 1098
I + + YY+A++REL R++ TKAP++++ +E+ GV+TIR+F + F Q
Sbjct: 1097 FFVIPLGWLNIWYRNYYLASSRELTRMDSITKAPIIHHFSESIAGVMTIRSFRKQELFRQ 1156
Query: 1099 NYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLS 1158
+K V+ + + FH NG EWL R+E + + L +ALF+VL+P + P VGLSLS
Sbjct: 1157 ENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCISALFMVLLPSNVIRPENVGLSLS 1216
Query: 1159 YAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIEL 1218
Y +L F C++ N ++SVERIKQF IP E ++ PPS+WPF G + L
Sbjct: 1217 YGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPSESEWERKETLPPSNWPFHGNVHL 1276
Query: 1219 RQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278
LK+RYRPN PLVLKGIT G +VGVVGRTGSGK+TLI LFRLVEP+GG I+IDG
Sbjct: 1277 EDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDG 1336
Query: 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSL 1338
+DI ++GL DLR + IIPQEP LF G+VR+N+DP YSD+EIWK+LE+CQLK +++
Sbjct: 1337 IDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIWKSLERCQLKDVVATK 1396
Query: 1339 PNKLDS 1344
P KLDS
Sbjct: 1397 PEKLDS 1402
|
Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/973 (43%), Positives = 598/973 (61%), Gaps = 50/973 (5%)
Query: 381 IAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKI 440
++VD R+ +F ++ + W L +Q+F AI +L +GLGAL LV L+ N P ++
Sbjct: 1 MSVDVQRITDFIWYVNSIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVMACNYPLTRL 60
Query: 441 LQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK 500
+ QS+ M A+D+R+++TSEIL NMKI+KLQ+W+ +F + +++ R+KE+ L ++ +
Sbjct: 61 QRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQ 120
Query: 501 AYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMI 560
+ T I W +P++IS V F+ C L G L A + + LAT + + P+ +P+ LS ++
Sbjct: 121 DFTTFILWGAPSLISVVTFVTCMLMG-VKLTAGAVLSALATFQMLQSPIFGLPDLLSALV 179
Query: 561 QVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620
Q KVS DRI ++L E D V S ++ SV+I+ G FSW+PE + PTL + L +
Sbjct: 180 QSKVSADRIASYLQQSETQKDAVEYCSNDHTEFSVEIENGAFSWEPESSRPTLDDIELKV 239
Query: 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILY 680
K K+A+CG+VG+GKSSL +ILGEI K+ GTV + G AYV Q+ WI SG+IRDNIL+
Sbjct: 240 KSGMKVAICGAVGSGKSSLPSSILGEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNILF 299
Query: 681 GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740
G + +Y++ +KACAL KD F +GDLTEIG+RG+N+SGGQKQRIQ+ARAVY +ADI
Sbjct: 300 GSIYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVYQNADI 359
Query: 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
YL DDPFSAVDAHT LF +C+M L+ KTV+ VTHQVEFL D ILV++ G++ Q+G
Sbjct: 360 YLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQAG 419
Query: 801 NYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKES 860
++ELL FE L
Sbjct: 420 KFEELLKQNIGFEVLTQC-----------------------------------------D 438
Query: 861 SEGEISV---KGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQA 917
SE IS K +L +DEE E G +G + ++ YL KG L+ +LAQS F LQ
Sbjct: 439 SEHNISTENKKKEAKLVQDEETEKGVIGKEVYLTYLTTVKGGLLVPFIILAQSCFQMLQI 498
Query: 918 AATYWLAY-----AIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFS 972
A+ YW+A+ A IPK+ G ++ VYA ++ S++ V R+ A GL ++ FFS
Sbjct: 499 ASNYWMAWTAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFFS 558
Query: 973 GFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTF 1032
SIF+APM +FDSTP GRIL R S+D S+LD ++ + + A S +++ I +M+
Sbjct: 559 RMLCSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQ 618
Query: 1033 VTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNM 1092
V WQV V+ I VA F QRYY T REL R++G +AP++++ AE+ G TIRAF+
Sbjct: 619 VAWQVCVIFIPVAVACVFYQRYYTPTERELSRMSGVERAPILHHFAESLAGATTIRAFDQ 678
Query: 1093 VDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGL 1152
DRF + L L+D + +FH MEWL R+ L + + + LV +P G + P +
Sbjct: 679 RDRFISSNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSI 738
Query: 1153 VGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPF 1212
GL ++Y +L Q + C N +ISVERI Q IP E P +++D+RP +WP
Sbjct: 739 AGLGVTYGLSLNVLQATVIWNICNAENKMISVERILQHSKIPSEAPLVIDDQRPLDNWPN 798
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
G I R L++RY + P VLK ITC F G ++GVVGRTGSGK+TLI ALFR+VEP+ G
Sbjct: 799 VGSIVFRDLQVRYAEHFPAVLKNITCAFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSHG 858
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLK 1332
+I+ID VDI +GL DLR +L IIPQ+ LF G++R NLDPL Y+D EIW+AL+KCQL
Sbjct: 859 TIVIDNVDITKIGLHDLRSRLGIIPQDNALFDGTIRLNLDPLAQYTDREIWEALDKCQLG 918
Query: 1333 TTISSLPNKLDSS 1345
I + KLD++
Sbjct: 919 DVIRAKDEKLDAT 931
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1354 | ||||||
| 255572985 | 1475 | multidrug resistance-associated protein | 0.984 | 0.903 | 0.731 | 0.0 | |
| 359482526 | 1469 | PREDICTED: ABC transporter C family memb | 0.989 | 0.912 | 0.721 | 0.0 | |
| 359482528 | 1465 | PREDICTED: ABC transporter C family memb | 0.983 | 0.909 | 0.704 | 0.0 | |
| 359482524 | 1462 | PREDICTED: ABC transporter C family memb | 0.990 | 0.917 | 0.710 | 0.0 | |
| 358349246 | 1549 | Multidrug resistance protein ABC transpo | 0.980 | 0.857 | 0.681 | 0.0 | |
| 356528857 | 1469 | PREDICTED: ABC transporter C family memb | 0.982 | 0.905 | 0.683 | 0.0 | |
| 356522202 | 1951 | PREDICTED: ABC transporter C family memb | 0.975 | 0.677 | 0.672 | 0.0 | |
| 357515353 | 1463 | ABC transporter C family member [Medicag | 0.983 | 0.910 | 0.666 | 0.0 | |
| 356526035 | 1465 | PREDICTED: ABC transporter C family memb | 0.983 | 0.908 | 0.675 | 0.0 | |
| 356528827 | 1494 | PREDICTED: ABC transporter C family memb | 0.978 | 0.886 | 0.654 | 0.0 |
| >gi|255572985|ref|XP_002527423.1| multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative [Ricinus communis] gi|223533233|gb|EEF34989.1| multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2008 bits (5203), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 983/1343 (73%), Positives = 1128/1343 (83%), Gaps = 10/1343 (0%)
Query: 9 GGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRRECVSIV 68
G LSW CE + DLGS C Q IID+INLVF VFYL LL+GS RK+ G RR+ +S+V
Sbjct: 16 GELSWICEEKLDLGSPCTQRIIIDIINLVFLGVFYLFLLLGSIRKHQVSGSNRRDWISVV 75
Query: 69 VSACCAVVGIAYLGYCLWNLIAKNDS--SMSWLVSTVRGLIWVSLAISLLVKRSKWIRML 126
VS CC ++ IAYLG LW+LIAKN S +SWLV VRG+IW+S+A+SLLV RS+W R+L
Sbjct: 76 VSICCTLISIAYLGVGLWDLIAKNHSFNHLSWLVYLVRGIIWISVAVSLLVTRSRWNRIL 135
Query: 127 ITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPNREDKS 186
+T+WW+SFSLL ALNIEILAR +I V+ ILP PVN LLL A RNFSHF+S K+
Sbjct: 136 VTVWWVSFSLLASALNIEILARANSIQVLDILPWPVNFLLLLCALRNFSHFSSQQASYKN 195
Query: 187 LSEPLLAEK--NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAY 244
L EPLL K +L A L LTFSWINPLL LGYSKPL EDIPSL+PEDEA AY
Sbjct: 196 LFEPLLGAKEVKNQKLAHASFLSNLTFSWINPLLKLGYSKPLDDEDIPSLLPEDEADIAY 255
Query: 245 QKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFV 304
QKFA+AWDSL+RENNSN+ GNLV + + V+LKENIFI ALLR IAV V PLLLYAFV
Sbjct: 256 QKFAHAWDSLIRENNSNDTGNLVLEAVAKVHLKENIFIGTYALLRAIAVAVLPLLLYAFV 315
Query: 305 NYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKL 364
NYSN ++NL +GLSIVGCLI+ KVVES +QR FF +R+SGMR+RSALMVAVYQKQL L
Sbjct: 316 NYSNLDQQNLYQGLSIVGCLILVKVVESLSQRRSFFLARQSGMRIRSALMVAVYQKQLNL 375
Query: 365 SSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGL 424
SSL R++HSTGE VNYIAVDAYRMGEFP+WFH TW+ LQLFL+I +LFGVVGLGA+ GL
Sbjct: 376 SSLARRRHSTGEFVNYIAVDAYRMGEFPWWFHATWAYVLQLFLSIIILFGVVGLGAVTGL 435
Query: 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES 484
V LICGLLNVPFA+ LQKCQS+FMIAQDERLR+TSEILNNMKIIKLQSWEEKFKS IES
Sbjct: 436 VPLLICGLLNVPFARFLQKCQSKFMIAQDERLRATSEILNNMKIIKLQSWEEKFKSYIES 495
Query: 485 RREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRS 544
R+ EFKWL+E+Q++K YGT++YW+SPTIISSV+F+GCAL SAPLN+STIFTVLATLRS
Sbjct: 496 LRDTEFKWLTESQIKKTYGTILYWLSPTIISSVVFVGCALFRSAPLNSSTIFTVLATLRS 555
Query: 545 MGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSW 604
M EPVRMIPEALSI+IQVKVSFDRIN FLLD EL N+ + S S S+ ++ G FSW
Sbjct: 556 MAEPVRMIPEALSILIQVKVSFDRINNFLLDDELKNESISTNSSYNSGESITVEGGKFSW 615
Query: 605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVS 664
DPEL++PTLR VNLDIK QK AVCG VGAGKSSLLYA+LGEIPKISGTVN++GSIAYVS
Sbjct: 616 DPELSMPTLREVNLDIKRGQKFAVCGPVGAGKSSLLYAMLGEIPKISGTVNVFGSIAYVS 675
Query: 665 QTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724
QTSWIQSG++RDNILYGKPMD+ +Y++AIKACALDKDIN+F+HGDLTEIGQRGLN+SGGQ
Sbjct: 676 QTSWIQSGTVRDNILYGKPMDQEKYERAIKACALDKDINSFNHGDLTEIGQRGLNMSGGQ 735
Query: 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784
KQRIQLARAVYNDADIYL DDPFSAVDAHTAA LFN+C+M ALE KTVILVTHQV+FLS
Sbjct: 736 KQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCIMTALENKTVILVTHQVDFLSS 795
Query: 785 VDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGR 844
VD+ILV+EGGQITQSG+Y+ELL+A TAFEQLVNAH+D++T LG D + +G + K +
Sbjct: 796 VDQILVMEGGQITQSGSYEELLMACTAFEQLVNAHKDSVTVLGSYDKS-RGESLKAD--- 851
Query: 845 TARPEEPNGIYPRKESSEGEISVKGLT--QLTEDEEMEIGDVGWKPFMDYLNVSKGMSLL 902
R E+ + K++SEGEIS+KG+ QLTE+EE IG+VGWKPF+DY+ +SKG
Sbjct: 852 IVRQEDFSVSSHAKQNSEGEISMKGVAGVQLTEEEEKGIGNVGWKPFLDYILISKGTLFA 911
Query: 903 CLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHL 962
L L+ GF+GLQAAATYWLAYA+QIP+I S +LIGVY +S+ SA FVY RS+ A L
Sbjct: 912 SLSTLSICGFIGLQAAATYWLAYAVQIPEIRSSMLIGVYTLISSLSASFVYLRSYLAVLL 971
Query: 963 GLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTE 1022
GLKASK+FFSGFTN+IFKAPMLFFDSTPVGRILTR SSDLSILDFDIPFS VF A E
Sbjct: 972 GLKASKSFFSGFTNTIFKAPMLFFDSTPVGRILTRASSDLSILDFDIPFSYVFAAGGLVE 1031
Query: 1023 LLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQ 1082
L+ IGIM VTWQVLV+A+ A+V +++Q YY+A+ARELIRINGTTKAPVMNY AETS
Sbjct: 1032 LVVTIGIMASVTWQVLVIAVLAIVGAKYIQDYYLASARELIRINGTTKAPVMNYAAETSL 1091
Query: 1083 GVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVL 1142
GVVTIRAF MV+RFFQNYLKLVD DA LFF +NG MEWLI+R EALQN+TLFTAAL LVL
Sbjct: 1092 GVVTIRAFKMVNRFFQNYLKLVDKDAVLFFLSNGAMEWLIIRTEALQNVTLFTAALLLVL 1151
Query: 1143 IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202
+P+G V PGL+GLSLSYA +LTGTQVF++RWYC LANY+ISVERIKQFMHIP EPPA+VE
Sbjct: 1152 LPKGVVTPGLIGLSLSYALSLTGTQVFVTRWYCNLANYVISVERIKQFMHIPSEPPAVVE 1211
Query: 1203 DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISA 1262
D RPPSSWP +GRIEL+ LKIRYRPNAPLVLKGI C F EGTRVGVVGRTGSGKTTLISA
Sbjct: 1212 DNRPPSSWPPEGRIELQDLKIRYRPNAPLVLKGINCIFEEGTRVGVVGRTGSGKTTLISA 1271
Query: 1263 LFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEI 1322
LFRLVEPA G ILIDG+DICS+GL+DLR KLSIIPQE TLFRGSVRTNLDPLGLYSD EI
Sbjct: 1272 LFRLVEPASGRILIDGLDICSIGLRDLRTKLSIIPQEATLFRGSVRTNLDPLGLYSDPEI 1331
Query: 1323 WKALEKCQLKTTISSLPNKLDSS 1345
W+ALEKCQLKTTISSLPN+LDSS
Sbjct: 1332 WEALEKCQLKTTISSLPNQLDSS 1354
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482526|ref|XP_002276212.2| PREDICTED: ABC transporter C family member 8-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1960 bits (5078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 976/1352 (72%), Positives = 1116/1352 (82%), Gaps = 12/1352 (0%)
Query: 1 MAFLGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRI 60
MAFL GLSW C E D+GSFCIQ +I+DV+NL+F VF + L++GS RK+
Sbjct: 1 MAFLKNSFSGLSWMCGEELDMGSFCIQRSILDVLNLLFLSVFCVLLVIGSIRKHEISRCS 60
Query: 61 RRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSSM--SWLVSTVRGLIWVSLAISLLVK 118
RR+ VS VS CCA++ I YL W+L AKN+ SW V VRGLIW+SL +SLLV+
Sbjct: 61 RRDWVSRGVSICCALISIGYLSAGFWDLYAKNEGPRLSSWPVYFVRGLIWISLTVSLLVQ 120
Query: 119 RSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFT 178
RSKW R+L ++WWMSF LLV ALNIEI+ T++I + ++P VN LLLF AFRN
Sbjct: 121 RSKWTRILSSIWWMSFFLLVSALNIEIIVETHSIQIFVMVPWLVNFLLLFCAFRNICPSL 180
Query: 179 SPNREDKSLSEPLLAE---KNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLV 235
S DKS+SEPLLA+ K+ + K+ + KLTFSWINPLL LGYSKPL LEDIPSL
Sbjct: 181 SLEASDKSVSEPLLAKNPVKSSIDFSKSSFISKLTFSWINPLLRLGYSKPLVLEDIPSLT 240
Query: 236 PEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVV 295
PEDEA AY+ FA+AW+ L RE NS N NLV + + VY KE +F+AICALLRTI+VVV
Sbjct: 241 PEDEAELAYKNFAHAWELLQREKNSTNTSNLVLRALAKVYWKETVFVAICALLRTISVVV 300
Query: 296 GPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355
PLLLYAFVNYSNR EENL EGL +VGCL+I KVVES +QRH F SRRSGMRMRSALMV
Sbjct: 301 SPLLLYAFVNYSNRKEENLSEGLFLVGCLVIAKVVESVSQRHWFLDSRRSGMRMRSALMV 360
Query: 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGV 415
AVYQKQLKLSSLGR++HS GEIVNYI VDAYRM EF +WFH WS LQLFL+IGVLF V
Sbjct: 361 AVYQKQLKLSSLGRRRHSAGEIVNYIVVDAYRMAEFLWWFHSMWSYMLQLFLSIGVLFVV 420
Query: 416 VGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWE 475
VGLGAL GLV ICG LNVPFAKIL+ CQ+E M+AQD RLRSTSEILN+MK+IKLQSWE
Sbjct: 421 VGLGALSGLVPLFICGFLNVPFAKILKTCQTELMMAQDRRLRSTSEILNSMKVIKLQSWE 480
Query: 476 EKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTI 535
+KFK+LIES RE EFKWL+EAQ +K Y TV+YW+SPTIISSVIF+GCAL G APLNASTI
Sbjct: 481 DKFKNLIESLREVEFKWLAEAQYKKCYNTVLYWLSPTIISSVIFVGCALLG-APLNASTI 539
Query: 536 FTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSV 595
FT+LA LR MGEPVRMIPEALS +IQVKVSFDR+NAFLLD EL ++++R ++ S SV
Sbjct: 540 FTILAALRCMGEPVRMIPEALSALIQVKVSFDRLNAFLLDDELKSEEIRHVTWPNSGHSV 599
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655
KI G FSW+PE AI TLR VNL ++ KIA+CG VGAGKSSLL+AILGEIPKISGTV+
Sbjct: 600 KINAGKFSWEPESAILTLREVNLTVQRGHKIAICGPVGAGKSSLLHAILGEIPKISGTVD 659
Query: 656 LYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
++GSIAYVSQTSWIQSG+IRDNILYGKPMD +Y+KAIKACALDKDIN+FDHGD TEIG
Sbjct: 660 VFGSIAYVSQTSWIQSGTIRDNILYGKPMDTTKYEKAIKACALDKDINSFDHGDETEIGH 719
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
RGLN+SGGQKQR+QLARAVYNDADIYL DDPFSAVDAHTAA LFNECVMAAL KTVILV
Sbjct: 720 RGLNMSGGQKQRMQLARAVYNDADIYLLDDPFSAVDAHTAAILFNECVMAALAHKTVILV 779
Query: 776 THQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQG 835
THQVEFLSEVD+ILV+E GQITQSG+Y+ELL +GTAFEQLVNAH++A+T L N Q
Sbjct: 780 THQVEFLSEVDKILVMEAGQITQSGSYEELLTSGTAFEQLVNAHKNAVTVL-EFSNDEQV 838
Query: 836 GAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGL--TQLTEDEEMEIGDVGWKPFMDYL 893
+K+++ E+ +G KE+SEGEIS+KGL QLTE+EE EIGDVGWKPF+DYL
Sbjct: 839 EPQKLDQNLL---EKSHGSLFTKENSEGEISMKGLPGVQLTEEEETEIGDVGWKPFLDYL 895
Query: 894 NVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVY 953
VS GM L+ LG++ QSGF+ LQAA+TYWLA I+IP I++ +LIGVY +ST SAVFVY
Sbjct: 896 LVSNGMLLMSLGIITQSGFIALQAASTYWLALGIRIPNISNTLLIGVYTAISTLSAVFVY 955
Query: 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSI 1013
FRSF AA LGLKASKAFF+GFTNSIF APMLFFDSTPVGRILTR SSD S++DFDIPFSI
Sbjct: 956 FRSFCAARLGLKASKAFFAGFTNSIFNAPMLFFDSTPVGRILTRASSDFSVVDFDIPFSI 1015
Query: 1014 VFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPV 1073
+FV A+G EL+ IGIM VTWQVL VAIFAMV +VQ YY+A+ARELIRINGTTKAPV
Sbjct: 1016 IFVVAAGLELITTIGIMASVTWQVLFVAIFAMVTANYVQGYYLASARELIRINGTTKAPV 1075
Query: 1074 MNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL 1133
MNY AETS GVVTIRAF MVDRFFQNYL+L+D DA LFF++N +EWL+LR+E LQNLTL
Sbjct: 1076 MNYAAETSLGVVTIRAFKMVDRFFQNYLELIDTDAKLFFYSNAAIEWLVLRIEMLQNLTL 1135
Query: 1134 FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI 1193
TAAL LVL+P+G V PGLVGLSLSYA LTG+QVFLSRWYC L+NYI+SVERIKQFM I
Sbjct: 1136 VTAALLLVLLPKGVVVPGLVGLSLSYALALTGSQVFLSRWYCNLSNYIVSVERIKQFMRI 1195
Query: 1194 PPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTG 1253
PPEPPAIVE KRPPSSWP KGRIEL+ LKI+YRPNAPLVLKGITCTF EGTRVGVVGRTG
Sbjct: 1196 PPEPPAIVEGKRPPSSWPSKGRIELQNLKIKYRPNAPLVLKGITCTFKEGTRVGVVGRTG 1255
Query: 1254 SGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDP 1313
SGKTTLISALFRLVEP G ILIDG+DICS+GLKDLR+KLSIIPQE TLF+GS+RTNLDP
Sbjct: 1256 SGKTTLISALFRLVEPESGKILIDGLDICSIGLKDLRMKLSIIPQEATLFKGSIRTNLDP 1315
Query: 1314 LGLYSDDEIWKALEKCQLKTTISSLPNKLDSS 1345
LGLYSD+EIW+ALEKCQLK TISSLPN LDSS
Sbjct: 1316 LGLYSDNEIWEALEKCQLKATISSLPNLLDSS 1347
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482528|ref|XP_002276236.2| PREDICTED: ABC transporter C family member 8-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1932 bits (5005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 952/1351 (70%), Positives = 1118/1351 (82%), Gaps = 19/1351 (1%)
Query: 1 MAFLGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRI 60
MA + LGG SW D+G FC+Q+TI+DV+NL+F VF + L++GS RKN +
Sbjct: 1 MASWDSSLGGFSWNSGEGLDMGFFCVQTTILDVLNLLFLSVFCVILVMGSVRKNVIFEHS 60
Query: 61 RRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVK 118
RR+ VS VS CCAVV I YL LW+L KN+ S +SW VRGL+W+SLA SLL++
Sbjct: 61 RRDWVSGGVSICCAVVSIGYLSAGLWDLFVKNEGSGHLSWWAYFVRGLVWISLAASLLIQ 120
Query: 119 RSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFT 178
R K IR+L +LWW++F LL ALNIEIL +T+ I V ++P V+ LLLF AFRN H
Sbjct: 121 RPKCIRILSSLWWLAFFLLGSALNIEILVKTHNIQVFDMVPWLVSFLLLFCAFRNICHHD 180
Query: 179 SPNREDKSLSEPLLA---EKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLV 235
SP+ D+S+SEPLL EK+ ELGK+ + KLTFSWINPLL LGYSKPL LEDIPSLV
Sbjct: 181 SPDTPDRSVSEPLLGKKPEKSSVELGKSSFISKLTFSWINPLLCLGYSKPLVLEDIPSLV 240
Query: 236 PEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVV 295
ED A AYQKFA+AW+ L +E NN+ NLV + + VY KE + I AL +TI+VVV
Sbjct: 241 SEDGAELAYQKFAHAWEQLQKEKTPNNSCNLVLQALARVYWKETLSAGIFALFKTISVVV 300
Query: 296 GPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355
PLLLYAFV YSN EN EG+ +VGCL++ K+VES +QRH F SRRSGMRMRS+LMV
Sbjct: 301 SPLLLYAFVKYSNHSGENWHEGVFLVGCLVLNKLVESLSQRHWFLNSRRSGMRMRSSLMV 360
Query: 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGV 415
AVYQKQLKLSSLGR +HSTGEIVNYIA+DAYRMGEFP+WFH WS LQLFL+IGVLFG+
Sbjct: 361 AVYQKQLKLSSLGRGRHSTGEIVNYIAIDAYRMGEFPWWFHTMWSFILQLFLSIGVLFGI 420
Query: 416 VGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWE 475
VGLGAL GLV LICGLLNVPFAKI+Q+CQ +FM+AQD+RLRSTSEILN+MK+IKLQSWE
Sbjct: 421 VGLGALTGLVPLLICGLLNVPFAKIIQRCQFQFMMAQDQRLRSTSEILNSMKVIKLQSWE 480
Query: 476 EKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTI 535
EKFK+LIES R+ EFKWL+EA +K Y TV+YW+SP+II SVIFLGC + SAPL+ASTI
Sbjct: 481 EKFKNLIESLRDIEFKWLAEAHYKKCYCTVLYWLSPSIIPSVIFLGCVVFRSAPLDASTI 540
Query: 536 FTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSV 595
FTVLA LR M EPVR IPEALS +IQ+KVSFDR+NAFLLD E+ ++++R++ + S SV
Sbjct: 541 FTVLAALRCMSEPVRTIPEALSALIQIKVSFDRLNAFLLDDEVKSEEIRKVVVPNSHYSV 600
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655
+ FSWDP+ I TLR VN+++KW QK+AVCG VGAGKSSLLYAILGEIPK+SGTV+
Sbjct: 601 IVNGCGFSWDPKSTILTLRDVNMEVKWGQKVAVCGPVGAGKSSLLYAILGEIPKVSGTVD 660
Query: 656 LYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
++GSIAYVSQTSWIQSG+IRDNILYG+PMDK +Y+KAIKACALDKDIN+FDHGDLTEIGQ
Sbjct: 661 VFGSIAYVSQTSWIQSGTIRDNILYGRPMDKTKYEKAIKACALDKDINSFDHGDLTEIGQ 720
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
RGLN+SGGQKQRIQLARAVYNDA+IYL DDPFSAVDAHTAA LFN+C+M+AL +KTVILV
Sbjct: 721 RGLNMSGGQKQRIQLARAVYNDANIYLLDDPFSAVDAHTAAVLFNDCIMSALAQKTVILV 780
Query: 776 THQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQG 835
THQVEFLS VD+ILV+EGGQITQSG+Y+EL AGTAFEQLVNAH++A T + + Q
Sbjct: 781 THQVEFLSAVDKILVMEGGQITQSGSYEELFAAGTAFEQLVNAHKNATTVMNLSNKEIQE 840
Query: 836 GAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGL--TQLTEDEEMEIGDVGWKPFMDYL 893
K+++ P KES EGEIS+KGL QLTE+EE EIGDVGWKPF+DYL
Sbjct: 841 EPHKLDQS------------PTKESGEGEISMKGLQGVQLTEEEEREIGDVGWKPFLDYL 888
Query: 894 NVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVY 953
VSKG LL L ++ +SGF+ LQAA+TYWLA AI++PKI++G+LIGVYAG+ST S F+Y
Sbjct: 889 LVSKGSFLLFLCIITKSGFIALQAASTYWLALAIEMPKISNGMLIGVYAGLSTLSTGFIY 948
Query: 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSI 1013
RSFF A LGLKASKAFF+GFTNSIFKAPMLFFDSTPVGRILTR SSDLS+LDFDIPFSI
Sbjct: 949 LRSFFGARLGLKASKAFFAGFTNSIFKAPMLFFDSTPVGRILTRASSDLSVLDFDIPFSI 1008
Query: 1014 VFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPV 1073
+FV ASG ELL+IIG+ +TW VL+VAIFA+VAV +VQ YY+A+ARELIRINGTTKAPV
Sbjct: 1009 IFVVASGLELLSIIGVTASITWPVLIVAIFAIVAVYYVQGYYLASARELIRINGTTKAPV 1068
Query: 1074 MNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL 1133
M+Y AETS GVVTIRAFNMVDRFFQNYL+L++ DA LFF++N +EWL+LR+E LQNLTL
Sbjct: 1069 MSYAAETSLGVVTIRAFNMVDRFFQNYLELIETDAKLFFYSNAAIEWLVLRIEILQNLTL 1128
Query: 1134 FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI 1193
TAAL LVL+P+GYVAPGLVGLSLSYA LTGTQVF SRWYC L+NY++SVERIKQFMHI
Sbjct: 1129 VTAALLLVLLPKGYVAPGLVGLSLSYALALTGTQVFFSRWYCNLSNYVVSVERIKQFMHI 1188
Query: 1194 PPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTG 1253
P EPPAIVE+KRPP+SWP KGRI+L+ LKI+YRPNAPLVLKGITCTF EGTRVG+VGRTG
Sbjct: 1189 PSEPPAIVEEKRPPTSWPSKGRIDLQYLKIKYRPNAPLVLKGITCTFKEGTRVGIVGRTG 1248
Query: 1254 SGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDP 1313
SGKTTLISALFRLVEP G I IDG+DICS+GLKDLR+KLSIIPQEPTLF+GS+RTNLDP
Sbjct: 1249 SGKTTLISALFRLVEPESGKIFIDGLDICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDP 1308
Query: 1314 LGLYSDDEIWKALEKCQLKTTISSLPNKLDS 1344
LGLYSDDEIW+ALEKCQLK TISSLPN LDS
Sbjct: 1309 LGLYSDDEIWEALEKCQLKATISSLPNLLDS 1339
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482524|ref|XP_002276193.2| PREDICTED: ABC transporter C family member 8-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1913 bits (4955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 960/1352 (71%), Positives = 1123/1352 (83%), Gaps = 11/1352 (0%)
Query: 1 MAFLGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRI 60
MA L LGG SW C E DLGSFCIQ TI+DV+NL+F VF + L++G RK+ G
Sbjct: 1 MASLEISLGGFSWVCGEELDLGSFCIQRTILDVLNLLFLSVFSVILVIGYIRKHEISGCS 60
Query: 61 RRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVK 118
RR+ VS VS CCA+ GIAY+ W+L+ +N S + WLV VRGL W+SLA+SLLV+
Sbjct: 61 RRDWVSGGVSICCALTGIAYVSAGFWDLVVRNGGSQPLGWLVYFVRGLTWISLAVSLLVR 120
Query: 119 RSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFT 178
SKW R+L LWW++F LV LNIEIL +T+ I + I+P VN LL+F AFRN H
Sbjct: 121 SSKWSRILSFLWWLTFFSLVSTLNIEILVKTHNIKIFDIVPWLVNSLLIFCAFRNIFHSV 180
Query: 179 SPNRE-DKSLSEPLLAEK--NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLV 235
S + DKS SEPLLA+K +TE+GK + KLTFSWINP+L LG SKPL LED+P L
Sbjct: 181 SEDTTPDKSESEPLLAKKPVRRTEVGKISFITKLTFSWINPILCLGNSKPLVLEDVPPLA 240
Query: 236 PEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVV 295
EDEA AYQKF+ AW+ L RE +S++ NLV + + VYLKE IF+ +CALLRTI+VVV
Sbjct: 241 SEDEAELAYQKFSQAWECLQRERSSSSTDNLVFRALAIVYLKEMIFVGLCALLRTISVVV 300
Query: 296 GPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355
PLLLYAFV YS R EEN QEG+ ++GCLII+KVVES +QRH F +RR GMRMRSALMV
Sbjct: 301 SPLLLYAFVKYSTRDEENWQEGVFLMGCLIISKVVESVSQRHWFLNARRFGMRMRSALMV 360
Query: 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGV 415
AVYQKQLKLSSLGR++HS+G+IVNYIAVDAY GEFP+WFH WS LQLFL+IGVLFGV
Sbjct: 361 AVYQKQLKLSSLGRRRHSSGQIVNYIAVDAYTTGEFPWWFHSAWSYILQLFLSIGVLFGV 420
Query: 416 VGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWE 475
VG+GAL GL L+CGLLNVPFAKILQKCQS+ M+A+D+RLRSTSEILN+MK+IKLQSWE
Sbjct: 421 VGVGALSGLAPLLVCGLLNVPFAKILQKCQSQLMMARDQRLRSTSEILNSMKVIKLQSWE 480
Query: 476 EKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTI 535
+KFK+ IES R+ EFKWL+EAQ +K Y TV+YWMSPTI+SSV FLGCAL GSAPLNASTI
Sbjct: 481 DKFKNFIESLRDVEFKWLAEAQYKKCYNTVLYWMSPTIVSSVTFLGCALFGSAPLNASTI 540
Query: 536 FTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSV 595
FT++A LR MGEPVRMIPEA+S+MIQ K+SF+R+NAF LD EL ++++RR++L SD SV
Sbjct: 541 FTIVAALRCMGEPVRMIPEAISVMIQAKISFERLNAFFLDDELKSEEMRRVTLPNSDHSV 600
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655
I GNFSW+PE A+ TLR +NL +K Q +AVCG VGAGKSS L+AILGEIPKISG+V+
Sbjct: 601 VINGGNFSWEPESAVLTLRDINLGVKRGQILAVCGPVGAGKSSFLFAILGEIPKISGSVD 660
Query: 656 LYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
++GSIAYVSQTSWIQSG+IRDNIL GKPMD +Y+KAIKACALDKDIN+FDHGD TEIGQ
Sbjct: 661 VFGSIAYVSQTSWIQSGTIRDNILCGKPMDTTKYEKAIKACALDKDINSFDHGDETEIGQ 720
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
RGLN+SGGQKQRIQLARA+YNDA+IYL DDPFSAVDAHTAA LFN+CVMAAL KTV+LV
Sbjct: 721 RGLNMSGGQKQRIQLARALYNDAEIYLLDDPFSAVDAHTAAILFNDCVMAALRHKTVMLV 780
Query: 776 THQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQG 835
THQVEFLS+V++ILVLEGG+ITQSG+Y+ELL GTAFEQLVNAH++AIT L +N G
Sbjct: 781 THQVEFLSQVEKILVLEGGRITQSGSYEELLTTGTAFEQLVNAHKNAITVLDLSNNEG-- 838
Query: 836 GAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLT--QLTEDEEMEIGDVGWKPFMDYL 893
E+ +K PE +G P KE SEGEIS+KGL QLTE+E MEIGDVGWK F DYL
Sbjct: 839 --EETQKLDHILPEVSHGSCPTKERSEGEISMKGLRGGQLTEEEGMEIGDVGWKAFWDYL 896
Query: 894 NVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVY 953
VSKG L+ G++AQ GFV LQAA+TYWLA I+IPKI++G+LIGVYAG+ST SAVFVY
Sbjct: 897 LVSKGALLMFSGMIAQCGFVALQAASTYWLALGIEIPKISNGMLIGVYAGISTLSAVFVY 956
Query: 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSI 1013
RSF A LGLKASKAFF+GFT+SIF APM FFDSTPVGRILTR SSDL++LD +IPFSI
Sbjct: 957 LRSFLIARLGLKASKAFFAGFTSSIFNAPMHFFDSTPVGRILTRASSDLTVLDSNIPFSI 1016
Query: 1014 VFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPV 1073
+FV ++G ++L IGIM VTW VL+VAIFAMVA ++VQ YY+A+ARELIRINGTTKAPV
Sbjct: 1017 IFVLSAGIDILTTIGIMASVTWPVLIVAIFAMVAAKYVQGYYLASARELIRINGTTKAPV 1076
Query: 1074 MNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL 1133
MNY AE+S GVVTIRAFNMVDRFFQNYLKL+D DA LFF++N MEWL+LR+EALQNLTL
Sbjct: 1077 MNYAAESSLGVVTIRAFNMVDRFFQNYLKLIDTDAKLFFYSNAAMEWLVLRIEALQNLTL 1136
Query: 1134 FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI 1193
TAAL LVL+P+GYVAPGLVGLSLSYA LTGTQV LSRWYC L+NY++SVERIKQFMHI
Sbjct: 1137 VTAALLLVLLPKGYVAPGLVGLSLSYALALTGTQVMLSRWYCNLSNYMVSVERIKQFMHI 1196
Query: 1194 PPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTG 1253
P EPPAIV+ KRPPSSWP KGRIEL+ LKI+YRPN+PLVLKGITC F EGTRVGVVGRTG
Sbjct: 1197 PSEPPAIVDGKRPPSSWPSKGRIELQNLKIKYRPNSPLVLKGITCIFKEGTRVGVVGRTG 1256
Query: 1254 SGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDP 1313
SGKTTLISALFRLVEP G+IL+DG+DICS+GLKDLR+KLSIIPQEPTLF+GS+RTNLDP
Sbjct: 1257 SGKTTLISALFRLVEPESGTILVDGLDICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDP 1316
Query: 1314 LGLYSDDEIWKALEKCQLKTTISSLPNKLDSS 1345
LGLYS++EIWKALEKCQLK TISSLPN LDSS
Sbjct: 1317 LGLYSENEIWKALEKCQLKATISSLPNLLDSS 1348
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358349246|ref|XP_003638650.1| Multidrug resistance protein ABC transporter family [Medicago truncatula] gi|355504585|gb|AES85788.1| Multidrug resistance protein ABC transporter family [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1862 bits (4824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 921/1351 (68%), Positives = 1093/1351 (80%), Gaps = 23/1351 (1%)
Query: 1 MAFLGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRI 60
MA+ +G +SW C FD S C Q ++ID IN++F CV+ SL++ RK+ G
Sbjct: 1 MAYFDNTIGEISWICLKNFDFNSLCSQRSLIDTINILFVCVYCTSLIITLIRKSSTNGSH 60
Query: 61 RRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSSMSWLVSTVRGLIWVSLAISLLVKRS 120
+ + I+VS CC + IA+ LW+ IAK D+S L ++GLIW+SL++SL+V+R
Sbjct: 61 GKCWIFIIVSICCGTISIAFFSIGLWDFIAKTDNSEK-LSCIIKGLIWISLSVSLIVQRV 119
Query: 121 KWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSP 180
KWIR+LI++WW +LV +LNIEIL R + I I+ V+ LLL+ AF+N + +
Sbjct: 120 KWIRILISIWWTFSCVLVSSLNIEILLRNHAIETFDIVQWLVHFLLLYCAFKNLDYIGTH 179
Query: 181 NREDKSLSEPLLAEKN---QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPE 237
+ ++ L+EPLLA KN QT LG+A L KL FSWIN LLSLGYSKPL LEDIPS+V E
Sbjct: 180 SVQE-GLTEPLLAGKNETKQTGLGRATFLSKLNFSWINSLLSLGYSKPLDLEDIPSVVSE 238
Query: 238 DEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGP 297
DEA +YQKF AW+SLVRE NN +LV I +LKENI IA AL+RT++V V P
Sbjct: 239 DEADMSYQKFVNAWESLVRERTKNNTKSLVLWSIVRTFLKENILIAFYALIRTVSVAVSP 298
Query: 298 LLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAV 357
L+LYAFVNYSNR E +L++GLSIVG LI+TKV ES +QRH FF SRRSGM+MRSALMVAV
Sbjct: 299 LILYAFVNYSNRTEADLKQGLSIVGILILTKVFESLSQRHWFFNSRRSGMKMRSALMVAV 358
Query: 358 YQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVG 417
Y+KQLKLSS R++HS GEIVNYIAVDAYRMGEFP+WFH TW+ A QL L+I VLFGVVG
Sbjct: 359 YRKQLKLSSSARQRHSAGEIVNYIAVDAYRMGEFPWWFHTTWTCAFQLILSISVLFGVVG 418
Query: 418 LGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK 477
+GALPGLV LICGLLNVPFA+ILQ CQS+FMIAQDERLRSTSE+LN+MKIIKLQSWEEK
Sbjct: 419 VGALPGLVPLLICGLLNVPFARILQNCQSQFMIAQDERLRSTSEVLNSMKIIKLQSWEEK 478
Query: 478 FKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFT 537
FK+L+E R+KEF WLS+AQ+ KA + +YWMSPT++S+V+F+GCA+T SAPLNA TIFT
Sbjct: 479 FKNLVELLRDKEFVWLSKAQILKATNSFLYWMSPTVVSAVVFVGCAVTKSAPLNAETIFT 538
Query: 538 VLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKI 597
VLATLR+MGEPVRMIPEALSI+IQVKVSFDR+ FLLD ELNNDD R Q S +V+I
Sbjct: 539 VLATLRNMGEPVRMIPEALSILIQVKVSFDRLTNFLLDEELNNDDSERNIQQLSVNAVEI 598
Query: 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY 657
Q+GNF+WD E PTL+ VNL+IKW QKIAVCG VGAGKSSLLYAILGEIPKI GTVN+
Sbjct: 599 QDGNFNWDHESMSPTLKDVNLEIKWRQKIAVCGPVGAGKSSLLYAILGEIPKIQGTVNVG 658
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
G++AYVSQ+SWIQSG++++NIL+GKPMDK RY+KAIKACALDKDIN+F HGDLTEIGQRG
Sbjct: 659 GTLAYVSQSSWIQSGTVQENILFGKPMDKRRYEKAIKACALDKDINDFSHGDLTEIGQRG 718
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
+N+SGGQKQRIQLARAVYNDADIYL DDPFSAVDAHTAA LFN+CVM AL +KTVILVTH
Sbjct: 719 INMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTH 778
Query: 778 QVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGA 837
QVEFLSEVD ILV+EGG++ QSG+Y+ LL AGTAFEQLV AH+D IT L N Q
Sbjct: 779 QVEFLSEVDTILVMEGGKVIQSGSYENLLTAGTAFEQLVRAHKDTITEL----NQDQENK 834
Query: 838 EKVEKGRTARPEEPNGIYPRKESSEGEI-SVKGL--TQLTEDEEMEIGDVGWKPFMDYLN 894
E E A K SEGEI S+KG QLT++EE IG+VGWKPF DY+N
Sbjct: 835 EGSENEVLA-----------KHQSEGEISSIKGPIGAQLTQEEEKVIGNVGWKPFWDYIN 883
Query: 895 VSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYF 954
SKG +LC+ +L+QSGF+ LQ ++TYWLA AI+IPK+T+ LIGVYA +S +SA FVY
Sbjct: 884 YSKGTFMLCMIMLSQSGFMALQTSSTYWLAIAIEIPKVTNAALIGVYALISFSSAAFVYV 943
Query: 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIV 1014
RS+ A LGLKAS FFS FT +IF APMLFFDSTPVGRILTR SSDLSILDFDIP+SI
Sbjct: 944 RSYLTALLGLKASTVFFSSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSIT 1003
Query: 1015 FVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVM 1074
FVA+ E+L II ++ VTWQVL+VA+ AMVA +VQ+YY ATA ELIRINGTTKAPVM
Sbjct: 1004 FVASIAIEVLVIICVVASVTWQVLIVAVPAMVASIYVQQYYQATASELIRINGTTKAPVM 1063
Query: 1075 NYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLF 1134
N+ AETS GVVT+R+FNMVDRFF+NYLKLVD DASLFFH+NG MEW++LR+EALQNLT+
Sbjct: 1064 NFAAETSLGVVTVRSFNMVDRFFKNYLKLVDTDASLFFHSNGAMEWVVLRIEALQNLTVI 1123
Query: 1135 TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIP 1194
TAAL L+L+P+GYV+PGLVGLSLSYAFTLTG Q+F SRW+ L+N+IISVERI QF+HIP
Sbjct: 1124 TAALLLILLPQGYVSPGLVGLSLSYAFTLTGAQIFWSRWFSNLSNHIISVERINQFIHIP 1183
Query: 1195 PEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGS 1254
EPPAIV++ RPPSSWP KG+I+L+ L+IRYRPN+PLVLKGI CTF EG+RVGVVGRTGS
Sbjct: 1184 AEPPAIVDNNRPPSSWPSKGKIDLQGLEIRYRPNSPLVLKGIICTFKEGSRVGVVGRTGS 1243
Query: 1255 GKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL 1314
GK+TLISALFRLVEP+ G ILIDGV+ICS+GLKDLR KLSIIPQEPTLF+GS+RTNLDPL
Sbjct: 1244 GKSTLISALFRLVEPSRGDILIDGVNICSIGLKDLRTKLSIIPQEPTLFKGSIRTNLDPL 1303
Query: 1315 GLYSDDEIWKALEKCQLKTTISSLPNKLDSS 1345
GLYSDDEIWKA+EKCQLK TIS LPN LDSS
Sbjct: 1304 GLYSDDEIWKAVEKCQLKETISKLPNLLDSS 1334
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528857|ref|XP_003533014.1| PREDICTED: ABC transporter C family member 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1853 bits (4801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 918/1344 (68%), Positives = 1078/1344 (80%), Gaps = 14/1344 (1%)
Query: 10 GLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRRECVSIVV 69
SW C GEF L SF Q IID+IN+ F VFY SLL +K+ R+ + +V
Sbjct: 14 NFSWICLGEFSLTSFSTQRCIIDIINIFFMGVFYASLLSNLIKKSPASSSYRKGWIHVVA 73
Query: 70 SACCAVVGIAYLGYCLWNLIAKNDS---SMSWLVSTVRGLIWVSLAISLLVKRSKWIRML 126
S CC ++ IAY LWNLIAK + ++ LV +RGL+W+SLA+SL V+RS+WI++
Sbjct: 74 SVCCTLLSIAYFIDGLWNLIAKKTTGFNQLNLLVCIIRGLVWISLAVSLFVQRSQWIKIS 133
Query: 127 ITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPNREDKS 186
++WWM+ LV A N+EIL + +T + Y+ PV++L +F AF+N F D S
Sbjct: 134 CSIWWMTSCTLVSAFNVEILVKEHTFEIFYMAIWPVHILTIFCAFQNHGFFVPQETPDAS 193
Query: 187 LSEPLLAEKN---QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFA 243
L EPLL K+ QTELG A + +FSW+N LLSLGYSKPLALEDIPSL ED+A FA
Sbjct: 194 LCEPLLVHKDMHKQTELGHASFCSRFSFSWMNALLSLGYSKPLALEDIPSLASEDKADFA 253
Query: 244 YQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAF 303
YQKF +AWDSL+RE NN+ NLV I VYL ENIFIAICA LRTI VV PLL+YAF
Sbjct: 254 YQKFVHAWDSLLRERGRNNSRNLVLWSIARVYLNENIFIAICAFLRTICAVVSPLLVYAF 313
Query: 304 VNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLK 363
VNYS+ EE L++G++IVGCLI KVVES +QRH F SRR GM+MRSALM AVYQKQLK
Sbjct: 314 VNYSSSIEEELKQGIAIVGCLIFAKVVESVSQRHWSFNSRRLGMKMRSALMAAVYQKQLK 373
Query: 364 LSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPG 423
LS+LGR++HSTGEIVNYIAVDAYRMGEFP+WFH ALQ+FLA+GVLFGVVGLGALPG
Sbjct: 374 LSALGRRRHSTGEIVNYIAVDAYRMGEFPWWFHTLMFSALQVFLALGVLFGVVGLGALPG 433
Query: 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIE 483
LV +ICG LNVPFAKILQKC+SEFMIAQDERLRSTSEIL++MKIIKLQSWE+ FK +E
Sbjct: 434 LVPLIICGFLNVPFAKILQKCRSEFMIAQDERLRSTSEILSSMKIIKLQSWEDNFKKFVE 493
Query: 484 SRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLR 543
S R KEFK L+EAQ +AYGT IYWMSP IISSVIF+GCAL S+PLNA+TIF+VLA LR
Sbjct: 494 SLRAKEFKCLAEAQFMRAYGTFIYWMSPAIISSVIFVGCALFQSSPLNAATIFSVLAALR 553
Query: 544 SMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKS-DRSVKIQEGNF 602
SMGEPV +IPEALS++IQVKVSFDRIN FLLD E+ +DD+RR S Q S +SV+I GNF
Sbjct: 554 SMGEPVTLIPEALSVLIQVKVSFDRINTFLLDDEIKSDDIRRTSKQDSCSKSVEILAGNF 613
Query: 603 SWDPELAIP-TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA 661
SWD + ++P TLR VN +IKW Q +AVCG VGAGK+SLLYAILGEIPKISG V++ G++A
Sbjct: 614 SWDQQQSVPPTLRKVNFEIKWGQTVAVCGPVGAGKTSLLYAILGEIPKISGIVSVCGTLA 673
Query: 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721
YVSQT WIQSG+IRDNILYGKPMD+ RY IK CALDKDI+ F HGDLTEIGQRG+N+S
Sbjct: 674 YVSQTPWIQSGTIRDNILYGKPMDETRYGYTIKVCALDKDIDGFRHGDLTEIGQRGINMS 733
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781
GGQKQRIQLARAVYNDADIYL DDPFSAVDAHTA+ LFN+CV AL +KTVILVTHQVEF
Sbjct: 734 GGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTASILFNDCVRVALRRKTVILVTHQVEF 793
Query: 782 LSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVE 841
LS+VD+ILV+E G+ITQ GNY++LL AGTAFEQL++AHR+AITG+ +VE
Sbjct: 794 LSKVDKILVMERGKITQLGNYEDLLTAGTAFEQLLSAHREAITGI----EKSSAYKREVE 849
Query: 842 KGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSL 901
+ E+ + K S+G+IS K QLT++EE E GDVGWKPF DY+ KG L
Sbjct: 850 NLVAVQLEDSHVCNLTKGGSDGDISTK--IQLTQEEEKESGDVGWKPFCDYIFFPKGSLL 907
Query: 902 LCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAH 961
LCL +LAQ FVG QAA+TYWLA AI++ K+TS ILIGVY+ +S S VFVY RS+FAAH
Sbjct: 908 LCLSILAQFAFVGFQAASTYWLALAIEMQKVTSSILIGVYSVISFLSIVFVYLRSYFAAH 967
Query: 962 LGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGT 1021
LGLKASKAFFS FT++IF APMLFFDSTP+GRILTR SSDLSILDFDIPF+ +FV +
Sbjct: 968 LGLKASKAFFSAFTDAIFNAPMLFFDSTPIGRILTRASSDLSILDFDIPFTTIFVTSEIA 1027
Query: 1022 ELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETS 1081
ELL +IGIM VTWQVL+VA+ AMVA ++VQ YY A+ARE+IRINGTTKAP+MN+TAETS
Sbjct: 1028 ELLTMIGIMVSVTWQVLIVAVLAMVASKYVQGYYQASAREIIRINGTTKAPLMNFTAETS 1087
Query: 1082 QGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV 1141
G VTIRAFNM DRFF+NYL LVD DA++FFH+N +EWLILR+E LQNLTLFTAAL LV
Sbjct: 1088 LGAVTIRAFNMTDRFFKNYLNLVDTDATMFFHSNAAIEWLILRIELLQNLTLFTAALLLV 1147
Query: 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIV 1201
L+P+GYVAPGLVGLSLSYAF+LT T V+L+R +C L+NY+ISVERIKQF+HIP EP AIV
Sbjct: 1148 LLPKGYVAPGLVGLSLSYAFSLTATVVYLTRMFCNLSNYVISVERIKQFIHIPAEPSAIV 1207
Query: 1202 EDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLIS 1261
ED RPP SWP KGRI+L+ L+IRYRPNAPLVLKGI+C F EG+RVGVVGRTGSGKTTLIS
Sbjct: 1208 EDNRPPPSWPSKGRIDLQSLEIRYRPNAPLVLKGISCRFEEGSRVGVVGRTGSGKTTLIS 1267
Query: 1262 ALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDE 1321
ALFRLVEP G ILIDG++ICS+GLKDLR KLSIIPQEPTLF+GS+R NLDPL LYSDDE
Sbjct: 1268 ALFRLVEPTRGDILIDGINICSIGLKDLRTKLSIIPQEPTLFKGSIRKNLDPLCLYSDDE 1327
Query: 1322 IWKALEKCQLKTTISSLPNKLDSS 1345
IWKALEKCQLK TISSLPN LD+S
Sbjct: 1328 IWKALEKCQLKATISSLPNLLDTS 1351
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522202|ref|XP_003529736.1| PREDICTED: ABC transporter C family member 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1829 bits (4737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 905/1345 (67%), Positives = 1083/1345 (80%), Gaps = 24/1345 (1%)
Query: 11 LSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRRECVSIVVS 70
SWTC +F+ SFC Q T ID INL+F C FY S+++ R+ R + +V S
Sbjct: 495 FSWTCLKDFEFTSFCSQRTTIDTINLLFVCFFYTSMIISIIRRCSISCSFRTKWTFLVAS 554
Query: 71 ACCAVVGIAYLGYCLWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVKRSKWIRMLIT 128
CCA++ IA+ LW LI K D++ +SW+ VRG +W SLA+SLLV+R KWI++L
Sbjct: 555 ICCAIISIAFYSIGLWILIVKTDNTKQLSWVACVVRGFVWTSLAVSLLVQREKWIKILNC 614
Query: 129 LWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPNREDKSLS 188
WW +LV +L IEIL R + I + I+ + LLLF AF+N ++ S + + SLS
Sbjct: 615 AWWTCSCVLVSSLIIEILLRKHAIEIFDIVQWLTHFLLLFCAFQNLCYYVSQSLPE-SLS 673
Query: 189 EPLLAEK---NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQ 245
EPLLA++ QTELG + L KLTFSW+N LL LGYSKPLALEDIPSL+ EDEA FAYQ
Sbjct: 674 EPLLAQEVDTKQTELGHSTFLSKLTFSWVNSLLRLGYSKPLALEDIPSLLSEDEAEFAYQ 733
Query: 246 KFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVN 305
F + W+SLVRE++ +N NLV + +LKENI IA ALLRTIAV V PL+LYAFVN
Sbjct: 734 NFMHTWESLVRESSKDNTKNLVLWSVVRTHLKENILIAFYALLRTIAVTVSPLILYAFVN 793
Query: 306 YSNR---GEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQL 362
YSN + NL+EGLSIVG LI+++VV+S +QRH FF SRRSG+++RSALMVAVY+KQL
Sbjct: 794 YSNSRDAKQTNLKEGLSIVGFLILSRVVDSVSQRHWFFDSRRSGLKIRSALMVAVYKKQL 853
Query: 363 KLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALP 422
KLSS R++HSTGEIVNYIAVD YRMGEFP+WFH++W+ A+QL L++GVLFGVVG+GALP
Sbjct: 854 KLSSSARRRHSTGEIVNYIAVDTYRMGEFPWWFHISWTSAVQLVLSVGVLFGVVGVGALP 913
Query: 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI 482
GLV +ICGL+NVPFAKILQ C ++FMI+QDERLRSTSEILN+MKIIKLQSWE+KFK+L+
Sbjct: 914 GLVPLVICGLINVPFAKILQHCMAQFMISQDERLRSTSEILNSMKIIKLQSWEDKFKNLV 973
Query: 483 ESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATL 542
E+ R KEF WLS++Q+ K+YGT +YWMSPTI+S+V+FLGCAL SAPLNA TIFTV ATL
Sbjct: 974 ENLRAKEFIWLSKSQMMKSYGTFLYWMSPTIVSAVVFLGCALFNSAPLNAGTIFTVFATL 1033
Query: 543 RSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL-QKSDRSVKIQEGN 601
R++ EPVRMIPEALS+MIQVKVSFDR+N LLD EL++ + R ++ Q S +V+IQ GN
Sbjct: 1034 RNLSEPVRMIPEALSMMIQVKVSFDRLNTVLLDEELDSSNANRRNINQSSVNAVEIQAGN 1093
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA 661
F WD E PTLR VNL I+ QKIAVCG VGAGKSSLL+A+LGE PKISGTVN+ G++A
Sbjct: 1094 FIWDHESVFPTLRDVNLQIEQGQKIAVCGPVGAGKSSLLFAVLGEFPKISGTVNVSGTVA 1153
Query: 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721
YVSQTSWIQSG++RDNIL+GKPMDK RYD AIK CALDKDIN+F HGDLTEIGQRG+N+S
Sbjct: 1154 YVSQTSWIQSGTVRDNILFGKPMDKTRYDDAIKVCALDKDINDFSHGDLTEIGQRGINMS 1213
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781
GGQKQRIQLARAVYNDADIYL DDPFSAVDAHTAA LFN+CVM AL +KTVILVTHQVEF
Sbjct: 1214 GGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMMALREKTVILVTHQVEF 1273
Query: 782 LSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVE 841
LS+VD ILV+EGG++TQ+GNY LL +GTAFEQLV+AH++AI+ L E+
Sbjct: 1274 LSQVDTILVMEGGKVTQAGNYVNLLTSGTAFEQLVSAHKEAISEL-----------EQNN 1322
Query: 842 KGRTARPEEPNGIYPRKESSEGEISVKGL--TQLTEDEEMEIGDVGWKPFMDYLNVSKGM 899
+ +T EE G Y K SEGEIS KG QLT++EE EIGDVGWK DY++ S+
Sbjct: 1323 ENKT-HTEESQGFYLTKNQSEGEISYKGQLGVQLTQEEEKEIGDVGWKTIWDYISFSRCS 1381
Query: 900 SLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFA 959
+LC +L Q FV LQAA+T+WL AI+IPK++S LIGVY+ +S VF + R+
Sbjct: 1382 MMLCWIILGQFAFVVLQAASTFWLVQAIEIPKLSSVTLIGVYSLISFGGTVFAFLRTSIG 1441
Query: 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAAS 1019
AHLGLKAS AFFS FT SIF APMLFFDSTPVGRILTR SSDL+ILDFDIPFSI FVA+
Sbjct: 1442 AHLGLKASTAFFSSFTTSIFNAPMLFFDSTPVGRILTRASSDLTILDFDIPFSITFVASV 1501
Query: 1020 GTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAE 1079
E+L IIGIM +VTWQVL+VA+ AMVA ++VQ YY A+ARELIRINGTTKAPVMN+ AE
Sbjct: 1502 PIEILMIIGIMVYVTWQVLIVAVPAMVASKYVQGYYQASARELIRINGTTKAPVMNFAAE 1561
Query: 1080 TSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF 1139
TS G+VT+RAFNM DRFF+NYLKLVD DA+LFF++N MEWL+LR+E LQNLT+ TAAL
Sbjct: 1562 TSLGLVTVRAFNMADRFFKNYLKLVDTDAALFFYSNAAMEWLVLRIETLQNLTVITAALL 1621
Query: 1140 LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199
LVL+P+GYV+PGLVGLSLSY FTLTGTQ+FL+RWYC L NYIISVERIKQF+ +P EPPA
Sbjct: 1622 LVLVPQGYVSPGLVGLSLSYTFTLTGTQIFLTRWYCNLLNYIISVERIKQFIQLPEEPPA 1681
Query: 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259
IVED RPPSSWP KGRI+L+ L+IRYRPNAPLVLKGITCTF EG+RVGVVGRTGSGK+TL
Sbjct: 1682 IVEDNRPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTL 1741
Query: 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSD 1319
ISALFRLVEPA G ILIDG++ICS+GLKDL++KLSIIPQEPTLF+GS+RTNLDPLGLYSD
Sbjct: 1742 ISALFRLVEPASGDILIDGINICSIGLKDLKIKLSIIPQEPTLFKGSIRTNLDPLGLYSD 1801
Query: 1320 DEIWKALEKCQLKTTISSLPNKLDS 1344
D++WKALEKCQLK TIS LPN LDS
Sbjct: 1802 DDLWKALEKCQLKETISRLPNLLDS 1826
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357515353|ref|XP_003627965.1| ABC transporter C family member [Medicago truncatula] gi|355521987|gb|AET02441.1| ABC transporter C family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1828 bits (4736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 902/1353 (66%), Positives = 1089/1353 (80%), Gaps = 21/1353 (1%)
Query: 1 MAFLGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRI 60
MA +G +SWTC +FDL S C Q +++D IN++F CV+Y SLL+ RK+
Sbjct: 1 MANFWISIGEISWTCLKKFDLNSLCSQRSLVDTINILFLCVYYTSLLITLIRKSCTNESQ 60
Query: 61 RRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVK 118
R+ ++VS CCA++ IA+ + LWNLIAK D+S ++ +V ++G IW+S A+SL+V+
Sbjct: 61 RKCWNFLIVSICCALISIAFFSFGLWNLIAKTDNSEELNLVVCIIKGFIWISFAVSLIVQ 120
Query: 119 RSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFT 178
R K +R+L ++WW+S +LV +LNIEIL + + I I+ V LLL+ AF+N H
Sbjct: 121 RIKLVRILNSIWWLSSCILVSSLNIEILLKNHVIETFDIVQWLVYFLLLYCAFKNLGHIR 180
Query: 179 SPNREDKSLSEPLLAEKN---QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLV 235
NR + LSEPLLA+KN QTELG A L KL FSW+N LLSLGYSKPLALEDIPSLV
Sbjct: 181 D-NRVQECLSEPLLAQKNETAQTELGHATFLSKLIFSWVNSLLSLGYSKPLALEDIPSLV 239
Query: 236 PEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVV 295
EDEA+ AY+KF +AW+SLVRE NN +LV I YLKENI IA AL+RTIAVVV
Sbjct: 240 SEDEANMAYKKFVHAWESLVRERTKNNTKSLVLWSIVRSYLKENILIAFYALIRTIAVVV 299
Query: 296 GPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355
PL+LYAFVNYSNR EE+L++GLSIVG L++TKV ES +QRH FF SRRSGM+MRSALMV
Sbjct: 300 SPLILYAFVNYSNRTEEDLKQGLSIVGFLVVTKVFESVSQRHWFFNSRRSGMKMRSALMV 359
Query: 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGV 415
AVYQKQLKLSS RK+HS GEIVNYIAVD+YRMGEFP+WFH+TW+ ALQLFL+ VLF V
Sbjct: 360 AVYQKQLKLSSSARKRHSVGEIVNYIAVDSYRMGEFPWWFHITWTSALQLFLSTSVLFIV 419
Query: 416 VGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWE 475
VG+GALPGLV LICGL N+PFA+ILQ CQS+FMIAQDERLR+TSEILN+MKIIKLQSWE
Sbjct: 420 VGIGALPGLVPLLICGLFNIPFARILQNCQSQFMIAQDERLRTTSEILNSMKIIKLQSWE 479
Query: 476 EKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTI 535
EKFK+L+ES R+KEF WLS+AQ+ KA G+ +YW+SP ++S+V+FL C++T SAPLNA TI
Sbjct: 480 EKFKNLVESLRDKEFVWLSKAQILKASGSFLYWISPAMVSAVVFLACSVTKSAPLNAETI 539
Query: 536 FTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSV 595
FTVLATLR+MGEPVR IPEALS MIQ KVSFDR+N F LD +LNN++ + Q S ++
Sbjct: 540 FTVLATLRNMGEPVRTIPEALSNMIQAKVSFDRLNNFFLDEDLNNNESEKNLNQCSVNAL 599
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655
+IQ+GNF WD E P L+ VNL+IKW QKIAVCG VG+GKSSLLYAILGEIPKISGTV
Sbjct: 600 QIQDGNFIWDHESMSPALKDVNLEIKWRQKIAVCGPVGSGKSSLLYAILGEIPKISGTVY 659
Query: 656 LYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
+ G++AYVSQ+SWIQSG+++DNIL+GK MDK RY+KAIKACALDKDI++F HGDLTEIG+
Sbjct: 660 VGGTLAYVSQSSWIQSGTVQDNILFGKEMDKTRYEKAIKACALDKDIDDFSHGDLTEIGE 719
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
RG+N+SGGQKQRIQLARAVYNDADIYL DDPFSAVDAHTAA LFN+CVM AL KTVILV
Sbjct: 720 RGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALRDKTVILV 779
Query: 776 THQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQG 835
THQVEFLSEVD ILV+E G++ QSG+Y+ LL +GTAFE LV+AH+ I L
Sbjct: 780 THQVEFLSEVDTILVMEDGKVIQSGSYENLLKSGTAFELLVSAHKVTINDLNQ------- 832
Query: 836 GAEKVEKGRTARPEEPNGIYPRKESSEGEI-SVKGL--TQLTEDEEMEIGDVGWKPFMDY 892
+E + + P++ +G Y K SEGEI S++G QLT++EE IG+VGWKP DY
Sbjct: 833 NSEVL-----SNPQDSHGFYLTKNQSEGEISSIQGSIGAQLTQEEEKVIGNVGWKPLWDY 887
Query: 893 LNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFV 952
+N S G + CL +L Q F+ LQ ++ +WLA AI+IPK+T LIGVYA +S +S FV
Sbjct: 888 INYSNGTLMSCLVILGQCCFLALQTSSNFWLATAIEIPKVTDTTLIGVYALLSISSTSFV 947
Query: 953 YFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFS 1012
Y RS+FAA LGLKAS AFFS FT SIF APMLFFDSTPVGRILTR SSDLSILDFDIP+S
Sbjct: 948 YVRSYFAALLGLKASTAFFSSFTTSIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYS 1007
Query: 1013 IVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAP 1072
+ VA E+L +I ++ VTWQVL+VA+ AMVA+ F+Q+YY ATARELIRINGTTKAP
Sbjct: 1008 LTCVAIVAIEVLVMIFVIASVTWQVLIVAVPAMVALIFIQKYYQATARELIRINGTTKAP 1067
Query: 1073 VMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLT 1132
VMN+ AETS GVVT+RAFNMVDRFF+NYLKLVD DASLFFH+N MEWL+LR+EAL NLT
Sbjct: 1068 VMNFAAETSLGVVTVRAFNMVDRFFKNYLKLVDTDASLFFHSNVAMEWLVLRIEALLNLT 1127
Query: 1133 LFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH 1192
+ TAAL L+L+P+ Y++PG VGLSLSYA TL G Q+F +RW+ L+NYIISVERIKQF+H
Sbjct: 1128 VITAALLLILLPQRYLSPGRVGLSLSYALTLNGAQIFWTRWFSNLSNYIISVERIKQFIH 1187
Query: 1193 IPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRT 1252
IP EPPAIV++ RPPSSWP KG+I+L+ L++RYRPNAPLVLKGITCTF G+RVGVVGRT
Sbjct: 1188 IPAEPPAIVDNNRPPSSWPSKGKIDLQGLEVRYRPNAPLVLKGITCTFKGGSRVGVVGRT 1247
Query: 1253 GSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD 1312
GSGK+TLISALFRLVEP+ G ILIDG++ICSMGLKDLR+KLSIIPQEPTLF+GS+RTNLD
Sbjct: 1248 GSGKSTLISALFRLVEPSRGDILIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLD 1307
Query: 1313 PLGLYSDDEIWKALEKCQLKTTISSLPNKLDSS 1345
PLGLYSDDEIWKA+EKCQLK TIS LP+ LDSS
Sbjct: 1308 PLGLYSDDEIWKAVEKCQLKETISKLPSLLDSS 1340
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526035|ref|XP_003531625.1| PREDICTED: ABC transporter C family member 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1822 bits (4719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 916/1356 (67%), Positives = 1085/1356 (80%), Gaps = 25/1356 (1%)
Query: 1 MAFLGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRI 60
MA+ G ++ S C +FD SFC Q T ID INL+F CVFY S+++ R+N G
Sbjct: 1 MAYFGNIIDDFSGICLKDFDFTSFCSQRTTIDAINLLFICVFYTSMIISLMRRNSQCGSP 60
Query: 61 RRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVK 118
+ I+VS CCA++ I + L NLIAK D+S ++WL VRG IW SLA+SLLV+
Sbjct: 61 SKSRFFILVSICCAIISIVFYSIGLRNLIAKTDNSKQLNWLACIVRGFIWTSLAVSLLVQ 120
Query: 119 RSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFT 178
R KWI++L ++WW +L LNIEIL + I + I+ ++ LLLF AF+N +F
Sbjct: 121 RLKWIKILNSVWWACSCVLASVLNIEILFKKQAIEIFDIIQWFLHFLLLFCAFQNLGYFV 180
Query: 179 SPNREDKSLSEPLLAEK---NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLV 235
S + +SLSEPLL ++ QT LG+A L KLTFSWIN LLSLGYSK L LEDIPSL+
Sbjct: 181 SQSVP-QSLSEPLLDQEVDTKQTGLGRANFLSKLTFSWINSLLSLGYSKSLVLEDIPSLL 239
Query: 236 PEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVV 295
EDEA+ YQ F +AW+SLVRE + N NLV + +LKENI IA ALLRT AV V
Sbjct: 240 SEDEANLGYQNFMHAWESLVRERSKTNTKNLVLWSVVRTHLKENILIAFWALLRTFAVSV 299
Query: 296 GPLLLYAFVNYSNRGE---ENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSA 352
PL+LYAFVNYSN + NL+EGLSIVG LI++KVVES +QRH FF SRRSG+RMRSA
Sbjct: 300 SPLILYAFVNYSNSRDAKNTNLKEGLSIVGFLILSKVVESLSQRHWFFYSRRSGLRMRSA 359
Query: 353 LMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVL 412
LMVAVY+KQLKLSS R++HS GEIVNYIAVDAYRMGEFP+WFH+ W+ LQL L+IG+L
Sbjct: 360 LMVAVYRKQLKLSSSARRRHSAGEIVNYIAVDAYRMGEFPWWFHIAWTSTLQLVLSIGIL 419
Query: 413 FGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQ 472
FGVVG+G LPGLV LICGL+N PFAKILQ C ++FMI+QDERLRSTSEILN+MKIIKLQ
Sbjct: 420 FGVVGVGVLPGLVPLLICGLINFPFAKILQNCMAQFMISQDERLRSTSEILNSMKIIKLQ 479
Query: 473 SWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNA 532
SWE+KFK+L+E+ R KEF WLS+AQ+ KAYG+ +YWMSPTI+S+V+FLGCAL SAPLNA
Sbjct: 480 SWEDKFKNLVENLRAKEFIWLSKAQIMKAYGSFLYWMSPTIVSAVVFLGCALFNSAPLNA 539
Query: 533 STIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSD 592
TIFTVLA LR++GEPVRMIPEALSIMIQVKVSFDR+N LLD EL+ D R ++ +S
Sbjct: 540 GTIFTVLAMLRNLGEPVRMIPEALSIMIQVKVSFDRLNTILLDEELDGSDGNRRNINRSS 599
Query: 593 -RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
+V+IQ GNF WD E PTLR +NL+IKW QK+AVCG VGAGKSSLLYA+LGE+PKIS
Sbjct: 600 INAVEIQAGNFVWDHESVSPTLRDLNLEIKWGQKVAVCGPVGAGKSSLLYAVLGEVPKIS 659
Query: 652 GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
GTVN+ G+IAYVSQTSWIQ G+++DNIL+GKPMDK RY+ AIK CALDKDI +F HGDLT
Sbjct: 660 GTVNVCGTIAYVSQTSWIQGGTVQDNILFGKPMDKTRYENAIKVCALDKDIEDFSHGDLT 719
Query: 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKT 771
EIGQRG+N+SGGQKQRIQLARAVYNDADIYL DDPFSAVDAHTAA LFN+CVM AL +KT
Sbjct: 720 EIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKT 779
Query: 772 VILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDN 831
VILVTHQVEFLSEVD ILV+E G++TQSGNY+ LL AGTAFEQLV AH++AIT LD
Sbjct: 780 VILVTHQVEFLSEVDTILVMEDGKVTQSGNYENLLTAGTAFEQLVRAHKEAIT---ELDQ 836
Query: 832 AGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGL--TQLTEDEEMEIGDVGWKPF 889
+ G K EE G Y K SEGEIS +G QLT++EE +IGDVGWK F
Sbjct: 837 NNEKGTHK---------EESQG-YLTKNQSEGEISTEGKLGVQLTQEEEKQIGDVGWKTF 886
Query: 890 MDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASA 949
DY++ S+G +LC +L QS F+ LQ A+ +WLA AI++PKITS ILIGVYA +S +SA
Sbjct: 887 WDYISFSRGSLMLCWIMLGQSAFIALQTASMFWLALAIEVPKITSAILIGVYALISFSSA 946
Query: 950 VFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDI 1009
FVY RS F AHLGLKAS AFF+ FT +IF APMLFFDSTPVGRILTR SSDLSILDFDI
Sbjct: 947 GFVYVRSLFTAHLGLKASTAFFNSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDI 1006
Query: 1010 PFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTT 1069
P+SI FVA+ G E++ I IM VTW VL+VAI AMVA ++VQ YY A+AREL+RINGTT
Sbjct: 1007 PYSITFVASVGLEIMVTICIMALVTWPVLIVAIPAMVASKYVQGYYQASARELMRINGTT 1066
Query: 1070 KAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQ 1129
KAPVMN+ AETS GVVT+RAFNM + FF+NYLKLVD DA+LFFH+N MEWL+LR+EALQ
Sbjct: 1067 KAPVMNFAAETSLGVVTVRAFNMTEIFFRNYLKLVDTDAALFFHSNVAMEWLVLRIEALQ 1126
Query: 1130 NLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189
NLT+ T+AL L+++P+GYV GLVGLSLSYAF+LTG+Q+F +RWYC L NYIISVERIKQ
Sbjct: 1127 NLTVITSALLLIIVPQGYVTSGLVGLSLSYAFSLTGSQIFWTRWYCNLLNYIISVERIKQ 1186
Query: 1190 FMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVV 1249
F+H+P EPPAI+ED RPPSSWP KGRI+L+ L+IRYRPNAPLVLKGITCTF EG+RVGVV
Sbjct: 1187 FIHLPVEPPAILEDHRPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFKEGSRVGVV 1246
Query: 1250 GRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRT 1309
GRTGSGK+TLISALFRLV+PA G ILIDG++ICS+GLKDLR+KLSIIPQEPTLF+GS+RT
Sbjct: 1247 GRTGSGKSTLISALFRLVDPAKGYILIDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRT 1306
Query: 1310 NLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSS 1345
NLDPLGLYSDDEIW+ALEKCQLK TIS LPN LDSS
Sbjct: 1307 NLDPLGLYSDDEIWEALEKCQLKETISRLPNLLDSS 1342
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528827|ref|XP_003532999.1| PREDICTED: ABC transporter C family member 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1757 bits (4550), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 884/1350 (65%), Positives = 1057/1350 (78%), Gaps = 25/1350 (1%)
Query: 9 GGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRRECVSIV 68
SWTC +FDL S C Q++IID++ L+F VFY SLLV R++ G R+ V +V
Sbjct: 34 ADFSWTCLRDFDLTSLCSQTSIIDILKLLFIAVFYTSLLVSLIRRHSECGSNRKNWVFLV 93
Query: 69 VSACCAVVGIAYL--GYCLWNLIAKNDSSMSWLVSTVRGLIWVSLAISLLVKRSKWIRML 126
VS CCA++ IA+ G LWN SWL ST R +W+SL ISL V+R+KWI+ L
Sbjct: 94 VSVCCALISIAHFCNGLKLWN-------QKSWLASTFRAFVWLSLTISLHVQRNKWIKSL 146
Query: 127 ITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPN--RED 184
++WW S +L ALNIEI+ + +T+ + ++ V+ LLF AF+N +F + ++
Sbjct: 147 NSIWWASSCVLASALNIEIMFKEHTVELFEMVQWLVHFSLLFCAFQNLPYFATSEGIQDT 206
Query: 185 KSLSEPLLA---EKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEAS 241
SLSEPL+A E QT+LG A LL KLTFSW+N LL LGYSKPLALE+IP L+PEDEA+
Sbjct: 207 TSLSEPLIAPRVETKQTQLGHATLLSKLTFSWVNSLLRLGYSKPLALEEIPFLLPEDEAN 266
Query: 242 FAYQKFAYAWDSLVRENNSNNNGN--LVRKVITNVYLKENIFIAICALLRTIAVVVGPLL 299
AYQ F +AW+SL+ ENN+NNN N LV + + KENI IA+ AL+R+I +++ PL+
Sbjct: 267 SAYQDFVHAWESLLSENNNNNNNNKNLVLWSVVRTFSKENILIALYALIRSICMIISPLI 326
Query: 300 LYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQ 359
LYAFVNYSN E +L+EG SI+G +II+KVVES QRH FGSRRSGM++RSALMVAVYQ
Sbjct: 327 LYAFVNYSNSTEADLKEGFSILGFMIISKVVESLCQRHFGFGSRRSGMKIRSALMVAVYQ 386
Query: 360 KQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLG 419
K LKLSS R++HSTGE+VNYIAVDAYR+GEFP+WFH+TW+ A+QL L+I +LFGVVG G
Sbjct: 387 KLLKLSSSARRRHSTGEVVNYIAVDAYRLGEFPWWFHITWTSAVQLVLSIVLLFGVVGAG 446
Query: 420 ALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFK 479
ALPGLV LICG+LNVPFAK++Q QS+FM+AQDERLR+TSEILN+MKIIKLQSWE+KFK
Sbjct: 447 ALPGLVPLLICGVLNVPFAKMIQNSQSQFMMAQDERLRATSEILNSMKIIKLQSWEDKFK 506
Query: 480 SLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVL 539
+L+ S R KEF WLS+AQ+ KAYG+ +YWM+PTI+ SV+F+GC+L SAPLNA IFTVL
Sbjct: 507 NLVLSLRAKEFIWLSKAQIIKAYGSFLYWMTPTIVPSVVFMGCSLFDSAPLNAGIIFTVL 566
Query: 540 ATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN--NDDVRRISLQKSDRSVKI 597
TLR MGEPVR+IPEALSIMIQVKVSFDR+N FLLD EL+ N R I Q S +V+I
Sbjct: 567 TTLRIMGEPVRLIPEALSIMIQVKVSFDRLNTFLLDEELDSINGYGRNIK-QSSVNAVEI 625
Query: 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY 657
Q GNF WD E PTLR VNL+IKW QKIAVCG VGAGKSSLLYA+LGEIPKISGTVN+
Sbjct: 626 QAGNFIWDHESVSPTLRDVNLEIKWGQKIAVCGPVGAGKSSLLYAVLGEIPKISGTVNVG 685
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
G+IAYVSQTSWIQSG++RDNIL+GKPMDK RY+ A K CALD DIN+F HGDLTEIGQRG
Sbjct: 686 GTIAYVSQTSWIQSGTVRDNILFGKPMDKTRYENATKVCALDMDINDFSHGDLTEIGQRG 745
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
+N+SGGQ+QRIQLARAVYNDADIYL DDPFSAVDAHTAA LFN+CVM AL +KTVILVTH
Sbjct: 746 INMSGGQRQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTH 805
Query: 778 QVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGA 837
QVEFL+EVD ILV+EGG++ QSG+Y++LL A TAFEQLV+AH+ +TG+ + +
Sbjct: 806 QVEFLTEVDTILVMEGGKVIQSGSYEDLLTARTAFEQLVSAHKATLTGVDQKNESEIDSD 865
Query: 838 EKVEKGRTARPEEPNGIYPRKESSEGEI--SVKGLTQLTEDEEMEIGDVGWKPFMDYLNV 895
+V PEE K I V T+DEE EIGD+GWKPF DY++
Sbjct: 866 IEV----MVHPEESQSFISLKSKWSRVILPRVNLGHSFTQDEEKEIGDIGWKPFWDYISF 921
Query: 896 SKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFR 955
SKG LLCL + AQ F+ LQ A+TYWLA AI+IPK+TSGILIGV++ S SAVF+Y R
Sbjct: 922 SKGSFLLCLTMSAQFAFIALQTASTYWLALAIEIPKVTSGILIGVFSLFSLLSAVFIYIR 981
Query: 956 SFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015
S AA+LGLKAS AFFS FT++IF APM FFDSTPVGRILTR SSDLSILD DIP+++
Sbjct: 982 SVLAANLGLKASIAFFSSFTSAIFNAPMFFFDSTPVGRILTRASSDLSILDLDIPYTLTL 1041
Query: 1016 VAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMN 1075
VA ++L I +M VTWQVL+VAI A VA ++Q YY A+ARELIRINGTTKAPVMN
Sbjct: 1042 VAFVAADVLVTICVMVSVTWQVLIVAIPATVASIYIQGYYQASARELIRINGTTKAPVMN 1101
Query: 1076 YTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT 1135
+ AETS GVVT+RAFN V+RFF NYLKLVD+DA+LFFH+ MEW ILR+E LQNLT+FT
Sbjct: 1102 FAAETSLGVVTVRAFNTVNRFFNNYLKLVDMDATLFFHSIVTMEWSILRIEVLQNLTVFT 1161
Query: 1136 AALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPP 1195
AAL L+L+P+GYV GLVGLSL+YA TL QVF SR + +N+IISVERI QF+ IP
Sbjct: 1162 AALLLILLPKGYVPSGLVGLSLAYALTLKEAQVFWSRMFSMSSNHIISVERIMQFIEIPA 1221
Query: 1196 EPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSG 1255
EPPAIVED RPPSSWP KGRI+LR L+IRY PNAPLVLKGI CTF EG RVGVVGRTGSG
Sbjct: 1222 EPPAIVEDNRPPSSWPSKGRIDLRALEIRYHPNAPLVLKGINCTFKEGNRVGVVGRTGSG 1281
Query: 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG 1315
KTTLISALFR+VEP+ G ILIDG++ICS+GLKDLR+KLSIIPQEPTLF+GS+RTNLDPLG
Sbjct: 1282 KTTLISALFRIVEPSSGDILIDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLG 1341
Query: 1316 LYSDDEIWKALEKCQLKTTISSLPNKLDSS 1345
LY DDEIWKALEKCQLK TI LP LDSS
Sbjct: 1342 LYDDDEIWKALEKCQLKETIRKLPRLLDSS 1371
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1354 | ||||||
| TAIR|locus:2077750 | 1453 | ABCC10 "ATP-binding cassette C | 0.914 | 0.852 | 0.414 | 4.7e-254 | |
| TAIR|locus:2020235 | 1514 | ABCC5 "ATP-binding cassette C5 | 0.525 | 0.470 | 0.411 | 2e-243 | |
| TAIR|locus:2090029 | 1514 | ABCC3 "ATP-binding cassette C3 | 0.842 | 0.753 | 0.404 | 4.2e-230 | |
| TAIR|locus:2090039 | 1466 | ABCC6 "ATP-binding cassette C6 | 0.905 | 0.836 | 0.382 | 4.8e-229 | |
| TAIR|locus:2090049 | 1493 | ABCC7 "ATP-binding cassette C7 | 0.890 | 0.807 | 0.375 | 3e-220 | |
| TAIR|locus:2081755 | 1539 | ABCC14 "ATP-binding cassette C | 0.544 | 0.478 | 0.351 | 5.9e-220 | |
| TAIR|locus:2043268 | 1516 | ABCC4 "ATP-binding cassette C4 | 0.849 | 0.758 | 0.378 | 1.9e-212 | |
| DICTYBASE|DDB_G0284867 | 1593 | abcC8 "ABC transporter C famil | 0.552 | 0.469 | 0.312 | 6.1e-161 | |
| UNIPROTKB|O15439 | 1325 | ABCC4 "Multidrug resistance-as | 0.845 | 0.864 | 0.316 | 6.3e-156 | |
| UNIPROTKB|E1C6S5 | 1552 | ABCC2 "Uncharacterized protein | 0.442 | 0.385 | 0.338 | 6.9e-156 |
| TAIR|locus:2077750 ABCC10 "ATP-binding cassette C10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2446 (866.1 bits), Expect = 4.7e-254, P = 4.7e-254
Identities = 531/1282 (41%), Positives = 761/1282 (59%)
Query: 85 LWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVKRSKWIRM----LITLWWMSFSLLV 138
+W ++ +N S + WLV ++G W+ + + + V+ ++ IR L++++ + L+
Sbjct: 76 IW-VLRENHSKPLILWLVILIQGFTWLFINLIICVRGTR-IRKSSLRLLSIFSFFYGLVS 133
Query: 139 LALNI-------EILARTYTINVVYIXXXXXXXXXXFSAFR----NFSHFTSP-NREDKS 186
L++ E+ RT ++V+ + + +R S P N D +
Sbjct: 134 SCLSVNNAVFGDELAVRTI-LDVLLLPGSVLLLLSAYKGYRFDESGESSLYEPLNAGDSN 192
Query: 187 -LSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQ 245
SE + ++ KAGL L+F W+N L+ G K L EDIP L E+ A Y
Sbjct: 193 GFSEKADFDNRVSQFAKAGLFSTLSFWWLNSLIKRGNVKDLEEEDIPELRKEERAETCYS 252
Query: 246 KFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVN 305
F R S+ ++++ + V+ +E + A ++ +AV GPLLL AF+
Sbjct: 253 LFEENLIEQKRRLGSSCQPSILKVTVLCVW-RELLTSGFFAFMKIVAVSAGPLLLNAFIL 311
Query: 306 YSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFXXXXXXXXXXXALMVAVYQKQLKLS 365
+ EGL + L +K++ES +QR +F L A+ +KQL+L+
Sbjct: 312 VAEGNASFRYEGLVLAVLLFFSKMIESLSQRQWYFRCRIVGLRVRSLLTAAINKKQLRLN 371
Query: 366 SLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQXXXXXXXXXXXXXXXXXXXXX 425
+ R HS EI+NY VDAYR+GEFP+WFH W+ + Q
Sbjct: 372 NSSRLIHSGSEIMNYATVDAYRIGEFPYWFHQLWTTSFQLLIALGILFHSVGVATFSALA 431
Query: 426 XXXXCGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR 485
L N P AK+ K QSE M +QDERL++ +E L NMK++KL +WE FK +IE
Sbjct: 432 VIILTVLCNAPIAKLQNKFQSELMTSQDERLKACNESLVNMKVLKLYAWESHFKKVIEKL 491
Query: 486 REKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSM 545
R E K L Q+RKAY V++W SP +S+ F C PL AS +FT +ATLR +
Sbjct: 492 RNIELKSLKAVQMRKAYNAVLFWSSPVFVSAATFATCYFL-DIPLRASNVFTFVATLRLV 550
Query: 546 GEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS-VKIQEGNFSW 604
+PVRMIP+ + + IQ KV+F RI FL EL + RR + +++ + I+ +FSW
Sbjct: 551 QDPVRMIPDVIGVTIQAKVAFSRIATFLEAPELQGGERRRKQRSEGNQNAIIIKSASFSW 610
Query: 605 DPELAI-PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYV 663
+ + + P LR V+L++K+ +K+AVCG VG+GKS+LL AILGE P +SGT++ YG+IAYV
Sbjct: 611 EEKGSTKPNLRNVSLEVKFGEKVAVCGEVGSGKSTLLAAILGETPCVSGTIDFYGTIAYV 670
Query: 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
SQT+WIQ+G+IRDNIL+G MD+ RY + I+ +LDKD+ GD TEIG+RG+NLSGG
Sbjct: 671 SQTAWIQTGTIRDNILFGGVMDEHRYRETIQKSSLDKDLELLPDGDQTEIGERGVNLSGG 730
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
QKQRIQLARA+Y DADIYL DDPFSAVDAHTA++LF E VM AL K V+LVTHQV+FL
Sbjct: 731 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFQEYVMDALAGKAVLLVTHQVDFLP 790
Query: 784 EVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKG 843
D +L++ G+IT++ YQELL F+ LVNAHR+ G+E+V
Sbjct: 791 AFDSVLLMSDGEITEADTYQELLARSRDFQDLVNAHRET------------AGSERVVA- 837
Query: 844 RTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLC 903
P +P R SS+ ++ +K ++L + EE E GD G +P++ Y+N +KG
Sbjct: 838 -VENPTKPVKEINRVISSQSKV-LKP-SRLIKQEEREKGDTGLRPYIQYMNQNKGYIFFF 894
Query: 904 LGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLG 963
+ LAQ F Q W+A + P++++ LI VY + S + + RS +
Sbjct: 895 IASLAQVTFAVGQILQNSWMAANVDNPQVSTLKLILVYLLIGLCSVLCLMVRSVCVVIMC 954
Query: 964 LKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023
+K+S + FS NS+F+APM F+DSTP+GRIL+R+SSDLSI+D D+PF ++FV AS
Sbjct: 955 MKSSASLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFVVASSVNT 1014
Query: 1024 LAIIGIMTFVTWQVLVVAIFAMVAVRF-VQRYYIATARELIRINGTTKAPVMNYTAETSQ 1082
+G++ VTWQVL V++ MV + F +Q+YY TA+EL+RINGTT++ V N+ AE+
Sbjct: 1015 GCSLGVLAIVTWQVLFVSV-PMVYLAFRLQKYYFQTAKELMRINGTTRSYVANHLAESVA 1073
Query: 1083 GVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNXXXXXXXXXXVL 1142
G +TIRAF+ +RFF+ L L+D +AS FFH+ EWLI R+E + +L
Sbjct: 1074 GAITIRAFDEEERFFKKSLTLIDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFCMIL 1133
Query: 1143 IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202
+P G + G +G++LSY +L V+ + CYLAN+IISVER+ Q+ H+ PE P ++E
Sbjct: 1134 LPTGTFSSGFIGMALSYGLSLNMGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPEVIE 1193
Query: 1203 DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISA 1262
+ RPP +WP GR+E+ L+IRYR +PLVLKGI+CTF LISA
Sbjct: 1194 ETRPPVNWPVTGRVEISDLQIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLISA 1253
Query: 1263 LFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEI 1322
LFRLVEP GG I++DGVDI +G+ DLR + IIPQ+PTLF G+VR NLDPL +SD EI
Sbjct: 1254 LFRLVEPVGGKIVVDGVDISKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSDAEI 1313
Query: 1323 WKALEKCQLKTTISSLPNKLDS 1344
W+ L KCQLK + N LDS
Sbjct: 1314 WEVLGKCQLKEVVQEKENGLDS 1335
|
|
| TAIR|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1416 (503.5 bits), Expect = 2.0e-243, Sum P(2) = 2.0e-243
Identities = 300/729 (41%), Positives = 431/729 (59%)
Query: 111 LAISLLVKRSKWIRMLITLWW-MSFSLLVLA-------LNIEILARTYTINVVYIXXXXX 162
L + L K S+ + L+ +WW ++FS+ + L IE +R + V +
Sbjct: 129 LVLHLKYKSSEKLPFLVRIWWFLAFSICLCTMYVDGRRLAIEGWSRCSSHVVANLAVTPA 188
Query: 163 XXXXXFSAFRNFSHFTSPNREDKSLSEPLLAEKNQ-----TELGKAGLLRKLTFSWINPL 217
F A+R S R L EPLL E+ T AGL+ +T SW++PL
Sbjct: 189 LGFLCFLAWRGVSGI-QVTRSSSDLQEPLLVEEEAACLKVTPYSTAGLVSLITLSWLDPL 247
Query: 218 LSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLK 277
LS G +PL L+DIP L P D A +Y+ W EN S +L R ++ + + K
Sbjct: 248 LSAGSKRPLELKDIPLLAPRDRAKSSYKVLKSNWKRCKSENPSKPP-SLARAIMKSFW-K 305
Query: 278 ENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRH 337
E A+ A L T+ VGP L+ FV+Y E EG + G +K++E+ T R
Sbjct: 306 EAACNAVFAGLNTLVSYVGPYLISYFVDYLGGKEIFPHEGYVLAGIFFTSKLIETVTTRQ 365
Query: 338 CFFXXXXXXXXXXXALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHL 397
+ AL VY+K LKLSS+ ++ H++GEIVNY+AVD R+G++ ++ H
Sbjct: 366 WYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYMAVDVQRIGDYSWYLHD 425
Query: 398 TWSLALQXXXXXXXXXXXXXXXXXXXXXXXXXCGLLNVPFAKILQKCQSEFMIAQDERLR 457
W L +Q L+ +P AK+ + Q + M A+DER+R
Sbjct: 426 IWMLPMQIVLALAILYKSVGIAAVATLVATIISILVTIPLAKVQEDYQDKLMTAKDERMR 485
Query: 458 STSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSV 517
TSE L NM+++KLQ+WE++++ +E RE+E+ WL +A +A+ T I+W SP +++V
Sbjct: 486 KTSECLRNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKALYSQAFVTFIFWSSPIFVAAV 545
Query: 518 IFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE 577
F G+ L A + + LAT R + EP+R P+ +S+M Q KVS DRI+ FL + E
Sbjct: 546 TFATSIFLGTQ-LTAGGVLSALATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEE 604
Query: 578 LNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637
L D I S+ +++I++G F WDP + PTL G+ + ++ ++AVCG+VG+GKS
Sbjct: 605 LQEDATVVIPRGLSNIAIEIKDGVFCWDPFSSRPTLSGIQMKVEKGMRVAVCGTVGSGKS 664
Query: 638 SLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACA 697
S + ILGEIPKISG V + G+ YVSQ++WIQSG+I +NIL+G PM+K +Y I+AC+
Sbjct: 665 SFISCILGEIPKISGEVRICGTTGYVSQSAWIQSGNIEENILFGSPMEKTKYKNVIQACS 724
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
L KDI F HGD T IG+RG+NLSGGQKQR+QLARA+Y DADIYL DDPFSA+DAHT +
Sbjct: 725 LKKDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDADIYLLDDPFSALDAHTGSD 784
Query: 758 LFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
LF + +++AL +KTV+ VTHQVEFL D ILVL+ G+I QSG Y +LL AGT F+ LV+
Sbjct: 785 LFRDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQSGKYDDLLQAGTDFKALVS 844
Query: 818 AHRDAITGL 826
AH +AI +
Sbjct: 845 AHHEAIEAM 853
|
|
| TAIR|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2220 (786.5 bits), Expect = 4.2e-230, P = 4.2e-230
Identities = 470/1162 (40%), Positives = 688/1162 (59%)
Query: 198 TELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRE 257
T +AG+L LTFSW++PL+ +G K L LED+P L D KF +S
Sbjct: 244 TPYSRAGILSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLES---P 300
Query: 258 NNSNNNGNLVRKVITNVYLK---ENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENL 314
+ +G K+I +Y E + A A + T+A VGP L+ FV Y N +
Sbjct: 301 DGGERSGVTTFKLIKALYFTAQWEILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYN 360
Query: 315 QEGLSIVGCLIITKVVESFTQRHCFFXXXXXXXXXXXALMVAVYQKQLKLSSLGRKKHST 374
EG +V K+VE +QRH FF AL+ +Y+K L LS ++ ++
Sbjct: 361 HEGYVLVITFFAAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTS 420
Query: 375 GEIVNYIAVDAYRMGEFPFWFHLTWSLALQXXXXXXXXXXXXXXXXXXXXXXXXXCGLLN 434
GEI+N++ VDA R+G F ++ H W + LQ L+N
Sbjct: 421 GEIINFMTVDAERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLASIAALVATIIVMLIN 480
Query: 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLS 494
PF ++ ++ Q + M A+D R++STSEIL NM+I+KLQ WE KF S I R+ E WL
Sbjct: 481 FPFGRMQERFQEKLMEAKDSRMKSTSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLK 540
Query: 495 EAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPE 554
+ A + ++W +PT++S F C L G PL + I + LAT R + EP+ +P+
Sbjct: 541 KYVYNSAVISFVFWGAPTLVSVSTFGACILLG-IPLESGKILSALATFRILQEPIYNLPD 599
Query: 555 ALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLR 614
+S+++Q KVS DR+ ++L L D V R+ SD +V++ SWD + PTL+
Sbjct: 600 TISMIVQTKVSLDRLASYLCLDNLQPDIVERLPKGSSDVAVEVINSTLSWDVSSSNPTLK 659
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI 674
+N + K+AVCG+VG+GKSSLL ++LGE+PK+SG++ + G+ AYV+Q+ WIQSG I
Sbjct: 660 DINFKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGKI 719
Query: 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734
DNIL+GKPM++ RYDK ++AC+L KD+ GD T IG+RG+NLSGGQKQRIQ+ARA+
Sbjct: 720 EDNILFGKPMERERYDKVLEACSLSKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 779
Query: 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794
Y DADIYLFDDPFSAVDAHT + LF E ++ L K+VI VTHQVEFL D ILV++ G
Sbjct: 780 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDG 839
Query: 795 QITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGR-TARPEEPNG 853
+I+Q+G Y ++L +GT F +L+ AH++A+ + +D +EK G+ ++
Sbjct: 840 RISQAGKYNDILNSGTDFMELIGAHQEALAVVDSVD--ANSVSEKSALGQENVIVKDAIA 897
Query: 854 IYPRKESSE---GEI-SVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQ 909
+ + ES + ++ SV+ Q+ ++EE E G V + Y+ ++ G +L+ +L Q
Sbjct: 898 VDEKLESQDLKNDKLESVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALVPFILLGQ 957
Query: 910 SGFVGLQAAATYWLAYA------IQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLG 963
F LQ + YW+A+A +Q P S ++I VY ++ S++ + R+ G
Sbjct: 958 VLFQLLQIGSNYWMAWATPVSEDVQAPVKLSTLMI-VYVALAFGSSLCILLRATLLVTAG 1016
Query: 964 LKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023
K + F + IF++PM FFDSTP GRI++R S+D S +D ++P+ VA + +L
Sbjct: 1017 YKTATELFHKMHHCIFRSPMSFFDSTPSGRIMSRASTDQSAVDLELPYQFGSVAITVIQL 1076
Query: 1024 LAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQG 1083
+ IIG+M+ V+W V +V I + A + QRYYIA AREL R+ G KAP++ + +ET G
Sbjct: 1077 IGIIGVMSQVSWLVFLVFIPVVAASIWYQRYYIAAARELSRLVGVCKAPLIQHFSETISG 1136
Query: 1084 VVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNXXXXXXXXXXVLI 1143
TIR+F+ RF + ++L D + F+T G MEWL R++ L + V I
Sbjct: 1137 ATTIRSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVSI 1196
Query: 1144 PRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVED 1203
P G + P L GL+++Y +L Q +L C L N IISVERI Q+ +P EPP ++E
Sbjct: 1197 PTGVIDPSLAGLAVTYGLSLNTLQAWLIWTLCNLENKIISVERILQYASVPSEPPLVIES 1256
Query: 1204 KRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISAL 1263
RP SWP +G +E+R L++RY P+ PLVL+GITCTF LI L
Sbjct: 1257 NRPEQSWPSRGEVEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTL 1316
Query: 1264 FRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIW 1323
FR+VEP+ G I IDGV+I ++GL DLR++LSIIPQ+PT+F G++R+NLDPL Y+DD+IW
Sbjct: 1317 FRIVEPSAGEIRIDGVNILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIW 1376
Query: 1324 KALEKCQLKTTISSLPNKLDSS 1345
+AL+KCQL + KLDSS
Sbjct: 1377 EALDKCQLGDEVRKKEQKLDSS 1398
|
|
| TAIR|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2210 (783.0 bits), Expect = 4.8e-229, P = 4.8e-229
Identities = 482/1260 (38%), Positives = 711/1260 (56%)
Query: 106 LIWVSLAISLLVKRS----KWIRMLITLWWMSF---SLLVLALNIEILARTYTINVVYIX 158
L W S+++ L + + + + L+ +WW+ F S L ++ + + ++V ++
Sbjct: 101 LTWGSISVYLFGRYTNSCEQKVLFLLRVWWVFFFVVSCYHLVVDFVLYKKQEMVSVHFVI 160
Query: 159 XXXXXXXXXFSAFRNFSHFTSPNREDKSLSEPLL--AEKNQTE-----LGKAGLLRKLTF 211
+ L EPLL AE + E KAG+L +++F
Sbjct: 161 SDLVGVCAGLFLCCSCLWKKGEGERIDLLKEPLLSSAESSDNEEVTAPFSKAGILSRMSF 220
Query: 212 SWINPLLSLGYSKPLALEDIPSLVPED--EASFAYQKFAYAWDSLVRENNSNNNGNLVRK 269
SW++PL++LG K + ++D+P L D E+ F + WD R + L++
Sbjct: 221 SWMSPLITLGNEKIIDIKDVPQLDRSDTTESLFWIFRSKLEWDDGERRITTFK---LIKA 277
Query: 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKV 329
+ +V+ ++ + A+ A + T++ V P L+ FV Y N + +G +V + K+
Sbjct: 278 LFLSVW-RDIVLSALLAFVYTVSCYVAPYLMDNFVQYLNGNRQYKNQGYVLVTTFFVAKL 336
Query: 330 VESFTQRHCFFXXXXXXXXXXXALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMG 389
VE TQR FF L+ +Y+K L L ++ H++GEI+N +AVDA R+
Sbjct: 337 VECQTQRQWFFRGQKAGLGMRSVLVSMIYEKGLTLPCHSKQGHTSGEIINLMAVDADRIS 396
Query: 390 EFPFWFHLTWSLALQXXXXXXXXXXXXXXXXXXXXXXXXXCGLLNVPFAKILQKCQSEFM 449
F ++ H W L LQ L N PFAK+ +K QS M
Sbjct: 397 AFSWFMHDPWILVLQVSLALWILYKSLGLGSIAAFPATILVMLANYPFAKLEEKFQSSLM 456
Query: 450 IAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM 509
++D R++ TSE+L NMKI+KLQ WE KF S I R E WL + + + W
Sbjct: 457 KSKDNRMKKTSEVLLNMKILKLQGWEMKFLSKILELRHIEAGWLKKFVYNSSAINSVLWA 516
Query: 510 SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569
+P+ IS+ F C L PL + I LAT R + P+ +PE +S+++Q KVS +RI
Sbjct: 517 APSFISATAFGACLLL-KIPLESGKILAALATFRILQGPIYKLPETISMIVQTKVSLNRI 575
Query: 570 NAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVC 629
+FL +L D V R+ S+ +V+I G FSWD IPTLR +N + +A+C
Sbjct: 576 ASFLCLDDLQQDVVGRLPSGSSEMAVEISNGTFSWDDSSPIPTLRDMNFKVSQGMNVAIC 635
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARY 689
G+VG+GKSSLL +ILGE+PKISG + + G AY++Q+ WIQSG + +NIL+GKPM++ Y
Sbjct: 636 GTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENILFGKPMEREWY 695
Query: 690 DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
D+ ++AC+L+KD+ D T IG+RG+NLSGGQKQRIQ+ARA+Y DADIYLFDDPFSA
Sbjct: 696 DRVLEACSLNKDLEILPFHDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSA 755
Query: 750 VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809
VDAHT + LF E ++ L KTVI VTHQVEFL E D ILV++ G+ITQ+G Y E+L +G
Sbjct: 756 VDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLILVMKDGKITQAGKYHEILDSG 815
Query: 810 TAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKG 869
T F +LV AH +A L +D+ G A EK T ++ N + KE E K
Sbjct: 816 TDFMELVGAHTEA---LATIDSCETGYAS--EKSTT---DKENEVLHHKEKQENGSDNKP 867
Query: 870 LTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI 929
QL ++EE E G VG+ + Y+ ++ G +++ L ++ Q F L + YW+ + +
Sbjct: 868 SGQLVQEEEREKGKVGFTVYKKYMALAYGGAVIPLILVVQVLFQLLSIGSNYWMTWVTPV 927
Query: 930 -----PKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPML 984
P ++ LI VY ++ AS+ + R+ A G K + F+ IF+A M
Sbjct: 928 SKDVEPPVSGFTLILVYVLLAVASSFCILIRALLVAMTGFKMATELFTQMHLRIFRASMS 987
Query: 985 FFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFA 1044
FFD+TP+GRIL R S+D S+ D +P +VA + +L IIG++ V WQVL+V I
Sbjct: 988 FFDATPMGRILNRASTDQSVADLRLPGQFAYVAIAAINILGIIGVIVQVAWQVLIVFIPV 1047
Query: 1045 MVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLV 1104
+ A + ++YYI+ AREL R+ G +++PV+++ +ET G+ TIR+F+ RF + ++L
Sbjct: 1048 VAACAWYRQYYISAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLS 1107
Query: 1105 DIDASLFFHTNGVMEWLILRVEALQNXXXXXXXXXXVLIPRGYVAPGLVGLSLSYAFTLT 1164
D + L FH+ G MEWL R+E L V P G + P L GL+++YA L
Sbjct: 1108 DCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLAGLAITYALNLN 1167
Query: 1165 GTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIR 1224
Q L C L N +ISVER+ Q+ +IP EPP ++E RP SWP +G I + L++R
Sbjct: 1168 TLQATLIWTLCDLENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITICNLQVR 1227
Query: 1225 YRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSILIDGVDICSM 1284
Y P+ P+VL G+TCTF LI LFR+VEPA G I IDG++I S+
Sbjct: 1228 YGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILSI 1287
Query: 1285 GLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS 1344
GL DLR +LSIIPQ+PT+F G++R+NLDPL Y+DD+IW+AL+ CQL + KLDS
Sbjct: 1288 GLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTDDQIWEALDNCQLGDEVRKKELKLDS 1347
|
|
| TAIR|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2127 (753.8 bits), Expect = 3.0e-220, P = 3.0e-220
Identities = 469/1248 (37%), Positives = 697/1248 (55%)
Query: 125 MLITLWWM---SFSLLVLALNIEILARTYTINV-VYIXXXXXXXXXXFSAFRNFSHFTSP 180
+L+ +WW+ FS L ++I + + ++V + + F +
Sbjct: 136 ILLRVWWVLYFMFSCYRLLVDIALYKKQELVSVHLLLSDVLAVSVGLFLCYSCLQKQGQG 195
Query: 181 NREDKSLSEPLL---------------AEKNQ--TELGKAGLLRKLTFSWINPLLSLGYS 223
R + L EPLL AE ++ T AG L ++FSW++PL+ LG
Sbjct: 196 ERINLLLEEPLLNGAESSAATSVQLDKAEDDEVVTPFSNAGFLSHVSFSWMSPLIVLGNE 255
Query: 224 KPLALEDIPSLVPEDEASFAYQKFA--YAWDSLVRENNSNNNGNLVRKVITNVYLKENIF 281
K + ED+P + D A + F WD R + L++ + +V+ ++ +
Sbjct: 256 KIIDSEDVPQVDNSDRAEKLFWIFRSKLEWDDGERRITTYK---LIKALFFSVW-RDILL 311
Query: 282 IAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFX 341
+ A + T++ V P L+ FV Y N + +G+ +V + K+VE +R+ +F
Sbjct: 312 STLFAFVYTVSCYVAPYLMDTFVQYLNGQRQYSNQGVVLVTTFFVAKLVECQARRNWYFR 371
Query: 342 XXXXXXXXXXALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSL 401
L+ +Y+K L L ++ H++GEI+N + VDA R+ F ++ H W L
Sbjct: 372 LQKAGIGMRSVLVSMIYEKGLTLPCYSKQGHTSGEIINLMTVDAERISAFSWYMHDPWIL 431
Query: 402 ALQXXXXXXXXXXXXXXXXXXXXXXXXXCGLLNVPFAKILQKCQSEFMIAQDERLRSTSE 461
LQ L N+P AK+ +K Q M ++D R++ TSE
Sbjct: 432 VLQISLALLILYRSLGLGSIAAFAATFLVMLGNIPLAKLEEKFQGNLMESKDNRMKKTSE 491
Query: 462 ILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLG 521
L NM+I+KLQ WE KF I R E WL + A + + W +P+ +S+ F
Sbjct: 492 ALLNMRILKLQGWEMKFLHKILDLRGIEAGWLKKFVYNSAAISSVLWAAPSFVSATAFGA 551
Query: 522 CALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581
C L PL + I LAT R + P+ +P+ +S+++Q KVS DRI FL +L D
Sbjct: 552 CMLL-KIPLESGKIIAALATFRILQTPIYKLPDTISMIVQTKVSLDRIATFLCLDDLQQD 610
Query: 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLY 641
+ R+ S V++ G FSWD IPTL+ + I IA+CG+VG+GKSSLL
Sbjct: 611 GMERLPSGSSKMDVEVSNGAFSWDDSSPIPTLKDIRFKIPHGMNIAICGTVGSGKSSLLS 670
Query: 642 AILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
+ILGE+PKISG + + G AY++Q+ WIQSG + +NIL+GKPM + Y + ++AC+L+KD
Sbjct: 671 SILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENILFGKPMQREWYQRVLEACSLNKD 730
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ F D T IG+RG+NLSGGQKQRIQ+ARA+Y DADIYLFDDPFSAVDAHT + LF E
Sbjct: 731 LEVFPFRDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 790
Query: 762 CVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRD 821
++ L KTVI VTHQ+EFL E D ILV++ G+ITQ+G Y E+L +GT F +LV AH D
Sbjct: 791 VLLGLLRNKTVIYVTHQLEFLPEADLILVMKDGRITQAGKYNEILESGTDFMELVGAHTD 850
Query: 822 AITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEI 881
A L +D+ +G A + T++ + + ++E E S KG QL ++EE E
Sbjct: 851 A---LAAVDSYEKGSASA--QSTTSKESKVSNDEEKQE--EDLPSPKG--QLVQEEEREK 901
Query: 882 GDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK----ITSG-I 936
G VG+ + Y+ ++ G +L+ + ++ Q F L + YW+A+ + K + SG
Sbjct: 902 GKVGFTVYQKYMKLAYGGALVPIILVVQILFQVLNIGSNYWMAWVTPVSKDVKPLVSGST 961
Query: 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILT 996
LI VY ++TAS+ + R+ +A G K + F+ IF+A M FFD+TP+GRIL
Sbjct: 962 LILVYVFLATASSFCILVRAMLSAMTGFKIATELFNQMHFRIFRASMSFFDATPIGRILN 1021
Query: 997 RLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYI 1056
R S+D S +D +P +A + +L IIG+M V WQVL+V I + A + ++YYI
Sbjct: 1022 RASTDQSAVDLRLPSQFSNLAIAAVNILGIIGVMGQVAWQVLIVFIPVIAACTWYRQYYI 1081
Query: 1057 ATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNG 1116
+ AREL R++G +++P++ + +ET G+ TIR+F+ RF + ++L D + L FH
Sbjct: 1082 SAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYSRLRFHAIS 1141
Query: 1117 VMEWLILRVEALQNXXXXXXXXXXVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176
MEWL R++ L V +P G + P GL+++YA L Q L C
Sbjct: 1142 AMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAGLAVTYALNLNSLQATLIWTLCD 1201
Query: 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGI 1236
L N +ISVER+ Q++ IP EP ++E RP SWP +G I + L++RY P+ P+VL+G+
Sbjct: 1202 LENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRGEITICNLQVRYGPHLPMVLRGL 1261
Query: 1237 TCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
TCTF LI LFR+VEPA G I IDG++I ++GL DLR +LSII
Sbjct: 1262 TCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILTIGLHDLRSRLSII 1321
Query: 1297 PQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS 1344
PQEPT+F G+VR+NLDPL Y+DD+IW+AL+KCQL I KLDS
Sbjct: 1322 PQEPTMFEGTVRSNLDPLEEYADDQIWEALDKCQLGDEIRKKELKLDS 1369
|
|
| TAIR|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1204 (428.9 bits), Expect = 5.9e-220, Sum P(2) = 5.9e-220
Identities = 264/752 (35%), Positives = 409/752 (54%)
Query: 178 TSPNREDKSLSEPLLAEK--NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLV 235
T+ N + S ++ EK N + A + K + W+NPLL GY PL L+ +P+L
Sbjct: 226 TTSNVTAPAKSNDVVVEKSENVSLYASASFISKTFWLWMNPLLRKGYKSPLNLDQVPTLS 285
Query: 236 PEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVV 295
PE A F W + NS N VR + + KE F A+ A++R + V
Sbjct: 286 PEHRAEKLATLFESKWPK--PQENSRNP---VRTTLIRCFWKEIAFTAVLAIIRLSVIYV 340
Query: 296 GPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFXXXXXXXXXXXALMV 355
GP+L+ +FV++++ + +G +V L+I K VE + F L+
Sbjct: 341 GPVLIQSFVDFTSGKRSSPSQGYYLVLILLIAKFVEVLSTHQFNFNSQKLGMLIRSTLIT 400
Query: 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQXXXXXXXXXXX 415
A+Y+K LKL+ R+ H G+IVNY+AVDA ++ + H W + LQ
Sbjct: 401 ALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVAAAIVLLYNT 460
Query: 416 XXXXXXXXXXXXXXCGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWE 475
+ + K + Q M+ +D R+++T+E+LN M++IK Q+WE
Sbjct: 461 LGPSVVTTVIGLTGIFVFILLGTKRNNRYQFSLMMNRDSRMKATNEMLNYMRVIKFQAWE 520
Query: 476 EKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTI 535
+ F I RE EF WLS+ A ++ W +P +IS++ F G L+A T+
Sbjct: 521 DHFNERILKFREMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFTTAVFLG-VKLDAGTV 579
Query: 536 FTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSV 595
FT + + EP+R P+++ + Q +S R++A+++ EL+ + V R + +V
Sbjct: 580 FTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDAYMMSRELSEETVERSQGCDGNVAV 639
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655
+I++G+FSWD E P + +N ++K + A+ G+VG+GKSSLL ++LGE+ K+SG V
Sbjct: 640 EIKDGSFSWDDEDDEPAIENINFEVKKGELAAIVGTVGSGKSSLLASVLGEMHKLSGKVR 699
Query: 656 LYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
+ G+ AYV+QTSWIQ+G+++DNIL+G PM++++Y++ +K C L+KD+ + GD TEIG+
Sbjct: 700 VCGTTAYVAQTSWIQNGTVQDNILFGLPMNRSKYNEVLKVCCLEKDMQIMEFGDQTEIGE 759
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
RG+NLSGGQKQRIQLARAVY ++D+YL DD FSAVDAHT + +F +CV AL+ KT++LV
Sbjct: 760 RGINLSGGQKQRIQLARAVYQESDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTILLV 819
Query: 776 THQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAI----TGLGPLDN 831
THQV+FL VDRILV+ G I QSG Y EL+ +G F +LV AH ++ G
Sbjct: 820 THQVDFLHNVDRILVMRDGMIVQSGKYDELVSSGLDFGELVAAHETSMELVEAGSASATA 879
Query: 832 AGQGGAEKVEKGRTA--RPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPF 889
A A + + + P +P + +S V T + E+ D K F
Sbjct: 880 ANVPMASPITQRSISIESPRQPKSPKVHRTTSMESPRVLRTTSMESPRLSELNDESIKSF 939
Query: 890 MDYLNVSKGMSLLCLGVLAQSGFVGLQAAATY 921
+ N+ + S L + G V Q Y
Sbjct: 940 LGS-NIPEDGSRLIKEEEREVGQVSFQVYKLY 970
|
|
| TAIR|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2038 (722.5 bits), Expect = 1.9e-212, Sum P(2) = 1.9e-212
Identities = 444/1172 (37%), Positives = 659/1172 (56%)
Query: 188 SEPLLAEK--NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQ 245
S+ + EK N + A + K + W+NPLLS GY PL LE +P+L PE +A
Sbjct: 238 SDAVSVEKSDNVSLYASASVFSKTFWLWMNPLLSKGYKSPLTLEQVPTLSPEHKAERLAL 297
Query: 246 KFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVN 305
F +W S N+ + +R + + KE +F AI A++R + VGP+L+ +FV+
Sbjct: 298 LFESSWPK-----PSENSSHPIRTTLLRCFWKEILFTAILAIVRLGVMYVGPVLIQSFVD 352
Query: 306 YSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFXXXXXXXXXXXALMVAVYQKQLKLS 365
+++ + +G +V L++ K VE T F L+ A+Y+K LKL+
Sbjct: 353 FTSGKRSSPWQGYYLVLILLVAKFVEVLTTHQFNFDSQKLGMLIRSTLITALYKKGLKLT 412
Query: 366 SLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQXXXXXXXXXXXXXXXXXXXXX 425
R+ H G+IVNY+AVDA ++ + H W + LQ
Sbjct: 413 GSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVTVALVLLYGSLGASVITAVI 472
Query: 426 XXXXCGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR 485
+ + + Q M +D R+++T+E+LN M++IK Q+WE F I
Sbjct: 473 GLTGVFVFILLGTQRNNGYQFSLMGNRDSRMKATNEMLNYMRVIKFQAWENHFNKRILKF 532
Query: 486 REKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSM 545
R+ EF WLS+ A ++ W +P +IS++ F AL L+A T+FT + +
Sbjct: 533 RDMEFGWLSKFLYSIAGNIIVLWSTPVLISALTF-ATALALGVKLDAGTVFTTTTIFKIL 591
Query: 546 GEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWD 605
EP+R P+++ + Q +S R++++++ EL+ D V R + +V++++G+FSWD
Sbjct: 592 QEPIRTFPQSMISLSQAMISLGRLDSYMMSKELSEDAVERALGCDGNTAVEVRDGSFSWD 651
Query: 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ 665
E P L +N +K + A+ G+VG+GKSSLL ++LGE+ +ISG V + GS YV+Q
Sbjct: 652 DEDNEPALSDINFKVKKGELTAIVGTVGSGKSSLLASVLGEMHRISGQVRVCGSTGYVAQ 711
Query: 666 TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725
TSWI++G+++DNIL+G PM + +Y+K + C+L+KD+ + GD TEIG+RG+NLSGGQK
Sbjct: 712 TSWIENGTVQDNILFGLPMVREKYNKVLNVCSLEKDLQMMEFGDKTEIGERGINLSGGQK 771
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV 785
QRIQLARAVY + D+YL DD FSAVDAHT + +F +CV AL+ KTV+LVTHQV+FL V
Sbjct: 772 QRIQLARAVYQECDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTVLLVTHQVDFLHNV 831
Query: 786 DRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGL-GPLDNAGQGGAEKVEKG- 843
D ILV+ G+I +SG Y EL+ +G F +LV AH ++ + D+A + +
Sbjct: 832 DCILVMRDGKIVESGKYDELVSSGLDFGELVAAHETSMELVEAGADSAAVATSPRTPTSP 891
Query: 844 RTARP----EEPNGIYPRKE---SSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVS 896
+ P E P+ E S G V+ ++L ++EE E G V + Y +
Sbjct: 892 HASSPRTSMESPHLSDLNDEHIKSFLGSHIVEDGSKLIKEEERETGQVSLGVYKQYCTEA 951
Query: 897 KGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITS---GILIGVYAGVSTASAVFVY 953
G + L + + G A+ YWLAY S + I Y ++ S V V
Sbjct: 952 YGWWGIVLVLFFSLTWQGSLMASDYWLAYETSAKNAISFDASVFILGYVIIALVSIVLVS 1011
Query: 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSI 1013
RS++ HLGLK ++ FF NSI APM FFD+TP GRIL+R S+D + +D IPF +
Sbjct: 1012 IRSYYVTHLGLKTAQIFFRQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDILIPFML 1071
Query: 1014 VFVAASGTELLAIIGIMTFVTWQVLVVAI-FAMVAVRFVQRYYIATARELIRINGTTKAP 1072
V + T LL+I + W I + + + + YY+A++REL R++ TKAP
Sbjct: 1072 GLVVSMYTTLLSIFIVTCQYAWPTAFFVIPLGWLNIWY-RNYYLASSRELTRMDSITKAP 1130
Query: 1073 VMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNXX 1132
++++ +E+ GV+TIR+F + F Q +K V+ + + FH NG EWL R+E + +
Sbjct: 1131 IIHHFSESIAGVMTIRSFRKQELFRQENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWV 1190
Query: 1133 XXXXXXXXVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH 1192
VL+P + P VGLSLSY +L F C++ N ++SVERIKQF
Sbjct: 1191 LCISALFMVLLPSNVIRPENVGLSLSYGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTD 1250
Query: 1193 IPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXX 1252
IP E ++ PPS+WPF G + L LK+RYRPN PLVLKGIT
Sbjct: 1251 IPSESEWERKETLPPSNWPFHGNVHLEDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRT 1310
Query: 1253 XXXXXXLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD 1312
LI LFRLVEP+GG I+IDG+DI ++GL DLR + IIPQEP LF G+VR+N+D
Sbjct: 1311 GSGKSTLIQVLFRLVEPSGGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNID 1370
Query: 1313 PLGLYSDDEIWKALEKCQLKTTISSLPNKLDS 1344
P YSD+EIWK+LE+CQLK +++ P KLDS
Sbjct: 1371 PTEQYSDEEIWKSLERCQLKDVVATKPEKLDS 1402
|
|
| DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 950 (339.5 bits), Expect = 6.1e-161, Sum P(2) = 6.1e-161
Identities = 243/778 (31%), Positives = 394/778 (50%)
Query: 99 LVSTVRGLIW-VSLAISLL-VKRSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVY 156
L S V + W VSL + L +K+ + I L+W+ F+ V + + RT T+ +
Sbjct: 103 LYSVVTVVQWTVSLGLVYLEMKKGQSRSWEIRLYWV-FAFFVATVKL----RTLTLAIAG 157
Query: 157 IXXXXXXXXXXFSAFRNFS-----HFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTF 211
FS F + TS D S L E ++ A L +LTF
Sbjct: 158 KSIYNVGFLEYFSYFVGYCLILILSITSVLFFDNLESYQNLEENEISKEVNANLFSRLTF 217
Query: 212 SWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVI 271
WIN +L G+ K L + D+P+L D++ +KF AW+ +++ N + L +
Sbjct: 218 WWINSVLVKGHKKALEISDVPTLGEIDQSILLSEKFEKAWEEQLKKPNPSLPWALAKAFG 277
Query: 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNY--SNRGEENLQEGLSIVGCLIITKV 329
+ Y+ A+ +++ + + VGP LL + + S G ++ +GL + V
Sbjct: 278 PHFYIA-----ALFKIIQDLLIFVGPTLLKRVLGFVESRDGSQDTYDGLIYALLYFLAPV 332
Query: 330 VESFTQRHCFFXXXXXXXXXXXALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMG 389
V+S F A++ AVY+K LK +SL R+ + GEIVN ++VDA +
Sbjct: 333 VQSLLLHQYFHRCYRVGMWLRSAVVTAVYKKALK-TSL-REGTTIGEIVNLMSVDAQKFM 390
Query: 390 EFPFWFHLTWSLALQXXXXXXXXXXXXXXXXXXXXXXXXXCGLLNVPFAKILQKCQSEFM 449
+ + H+ WS LQ +N+ + + +K Q+ M
Sbjct: 391 DLCPYLHMIWSAPLQLAISLVLLYRILNASVFAGLGIMLVMIPINLAISNLAKKRQTISM 450
Query: 450 IAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM 509
+D R ++ +E+LN +K+IKL SWE+ F + R KE + + + + +++ M
Sbjct: 451 KLKDRRTKAVNEVLNGIKVIKLYSWEQSFMDHVNEIRNKELDVMKAIKYIQGFSLLLWSM 510
Query: 510 SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569
SP +S F LTG L+A+ F L+ M P+ M+P +S +I+ VS R+
Sbjct: 511 SPVFVSVSTFTVYILTGQV-LSATQAFPALSLFNVMQFPINMLPSVVSSIIEASVSVARL 569
Query: 570 NAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVC 629
FLL +L+ + V + + +VKI W+P P L +NL IK + +A+
Sbjct: 570 QKFLLKKDLDPNVVEH-HINEPGIAVKIDNATLEWEPNK--PILHDINLTIKKGELVAIV 626
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARY 689
G VG+GKSS++ +++G++ K GTV + GS+A VSQ +WIQ+ ++++NIL+ K +++ +Y
Sbjct: 627 GQVGSGKSSIVSSLVGDLDKTKGTVAVNGSVALVSQQAWIQNATLKNNILFAKELNQDKY 686
Query: 690 DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
++AC L+ DI GD TEIG++G+NLSGGQKQR+ +ARAVYN+ADIY+FDDP SA
Sbjct: 687 QSVVQACCLEPDIKILPGGDQTEIGEKGINLSGGQKQRVSIARAVYNNADIYIFDDPLSA 746
Query: 750 VDAHTAATLFNECVM---AALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
VDAH +F + L KT ILVTH V +L VDRI++++ G+I + G++ L+
Sbjct: 747 VDAHVGKAIFKNVLSNQDGILCNKTRILVTHAVHYLPYVDRIILMKDGRIVEEGDFNTLI 806
Query: 807 LAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGE 864
AG+ F +L++ H + L + + G E N + E EGE
Sbjct: 807 EAGSHFTELMS-HDEQQQQLQQQQAPDKSSDSNEQIGGGDNKESENN-EEQNEEEEGE 862
|
|
| UNIPROTKB|O15439 ABCC4 "Multidrug resistance-associated protein 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1520 (540.1 bits), Expect = 6.3e-156, P = 6.3e-156
Identities = 377/1192 (31%), Positives = 605/1192 (50%)
Query: 190 PLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAY 249
P+ E L A L ++ F W+NPL +G+ + L +D+ S++PED + ++
Sbjct: 3 PVYQEVKPNPLQDANLCSRVFFWWLNPLFKIGHKRRLEEDDMYSVLPEDRSQHLGEELQG 62
Query: 250 AWDS-LVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN 308
WD ++R N +L R +I Y K + + I L+ A V+ P+ L +NY
Sbjct: 63 FWDKEVLRAENDAQKPSLTRAII-KCYWKSYLVLGIFTLIEESAKVIQPIFLGKIINYFE 121
Query: 309 RGEEN----LQEGLSIVGCLIITKVVESFTQRHCFFXXXXXXXXXXXALMVAVYQKQLKL 364
+ L + L ++ + F+ A+ +Y+K L+L
Sbjct: 122 NYDPMDSVALNTAYAYATVLTFCTLILAILHHLYFYHVQCAGMRLRVAMCHMIYRKALRL 181
Query: 365 SSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQXXXXXXXXXXXXXXXXXXXX 424
S++ K +TG+IVN ++ D + + + H W+ LQ
Sbjct: 182 SNMAMGKTTTGQIVNLLSNDVNKFDQVTVFLHFLWAGPLQAIAVTALLWMEIGISCLAGM 241
Query: 425 XXXXXCGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES 484
L F K+ +S+ D R+R+ +E++ ++IIK+ +WE+ F +LI +
Sbjct: 242 AVLIILLPLQSCFGKLFSSLRSKTATFTDARIRTMNEVITGIRIIKMYAWEKSFSNLITN 301
Query: 485 RREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRS 544
R+KE + + + ++ + II V F L GS + AS +F + +
Sbjct: 302 LRKKEISKILRSSCLRGMNLASFFSASKIIVFVTFTTYVLLGSV-ITASRVFVAVTLYGA 360
Query: 545 MGEPVRMI-PEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFS 603
+ V + P A+ + + VS RI FLL E++ + R++ + V +Q+
Sbjct: 361 VRLTVTLFFPSAIERVSEAIVSIRRIQTFLLLDEISQRN-RQLP-SDGKKMVHVQDFTAF 418
Query: 604 WDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYV 663
WD PTL+G++ ++ + +AV G VGAGKSSLL A+LGE+ G V+++G IAYV
Sbjct: 419 WDKASETPTLQGLSFTVRPGELLAVVGPVGAGKSSLLSAVLGELAPSHGLVSVHGRIAYV 478
Query: 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
SQ W+ SG++R NIL+GK +K RY+K IKACAL KD+ + GDLT IG RG LSGG
Sbjct: 479 SQQPWVFSGTLRSNILFGKKYEKERYEKVIKACALKKDLQLLEDGDLTVIGDRGTTLSGG 538
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
QK R+ LARAVY DADIYL DDP SAVDA + LF C+ L +K ILVTHQ+++L
Sbjct: 539 QKARVNLARAVYQDADIYLLDDPLSAVDAEVSRHLFELCICQILHEKITILVTHQLQYLK 598
Query: 784 EVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN-----AHRDAITGLGPLDNAGQGGAE 838
+IL+L+ G++ Q G Y E L +G F L+ + + + G L N
Sbjct: 599 AASQILILKDGKMVQKGTYTEFLKSGIDFGSLLKKDNEESEQPPVPGTPTLRNR-TFSES 657
Query: 839 KVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKG 898
V +++RP +G ES + E +V +T L+E+ E G VG++ + +Y
Sbjct: 658 SVWSQQSSRPSLKDGAL---ESQDTE-NVP-VT-LSEENRSE-GKVGFQAYKNYFRAGAH 710
Query: 899 ----MSLLCLGVLAQSGFVGLQAAATYW------LAYAIQ-----IPKITSGILIGVYAG 943
+ L+ L AQ +V +YW L + K+ +G+Y+G
Sbjct: 711 WIVFIFLILLNTAAQVAYVLQDWWLSYWANKQSMLNVTVNGGGNVTEKLDLNWYLGIYSG 770
Query: 944 VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLS 1003
++ A+ +F RS ++ + +S+ + SI KAP+LFFD P+GRIL R S D+
Sbjct: 771 LTVATVLFGIARSLLVFYVLVNSSQTLHNKMFESILKAPVLFFDRNPIGRILNRFSKDIG 830
Query: 1004 ILDFDIPFSIVFVAASGTELLAIIGI-MTFVTWQVLVVAIFAMVAVRFVQRYYIATAREL 1062
LD +P + + + +++ ++ + + + W + + ++ + F++RY++ T+R++
Sbjct: 831 HLDDLLPLTFLDFIQTLLQVVGVVSVAVAVIPWIAIPLVPLGIIFI-FLRRYFLETSRDV 889
Query: 1063 IRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLI 1122
R+ TT++PV ++ + + QG+ TIRA+ +R + + D+ + +F W
Sbjct: 890 KRLESTTRSPVFSHLSSSLQGLWTIRAYKAEERCQELFDAHQDLHSEAWFLFLTTSRWFA 949
Query: 1123 LRVEALQNXXXXXXXXXXVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYII 1182
+R++A+ +++ + A G VGL+LSYA TL G + R + N +I
Sbjct: 950 VRLDAICAMFVIIVAFGSLILAKTLDA-GQVGLALSYALTLMGMFQWCVRQSAEVENMMI 1008
Query: 1183 SVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSE 1242
SVER+ ++ + E P + KRPP +WP +G I + Y P PLVLK +T
Sbjct: 1009 SVERVIEYTDLEKEAPWEYQ-KRPPPAWPHEGVIIFDNVNFMYSPGGPLVLKHLTALIKS 1067
Query: 1243 XXXXXXXXXXXXXXXXLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302
LISALFRL EP G I ID + +GL DLR K+SIIPQEP L
Sbjct: 1068 QEKVGIVGRTGAGKSSLISALFRLSEPEG-KIWIDKILTTEIGLHDLRKKMSIIPQEPVL 1126
Query: 1303 FRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFS 1350
F G++R NLDP ++D+E+W AL++ QLK TI LP K+D+ SG FS
Sbjct: 1127 FTGTMRKNLDPFNEHTDEELWNALQEVQLKETIEDLPGKMDTELAESGSNFS 1178
|
|
| UNIPROTKB|E1C6S5 ABCC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 855 (306.0 bits), Expect = 6.9e-156, Sum P(4) = 6.9e-156
Identities = 206/609 (33%), Positives = 316/609 (51%)
Query: 269 KVITNVYLKENIFIAIC-ALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIIT 327
K + +L +N+ +++ L+ + V V P LL + + + E +G L +T
Sbjct: 331 KALFRTFL-QNLMMSVAFKLVHDVLVFVSPQLLKLLITFVSDAEAFAWQGYLYSILLFLT 389
Query: 328 KVVESFTQRHCFFXXXXXXXXXXXALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYR 387
+++S + F +L+ A+Y+K L +SS RK+ + GE VN ++ DA R
Sbjct: 390 AMLQSLCLQQYFNLCFQLGTNVRASLIAAIYKKALTMSSATRKESTVGETVNLMSADAQR 449
Query: 388 MGEFPFWFHLTWSLALQXXXXXXXXXXXXXXXXXXXXXXXXXCGLLNVPFAKILQKCQSE 447
+ + H WS LQ +N + Q
Sbjct: 450 FMDMANFVHQLWSSPLQIILSIVFLWGELGPSVLAGLAVMVLLIPINGFLVNKSKHIQVR 509
Query: 448 FMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIY 507
M +DER++ E+LN +KI+KL +WE F+ I R E K L + ++ ++
Sbjct: 510 NMKNKDERMKIMGEVLNGIKILKLFAWEPSFEKRINEIRACELKDLLKFSYLQSVSIFVF 569
Query: 508 WMSPTIISSVIFLGCALTG-SAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSF 566
+P ++S F L + L+A FT ++ + P+ M+P LS M+Q VS
Sbjct: 570 TCAPFLVSLASFAVYVLVDENNVLDAQKAFTSISLFNVLRFPMAMLPLVLSSMVQTNVSK 629
Query: 567 DRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKI 626
+R+ +L +L+ + S+ S +V+ E F+W+ + +R V LDIK +
Sbjct: 630 ERLERYLGGEDLDTSAIHHDSIPGS--AVRFTEATFTWEHD-GNAVIRDVTLDIKPGSLV 686
Query: 627 AVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDK 686
AV G+VG+GKSSL+ A+LGE+ I G +N+ GS+AYV Q +WIQ+ +++DNIL+G +D+
Sbjct: 687 AVVGAVGSGKSSLISAMLGEMENIKGHINIQGSLAYVPQQAWIQNATLKDNILFGSELDE 746
Query: 687 ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746
ARY K IKACAL D+ GD TEIG++G+NLSGGQKQR+ LARAVYNDADIY+ DDP
Sbjct: 747 ARYQKVIKACALLPDLELLPAGDQTEIGEKGINLSGGQKQRVSLARAVYNDADIYILDDP 806
Query: 747 FSAVDAHTAATLFNECV--MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQE 804
SAVDAH LF + L+KKT ILVTH + FL +VD I+VL G +++ G+Y
Sbjct: 807 LSAVDAHVGKHLFEHVLGPKGLLQKKTQILVTHSISFLPQVDNIVVLVAGAVSEHGSYST 866
Query: 805 LLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEE-PNGIYPRKESSEG 863
LL AF Q +N++ G + G E+ ++ EE P+ + E
Sbjct: 867 LLANRGAFAQFLNSYGSQEEGAAE-ETTADGIEEQGDESMEPCVEEGPDDVVTMTLKREA 925
Query: 864 EISVKGLTQ 872
I K T+
Sbjct: 926 SIHRKEFTR 934
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8LGU1 | AB8C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.6498 | 0.9859 | 0.9118 | yes | no |
| P39109 | YCFI_YEAST | No assigned EC number | 0.3081 | 0.9623 | 0.8600 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00034196001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (1456 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00002277001 | SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (129 aa) | • | 0.481 | |||||||
 | GSVIVG00002276001 | SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (81 aa) | • | 0.481 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1354 | |||
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-119 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-107 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-76 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-66 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-65 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 5e-61 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-57 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-53 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-52 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-50 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 5e-47 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-43 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-41 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-41 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-40 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-40 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-40 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 7e-39 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-38 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-38 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-37 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-37 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-36 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 7e-36 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-35 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-34 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 6e-34 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-32 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 9e-32 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-31 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-31 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 4e-30 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-30 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-29 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 7e-29 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-28 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-28 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-28 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-28 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-28 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-28 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 9e-28 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-27 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-27 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 5e-27 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-26 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-26 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-26 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-26 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-26 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-26 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 8e-26 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 8e-26 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-25 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-25 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-25 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-25 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-25 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-24 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-24 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-24 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 6e-24 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 8e-24 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-23 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-23 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-22 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-22 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-22 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-22 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 3e-22 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-22 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-22 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-22 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 6e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-22 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-21 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-21 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-21 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-21 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-21 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 5e-21 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 7e-21 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-20 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-20 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-20 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-20 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 8e-20 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-19 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-19 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-19 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-19 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-19 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-19 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 8e-19 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-18 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-18 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-18 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-18 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-18 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-18 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-18 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-18 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-18 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-18 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-17 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-17 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-17 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-17 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-17 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 5e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-17 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-17 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-17 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 9e-17 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-16 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-16 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-16 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-16 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-16 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 3e-16 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-16 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-16 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-16 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-16 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 6e-16 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 6e-16 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-16 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-16 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 7e-16 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-15 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-15 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-15 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-15 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-15 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-15 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-15 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-15 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-15 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-15 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-15 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-15 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 5e-15 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-15 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 6e-15 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 7e-15 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 7e-15 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 8e-15 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 9e-15 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 9e-15 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-14 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-14 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-14 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-14 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-14 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-14 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-14 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-14 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 4e-14 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-14 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-14 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-14 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-14 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-14 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-14 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 6e-14 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-14 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 9e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-13 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-13 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-13 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-13 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-13 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-13 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-13 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-13 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-13 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-13 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 3e-13 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-13 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-13 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-13 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 9e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-12 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-12 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-12 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-12 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-12 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-12 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-12 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-12 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-12 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-12 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-12 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-12 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 4e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 5e-12 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 6e-12 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-12 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 7e-12 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-12 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 8e-12 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 9e-12 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 9e-12 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-11 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-11 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-11 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-11 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-11 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-11 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-11 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-11 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-11 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 3e-11 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-11 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-11 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-11 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-11 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-11 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-11 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 5e-11 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-11 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 5e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-11 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-11 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 7e-11 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 7e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-11 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 8e-11 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 8e-11 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-10 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-10 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-10 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-10 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-10 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-10 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-10 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-10 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-10 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-10 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-10 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-10 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-10 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-10 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-10 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-10 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-10 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-10 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 5e-10 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-10 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 6e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 7e-10 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 7e-10 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 8e-10 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 9e-10 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 9e-10 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 9e-10 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 9e-10 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-09 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-09 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-09 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-09 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-09 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-09 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-09 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-09 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-09 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-09 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-09 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-09 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-09 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-09 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-09 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-09 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-09 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 5e-09 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 5e-09 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 7e-09 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 7e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 9e-09 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 9e-09 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-08 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-08 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-08 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-08 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-08 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-08 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-08 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-08 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-08 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-08 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-08 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-08 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 6e-08 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 7e-08 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-08 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 7e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 8e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 9e-08 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-07 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-07 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 1e-07 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-07 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-07 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-07 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-07 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-07 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-07 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-07 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-07 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-07 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-07 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-07 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-07 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 6e-07 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 6e-07 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 6e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-07 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-07 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 8e-07 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 9e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 9e-07 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 9e-07 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 9e-07 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-06 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-06 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-06 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-06 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-06 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-06 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 3e-06 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-06 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-06 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-06 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 4e-06 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-06 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 5e-06 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-06 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-06 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-06 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 8e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 8e-06 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 9e-06 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 9e-06 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-05 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-05 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-05 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-05 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-05 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-05 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-05 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-05 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-05 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 3e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-05 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 4e-05 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-05 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 4e-05 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-05 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 5e-05 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-05 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 6e-05 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 6e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 7e-05 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 7e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 7e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 8e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-05 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 8e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 9e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 9e-05 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 9e-05 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-04 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-04 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-04 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-04 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-04 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-04 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-04 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-04 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-04 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-04 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 3e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 3e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 4e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-04 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 5e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 6e-04 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-04 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 6e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 6e-04 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 7e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 8e-04 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 9e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 9e-04 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 0.001 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 0.001 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 0.001 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 0.001 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 0.001 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.001 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 0.001 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 0.001 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 0.001 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 0.002 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 0.002 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 0.002 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 0.002 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 0.002 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.002 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.002 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.002 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.002 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.002 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.002 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 0.002 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 0.002 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.002 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 0.003 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 0.003 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 0.003 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 0.003 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 0.003 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 0.003 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 0.003 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 0.004 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 0.004 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.004 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.004 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 0.004 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 0.004 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 691 bits (1785), Expect = 0.0
Identities = 431/1356 (31%), Positives = 690/1356 (50%), Gaps = 107/1356 (7%)
Query: 75 VVGIAYLGYCLWNLIAKNDSSMSWLVS-TVRGLIWVSLAISLLVKRSKWIR---MLITLW 130
+V A L Y W + +LVS T+ G+ + + ++R K ++ +++T W
Sbjct: 77 IVCWADLFYSFWERSHGRAPAPVFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFW 136
Query: 131 WMSF--------SLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPNR 182
++ S ++LAL + + + YI V L+ S F + S S
Sbjct: 137 LVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFALVLSQLVLSCFSDKSPLFSETN 196
Query: 183 EDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASF 242
D N A L ++TF WI + GY +PL D+ SL ED +
Sbjct: 197 HDP----------NPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEM 246
Query: 243 AYQKFAYAW-------------------DSLVRENNSNNNGN------LVR--------- 268
W D + +S + N +V+
Sbjct: 247 VVPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPS 306
Query: 269 --KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLII 326
KV+ + + + + + +GP +L + + N +G G L +
Sbjct: 307 LFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFV 366
Query: 327 TKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAY 386
+++ F SGMR+++A+M AVY+K L +++ RK + GEIVN ++VDA
Sbjct: 367 CACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQ 426
Query: 387 RMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQS 446
R + + ++ WS LQ+ LA+ L+ +G L G+ + ++ LN A + Q
Sbjct: 427 RFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQV 486
Query: 447 EFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVI 506
M ++D R++ +EILN +K++KL +WE F +E R++E K L ++ A GT
Sbjct: 487 AHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFT 546
Query: 507 YWMSPTIISSVIF-LGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVS 565
+ +P +++ + F + + + L+A F LA + P+ ++P +S ++Q VS
Sbjct: 547 WVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVS 606
Query: 566 FDRINAFLLDHELNNDDVRRISLQKSD-RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQ 624
R+ FL EL D + R +++ + S+ + F+W +L PTL G+ I
Sbjct: 607 LKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLP-PTLNGITFSIPEGA 665
Query: 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPM 684
+AV G VG GKSSLL A+L E+ K+ G V++ GS+AYV Q +WIQ+ S+R+NIL+GK +
Sbjct: 666 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKAL 725
Query: 685 DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
++ Y + ++ACAL D+ GD TEIG++G+NLSGGQKQR+ LARAVY++ADIYLFD
Sbjct: 726 NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD 785
Query: 745 DPFSAVDAHTAATLFNECV--MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802
DP SAVDAH +F + L+ KT ILVTH + +L +VD I+V+ GG+I++ G+Y
Sbjct: 786 DPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSY 845
Query: 803 QELLLAGTAFEQLVNAHRDAITGLGPLDN--AGQGGAEK----VEKG------------- 843
QELL AF + + + D+ A G K +E G
Sbjct: 846 QELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQR 905
Query: 844 RTARPEEPNGIYPRKESSEGEISVKGLTQ----LTEDEEMEIGDVGWKPFMDYLNVSKGM 899
+ + +G R S E+ + L E ++ + G V + DY+
Sbjct: 906 QLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIG-- 963
Query: 900 SLLCLGVLAQSGFVGLQAAA---TYWLAYAIQIPKITS-----GILIGVYA--GVSTASA 949
L + L+ FV +A YWL+ P + + + VY G+ A
Sbjct: 964 --LFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFA 1021
Query: 950 VFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDI 1009
VF Y S + G++AS+ ++ ++PM FF+ TP G ++ R S +L +D I
Sbjct: 1022 VFGY--SMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMI 1079
Query: 1010 PFSI-VFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGT 1068
P I +F+ + + A+I I+ +++ ++ FVQR+Y+A++R+L R+
Sbjct: 1080 PPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYF-FVQRFYVASSRQLKRLESV 1138
Query: 1069 TKAPVMNYTAETSQGVVTIRAFNMVDRF-FQNYLKLVDIDASLFFHTNGVMEWLILRVEA 1127
+++PV ++ ET GV IRAF +RF Q+ LK VD + ++ + WL +R+E
Sbjct: 1139 SRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLK-VDENQKAYYPSIVANRWLAVRLEC 1197
Query: 1128 LQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERI 1187
+ N + AALF V I R ++ GLVGLS+SY+ +T +L R + I++VER+
Sbjct: 1198 VGNCIVLFAALFAV-ISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERL 1256
Query: 1188 KQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVG 1247
K++ E P +++ PPS WP +GR+E R +RYR + LVL+ I T G +VG
Sbjct: 1257 KEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVG 1316
Query: 1248 VVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSV 1307
+VGRTG+GK++L LFR+ E A G I+IDG++I +GL DLR K++IIPQ+P LF GS+
Sbjct: 1317 IVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSL 1376
Query: 1308 RTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLD 1343
R NLDP YSD+E+W ALE LKT +S+LP+KLD
Sbjct: 1377 RMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLD 1412
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 680 bits (1756), Expect = 0.0
Identities = 435/1398 (31%), Positives = 702/1398 (50%), Gaps = 115/1398 (8%)
Query: 13 WTCEGEFDLGSF--C-IQSTIIDVINLV--FFCVFYLSLLVGSFR-KNHNYGRIRRECVS 66
W + + G++ C S +I++ +LV C++ + L+ + +
Sbjct: 18 WAKKVDNAFGAYTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFL 77
Query: 67 IVVSACCAVVGIAYLGYCLWNLIAKNDSSMS--WLVS-TVRGLIWVSLAISLLVKRSKWI 123
+++A C + L + L +S+ +VS V L W S+ + + V+ +I
Sbjct: 78 ALLAAYCTAEPLFRLVMGISVLNLDGQTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYI 137
Query: 124 RMLITLWWMSFSLLVL------ALNIEILARTY---TINVVYILPLPVNLL---LLFSAF 171
R W++ F+++ + LN+ + + Y + +YI + +L LL F
Sbjct: 138 REFR--WYVRFAVIYVLVGDAVMLNLVLSVKEYYSSFVLYLYISEVAAQVLFGILLLVYF 195
Query: 172 RNFSHFT--SPNREDKSLS---EPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPL 226
N + +P + E L + A + ++ F W+ PL+ LGY +PL
Sbjct: 196 PNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPL 255
Query: 227 ALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIA-IC 285
+D+ L D+ Y+ F WD E L+R + N L ++
Sbjct: 256 TEKDVWKLDTWDQTETLYRSFQKCWD----EELKKPKPWLLRAL--NNSLGGRFWLGGFF 309
Query: 286 ALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLS-----IVGCLIITKVVESFTQRHCFF 340
+ ++ VGPLLL N E++Q G I I VV +F
Sbjct: 310 KIGNDLSQFVGPLLL-------NLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQYF 362
Query: 341 GS-RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTW 399
+ R G R+RS L+ AV++K L+L+ GRKK ++G+I N + DA + + H W
Sbjct: 363 QNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHTLW 422
Query: 400 SLALQLFLAIGVLFGVVGLGALPG-LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRS 458
S ++ +A+ +L+ +G+ +L G L+L L+ + +K +QK E + D+R+
Sbjct: 423 SAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISK-MQKLTKEGLQRTDKRIGL 481
Query: 459 TSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVI 518
+E+L M +K +WE F+S +++ R+ E W +AQL A+ + I P +++ V
Sbjct: 482 MNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVS 541
Query: 519 F-----LGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573
F LG LT P A T ++ A LR P+ M+P ++ + VS R+ L
Sbjct: 542 FGVFTLLGGDLT---PARAFTSLSLFAVLRF---PLFMLPNLITQAVNANVSLKRLEELL 595
Query: 574 LDHELNNDDVRRI-----SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAV 628
L E R+ L+ ++ I+ G FSWD + PTL +NLD+ +A+
Sbjct: 596 LAEE-------RVLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAI 648
Query: 629 CGSVGAGKSSLLYAILGEIPKIS-GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKA 687
GS G GK+SL+ A+LGE+P S +V + G++AYV Q SWI + ++RDNIL+G P D
Sbjct: 649 VGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPE 708
Query: 688 RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF 747
RY++AI AL D++ GDLTEIG+RG+N+SGGQKQR+ +ARAVY+++D+Y+FDDP
Sbjct: 709 RYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPL 768
Query: 748 SAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807
SA+DAH +F++C+ L KT +LVT+Q+ FLS+VDRI+++ G I + G Y+EL
Sbjct: 769 SALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828
Query: 808 AGTAFEQLV-NAHRDAITGLGPLDNAGQGGAEKVEKGRTARP---EEPNGIYPRKESSEG 863
G F++L+ NA G ++ + E+ + +++P N + +K+SS
Sbjct: 829 NGPLFQKLMENA--------GKMEEYVEENGEEEDDQTSSKPVANGNANNL--KKDSSSK 878
Query: 864 EISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKG----MSLLCLGVLAQSGFVGLQAAA 919
+ S +G + L + EE E G V WK Y N G M L VL + + ++
Sbjct: 879 KKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEV----FRVSS 934
Query: 920 TYWLAYAIQ--IPKITS-GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTN 976
+ WL+ PK +YA +S + S++ L A+K
Sbjct: 935 STWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLG 994
Query: 977 SIFKAPMLFFDSTPVGRILTRLSSDLSILDFDI-PFSIVFVAASGTELL---AIIGIM-T 1031
SI +APM FF + P+GRI+ R + DL +D ++ F +F+ +LL +IGI+ T
Sbjct: 995 SILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFL-GQIFQLLSTFVLIGIVST 1053
Query: 1032 FVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFN 1091
W ++ + + A YY +TARE+ R++ T++PV E G+ TIRA+
Sbjct: 1054 ISLWAIMPLLVLFYGAY----LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 1109
Query: 1092 MVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVL-----IPRG 1146
DR + + +D + WL +R+E L L ++ A F V+ +
Sbjct: 1110 AYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQA 1169
Query: 1147 YVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRP 1206
A +GL LSYA +T + R N + +VER+ ++ +P E P ++E+ RP
Sbjct: 1170 AFAS-TMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRP 1228
Query: 1207 PSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL 1266
P WP G I+ + +RYRP P VL G++ S +VG+VGRTG+GK+++++ALFR+
Sbjct: 1229 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRI 1288
Query: 1267 VEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKAL 1326
VE G ILIDG DI GL DLR L IIPQ P LF G+VR NLDP ++D ++W++L
Sbjct: 1289 VELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESL 1348
Query: 1327 EKCQLKTTISSLPNKLDS 1344
E+ LK I LD+
Sbjct: 1349 ERAHLKDVIRRNSLGLDA 1366
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 617 bits (1593), Expect = 0.0
Identities = 410/1392 (29%), Positives = 681/1392 (48%), Gaps = 110/1392 (7%)
Query: 14 TCEGEFDLGSFC-IQSTIIDVINLVFF--CVFYLSLLVGSFRKNHNYGRIRRECVSIVVS 70
T +G F + C I S ++ V + V C + + +++ + + R + + +
Sbjct: 21 TVDGAFGAYTPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGIL 80
Query: 71 ACCAVVGIAY---LGYCLWNLIAKNDSSMSWLVS-TVRGLIWVSLAISLLVKRSKWIRML 126
AC VV +G L+++ + D + S V W S+ + + ++ ++++
Sbjct: 81 ACYCVVEPVLRLVMGISLFDMDEETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYVKEF 140
Query: 127 ITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVN--LLLLFSAFRNFS--------- 175
W++ F ++ + ++A +++V L +N L L + R
Sbjct: 141 --RWYVRFGVVYV-----LVADAVLLDLVLPLKNSINRTALYLCISSRCCQALFGILLLV 193
Query: 176 -----------HFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSK 224
H + D + L +N A + ++ FSW+ PL+ LGY K
Sbjct: 194 YIPELDPYPGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRK 253
Query: 225 PLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIA- 283
P+ +D+ L D+ ++F W E + L+R + N L ++
Sbjct: 254 PITEKDVWQLDQWDQTETLIKRFQRCW----TEESRRPKPWLLRAL--NNSLGGRFWLGG 307
Query: 284 ICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSR 343
I + ++ VGP++L + G+ G + + F
Sbjct: 308 IFKIGHDLSQFVGPVILSHLLQSMQEGDPAWV-GYVYAFLIFFGVTFGVLCESQYFQNVG 366
Query: 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLAL 403
R G R+RS L+ A++ K L+L+ RK ++G++ N I DA + + H WS
Sbjct: 367 RVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPF 426
Query: 404 QLFLAIGVLFGVVGLGALPG-LVLFLICGLLNVPFAKIL----QKCQSEFMIAQDERLRS 458
++ +++ +L+ +G+ +L G L+LFL+ +P ++ +K E + D+R+
Sbjct: 427 RIIVSMVLLYQQLGVASLFGSLILFLL-----IPLQTLIVRKMRKLTKEGLQWTDKRVGI 481
Query: 459 TSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVI 518
+EIL +M +K +WE+ F+S I+ R +E W +AQL A+ + I P +++ V
Sbjct: 482 INEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVS 541
Query: 519 F-----LGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573
F LG LT P A T ++ A LRS P+ M+P LS ++ VS RI L
Sbjct: 542 FGVFVLLGGDLT---PARAFTSLSLFAVLRS---PLNMLPNLLSQVVNANVSLQRIEELL 595
Query: 574 LDHELNNDDVRRI-----SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAV 628
L E RI LQ ++ I+ G FSWD + + PTL +NL+I +A+
Sbjct: 596 LSEE-------RILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAI 648
Query: 629 CGSVGAGKSSLLYAILGEIPKISGT-VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKA 687
G G GK+SL+ A+LGE+ + V + GS+AYV Q SWI + ++R+NIL+G +
Sbjct: 649 VGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESE 708
Query: 688 RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF 747
RY +AI AL D++ DLTEIG+RG+N+SGGQKQR+ +ARAVY+++DIY+FDDP
Sbjct: 709 RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPL 768
Query: 748 SAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807
SA+DAH A +F+ C+ L+ KT +LVT+Q+ FL +DRI+++ G I + G + EL
Sbjct: 769 SALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828
Query: 808 AGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEE--PNGIYPRKESSEGEI 865
+G+ F++L ++NAG+ A + + P E + G
Sbjct: 829 SGSLFKKL-------------MENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGST 875
Query: 866 --SVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWL 923
+G + L + EE E G + W M Y G+ ++ + ++ L+ +++ WL
Sbjct: 876 KQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWL 935
Query: 924 AYAIQIPKITS---GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFK 980
+ S G I VYA + + SF+ L A+K NSI +
Sbjct: 936 SIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILR 995
Query: 981 APMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELL---AIIGIMTFVT-WQ 1036
APMLFF + P GR++ R S D+ +D ++ + +LL A+IG ++ ++ W
Sbjct: 996 APMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWA 1055
Query: 1037 VLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096
++ + I A YY +T+RE+ R++ T++P+ E G+ +IRA+ DR
Sbjct: 1056 IMPLLILFYAAY----LYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRM 1111
Query: 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVL----IPRGYVAPGL 1152
+ K +D + WL +R+E L + ++ A F VL
Sbjct: 1112 AKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFAST 1171
Query: 1153 VGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPF 1212
+GL LSY +T + R N + SVER+ ++ +P E AI+E+ RP S WP
Sbjct: 1172 MGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPS 1231
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
+G I+ + +RYRP P VL G++ S +VGVVGRTG+GK+++++ALFR+VE G
Sbjct: 1232 RGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKG 1291
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLK 1332
I+ID D+ GL DLR LSIIPQ P LF G+VR N+DP ++D ++W+ALE+ +K
Sbjct: 1292 RIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIK 1351
Query: 1333 TTISSLPNKLDS 1344
I P LD+
Sbjct: 1352 DVIDRNPFGLDA 1363
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 407 bits (1047), Expect = e-119
Identities = 240/770 (31%), Positives = 373/770 (48%), Gaps = 46/770 (5%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
LR V++ + + V G+ G+GKS+LL ++L + G V SIAYV Q +WI +
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNA 735
Query: 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732
++R NIL+ D AR A++ L+ D+ G TEIG++G+NLSGGQK R+ LAR
Sbjct: 736 TVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLAR 795
Query: 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792
AVY + D+YL DDP SA+DAH + EC + AL KT +L THQV + D ++ L
Sbjct: 796 AVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALG 855
Query: 793 GGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPN 852
G++ SG+ + + + + L ++ +A + G EP
Sbjct: 856 DGRVEFSGSSAD-FMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVD--HEPP 912
Query: 853 GIYPRKESSEGEISVKGLT--QLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQS 910
+ G+ + +L EE G V W ++ YL G+ VLA
Sbjct: 913 VAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGL-HAAGFVLATF 971
Query: 911 GFVGL-QAAATYWLA-YAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASK 968
L ++ WL+ ++ + K+++ + VY G+ V R F + + S+
Sbjct: 972 AVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSR 1031
Query: 969 AFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIG 1028
S+ + M FFD+TP+GRIL R S D+ ILD +P S +++ + + I
Sbjct: 1032 NMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSIL 1091
Query: 1029 IMTFVTWQVLVVAIFAMVAVRFV----QRYYIATARELIRINGTTKAPVMNYTAETSQGV 1084
+ + Q V + A+V ++ ++Y + RE+ RI K+PV E QG
Sbjct: 1092 VTSAS--QPFV--LVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGS 1147
Query: 1085 VTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV--- 1141
TI A+ Q L+ +D+ S + N WL +RVE L N+ + AL V
Sbjct: 1148 ATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGT 1207
Query: 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH-IP----PE 1196
++ GLV LSL+ A T T +L R + + SVER+ + +P PE
Sbjct: 1208 MLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPE 1267
Query: 1197 PPAIV-------------------EDKRPPSSWPF---KGRIELRQLKIRYRPNAPLVLK 1234
V E P S+ P G + +++RYR PLVL+
Sbjct: 1268 LDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLR 1327
Query: 1235 GITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294
G++ + +VG+VGRTGSGK+TL+ R+VE GG I ++G +I + GL++LR + S
Sbjct: 1328 GVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387
Query: 1295 IIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS 1344
+IPQ+P LF G+VR N+DP S E+W ALE L+ ++S +DS
Sbjct: 1388 MIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDS 1437
|
Length = 1560 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 335 bits (863), Expect = e-107
Identities = 112/204 (54%), Positives = 153/204 (75%), Gaps = 3/204 (1%)
Query: 595 VKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652
+ +++ +F+WD TL+ +NL++ + +A+ G VG+GKSSLL A+LGE+ K+SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 653 TVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+V++ GSIAYVSQ WIQ+G+IR+NIL+GKP D+ RY+K IKACAL+ D+ GDLTE
Sbjct: 61 SVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTE 120
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKT 771
IG++G+NLSGGQKQRI LARAVY+DADIYL DDP SAVDAH +F C++ L KT
Sbjct: 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT 180
Query: 772 VILVTHQVEFLSEVDRILVLEGGQ 795
ILVTHQ++ L D+I+VL+ G+
Sbjct: 181 RILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 278 bits (712), Expect = 4e-76
Identities = 199/673 (29%), Positives = 310/673 (46%), Gaps = 59/673 (8%)
Query: 197 QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVR 256
++ + KA L KL F W P+L GY + L L DI + D A ++ WD R
Sbjct: 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWD---R 59
Query: 257 E-NNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLL---YAFVNYSNRGEE 312
E ++ N L+ + + +F I V PLLL A + N E
Sbjct: 60 ELASAKKNPKLLN-ALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPER 118
Query: 313 NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKH 372
+ L++ CL+ +V + FG GM+MR AL +Y+K LKLSS K
Sbjct: 119 EIAYYLALGLCLLF--IVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKI 176
Query: 373 STGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGL 432
STG++V+ ++ + + E H W LQ+ L +G+++ ++ + GL ++ L
Sbjct: 177 STGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLAL 236
Query: 433 LNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKW 492
+ + + + ERL TSEI+ N++ +K WEE + +I++ R+ E K
Sbjct: 237 FQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKL 296
Query: 493 LSEAQLRKAYGTVIYWMSP-----------------------TIISSVIFLGCALTGSAP 529
+ + + + ++ S T IS I L +T P
Sbjct: 297 TRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKGIILRRIFTTISYCIVLRMTVTRQFP 356
Query: 530 LNASTIFTVLATLRSM-----GEPVRMIPEALS----IMIQVKVSFDRINAFLLDHELNN 580
T + L + + E + + L+ M+ V S+D L + N
Sbjct: 357 GAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKIKQN 416
Query: 581 DDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL 640
+ R+ D + NFS P L+ ++ ++ Q +AV GS G+GKSSLL
Sbjct: 417 NKARKQP--NGDDGLFFS--NFSL---YVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLL 469
Query: 641 YAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700
I+GE+ G + G I++ QTSWI G+I+DNI++G D+ RY IKAC L++
Sbjct: 470 MMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEE 529
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
DI F D T +G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF+ +D T +F
Sbjct: 530 DIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFE 589
Query: 761 ECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL----------LLAGT 810
C+ + KT ILVT ++E L + D+IL+L G G + EL LL
Sbjct: 590 SCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLE 649
Query: 811 AFEQLVNAHRDAI 823
AF+ R++I
Sbjct: 650 AFDNFSAERRNSI 662
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 2e-66
Identities = 137/570 (24%), Positives = 267/570 (46%), Gaps = 24/570 (4%)
Query: 265 NLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCL 324
+L+R+++ + K + + LL + ++ PLL+ ++ L E L ++ L
Sbjct: 2 SLLRRLLKYLKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLL 61
Query: 325 IITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVD 384
+ V Q + R G ++ + L +++K L+L K +G++++ + D
Sbjct: 62 ALLGGVLRALQ---SYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTND 118
Query: 385 AYRMGE-FPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQK 443
+ L ++ L L ++ +LF + AL L++ + L+ A+ +K
Sbjct: 119 VEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRK 178
Query: 444 CQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFK-WLSEAQLRKAY 502
A E E L+ +++IK E++ E E+ + L ++L
Sbjct: 179 LSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALL 238
Query: 503 GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQV 562
++ +S V+ LG L S L + + L + P+ + E +S++ +
Sbjct: 239 APLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRA 298
Query: 563 KVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKW 622
+ +R+ LLD E +D L+ + S++ + +FS+ + P L+ ++ I+
Sbjct: 299 SAAAERLFE-LLDEEPEVED-PPDPLKDTIGSIEFENVSFSYPGK--KPVLKDISFSIEP 354
Query: 623 AQKIAVCGSVGAGKSSLLYAILGEIPKISGTV-------------NLYGSIAYVSQTSWI 669
+K+A+ G G+GKS+L+ +L SG + +L I VSQ +
Sbjct: 355 GEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414
Query: 670 QSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728
SG+IR+NI G+P ++A+K + I N G T +G+RG+NLSGGQ+QR+
Sbjct: 415 FSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRL 474
Query: 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRI 788
+ARA+ + I + D+ SA+D T A + + + L+ +T +++ H++ + DRI
Sbjct: 475 AIARALLRNPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLSTIKNADRI 533
Query: 789 LVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
+VL+ G+I + G ++ELL G + +L A
Sbjct: 534 IVLDNGRIVERGTHEELLAKGGLYARLYQA 563
|
Length = 567 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 3e-65
Identities = 79/142 (55%), Positives = 104/142 (73%), Gaps = 4/142 (2%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
G IE + + +RYRPN P VLK I+ + G +VG+VGRTGSGK++L+ ALFRLVE + GS
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKT 1333
ILIDGVDI +GL DLR ++SIIPQ+P LF G++R+NLDP G YSD+E+W+ALE+ LK
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1334 TISSLPNKLDS----SGKLFSA 1351
+ SLP LD+ G+ S
Sbjct: 121 FVESLPGGLDTVVEEGGENLSV 142
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 219 bits (560), Expect = 5e-61
Identities = 107/447 (23%), Positives = 189/447 (42%), Gaps = 13/447 (2%)
Query: 904 LGVLAQSGFVGLQAAATYWLAYAIQIPKITSGI---LIGVYAGVSTASAVFVYFRSFFAA 960
L +L L + I G L+ + ++ V +S+ +
Sbjct: 18 LAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGS 77
Query: 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020
LG K + + P+ FFD G +++RL++D+ + + +V V S
Sbjct: 78 RLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSI 137
Query: 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAET 1080
L+ + ++ ++W++ ++ + + + V +R+L R + E+
Sbjct: 138 LLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLES 197
Query: 1081 SQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF- 1139
G+ I+AF DR + + + + + + L + L +L
Sbjct: 198 LSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALG 257
Query: 1140 LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199
L+ G + G + + Y L + L L + ER+ + + PE
Sbjct: 258 GFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPE--- 314
Query: 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259
VED P G IE + Y P VLK I+ + G +V +VG +GSGK+TL
Sbjct: 315 -VED-PPDPLKDTIGSIEFENVSFSYPGKKP-VLKDISFSIEPGEKVAIVGPSGSGKSTL 371
Query: 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL--Y 1317
I L RL +P G ILIDG+DI + L LR ++ I+ Q+P LF G++R N+ LG
Sbjct: 372 IKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIA-LGRPDA 430
Query: 1318 SDDEIWKALEKCQLKTTISSLPNKLDS 1344
+D+EI +AL+ I++LP+ D+
Sbjct: 431 TDEEIEEALKLANAHEFIANLPDGYDT 457
|
Length = 567 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 1e-57
Identities = 94/232 (40%), Positives = 134/232 (57%), Gaps = 10/232 (4%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA 661
FS + P L+ +NL I+ + +A+ GS G+GK+SLL ILGE+ G + G I+
Sbjct: 42 FSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRIS 101
Query: 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721
+ SQ SWI G+I++NI++G D+ RY +KAC L++DI F D T +G+ G+ LS
Sbjct: 102 FSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLS 161
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781
GGQ+ RI LARAVY DAD+YL D PF +D T +F CV + KT ILVT ++E
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEH 221
Query: 782 LSEVDRILVLEGGQITQSGNYQEL----------LLAGTAFEQLVNAHRDAI 823
L + D+IL+L G G + EL L+ F+Q R++I
Sbjct: 222 LKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFSAERRNSI 273
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 185 bits (470), Expect = 4e-53
Identities = 87/219 (39%), Positives = 128/219 (58%), Gaps = 21/219 (9%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
V++ G FSW L TL +N+ I Q + G VG GKSSLL AILGE+ + G V
Sbjct: 1 VQVTNGYFSWGSGL--ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 655 NL-----------------YGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACA 697
+ S+AY +Q W+ + ++ +NI +G P +K RY AC+
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACS 118
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
L DI+ GD TEIG+RG+NLSGGQ+QRI +ARA+Y + +I DDPFSA+D H +
Sbjct: 119 LQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 758 LFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGG 794
L E ++ L +K+T++LVTH++++L D I+ ++ G
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 1e-52
Identities = 133/534 (24%), Positives = 249/534 (46%), Gaps = 47/534 (8%)
Query: 854 IYPRKESSEG------EISVKGLTQLTEDEEMEIGDV-GWKPFMDYLNVSKGMS---LLC 903
IY R+ S + EI+ + L + DE + + W ++ Y+ ++ + + C
Sbjct: 814 IYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFC 873
Query: 904 LGVLA---QSGFVGL-----------------QAAATYWLAYAIQIPKITSGILIGVYAG 943
L + + +GL A++ + + I ++ + +Y G
Sbjct: 874 LVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVG 933
Query: 944 VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLS 1003
+ + +FR H L SK +S+ +APM ++ GRIL R + D++
Sbjct: 934 TADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMA 993
Query: 1004 ILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELI 1063
I+D +P ++ +L I +++ + + + AI V ++ Y++ T+++L
Sbjct: 994 IIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLK 1053
Query: 1064 RINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLIL 1123
++ ++P+ ++ + +G+ TIRAF F + K +++ + +F + W +
Sbjct: 1054 QLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQM 1113
Query: 1124 RVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIIS 1183
R++ + F A F+ + G VG+ L+ A + T + + + S
Sbjct: 1114 RIDIIFVF-FFIAVTFIAIGTNQ-DGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRS 1171
Query: 1184 VERIKQFMHIPPEPPA--------------IVEDKRPPSSWPFKGRIELRQLKIRYRPNA 1229
V R+ +F+ +P E P ++E+ WP G+++++ L +Y
Sbjct: 1172 VSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAG 1231
Query: 1230 PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL 1289
VL+ ++ + G RVG++GRTGSGK+TL+SAL RL+ G I IDGV S+ L+
Sbjct: 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW 1290
Query: 1290 RVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLD 1343
R +IPQ+ +F G+ R NLDP +SD+EIWK E+ LK+ I P+KLD
Sbjct: 1291 RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLD 1344
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 2e-50
Identities = 137/572 (23%), Positives = 246/572 (43%), Gaps = 56/572 (9%)
Query: 279 NIFIAICALLRTIAVVVGPLLLYAFVNY--SNRGEENLQEGLSIVGCLIITKVVESFTQR 336
+ +A +LL + + PL ++ + L + + + + +
Sbjct: 158 EVLLA--SLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRT 215
Query: 337 HCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEF----P 392
+ G R+ L ++ L+L +K S GEI++ R+ E
Sbjct: 216 YLIA---HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIIS-------RVRELEQIRE 265
Query: 393 FWFHLTWSLALQLFLAIGVLFGVVGLG---------ALPGLVLFLICGLLNVPFAKILQK 443
F LT L L + + LF ++ L L L + L+ + F +L++
Sbjct: 266 F---LT-GSILTLIIDL--LFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRR 319
Query: 444 CQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG 503
+ + E+ E + ++ +K + E +F+S ++R K+ + K
Sbjct: 320 KTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNI--GFKTEKLAL 377
Query: 504 TVIYWMSP-TIISSVI--FLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMI 560
+ S +SSV+ + G L L + P+ + + +
Sbjct: 378 ILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQ 437
Query: 561 QVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620
Q KV+ +R+ L D I L K ++ + +F + P+ P L ++L+I
Sbjct: 438 QAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEI 496
Query: 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTS 667
+K+A+ G G+GKS+LL +LG G + L G + YV Q
Sbjct: 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDP 556
Query: 668 WIQSGSIRDNILYGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725
++ SGSIR+NI G P D+ + A A A + I N G T +G+ G NLSGGQ+
Sbjct: 557 FLFSGSIRENIALGNPEATDEEIIEAAQLAGAHE-FIENLPMGYDTPVGEGGANLSGGQR 615
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV 785
QR+ LARA+ + I L D+ SA+D T A + + ++ L+ +TVI++ H++ +
Sbjct: 616 QRLALARALLSKPKILLLDEATSALDPETEA-IILQNLLQILQGRTVIIIAHRLSTIRSA 674
Query: 786 DRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
DRI+VL+ G+I + G+++ELL G + +L
Sbjct: 675 DRIIVLDQGKIVEQGSHEELLAQGGLYARLYQ 706
|
Length = 709 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 5e-47
Identities = 63/118 (53%), Positives = 85/118 (72%)
Query: 1210 WPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP 1269
WP G IE+ L +RY P+ P VLK ++ G ++G+VGRTG+GK+TLI ALFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1270 AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALE 1327
G I IDG+DI ++ L+DLR L+IIPQ+PTLF G++R+NLDP YSD+EI+ AL
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR 118
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 2e-43
Identities = 139/581 (23%), Positives = 233/581 (40%), Gaps = 69/581 (11%)
Query: 282 IAICALLRTIAVVVGPLLL-YAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFF 340
A+ A+L IA++ LL + Q L ++ L+I V+ +F +
Sbjct: 5 SALLAVLSGIAIIAQAALLADILTKLIE--GQLFQSLLPLLILLLIALVLRAFLA---WL 59
Query: 341 GSR---RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIA-----VDAYRMGEFP 392
R R+ ++R++L V K KL + G ++ Y P
Sbjct: 60 RERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLP 119
Query: 393 FWFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFM 449
F + L + +AI ++ L P + LF+I L+ + +K S
Sbjct: 120 QMFLSAI-VPLLILIAIFFFNWAAALILLITAPLIPLFMI--LVGLAAKDASEKQFSALA 176
Query: 450 IAQD---ERLRSTSEILNNMKIIKL-QSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTV 505
+RLR L ++ ++ EE+ + E R+ L A L A
Sbjct: 177 RLSGHFLDRLRG----LETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEF 232
Query: 506 IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVL-------ATLRSMGEP--VRMIPEAL 556
+I +++G L G L VL LR +G EA
Sbjct: 233 F--AYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAA 290
Query: 557 SIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS--VKIQEGNFSWDPELAIPTLR 614
+ D++ L E + ++I N S+ P L
Sbjct: 291 A---------DKLFTLL---ESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALS 338
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV-------------NLYGSIA 661
+NL IK Q A+ G+ GAGKS+LL +LG + G + I+
Sbjct: 339 DLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398
Query: 662 YVSQTSWIQSGSIRDNILYGKPMD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720
+VSQ ++ +G+IR+NIL +P A+ L + + D D T IG+ G L
Sbjct: 399 WVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLD-TVIGEGGAGL 457
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE 780
SGGQ QR+ LARA+ + A + L D+P + +DA T + A ++KTV+++TH++E
Sbjct: 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELA-KQKTVLVITHRLE 516
Query: 781 FLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRD 821
++ DRI+VL+ G++ + G ++EL + L+
Sbjct: 517 DAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557
|
Length = 559 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 2e-41
Identities = 80/214 (37%), Positives = 120/214 (56%), Gaps = 16/214 (7%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658
+FS+ + IP L V+L I+ +K+A+ G VG+GKS+LL + G SG+V L G
Sbjct: 9 SFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTD 67
Query: 659 -----------SIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFD 706
+I YV Q + G++RDNI G P+ D R +A + + +N
Sbjct: 68 IRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHP 127
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+G +IG+RG LSGGQ+Q + LARA+ ND I L D+P SA+D ++ L E +
Sbjct: 128 NGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK-ERLRQL 186
Query: 767 LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
L KT+I++TH+ L VDRI+V++ G+I G
Sbjct: 187 LGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 5e-41
Identities = 115/498 (23%), Positives = 228/498 (45%), Gaps = 46/498 (9%)
Query: 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFL 407
R+ SAL V +++K LS ++ +G+++N + D + +AL L
Sbjct: 88 RVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIA 147
Query: 408 AIGVLFGVVGLGALPGLVLFLICGLLNVP--FAKILQKCQSEFMIAQDERLRSTSEILNN 465
+ + + L L L+ LL +P F + +K + + ++ +
Sbjct: 148 VVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQG 207
Query: 466 MKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSP------TIISSVIF 519
+ + E+ + + E WL +AQ ++A T + +I +++
Sbjct: 208 QAELLIFGAEDAY---RTALEATEASWL-KAQRKQARFTGLSDAILLLIAGLLVIGLLLW 263
Query: 520 LGCAL---TGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH 576
+ + + P A + + A L + EP+ P A + QV S R+N +LD
Sbjct: 264 MAAQVGAGALAQPGAALALLVIFAALEAF-EPLA--PGAFQHLGQVIASARRLND-ILDQ 319
Query: 577 ----ELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSV 632
++ + ++++++ +F++ P L+ NL + +K+A+ G
Sbjct: 320 KPEVTFPDEQTAT-----TGQALELRNVSFTY-PGQQTKALKNFNLTLAQGEKVAILGRS 373
Query: 633 GAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNIL 679
G+GKS+LL + G G++ L G +I+ ++Q + SG++RDN+
Sbjct: 374 GSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLR 433
Query: 680 YGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737
P D+ + A++ L+K + + G T +G+ G LSGG+++R+ LARA+ +D
Sbjct: 434 LANPDASDEELWA-ALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD 492
Query: 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQIT 797
A ++L D+P +D T + + E KT+++VTH++ L +DRI+VL+ G+I
Sbjct: 493 APLWLLDEPTEGLDPITERQVL-ALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKII 551
Query: 798 QSGNYQELLLAGTAFEQL 815
+ G + ELL +++L
Sbjct: 552 EEGTHAELLANNGRYKRL 569
|
Length = 573 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 3e-40
Identities = 103/419 (24%), Positives = 185/419 (44%), Gaps = 48/419 (11%)
Query: 948 SAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDF 1007
A+ R++ AHLG + F + + P+ +F+ VG I++R+ I +F
Sbjct: 207 EALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVRELEQIREF 266
Query: 1008 ----------DIPFSIVFVAASGTELLAIIGIMTF-VTWQVLVVAIFAMVAVRFVQRYYI 1056
D+ F+++F LA++ + ++ +T VL ++ Q
Sbjct: 267 LTGSILTLIIDLLFALIF--------LAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLR 318
Query: 1057 ATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFF---H 1113
R+LI + ++ + ET +G+ T++A RF + + ++ F
Sbjct: 319 RKTRKLIEESAEQQS----FLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEK 374
Query: 1114 TNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPG-------LVGLSLSYAFTLTGT 1166
++ + ++ L ++ + LVL G + G L G +S L+
Sbjct: 375 LALILNTIKSLLQQLSSVLILWFGAILVL--EGELTLGQLVAFNMLAGYFISPITRLSQ- 431
Query: 1167 QVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYR 1226
+ + +++ER+ + PPE DK +G IE + RY
Sbjct: 432 --LWTDF----QQAKVALERLGDILDTPPEQE---GDKTLIHLPKLQGEIEFENVSFRYG 482
Query: 1227 PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL 1286
P+ P VL+ ++ G +V +VGR+GSGK+TL+ L L +P G IL+DGVD+ + L
Sbjct: 483 PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDL 542
Query: 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPLGL--YSDDEIWKALEKCQLKTTISSLPNKLD 1343
LR ++ + Q+P LF GS+R N+ LG +D+EI +A + I +LP D
Sbjct: 543 ASLRRQVGYVLQDPFLFSGSIRENIA-LGNPEATDEEIIEAAQLAGAHEFIENLPMGYD 600
|
Length = 709 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 3e-40
Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 19/230 (8%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEI 647
++ + NFS+D + P L+ +N IK + +A+ G GAGK++L+ ++ G+I
Sbjct: 3 IEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 648 PKISGT-------VNLYGSIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALD 699
I G +L I V Q +++ SG+I +NI G+P +A K
Sbjct: 61 -LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
I +G T +G+ G NLS G++Q + +ARA+ D I + D+ S +D T +
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI- 178
Query: 760 NECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809
E + ++ +T I++ H++ + D+ILVL+ G+I + G + ELL
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 6e-40
Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 56/214 (26%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
++ + +FS+ P L+ V+L IK +K+A+ G G+GKS+LL +L SG +
Sbjct: 1 IEFKNVSFSYPGRPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
+ G +IAYV Q ++ SG+IR+NIL
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL---------------------- 97
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
SGGQ+QRI +ARA+ D I + D+ SA+D T A L E
Sbjct: 98 -------------------SGGQRQRIAIARALLRDPPILILDEATSALDPETEA-LILE 137
Query: 762 CVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795
+ A + KTVI++ H++ + + DRI+VL+ G+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 7e-39
Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 23/224 (10%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGT----VNL---YGSIAYV 663
+N + Q+IA+ G GAGK+SLL A+LG +P KI+G ++ +++V
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 664 SQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722
Q + G++RDN+L G P + +A++ + + + G T IG + LS
Sbjct: 429 GQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV 488
Query: 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVILVTHQ 778
GQ QR+ LARA+ + L D+P +++DAH+ + VM AL +T ++VTHQ
Sbjct: 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSE-----QLVMQALNAASRRQTTLMVTHQ 543
Query: 779 VEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDA 822
+E L++ D+I V++ GQI Q G+Y EL AG F L AHR
Sbjct: 544 LEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATL-LAHRQE 586
|
Length = 588 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 3e-38
Identities = 77/240 (32%), Positives = 125/240 (52%), Gaps = 26/240 (10%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEI 647
V+ + F + + P LR ++LDI + +A+ G G+GKS+L+ I G I
Sbjct: 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 648 PKISGT-------VNLYGSIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALD 699
I G +L I VSQ ++ + ++ +NI YG+P + ++A +A
Sbjct: 60 -LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAH 118
Query: 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
+ I G T IG+RG+ LSGGQ+QRI +ARA+ D I + D+ SA+D +
Sbjct: 119 EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES----- 173
Query: 760 NECVMAALEK----KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
V AALE+ +T ++ H++ + DRI+VLE G+I + G ++ELL G + +L
Sbjct: 174 ERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 5e-38
Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 25/228 (10%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISG----TVNLY- 657
+P L+G++L I + +A+ GS G GKS+++ + GEI + G +NL
Sbjct: 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL-LDGVDIRDLNLRW 74
Query: 658 --GSIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIG 714
I VSQ + G+I +NI YGKP ++A K + I + G T +G
Sbjct: 75 LRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVG 134
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----K 770
+RG LSGGQKQRI +ARA+ + I L D+ SA+DA + V AL++ +
Sbjct: 135 ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL-----VQEALDRAMKGR 189
Query: 771 TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
T I++ H++ + D I VL+ GQ+ + G + EL+ + +LV A
Sbjct: 190 TTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKA 237
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 2e-37
Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 21/230 (9%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISG-- 652
F++DP P L+ V+ I +K+A+ G G+GKS++L + G I I G
Sbjct: 8 FAYDPGR--PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI-LIDGQD 64
Query: 653 ----TVN-LYGSIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNF 705
T++ L +I V Q + + + +I NI YG+P D+ +A KA + I F
Sbjct: 65 IREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVI-EAAKAAQIHDKIMRF 123
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
G T +G+RGL LSGG+KQR+ +ARA+ + I L D+ SA+D HT + +
Sbjct: 124 PDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ-AALRD 182
Query: 766 ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+ +T I++ H++ + D+I+VL+ G+I + G ++ELL G + ++
Sbjct: 183 VSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 2e-37
Identities = 86/279 (30%), Positives = 141/279 (50%), Gaps = 19/279 (6%)
Query: 543 RSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNF 602
R++ P+ + L+ Q K + ++ L+ + + R L + +I+ N
Sbjct: 413 RALA-PLGQLAGLLTRYQQAKTALQSLDE-LMQLPVERPEGTRF-LHRPRLQGEIEFRNV 469
Query: 603 SWD-PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658
S+ P P L V+L I+ +K+A+ G +G+GKS+LL +LG G+V L G
Sbjct: 470 SFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDI 529
Query: 659 ----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDH 707
+I YV Q + G++RDNI G P D +A + + + +
Sbjct: 530 RQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPD 589
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
G +IG+RG +LSGGQ+Q + LARA+ D I L D+P SA+D + + F + + L
Sbjct: 590 GLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD-NRSEERFKDRLKRWL 648
Query: 768 EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
KT++LVTH+ L VDRI+V++ G+I G ++L
Sbjct: 649 AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVL 687
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 1e-36
Identities = 125/449 (27%), Positives = 202/449 (44%), Gaps = 41/449 (9%)
Query: 400 SLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVP--------FAKILQKCQSEFMIA 451
S L LFL + +L V ++LFL LL++P F + K + M A
Sbjct: 271 STILSLFLDMWILVIVGLFLVRQNMLLFL-LSLLSIPVYAVIIILFKRTFNKLNHDAMQA 329
Query: 452 QDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR----REKEFKWLSEAQLRKAYGTVIY 507
S E LN ++ IK + E + S I+S K FK+ Q ++A V
Sbjct: 330 NAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVT- 388
Query: 508 WMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFD 567
+ +++ G L L + T A L P+ I + +V+ +
Sbjct: 389 --KLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANN 446
Query: 568 RIN-AFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKI 626
R+N +L+D E N +R L + + I + ++S+ L ++L IK K
Sbjct: 447 RLNEVYLVDSEFINKK-KRTELNNLNGDIVINDVSYSYG--YGSNILSDISLTIKMNSKT 503
Query: 627 AVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGS 673
+ G G+GKS+L ++G SG + L G I Y+ Q +I SGS
Sbjct: 504 TIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGS 563
Query: 674 IRDNILYG-KPMDKARYDKAIKACAL---DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729
I +N+L G K D+ AC + DI N G TE+ + G ++SGGQKQRI
Sbjct: 564 ILENLLLGAKE--NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIA 621
Query: 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789
LARA+ D+ + + D+ S +D T + N + L+ KT+I V H++ + D+I+
Sbjct: 622 LARALLTDSKVLILDESTSNLDTITEKKIVNNLL--NLQDKTIIFVAHRLSVAKQSDKII 679
Query: 790 VLEGGQITQSGNYQELLLAGTAFEQLVNA 818
VL+ G+I + G++ ELL + L++
Sbjct: 680 VLDHGKIIEQGSHDELLDRNGFYASLIHN 708
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 7e-36
Identities = 67/195 (34%), Positives = 105/195 (53%), Gaps = 15/195 (7%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL-------------Y 657
P LR V+ + +++A+ G GAGKS+LL +LG + G++ +
Sbjct: 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
IA+V Q ++ +G+I +NI +P A +A++ LD+ + G T IG+
Sbjct: 396 DQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEG 455
Query: 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVT 776
G LSGGQ QR+ LARA DA + L D+P + +DA T A E + A + +TV+LVT
Sbjct: 456 GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEA-EVLEALRALAQGRTVLLVT 514
Query: 777 HQVEFLSEVDRILVL 791
H++ + DRI+VL
Sbjct: 515 HRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 5e-35
Identities = 83/289 (28%), Positives = 147/289 (50%), Gaps = 3/289 (1%)
Query: 287 LLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346
LL + + P+LL FV + + GL +V L +T++++S ++ S R G
Sbjct: 254 LLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCG 313
Query: 347 MRMRSALMVAVYQKQLKLS--SLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQ 404
++ RSAL +++K +S SL + +TG I+N ++ D R+ F + WS +
Sbjct: 314 LQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMV 373
Query: 405 LFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILN 464
L L+I +L +VG AL + + L+ LN K + + A D R+++T+E +
Sbjct: 374 LLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFS 433
Query: 465 NMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCAL 524
++I K +WE F + IE +R +E ++L + QL + + + +PT++ +V+F L
Sbjct: 434 GIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYL 493
Query: 525 TGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573
G L +F +A L + P MIP + ++Q VS RI+ FL
Sbjct: 494 LGHE-LTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFL 541
|
Length = 1560 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 4e-34
Identities = 63/131 (48%), Positives = 84/131 (64%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
G I++ L +RY N VLK + G +VG+ GRTGSGK++L A FR+V+ G
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKT 1333
I+IDG+DI + L LR +LSII Q+P LF GS+R NLDP +DD +W+ALE QLK
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1334 TISSLPNKLDS 1344
+ SLP LD+
Sbjct: 138 MVKSLPGGLDA 148
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 6e-34
Identities = 132/590 (22%), Positives = 252/590 (42%), Gaps = 91/590 (15%)
Query: 280 IFIAICALL------RTIAVVVGPLLLYAFVNYSNRGEENLQE-GLSIVGCLIITKVVES 332
+ +A A++ T+A ++ PLL F R L L ++G L + + + S
Sbjct: 16 LVLAGVAMILVAATESTLAALLKPLLDDGF---GGRDRSVLWWVPLVVIG-LAVLRGICS 71
Query: 333 FTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYI----------A 382
F + S S +R + V +++K L L + TG +++ I A
Sbjct: 72 FVSTYLL--SWVSNKVVRD-IRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAA 128
Query: 383 VDAYR---------MGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLL 433
DA+ +G F + +W L L + +V+ + +L
Sbjct: 129 TDAFIVLVRETLTVIGLFIVLLYYSWQLTLIV------------------VVMLPVLSIL 170
Query: 434 NVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKL---QSWE-EKFKSLIESRREKE 489
+K L++ E + + E L +++KL Q++E +F ++ R
Sbjct: 171 MRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLA 230
Query: 490 FKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPV 549
K + ++ ++ V+F+ + L A + + ++ P+
Sbjct: 231 MK---MTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPL 287
Query: 550 RMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELA 609
+ + + M + + + + L D D R +++++ V+ + F + P
Sbjct: 288 KSLTNVNAPMQRGLAAAESLFTLL-DSPPEKDTGTR-AIERARGDVEFRNVTFRY-PGRD 344
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV-------------NL 656
P L ++L I+ + +A+ G G+GKS+L+ I SG + +L
Sbjct: 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404
Query: 657 YGSIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIG 714
+A VSQ + + +I +NI YG+ D+A ++A+ A ++ G T IG
Sbjct: 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC---VMAALEK-- 769
+ G+ LSGGQ+QR+ +ARA+ DA I + D+ SA+D NE V AALE+
Sbjct: 465 ENGVLLSGGQRQRLAIARALLKDAPILILDEATSALD--------NESERLVQAALERLM 516
Query: 770 --KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
+T +++ H++ + + DRI+V++ G+I + G + ELL + QL N
Sbjct: 517 QGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHN 566
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 2e-32
Identities = 82/261 (31%), Positives = 132/261 (50%), Gaps = 28/261 (10%)
Query: 565 SFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQ 624
++ RI A L + + D + + + V I++ + P+ P L VN +K Q
Sbjct: 286 AYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTY---PQTDHPALENVNFTLKPGQ 342
Query: 625 KIAVCGSVGAGKSSLLYAIL-------GEI-------PKISGTVNLYGSIAYVSQTSWIQ 670
+ +CG G+GKS+LL I G+I K+ + +A VSQT ++
Sbjct: 343 MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQ-LDSWRSRLAVVSQTPFLF 401
Query: 671 SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729
S ++ +NI G+P + + + ++ DI G TE+G+RG+ LSGGQKQRI
Sbjct: 402 SDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRIS 461
Query: 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL----EKKTVILVTHQVEFLSEV 785
+ARA+ +A+I + DD SAVD T ++ L E +TVI+ H++ L+E
Sbjct: 462 IARALLLNAEILILDDALSAVDGRTEHQ-----ILHNLRQWGEGRTVIISAHRLSALTEA 516
Query: 786 DRILVLEGGQITQSGNYQELL 806
ILV++ G I Q GN+ +L
Sbjct: 517 SEILVMQHGHIAQRGNHDQLA 537
|
Length = 569 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 9e-32
Identities = 81/270 (30%), Positives = 131/270 (48%), Gaps = 19/270 (7%)
Query: 561 QVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620
Q ++ +R+ +L+ +L + ++ + F + P+ L +NLDI
Sbjct: 423 QTGIALERLGD-ILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSP-EVLSNLNLDI 480
Query: 621 KWAQKIAVCGSVGAGKSSL------LYA-------ILGEIPKISGTVNLYGSIAYVSQTS 667
K + I + G G+GKS+L LY + G I+ L + V Q +
Sbjct: 481 KPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQEN 540
Query: 668 WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726
+ S SIRDNI P A K I+ G TE+G++G NLSGGQ+Q
Sbjct: 541 VLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQ 600
Query: 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQVEFLSEV 785
RI +ARA+ + I +FD+ SA+D + A + M + + +TVI++ H++ +
Sbjct: 601 RIAIARALVGNPRILIFDEATSALDYESEALIMRN--MREICRGRTVIIIAHRLSTVRAC 658
Query: 786 DRILVLEGGQITQSGNYQELLLAGTAFEQL 815
DRI+VLE GQI +SG ++ELL + +L
Sbjct: 659 DRIIVLEKGQIAESGRHEELLALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 1e-31
Identities = 60/222 (27%), Positives = 117/222 (52%), Gaps = 17/222 (7%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
++ + + + P L P L+ ++ IK +K+ + G G+GKSSLL A+ + SG+
Sbjct: 2 DIEFKNVSLRYRPNLP-PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKACALD 699
+ + G I+ + Q + SG+IR N+ +G+ D+ + A++ L
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQ-ALERVGLK 119
Query: 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
+ + + G T + + G NLS GQ+Q + LARA+ + I + D+ ++VD T A +
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI- 178
Query: 760 NECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801
+ + A + TV+ + H+++ + + DRILVL+ G++ + +
Sbjct: 179 QKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 3e-31
Identities = 73/237 (30%), Positives = 126/237 (53%), Gaps = 17/237 (7%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
++ ++ NF++ P L G+NL ++ + +A+ G GAGKS+L +L SG +
Sbjct: 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALD 699
L G +A V Q + + S+ +NI YG+P D+ A A A
Sbjct: 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHA-H 456
Query: 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
+ I+ G T +G+RG+ LSGGQ+QRI +ARA+ DA I L D+ SA+DA + L
Sbjct: 457 EFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES-EQLV 515
Query: 760 NECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
+ + ++ +T +++ H++ + + DRI+V++ G+I G + EL+ G + +L
Sbjct: 516 QQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLA 572
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-30
Identities = 57/130 (43%), Positives = 81/130 (62%), Gaps = 1/130 (0%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
G++ ++ L +Y VL+ I+ + S G RVG++GRTGSGK+TL+SA RL+ G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKT 1333
I IDGV S+ L+ R +IPQ+ +F G+ R NLDP G +SD+EIWK E+ LK+
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1334 TISSLPNKLD 1343
I P +LD
Sbjct: 120 VIEQFPGQLD 129
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 5e-30
Identities = 40/96 (41%), Positives = 60/96 (62%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + + Y VLK ++ T G +V +VG +GSGK+TL+ L RL +P G IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
IDGVD+ + L+ LR ++ +PQ+P LF G++R N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI 96
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-29
Identities = 127/515 (24%), Positives = 219/515 (42%), Gaps = 76/515 (14%)
Query: 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYI-AVDAYR--------------- 387
R RM ++L AV+ + L+L +++STG++ + + R
Sbjct: 202 RLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAMGISQIRRILSGSTLTTLLSGI 261
Query: 388 MGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQ 445
F+ +W LAL +A+ + + + L+ GLL V + L
Sbjct: 262 FALLNLGLMFYYSWKLAL---VAVALALVAIAV--------TLVLGLLQVRKERRLL--- 307
Query: 446 SEFMIAQDERLRS-TSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT 504
++ T +++N + +++ E + + ++ K AQ + T
Sbjct: 308 -----ELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362
Query: 505 VIYWMSPTIISSVIFLGCA-LTGSAPLNA------STIFTVLATLRSMGEPVRMIPEALS 557
V + P + S+ +F L G A L+ +T F + ++ + + L+
Sbjct: 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFG--SFSGAVTQLSNTLISILA 420
Query: 558 IMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVN 617
++ ++R L L D + K ++++ F + P+ L V+
Sbjct: 421 VIPL----WERAKPIL--EALPEVDEAKTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVS 473
Query: 618 LDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-------------SIAYV 663
L I+ + +A+ G G+GKS+LL +LG E P+ SG+V G + V
Sbjct: 474 LQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE-SGSVFYDGQDLAGLDVQAVRRQLGVV 532
Query: 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
Q + SGSI +NI G P+ +A + L +DI G T I + G LSGG
Sbjct: 533 LQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGG 592
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEF 781
Q+QR+ +ARA+ I LFD+ SA+D T A V +LE K T I++ H++
Sbjct: 593 QRQRLLIARALVRKPRILLFDEATSALDNRTQAI-----VSESLERLKVTRIVIAHRLST 647
Query: 782 LSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
+ DRI VL+ G++ Q G Y EL+ F QL
Sbjct: 648 IRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLA 682
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 7e-29
Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 15/218 (6%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659
L ++L IK + + + G G+GKS+L I +G V + G
Sbjct: 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQ 77
Query: 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
+ V Q + + + SIRDNI P M R +A K I+ G T +G++G
Sbjct: 78 VGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGA 137
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LSGGQ+QRI +ARA+ ++ I +FD+ SA+D + + + +TVI++ H+
Sbjct: 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN-MHDICAGRTVIIIAHR 196
Query: 779 VEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
+ + DRI+V+E G+I + G++ ELL + L
Sbjct: 197 LSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-28
Identities = 77/262 (29%), Positives = 127/262 (48%), Gaps = 18/262 (6%)
Query: 559 MIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNL 618
+ ++ R+N L ++ + + L + + + ++ P PTLRG++
Sbjct: 284 FSGARQAYKRLNELLANYPSRDP---AMPLPEPEGHLSVENVTIV-PPGGKKPTLRGISF 339
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQ 665
++ + +A+ G G+GKS+L I+G P SG+V L G I Y+ Q
Sbjct: 340 SLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399
Query: 666 TSWIQSGSIRDNIL-YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724
+ G++ +NI +G+ D + +A K + + I G T IG G LSGGQ
Sbjct: 400 DVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQ 459
Query: 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784
+QRI LARA+Y D + + D+P S +D L N TV+++TH+ L
Sbjct: 460 RQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGC 519
Query: 785 VDRILVLEGGQITQSGNYQELL 806
VD+ILVL+ G+I + G E+L
Sbjct: 520 VDKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 50/143 (34%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
G IE + Y P VLK I + G V +VG TG+GKTTLI+ L R +P G
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK-CQLK 1332
ILIDG+DI + K LR + ++ Q+ LF G++ N+ + DE K
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 1333 TTISSLPNKLDS----SGKLFSA 1351
I LPN D+ +G S
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQ 142
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-28
Identities = 88/472 (18%), Positives = 171/472 (36%), Gaps = 62/472 (13%)
Query: 906 VLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFV-----------YF 954
VLA + + A + A + + G V + V +
Sbjct: 17 VLAGVAMILVAATESTLAAL---LKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFV 73
Query: 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIV 1014
++ + + K + + P+ FFD P G +L+R++ D + + +
Sbjct: 74 STYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFI 133
Query: 1015 FVAASGTELLAIIGIMTFVTWQV--LVVAIFAMVAVRFVQRYYIATARELIRINGTTKAP 1072
+ ++ + ++ + +WQ+ +VV + +++ + R R + + +
Sbjct: 134 VLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLS--ILMRRVSKRLRRISKEIQNSMGQ 191
Query: 1073 VMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVE----AL 1128
V ET QG ++ F + + + + L +++
Sbjct: 192 VTTVAEETLQGYRVVKLFGGQAYETRRFDAV-----------SNRNRRLAMKMTSAGSIS 240
Query: 1129 QNLTLFTAA------LFLVLIPR--GYVAPG-LVGLSLSYAF------TLTGTQVFLSRW 1173
+T A+ LF+ L G + G + +LT + R
Sbjct: 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRG 300
Query: 1174 YCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVL 1233
+ + E + + PPE R +G +E R + RY L
Sbjct: 301 -------LAAAESLFTLLDSPPEKD---TGTRAIER--ARGDVEFRNVTFRYPGRDRPAL 348
Query: 1234 KGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293
I+ G V +VGR+GSGK+TL++ + R EP G IL+DG D+ L LR ++
Sbjct: 349 DSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQV 408
Query: 1294 SIIPQEPTLFRGSVRTNL--DPLGLYSDDEIWKALEKCQLKTTISSLPNKLD 1343
+++ Q+ LF ++ N+ EI +AL + + LP LD
Sbjct: 409 ALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLD 460
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 2e-28
Identities = 69/215 (32%), Positives = 112/215 (52%), Gaps = 14/215 (6%)
Query: 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658
P P L+G++ ++ + + + G G+GKS+L ++G P SG+V L G
Sbjct: 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWD 404
Query: 659 ------SIAYVSQTSWIQSGSIRDNIL-YGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
I Y+ Q + G+I +NI +G+ D + +A + + + I G T
Sbjct: 405 REQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDT 464
Query: 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKT 771
IG+ G LSGGQ+QRI LARA+Y D + + D+P S +D+ A L + A T
Sbjct: 465 RIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGT 524
Query: 772 VILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
V+++ H+ L+ VD+ILVL+ G+I G +E+L
Sbjct: 525 VVVIAHRPSALASVDKILVLQDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 6e-28
Identities = 103/455 (22%), Positives = 195/455 (42%), Gaps = 32/455 (7%)
Query: 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFL 407
R AL V VY++ + + GR++ G+++ + D + + + +AL +
Sbjct: 83 RSLGALRVRVYERLARQALAGRRRLRRGDLLGRLGADVDALQDLYVRVIVPAGVALVVGA 142
Query: 408 AIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQD--ERLRSTSEILNN 465
A V+ + A L L+ P + +E +A+ E ++ L+
Sbjct: 143 AAVAAIAVLSVPAALILAAGLLLAGFVAPLVSLRAARAAEQALARLRGELAAQLTDALDG 202
Query: 466 MKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALT 525
+ + +E + L+ A+ R A T + + + + LG
Sbjct: 203 AAELVASGALPAALAQVEEADRE----LTRAERRAAAATALGAALTLLAAGLAVLGALWA 258
Query: 526 GSAPLN----ASTIFTVLATLR-SMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN 580
G + A VL L + E +P A + +V+ + +RI +LD
Sbjct: 259 GGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVE-VLDAAGPV 317
Query: 581 DDV---RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637
+ ++ ++++++ + + A P L GV+LD+ +++A+ G G+GKS
Sbjct: 318 AEGSAPAAGAVGLGKPTLELRDLSAGYPG--APPVLDGVSLDLPPGERVAILGPSGSGKS 375
Query: 638 SLLYAILGEIPKISGTVNLYGS-------------IAYVSQTSWIQSGSIRDNILYGKP- 683
+LL + G + + G V L G ++ +Q + + ++R+N+ +P
Sbjct: 376 TLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPD 435
Query: 684 MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743
A++ L + G T +G+ G LSGG++QR+ LARA+ DA I L
Sbjct: 436 ATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLL 495
Query: 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
D+P +DA TA L E ++AAL +TV+L+TH
Sbjct: 496 DEPTEHLDAETADELL-EDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 9e-28
Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 45/201 (22%)
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655
+I+ +F + L V+L +K + +A+ G G+GKS+LL AI G + SG +
Sbjct: 1 EIENLSFRYG---GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 656 LYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
+ G + + +R I Y + Q
Sbjct: 58 IDGK-----DIAKLPLEELRRRIGY--------------------------------VPQ 80
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
LSGGQ+QR+ LARA+ + D+ L D+P S +D + L A E +TVI+V
Sbjct: 81 ----LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIV 136
Query: 776 THQVEFLSEV-DRILVLEGGQ 795
TH E DR++VL+ G+
Sbjct: 137 THDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 9e-28
Identities = 71/208 (34%), Positives = 105/208 (50%), Gaps = 36/208 (17%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAY 662
P L V+ ++K + +A+ G GAGKS+LL AILG + SG++ ++G I Y
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGY 72
Query: 663 VSQTSWIQSG---SIRDNI---LYGKPMDKARYDKAIKAC---ALDKDINNFDHGDLTEI 713
V Q I S+RD + LYG R KA KA AL++ L+E+
Sbjct: 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALER-------VGLSEL 125
Query: 714 GQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--- 769
R + LSGGQ+QR+ LARA+ D D+ L D+PF+ VD T + L +
Sbjct: 126 ADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDI-----YELLRELRR 180
Query: 770 --KTVILVTHQVEFLSE-VDRILVLEGG 794
T+++VTH + + E DR+L+L
Sbjct: 181 EGMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 64/205 (31%), Positives = 98/205 (47%), Gaps = 41/205 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVS 664
L ++L ++ + +A+ G G GKS+LL I G SG V + G YV
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79
Query: 665 QTS----WIQSGSIRDNILYG-------KPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
Q W+ ++ DN+ G K + R ++ ++ L N + H
Sbjct: 80 QQDALLPWL---TVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPH------ 130
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KT 771
LSGG +QR+ LARA+ D D+ L D+PFSA+DA T L E ++ + KT
Sbjct: 131 -----QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEE-LLDIWRETGKT 184
Query: 772 VILVTHQVE---FLSEVDRILVLEG 793
V+LVTH ++ FL+ DR++VL
Sbjct: 185 VLLVTHDIDEAVFLA--DRVVVLSA 207
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-27
Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 52/212 (24%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS- 659
+FS+ PE L+ ++L++K +KIA+ G G+GKS+LL + G++ G + L G
Sbjct: 7 SFSY-PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVP 65
Query: 660 -----------IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHG 708
I+ ++Q ++ ++R+N+
Sbjct: 66 VSDLEKALSSLISVLNQRPYLFDTTLRNNL------------------------------ 95
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
G SGG++QR+ LAR + DA I L D+P +D T L + L+
Sbjct: 96 --------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SLIFEVLK 146
Query: 769 KKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
KT+I +TH + + +D+IL LE G+I G
Sbjct: 147 DKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 3e-27
Identities = 71/217 (32%), Positives = 112/217 (51%), Gaps = 29/217 (13%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SI 660
P L ++L ++ + A+ G GAGKS+LL AILG + SG + ++G I
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRI 77
Query: 661 AYVSQTSWIQSG---SIRDNIL---YGKPMDKARYDKAIKACALD--KDINNFDHGDLTE 712
YV Q S + +++D +L YGK R +K K + + + D D +
Sbjct: 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-RQ 136
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKK 770
IG+ LSGGQKQR+ LARA+ + D+ L D+PF+ VD +++ ++ L E K
Sbjct: 137 IGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD--LLKELRQEGK 190
Query: 771 TVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806
TV++VTH + + DR++ L I SG +E+L
Sbjct: 191 TVLMVTHDLGLVMAYFDRVICLNRHLIA-SGPPEEVL 226
|
Length = 254 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 5e-27
Identities = 105/428 (24%), Positives = 182/428 (42%), Gaps = 57/428 (13%)
Query: 945 STASAVFVYFR----SFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSS 1000
S AS+V R ++ A + L+ + F S+ + + FFD G + +RLSS
Sbjct: 211 SIASSVSAGLRGGSFNYTMARINLRIREDLFR----SLLRQDLGFFDENKTGELTSRLSS 266
Query: 1001 DLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQR----YYI 1056
D + + ++ + + LL ++G M +++ ++ +V + + V ++ Y
Sbjct: 267 DTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQ 326
Query: 1057 ATARELIRINGTTKAPVMNYTAETSQ-------GVVTIRAF----NMVDRFFQ--NYLKL 1103
+ E + A+ +Q G+ T+R+F RF +
Sbjct: 327 LLSEE-----------LQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQ 375
Query: 1104 V----DIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSY 1159
+ + + + T V+ LI + + LVL G V+ G + L Y
Sbjct: 376 LNKRKALAYAGYLWTTSVLGMLIQ-------VLVLYYGGQLVL--TGKVSSGNLVSFLLY 426
Query: 1160 AFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELR 1219
L LS Y + + + E++ +++ P P P +G IE +
Sbjct: 427 QEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT-LAPL---NLEGLIEFQ 482
Query: 1220 QLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILID 1277
+ Y RP+ P VLKG+T T G V +VG +GSGK+T+ + L L +P GG +L+D
Sbjct: 483 DVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD 541
Query: 1278 GVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD-PLGLYSDDEIWKALEKCQLKTTIS 1336
GV + L +++++ QEP LF GSVR N+ L D+EI A + I
Sbjct: 542 GVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 1337 SLPNKLDS 1344
PN D+
Sbjct: 602 EFPNGYDT 609
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 6/132 (4%)
Query: 1216 IELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
IE + + RY RP+ P +LKG++ T G V +VG +G GK+T++S L R +P G
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYS--DDEIWKALEKCQL 1331
IL+DGVDI + L+ LR ++ ++ QEP LF G++ N+ G D+E+ +A +K +
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIR-YGKPDATDEEVEEAAKKANI 118
Query: 1332 KTTISSLPNKLD 1343
I SLP+ D
Sbjct: 119 HDFIMSLPDGYD 130
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 1e-26
Identities = 97/354 (27%), Positives = 161/354 (45%), Gaps = 48/354 (13%)
Query: 1008 DIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRING 1067
D+PF+++F+ ++AIIG + W LV ++ +QR A E +R
Sbjct: 269 DLPFALLFLL-----VIAIIG--GPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMR-ES 320
Query: 1068 TTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLV----DIDASLFFHTNGVMEWLIL 1123
+ V+ E+ G+ TI+A N RF + + + V F +N +
Sbjct: 321 AQRNAVL---VESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNF--- 374
Query: 1124 RVEALQNLTLFTAALFLV---LIPRGYVAPG-LVGLSLSYAFTLTG------TQV--FLS 1171
+ +Q L + A+ +V LI G + G L+ + L+G Q+ L+
Sbjct: 375 -AQFIQQLV--SVAIVVVGVYLISDGELTMGGLIACVM-----LSGRALAPLGQLAGLLT 426
Query: 1172 RWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPL 1231
R+ +++ + + M +P E P E R +G IE R + Y
Sbjct: 427 RYQ----QAKTALQSLDELMQLPVERP---EGTRFLHRPRLQGEIEFRNVSFAYPGQETP 479
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
L ++ T G +V ++GR GSGK+TL+ L L +P GS+L+DGVDI + DLR
Sbjct: 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR 539
Query: 1292 KLSIIPQEPTLFRGSVRTNLDPLG--LYSDDEIWKALEKCQLKTTISSLPNKLD 1343
+ +PQ+P LF G++R N+ LG D+EI +A E + + P+ LD
Sbjct: 540 NIGYVPQDPRLFYGTLRDNIA-LGAPYADDEEILRAAELAGVTEFVRRHPDGLD 592
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 62/218 (28%), Positives = 110/218 (50%), Gaps = 19/218 (8%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
VK Q F++ L+ V+ + + A+ G G+GKS+++ + G V
Sbjct: 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71
Query: 655 NLYGS-------------IAYVSQTSWIQSGSIRDNILYG---KPMDKARYDKAIKACAL 698
L G ++ V Q + + S++DNI YG + + + A KA A
Sbjct: 72 LLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVK-EAAQKAHA- 129
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
I+ G TE+G++G LSGGQKQR+ +ARA+ + + + D+ SA+DA + +
Sbjct: 130 HSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189
Query: 759 FNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796
+ + E++TV+++ H++ + D+ILVL+GG+I
Sbjct: 190 -QQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-26
Identities = 118/454 (25%), Positives = 205/454 (45%), Gaps = 72/454 (15%)
Query: 394 WFHLTWSLALQLF---LAIGVLFGVV--GLGALPGLVLFLICGLLNVPFAKILQKCQSEF 448
+F +LAL L L + +L ++ LG PG L + V + LQ Q+E
Sbjct: 157 FFD--LTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQG-QAEL 213
Query: 449 MI-AQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES-RREKEFKWLSEAQLRKAYG--- 503
+ ++R R +L+ E++ + + RR+ LS+A + A G
Sbjct: 214 TLFGAEDRYRQ-----------QLEQTEQQ---WLAAQRRQANLTGLSQALMILANGLTV 259
Query: 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVK 563
++ W++ + L A +F LA ++ P + A + QV
Sbjct: 260 VLMLWLAAGGVGGN-------AQPGALIALFVFAALAAFEALM-P---VAGAFQHLGQVI 308
Query: 564 VSFDRINAFLL---DHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620
S RIN + + S+ + +F++ P+ P L+G++L I
Sbjct: 309 ASARRINEITEQKPEVTFPTTS----TAAADQVSLTLNNVSFTY-PDQPQPVLKGLSLQI 363
Query: 621 KWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGT-------VNLYGSIAYVSQT 666
K +K+A+ G G GKS+LL + GEI ++G L +I+ VSQ
Sbjct: 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI-LLNGQPIADYSEAALRQAISVVSQR 422
Query: 667 SWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725
+ S ++RDN+L P + ++ L+K + + D G +G+ G LSGG++
Sbjct: 423 VHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQ 481
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVILVTHQVEF 781
+R+ +ARA+ +DA + L D+P +DA T ++ L + KTV+++TH++
Sbjct: 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQ-----ILELLAEHAQNKTVLMITHRLTG 536
Query: 782 LSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
L + DRI V++ GQI + G +QELL + QL
Sbjct: 537 LEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQL 570
|
Length = 574 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-26
Identities = 72/228 (31%), Positives = 118/228 (51%), Gaps = 27/228 (11%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL--------GEIPKISG----TVNLYG 658
+ V+ + K Q +A+ G GAGKS+L+ +L G I I G TV
Sbjct: 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLI-NLLQRVFDPQSGRI-LIDGTDIRTVTRAS 406
Query: 659 ---SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALD---KDINNFDHGDL 710
+IA V Q + + + SI DNI G+P D+ A +A A D + + +D
Sbjct: 407 LRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYD---- 462
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
T +G+RG LSGG++QR+ +ARA+ D I + D+ SA+D T A + + ++ +
Sbjct: 463 TVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKV-KAALDELMKGR 521
Query: 771 TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
T ++ H++ + DRILV + G++ +SG++ EL+ G F L+ A
Sbjct: 522 TTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRA 569
|
Length = 588 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 107 bits (271), Expect = 2e-26
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 31/215 (14%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN------ 655
FS+ P+ A P L ++L IK + + + G G+GKS+LL + G + SG V
Sbjct: 7 FSY-PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDL 65
Query: 656 -------LYGSIAYVSQ--TSWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDIN 703
L + V Q ++ + + +G + + ++ ++ +
Sbjct: 66 TKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE 125
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ LSGGQKQR+ +A + D DI L D+P + +D L +
Sbjct: 126 GLRD-------RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE--L 176
Query: 764 MAAL--EKKTVILVTHQVEFLSEV-DRILVLEGGQ 795
+ L E KT+I+VTH ++ L E+ DR++VLE G+
Sbjct: 177 LKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 8e-26
Identities = 60/204 (29%), Positives = 86/204 (42%), Gaps = 54/204 (26%)
Query: 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------ 659
P P LR V+ I+ + +A+ G G+GKS+L ILG + SG V L G+
Sbjct: 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD 70
Query: 660 -------IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+ Y+ Q + SGSI +NIL
Sbjct: 71 PNELGDHVGYLPQDDELFSGSIAENIL--------------------------------- 97
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV 772
SGGQ+QR+ LARA+Y + I + D+P S +D L T
Sbjct: 98 --------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATR 149
Query: 773 ILVTHQVEFLSEVDRILVLEGGQI 796
I++ H+ E L+ DRILVLE G++
Sbjct: 150 IVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 8e-26
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 29/200 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVS 664
L +NL ++ + +A+ G G GKS+LL I G SG V L G I YV
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVF 78
Query: 665 QTS----WIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI--GQRGL 718
Q W+ ++ DN+ G ++ KA + + + Q
Sbjct: 79 QEDALLPWL---TVLDNVALG--LELRGKSKAEARERAKELLELVGLAGFEDKYPHQ--- 130
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTH 777
LSGG +QR+ +ARA+ + L D+PF A+DA T L +E + + +KTV+LVTH
Sbjct: 131 -LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTH 189
Query: 778 QVE---FLSEVDRILVLEGG 794
V+ +L+ DR++VL
Sbjct: 190 DVDEAVYLA--DRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-25
Identities = 118/471 (25%), Positives = 190/471 (40%), Gaps = 76/471 (16%)
Query: 917 AAATYWLAYAI-----------QIPKITSGI--LIGVYAGVSTASAVFVYFRSFFAAHLG 963
AAAT L YA+ + L+ V ++ +A R + LG
Sbjct: 31 AAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTA----ARFYLVTWLG 86
Query: 964 LKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023
+ + FFD G +++RL++D ++L I S+ +
Sbjct: 87 ERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRN---A 143
Query: 1024 LAIIG--IMTFVT------WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMN 1075
L IG IM F+T +L V + + + F +R R+L R + A +
Sbjct: 144 LMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRR-----VRKLSRESQDRIADAGS 198
Query: 1076 YTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME--WLILRVEALQNLTL 1133
Y ET + T++AF D + S F G +E + R L
Sbjct: 199 YAGETLGAIRTVQAFGHEDA-----------ERSRF---GGAVEKAYEAARQRIRTRALL 244
Query: 1134 FTAALFLVL-------------IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANY 1180
+ LV + G ++ G +G + YA + G+ LS + L
Sbjct: 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRA 304
Query: 1181 IISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRY--RPNAPLVLKGITC 1238
+ ER+ + + P+ A K P P +G IE Q+ Y RP+ P L G+
Sbjct: 305 AGAAERLIELLQAEPDIKAPAHPKTLPV--PLRGEIEFEQVNFAYPARPDQP-ALDGLNL 361
Query: 1239 TFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQ 1298
T G V +VG +G+GK+TL L R +P G IL+DGVD+ + +LR +++++PQ
Sbjct: 362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQ 421
Query: 1299 EPTLFRGSVRTNL-----DPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS 1344
+P LF SV N+ D +D+E+ A IS+LP D+
Sbjct: 422 DPVLFAASVMENIRYGRPDA----TDEEVEAAARAAHAHEFISALPEGYDT 468
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-25
Identities = 92/381 (24%), Positives = 150/381 (39%), Gaps = 37/381 (9%)
Query: 992 GRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQV-LVVAIFAMVAVRF 1050
G +L RL +D+ L IV + A + + ++ L++A ++A
Sbjct: 110 GDLLGRLGADVDALQDLYVRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGLLLAGFV 169
Query: 1051 VQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASL 1110
+ AR + + + + G + A + + D L
Sbjct: 170 APLVSLRAARAAEQALARLRGELAAQLTDALDGAAELVASGALPAALAQV---EEADREL 226
Query: 1111 FFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPG-----------LVGLSLSY 1159
L AL L A L + VA G L+ L+
Sbjct: 227 TRAERRAAAATALG-AALTLLAAGLAVLGALWAGGPAVADGRLAPVTLAVLVLLPLAAFE 285
Query: 1160 AFT-LTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP-AIVEDKRPPSSWPFKGRIE 1217
AF L L+R + ERI + + P A + K +E
Sbjct: 286 AFAALPAAAQQLTR-------VRAAAERIVEV--LDAAGPVAEGSAPAAGAVGLGKPTLE 336
Query: 1218 LRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILID 1277
LR L Y P AP VL G++ G RV ++G +GSGK+TL++ L L++P G + +D
Sbjct: 337 LRDLSAGY-PGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLD 395
Query: 1278 GVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL---DPLGLYSDDEIWKALEKCQLKTT 1334
GV + S+ ++R ++S+ Q+ LF +VR NL P +D+E+W ALE+ L
Sbjct: 396 GVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDA--TDEELWAALERVGLADW 453
Query: 1335 ISSLPNKLDSS----GKLFSA 1351
+ +LP+ LD+ G S
Sbjct: 454 LRALPDGLDTVLGEGGARLSG 474
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 27/202 (13%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIA 661
L ++LD+ + IA+ G GAGK++L + G I + SG++ L G SI
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG 74
Query: 662 YVSQTSWIQ--SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
YV Q Q + S+R+ +L G K +A + KD++ + + + L+
Sbjct: 75 YVMQDVDYQLFTDSVREELLLG---LKELDAGNEQAETVLKDLDLYALKE-----RHPLS 126
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA---ATLFNECVMAALEKKTVILVT 776
LSGGQKQR+ +A A+ + D+ +FD+P S +D L E A + K VI++T
Sbjct: 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL---AAQGKAVIVIT 183
Query: 777 HQVEFLSEV-DRILVLEGGQIT 797
H EFL++V DR+L+L G I
Sbjct: 184 HDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 3e-25
Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 21/238 (8%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
++ Q+ +FS+ +P L+G+ + + +A+ G G+GKS++ + G V
Sbjct: 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYG---KPMDKARYDKAIKACAL 698
L G +A V Q + SGS+R+NI YG P ++ A KA
Sbjct: 539 LLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIM--AAAKAANA 596
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
I F +G TE+G++G LSGGQKQRI +ARA+ + + D+ SA+DA L
Sbjct: 597 HDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLL 656
Query: 759 FNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
+ +TV+L+ H++ + D+ILVL+ G + + G +++L+ ++ LV
Sbjct: 657 QES---RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 4e-25
Identities = 55/219 (25%), Positives = 102/219 (46%), Gaps = 39/219 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660
L GV+ +++ + + G GAGK++LL + G + SG + + G I
Sbjct: 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80
Query: 661 AYVSQT----SWIQSGSIRDNI-----LYGKP--MDKARYDKAIKACALDKDINNFDHGD 709
YV Q + ++R+N+ LYG + R ++ ++ L+ N
Sbjct: 81 GYVPQEPSLYPEL---TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKAN------ 131
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALE 768
++ LSGG KQR+ +A A+ +D ++ + D+P S +D + ++ +A
Sbjct: 132 -----KKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEG 186
Query: 769 KKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T++L TH +E E+ DR+++L G+I G +EL
Sbjct: 187 GVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELK 225
|
Length = 293 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 1/131 (0%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
GRIE R + Y L ++ T G +V ++GR GSGK+TL+ L L +P GS
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDE-IWKALEKCQLK 1332
+L+DG DI + DLR + +PQ+ TLF G++R N+ +DDE I +A E +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120
Query: 1333 TTISSLPNKLD 1343
++ PN LD
Sbjct: 121 DFVNKHPNGLD 131
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-24
Identities = 80/370 (21%), Positives = 147/370 (39%), Gaps = 35/370 (9%)
Query: 992 GRILTRLSSDLSILDFDI-------PFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFA 1044
G +L RL +D+ LD ++ + + A T L+ I + + ++ +
Sbjct: 115 GDLLNRLVADVDALD-NLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALL--LGLILLLL 171
Query: 1045 MVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLV 1104
++ + + + +A + + + QG + F D +
Sbjct: 172 LLIIPTLFYRAGRKFGAHLAQG---RAALRSQFTDWVQGQAELLIFGAEDAYRTALEA-- 226
Query: 1105 DIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV----LIPRGYVAPGLVGLSLSYA 1160
+AS + L L + L+ + G +A L+L
Sbjct: 227 -TEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVI 285
Query: 1161 FTLTGTQVFLSRWYCY-LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELR 1219
F L+ L I S R+ I + P + ++ +ELR
Sbjct: 286 FAALEAFEPLAPGAFQHLGQVIASARRLND---ILDQKPEVTFPDEQTATTGQA--LELR 340
Query: 1220 QLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279
+ Y LK T ++G +V ++GR+GSGK+TL+ L +P GSI ++GV
Sbjct: 341 NVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGV 400
Query: 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL-----DPLGLYSDDEIWKALEKCQLKTT 1334
+I S+ + LR +S++ Q LF G++R NL D SD+E+W AL++ L+
Sbjct: 401 EIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDA----SDEELWAALQQVGLEKL 456
Query: 1335 ISSLPNKLDS 1344
+ S P+ L++
Sbjct: 457 LESAPDGLNT 466
|
Length = 573 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 3e-24
Identities = 74/239 (30%), Positives = 127/239 (53%), Gaps = 24/239 (10%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSL------LYAIL-GEI 647
V+++ F + P L P + +L ++ Q++A+ G G+GKS++ LY GEI
Sbjct: 478 VELRNITFGYSP-LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEI 536
Query: 648 -----PK--ISGTVNLYGSIAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKACALD 699
P+ I V L S+A V Q ++ G++RDN+ L+ + A +A K A+
Sbjct: 537 LFDGIPREEIPREV-LANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIH 595
Query: 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
I + G E+ + G NLSGGQ+QR+++ARA+ + I + D+ SA+D T
Sbjct: 596 DVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKI-- 653
Query: 760 NECVMAALEKK--TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
+ L ++ T I+V H++ + + D I+VLE G++ Q G ++EL G A+ +L+
Sbjct: 654 ---IDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 6e-24
Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 42/217 (19%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658
+ L ++L ++ + +A+ G G GK++LL I G SG + + G
Sbjct: 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR 72
Query: 659 SIAYVSQT----SWIQSGSIRDNILYG-------KPMDKARYDKAIKACALDKDINNFDH 707
+I V Q + ++ +NI +G K +AR + ++ L+ +N + H
Sbjct: 73 NIGMVFQDYALFPHL---TVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPH 129
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
LSGGQ+QR+ LARA+ + + L D+P SA+DA L E + L
Sbjct: 130 E-----------LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE--LKEL 176
Query: 768 EKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSG 800
+++ T I VTH Q E L+ DRI V+ G+I Q G
Sbjct: 177 QRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 8e-24
Identities = 83/266 (31%), Positives = 141/266 (53%), Gaps = 34/266 (12%)
Query: 573 LLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSV 632
+LD E D+ +R ++++ ++ + F++ P +P LR +N I + +A+ G
Sbjct: 321 ILDLEQEKDEGKR-VIERAKGDIEFRNVTFTY-PGKEVPALRNINFKIPAGKTVALVGRS 378
Query: 633 GAGKS---SLL---YAIL-GEIP---------KISGTVNLYGSIAYVSQTSWIQSGSIRD 676
G+GKS +LL Y I GEI ++ +L +A VSQ + + +I +
Sbjct: 379 GSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLA---SLRNQVALVSQNVHLFNDTIAN 435
Query: 677 NILYGKPMDKARYD--KAIK-ACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733
NI Y + +R +A + A A+D IN D+G T IG+ G+ LSGGQ+QRI +ARA
Sbjct: 436 NIAYARTEQYSREQIEEAARMAYAMDF-INKMDNGLDTVIGENGVLLSGGQRQRIAIARA 494
Query: 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVILVTHQVEFLSEVDRIL 789
+ D+ I + D+ SA+D T + AAL++ +T +++ H++ + + D IL
Sbjct: 495 LLRDSPILILDEATSALD-----TESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIL 549
Query: 790 VLEGGQITQSGNYQELLLAGTAFEQL 815
V+E G+I + G + ELL + QL
Sbjct: 550 VVEDGEIVERGTHAELLAQNGVYAQL 575
|
Length = 582 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 3e-23
Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 39/214 (18%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-SGTVNLYG---------- 658
+ L+GV+L I+ + +A+ G G+GKS+LL ILG + + SG V + G
Sbjct: 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLL-NILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 659 -------SIAYVSQT-SWIQSGSIRDNILYG-------KPMDKARYDKAIKACALDKDIN 703
I +V Q+ + + + +N+ K + R ++ ++ L +N
Sbjct: 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN 135
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE-C 762
++ LSGGQ+QR+ +ARA+ ND I L D+P +D+ T +
Sbjct: 136 HYPS-----------ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLR 184
Query: 763 VMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796
+ T+++VTH E DRI+ L G+I
Sbjct: 185 ELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-23
Identities = 81/451 (17%), Positives = 158/451 (35%), Gaps = 65/451 (14%)
Query: 917 AAATYWLAYAIQ-----IPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFF 971
A LA + + L+ + A + R K +
Sbjct: 17 IAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLR 76
Query: 972 SGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMT 1031
+ + K F P G T + L+ P+ ++ + + I+
Sbjct: 77 QLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLE---PYYARYLPQMFLSAIVPLLILI 133
Query: 1032 FVTWQVLVVAIFAMVAVRFVQRYYIAT---ARELIRINGTTKAPVMNYTAETSQGVVTIR 1088
+ + A+ ++ + + I A++ + A + + + +G+ T+R
Sbjct: 134 AIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLR 193
Query: 1089 AFNMVDRFFQNYLKLVDIDASLF-----------FHTNGVMEWLI------------LRV 1125
AF + + + D+ F F ++ V+E+ R+
Sbjct: 194 AFGRTEA----TEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRL 249
Query: 1126 EALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVE 1185
+LTLF L+L P + +G F A + +
Sbjct: 250 LGEGDLTLFAGLFVLILAPEFFQPLRDLG----SFFHAA-------------AAGEAAAD 292
Query: 1186 RIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTR 1245
++ + P P ++ + I L L RY P+ L + T G
Sbjct: 293 KLFTLLESPVATPG--SGEKAEVANEPPIEISLENLSFRY-PDGKPALSDLNLTIKAGQL 349
Query: 1246 VGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG 1305
+VG +G+GK+TL++ L + P G I ++G+D+ + + R ++S + Q P LF G
Sbjct: 350 TALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG 409
Query: 1306 SVRTNLDPLGLY----SDDEIWKALEKCQLK 1332
++R N + L SD+EI AL++ L
Sbjct: 410 TIREN---ILLARPDASDEEIIAALDQAGLL 437
|
Length = 559 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 1e-22
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E + + RY + P VL+ I+ G V +VG +GSGK+TL++ + R + G IL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY-----SDDEIWKALEKCQ 1330
IDG D+ L LR ++ ++ Q+ LF +V N+ Y + +E+ +A
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENI----AYGRPGATREEVEEAARAAN 116
Query: 1331 LKTTISSLPNKLDS 1344
I LP D+
Sbjct: 117 AHEFIMELPEGYDT 130
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-22
Identities = 104/432 (24%), Positives = 177/432 (40%), Gaps = 44/432 (10%)
Query: 929 IPKITSGILIGVYAG---VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLF 985
IP +L+ + + +A F +S L + + + + + + P+ F
Sbjct: 167 IPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSF 226
Query: 986 FDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAM 1045
F G + +R I + S + SG L +G+M + +W++ +VA+ A+
Sbjct: 227 FRQYSTGDLASRAMGISQIRRI-LSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAV-AL 284
Query: 1046 VAVR--------FVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097
V +Q R L+ ++G + T + G+ +R +R F
Sbjct: 285 ALVAIAVTLVLGLLQVRK---ERRLLELSGK----ISGLTVQLINGISKLRVAGAENRAF 337
Query: 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGL-VG-- 1154
+ KL L + L + L L +AALF I GL +G
Sbjct: 338 ARWAKLFSRQRKLELSAQRIENLLTVFNAVLP--VLTSAALFAAAI-SLLGGAGLSLGSF 394
Query: 1155 LSLSYAFTLTGTQVFLSRWYCYLANYIISV-------ERIKQFMHIPPEPPAIVEDKRPP 1207
L+ + AF V L+N +IS+ ER K + PE + E K P
Sbjct: 395 LAFNTAFGSFSGAV-TQ-----LSNTLISILAVIPLWERAKPILEALPE---VDEAKTDP 445
Query: 1208 SSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV 1267
G IE+ ++ RYRP+ PL+L ++ G V +VG +GSGK+TL+ L
Sbjct: 446 G--KLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503
Query: 1268 EPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALE 1327
P GS+ DG D+ + ++ +R +L ++ Q L GS+ N+ + DE W+A
Sbjct: 504 TPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAAR 563
Query: 1328 KCQLKTTISSLP 1339
L I ++P
Sbjct: 564 MAGLAEDIRAMP 575
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-22
Identities = 109/399 (27%), Positives = 178/399 (44%), Gaps = 66/399 (16%)
Query: 976 NSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTF--- 1032
++ + P+ FD+ PVG++++R+++D ++ D+ V V A+ A+IG M
Sbjct: 106 DAALRQPLSAFDTQPVGQLISRVTNDTEVIR-DL---YVTVVATVLRSAALIGAMLVAMF 161
Query: 1033 -VTWQVLVVA--IFAMVAVRFV--QRYYIATARELIRINGTTKAPVMNYTA-------ET 1080
+ W++ +VA IF V V V QRY R V Y A E
Sbjct: 162 SLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRR-----------VRAYLADINDGFNEV 210
Query: 1081 SQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFL 1140
G+ I+ F RF + ++ + S H M+ L L L+ L +AL L
Sbjct: 211 INGMSVIQQFRQQARFGE---RMGEASRS---HYMARMQTLRLDGFLLRPLLSLFSALIL 264
Query: 1141 --VLIPRGYVAPGLVGLSLSYAF------------TLTGTQVFLSRWYCYLANYIISVER 1186
+L+ G+ A G + + + YAF LT Q L + +++ ER
Sbjct: 265 CGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQ-------AVVAGER 317
Query: 1187 IKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRV 1246
+ + M P + D RP S GRI++ + YR + VL+ I + V
Sbjct: 318 VFELMDGPRQQYG--NDDRPLQS----GRIDIDNVSFAYRDDNL-VLQNINLSVPSRGFV 370
Query: 1247 GVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGS 1306
+VG TGSGK+TL S L G I +DG + S+ LR ++++ Q+P + +
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADT 430
Query: 1307 VRTNLDPLGL-YSDDEIWKALEKCQLKTTISSLPNKLDS 1344
N+ LG S++++W+ALE QL SLP+ L +
Sbjct: 431 FLANV-TLGRDISEEQVWQALETVQLAELARSLPDGLYT 468
|
Length = 592 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 2e-22
Identities = 44/238 (18%), Positives = 88/238 (36%), Gaps = 1/238 (0%)
Query: 930 PKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDST 989
+ + L + V + + + LG + K F I PM FFD+
Sbjct: 36 ERSSLISLAILLIAVGVLQGLLLQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTN 95
Query: 990 PVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVR 1049
VG + +RL++D+S + + + S ++ +M + W++ +V + + +
Sbjct: 96 SVGELTSRLTNDVSKIRDGLGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLI 155
Query: 1050 FVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDAS 1109
+ R+L R A + E+ G+ T++AF + + Y K ++
Sbjct: 156 LLSAVLAKKLRKLNRKEQKAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEK 215
Query: 1110 LFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGT 1166
+ + L+ A F L+ G ++ G V LS L+G
Sbjct: 216 AGIKKAITAGLSFGITQLISYLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGP 273
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 2e-22
Identities = 54/204 (26%), Positives = 84/204 (41%), Gaps = 54/204 (26%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
L ++L I+ + + + G GAGKS+LL + G + SG + L G
Sbjct: 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK 74
Query: 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
IAYV Q A++ L + R N
Sbjct: 75 IAYVPQ--------------------------ALELL------------GLAHLADRPFN 96
Query: 720 -LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTH 777
LSGG++QR+ LARA+ + I L D+P S +D L +A KTV++V H
Sbjct: 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156
Query: 778 QVEFLSEV-DRILVLEGGQITQSG 800
+ + DR+++L+ G+I G
Sbjct: 157 DLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 3e-22
Identities = 51/273 (18%), Positives = 106/273 (38%), Gaps = 3/273 (1%)
Query: 280 IFIAICALLRTIAVVVGPLLLYAFVN-YSNRGEENLQEGLSIVGCLIITKVVESFTQRHC 338
+ + +L +V PLLL F++ + + +S+ LI V++ +
Sbjct: 2 LIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQGS 61
Query: 339 FFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLT 398
F+ R G R+R L A+ ++ L L +S GE+ + + D ++ +
Sbjct: 62 FYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGL 121
Query: 399 WSLALQLFLAIGVLFGVVGLGALPGLVLFL-ICGLLNVPFAKILQKCQSEFMIAQDERLR 457
+ +L + ++ G L+ L + LL+ AK L+K + A +
Sbjct: 122 FFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGS 181
Query: 458 STSEILNNMKIIKLQSWEEKFKSLI-ESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISS 516
E L+ ++ +K EE ++ + E + +A + +S +
Sbjct: 182 VAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYAL 241
Query: 517 VIFLGCALTGSAPLNASTIFTVLATLRSMGEPV 549
++ G L S L+ T+F L+ + P+
Sbjct: 242 ALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 3e-22
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 47/226 (20%)
Query: 613 LRGVNLDIKWAQKI-AVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQT 666
L+ ++LDI +I A+ G G GKS+LL + L G V L G Y
Sbjct: 16 LKDISLDIP-KGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 667 SWIQ---------------SGSIRDNILYG------KPMD--KARYDKAIKACALDKDIN 703
++ GSI DN+ YG K + R ++A++ AL ++
Sbjct: 75 DVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVK 134
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ H L LSGGQ+QR+ LARA+ N+ ++ L D+P SA+D + A + E +
Sbjct: 135 DRLHA---------LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI--EEL 183
Query: 764 MAALEKK-TVILVTH---QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+A L+K+ T+++VTH Q ++ DR L G++ + G +++
Sbjct: 184 IAELKKEYTIVIVTHNMQQAARVA--DRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 5e-22
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 10/134 (7%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + Y P P VLK ++ T G +V +VG +GSGK+T++ LFR + + GSIL
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY-----SDDEIWKALEKCQ 1330
IDG DI + L LR + ++PQ+ LF ++ N+ Y +D+E+ +A + Q
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNI----RYGRPDATDEEVIEAAKAAQ 115
Query: 1331 LKTTISSLPNKLDS 1344
+ I P+ D+
Sbjct: 116 IHDKIMRFPDGYDT 129
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 5e-22
Identities = 80/290 (27%), Positives = 122/290 (42%), Gaps = 46/290 (15%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------- 659
+ L+ VNLDI+ + + + G G GKS+LL I G SG + + G
Sbjct: 15 SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK 74
Query: 660 --IAYVSQT-SWIQSGSIRDNILYG---KPMDKARYDKAI----KACALDKDINNFDHGD 709
IA V Q + ++ +NI +G + + KA DK + K L+ +N
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNR----- 129
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE-CVMAALE 768
+ L LSGGQ+QR+ LARA+ ++L D+P S +DA + +E +
Sbjct: 130 ------KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL 183
Query: 769 KKTVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQELL----------LAGTAFEQLVN 817
T I VTH QVE ++ DRI+V+ G+I Q G EL G+ +
Sbjct: 184 GTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFIGSPPMNFLK 243
Query: 818 AHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISV 867
A A + + E+V G RPE + G + V
Sbjct: 244 AEVKADGNGLSIPEDKKVALEQVILG--IRPE--HISLSASGIILGTVEV 289
|
Length = 338 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 6e-22
Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 29/218 (13%)
Query: 1131 LTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQF 1190
L L T L+L P Y P L L Y G + + E +
Sbjct: 258 LDLATGLFVLLLAPEFY-LP-LRQLGAQYHARADG---------------VAAAEALFAV 300
Query: 1191 MHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVG 1250
+ P P A + +E + + Y P L+ ++ T G RV +VG
Sbjct: 301 LDAAPRPLAGKAPVTAAPAPS----LEFSGVSVAY-PGRRPALRPVSFTVPPGERVALVG 355
Query: 1251 RTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTN 1310
+G+GK+TL++ L V+P GSI ++GV + R +++ +PQ P LF G++ N
Sbjct: 356 PSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAEN 415
Query: 1311 LDPLGLY----SDDEIWKALEKCQLKTTISSLPNKLDS 1344
+ L SD EI +ALE+ L +++LP LD+
Sbjct: 416 ---IRLARPDASDAEIREALERAGLDEFVAALPQGLDT 450
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 6e-22
Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 24/185 (12%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L V+L+I+ + +A+ G G+GKS+LL I G SG++ + G +
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGE---DLTDLEDELP 72
Query: 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732
+R I + +D F H LT + L LSGGQ+QR+ LAR
Sbjct: 73 PLRRRIGM-----------------VFQDFALFPH--LTVLENIALGLSGGQQQRVALAR 113
Query: 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTHQVEFLSEV-DRILV 790
A+ D D+ L D+P SA+D T + + A TV+LVTH ++ + + DR++V
Sbjct: 114 ALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVV 173
Query: 791 LEGGQ 795
L G+
Sbjct: 174 LRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-21
Identities = 94/393 (23%), Positives = 168/393 (42%), Gaps = 38/393 (9%)
Query: 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRIL 995
+L V+ R++ AHL + + + P+ +F+S VG +
Sbjct: 180 VLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTV 239
Query: 996 TRLSSDLSILDF----------DIPFSIVFVAA----SGTELLAIIGIMTFVTWQVLVVA 1041
R+ I +F D+ F +VF+A S T +IG + V + +L V
Sbjct: 240 ARVRELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIG--SLVCYALLSVF 297
Query: 1042 IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101
+ ++ R ++ A ++ E+ G+ TI+A +F +
Sbjct: 298 VGPILRKRVEDKF-------------ERSAAATSFLVESVTGIETIKATATEPQFQNRWD 344
Query: 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFL--VLIPRGYVAPG-LVGLSLS 1158
+ + + F + +E +Q LT F L+ L+ G ++PG LV ++
Sbjct: 345 RQLAAYVAASFRVTNLGNIAGQAIELIQKLT-FAILLWFGAHLVIGGALSPGQLVAFNM- 402
Query: 1159 YAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIEL 1218
A +T + L++ + I++ER+ ++ P EP + P +G I
Sbjct: 403 LAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPE----LRGAITF 458
Query: 1219 RQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278
++ RY P++P VL + G +G+VG +GSGK+TL L RL P G +L+DG
Sbjct: 459 ENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518
Query: 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
VD+ LR ++ ++ QE LF S+R N+
Sbjct: 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNI 551
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 2e-21
Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 25/225 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-------LGEIPKISG----TVN---LYG 658
+ V+ + K Q +A+ G GAGK++L+ + +G+I I G TV L
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI-LIDGIDINTVTRESLRK 409
Query: 659 SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACA---LDKDINNFDHGDLTEI 713
SIA V Q + + + SIR+NI G+ D+ Y+ A A A + K N +D T +
Sbjct: 410 SIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYD----TLV 465
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVI 773
G+RG LSGG++QR+ +ARA+ +A I + D+ SA+D T A + N + A + +T
Sbjct: 466 GERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKN-AIDALRKNRTTF 524
Query: 774 LVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
++ H++ + D +L L+ G++ + G++QEL+ F +L+
Sbjct: 525 IIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRR 569
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 2e-21
Identities = 73/243 (30%), Positives = 110/243 (45%), Gaps = 33/243 (13%)
Query: 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKIS 651
S++I + A L ++LDIK + +A+ G GAGKS+LL I G E P +
Sbjct: 1 MSIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD-A 56
Query: 652 GTVNLYGS--------------IAYVSQT-SWIQSGSIRDNILYGKPMDKARYDKA-IKA 695
G + L G + +V Q + ++ DNI +G + K R +A I+A
Sbjct: 57 GRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRA 116
Query: 696 CALDKDINNFDHGDLTEIGQR-GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754
+ L + R LSGGQ+QR+ LARA+ + + L D+PF A+DA
Sbjct: 117 RVEEL----LRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 172
Query: 755 AATLFNECVMAAL---EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLA-G 809
L + L T + VTH E E+ DR++VL G+I Q G E+
Sbjct: 173 RKEL--RRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPA 230
Query: 810 TAF 812
+ F
Sbjct: 231 SRF 233
|
Length = 345 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 3e-21
Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 44/233 (18%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-- 659
F + A L+ V+L+I+ +++ + G G+GKS+LL + G + SG V + G
Sbjct: 11 FRYPGRKAA--LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDT 68
Query: 660 ------------IAYVSQ---TSWIQSGSIRDNILYG-------KPMDKARYDKAIKACA 697
+ V Q ++ D + +G + + R +A++
Sbjct: 69 SSEKSLLELRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVG 127
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD---AHT 754
L++ ++ NLSGGQKQR+ +A + +I L D+P + +D
Sbjct: 128 LEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176
Query: 755 AATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
L + + KT+I+VTH +E + E DR++VL+ G+I G+ E+
Sbjct: 177 LLELLKK--LKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIF 227
|
Length = 235 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 4e-21
Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 32/213 (15%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-SGTVNLYGS--------- 659
+ L+ VNL+I+ + +A+ G G+GKS+LL +LG + K SG V + G
Sbjct: 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLTKLSEKE 76
Query: 660 --------IAYVSQT-SWIQSGSIRDNI----LYGKPMDKARYDKAIKACALDKDINNFD 706
I +V Q + + ++ +N+ L R A + L + + D
Sbjct: 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEE---LLEVLGLED 133
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MA 765
+ + LSGGQ+QR+ +ARA+ N+ I L D+P +D+ TA + +
Sbjct: 134 RLLKKKPSE----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN 189
Query: 766 ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798
KT+I+VTH E DR++ L+ G+I +
Sbjct: 190 KERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 5e-21
Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 21/230 (9%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV------- 654
F++DP I L G++ I + +A+ G GAGKS++L + SG++
Sbjct: 270 FAYDPRRPI--LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDI 327
Query: 655 ------NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYD---KAIKACALDKDINNF 705
+L +I V Q + + + +I NI YG+P A + A +A + I +
Sbjct: 328 RDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP--DATAEEVGAAAEAAQIHDFIQSL 385
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
G T +G+RGL LSGG+KQR+ +AR + + I + D+ SA+D HT +
Sbjct: 386 PEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQ-AIQAALRE 444
Query: 766 ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+T +++ H++ + + D I+VL+ G+I + G ++ELL AG + ++
Sbjct: 445 VSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 7e-21
Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 28/213 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-----------IA 661
L+ V+L+++ + G G+GKS LL I G I SG + L G I+
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74
Query: 662 YVSQT-SWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
YV Q + ++ NI YG + +DK ++ + A I++ + ++
Sbjct: 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-------RKP 127
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVIL 774
LSGG++QR+ +ARA+ + I L D+PFSA+D T L E + + K+ TV+
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREE--LKKIRKEFGVTVLH 185
Query: 775 VTH-QVEFLSEVDRILVLEGGQITQSGNYQELL 806
VTH E + D++ ++ G++ Q G +E+
Sbjct: 186 VTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 1e-20
Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 37/217 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-----------SI 660
+ ++LDIK + + + G G GK++LL I G E P SG + L G I
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS-SGEILLDGEDITDVPPEKRPI 79
Query: 661 AYVSQTSWIQSG------SIRDNILYGKPMDKARYDKAIKACALD--KDINNFDHGDLTE 712
V QS ++ +N+ +G + K IKA + + + D
Sbjct: 80 GMV-----FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD--- 131
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-- 770
++ LSGGQ+QR+ LARA+ + + L D+P SA+DA + E + L+++
Sbjct: 132 --RKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE--LKELQRELG 187
Query: 771 -TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
T + VTH Q E L+ DRI V+ G+I Q G +E+
Sbjct: 188 ITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 3e-20
Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 40/224 (17%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659
P L ++ I + + G G+GKS+LL + G + SG V L G
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75
Query: 660 --IAYVSQTSWIQSG-SIRDNILYG-----------KPMDKARYDKAIKACALDKDINNF 705
+AYV Q+ G ++ + +L G D+ ++A++
Sbjct: 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELL--------- 126
Query: 706 DHGDLTEIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV- 763
L + R ++ LSGG++QR+ +ARA+ + I L D+P S +D +
Sbjct: 127 ---GLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183
Query: 764 MAALEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELL 806
+ + TV++V H + D +++L+ G+I G +E+L
Sbjct: 184 LNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 89.0 bits (222), Expect = 3e-20
Identities = 44/185 (23%), Positives = 86/185 (46%), Gaps = 28/185 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L ++L ++ + + G GAGK++L+ ILG + SG + + G + +
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG------KDIKKEPE 69
Query: 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732
++ I Y ++ L +++ ++ L LSGG KQR+ LA+
Sbjct: 70 EVKRRIGY--LPEEPS---------LYENLTVREN----------LKLSGGMKQRLALAQ 108
Query: 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVL 791
A+ +D ++ + D+P S +D + + E KT++L +H +E + DR+ +L
Sbjct: 109 ALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAIL 168
Query: 792 EGGQI 796
G+I
Sbjct: 169 NNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 4e-20
Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 44/240 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWI-- 669
L GV+LD+ + +A+ G G+GKS+LL ILG + G + + G I +S+
Sbjct: 24 LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83
Query: 670 --------QSG------SIRDNILYGKPM-DKARYDKA-IKACALDKDINNFDHGDLTEI 713
Q G ++ +N+ + P+ + + ++ I+ L K L +
Sbjct: 84 RKRMGVLFQQGALFSSLTVFENVAF--PLREHTKLPESLIRELVLMK---------LELV 132
Query: 714 GQRGLN-------LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM-- 764
G RG LSGG ++R+ LARA+ D ++ D+P S +D +A + +E +
Sbjct: 133 GLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG-VIDELIREL 191
Query: 765 -AALEKKTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELLLAGTAF-EQLVNAHRD 821
AL TVI+VTH + L+ DR+ VL G++ G +ELL + + Q N RD
Sbjct: 192 NDALG-LTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFFNGIRD 250
|
Length = 263 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 8e-20
Identities = 68/220 (30%), Positives = 100/220 (45%), Gaps = 38/220 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659
+ VNL I+ + + + G G+GK++ L I I SG + + G
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK 76
Query: 660 IAYVSQTSWIQSG-----SIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLT 711
I YV Q Q G ++ +NI + DK R K + D +
Sbjct: 77 IGYVIQ----QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGL------DPS 126
Query: 712 EIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK- 769
E R + LSGGQ+QR+ +ARA+ D I L D+PF A+D T L E + L+K
Sbjct: 127 EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEE--IKELQKE 184
Query: 770 --KTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
KT++ VTH + E L DRI V++ G+I Q E+L
Sbjct: 185 LGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL 224
|
Length = 309 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 1e-19
Identities = 61/211 (28%), Positives = 102/211 (48%), Gaps = 40/211 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSIAYVSQTSWIQS 671
L+G++L +K + + + G G+GKS+LL I E P SGT+ + G + + +
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD-SGTIIIDGLKLTDDKKNINE- 73
Query: 672 GSIR-------------------DNILYG----KPMDKARYDKAIKACALDKDINNFDHG 708
+R +NI K M KA ++ +A L + + D
Sbjct: 74 --LRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE--RALELLEKVGLADKA 129
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL- 767
D LSGGQ+QR+ +ARA+ + + LFD+P SA+D + + VM L
Sbjct: 130 D-----AYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLD--VMKDLA 182
Query: 768 -EKKTVILVTHQVEFLSEV-DRILVLEGGQI 796
E T+++VTH++ F EV DR++ ++ G+I
Sbjct: 183 EEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 1e-19
Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 48/227 (21%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-------LGEIPKISGT-------VNL 656
+ +NL+I + + + G G+GK++ + I GEI I G V L
Sbjct: 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI-FIDGEDIREQDPVEL 73
Query: 657 YGSIAYVSQTSWIQSG-----SIRDNIL-------YGKPMDKARYDKAIKACALDKDINN 704
I YV Q Q G ++ +NI + K + R D+ + LD
Sbjct: 74 RRKIGYVIQ----QIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---- 125
Query: 705 FDHGDLTEIGQR-GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
E R LSGGQ+QR+ +ARA+ D + L D+PF A+D T L E
Sbjct: 126 ------AEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEE-- 177
Query: 764 MAALEK---KTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
L++ KT++ VTH + E DRI +++ G+I Q G E+L
Sbjct: 178 FKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 1e-19
Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 24/206 (11%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SI 660
L +NLDI + + + G G GK++ L I G SG + + G I
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDI 74
Query: 661 AYVSQT-SWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
A V Q + ++ DNI +G + + K D+ ++ A ++ +H + ++
Sbjct: 75 AMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA---ELLQIEH----LLDRK 127
Query: 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILV 775
LSGGQ+QR+ L RA+ + ++L D+P S +DA + E + T I V
Sbjct: 128 PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV 187
Query: 776 TH-QVEFLSEVDRILVLEGGQITQSG 800
TH QVE ++ DRI V+ GQI Q G
Sbjct: 188 THDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 2e-19
Identities = 63/220 (28%), Positives = 98/220 (44%), Gaps = 33/220 (15%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------- 659
L GV+L + + +A+ G GAGK++LL I+G +P SG++ G
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE 71
Query: 660 -----IAYVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
I YV + I ++ +N+L G AR KA L++ F L E
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLG---AYARRRAKRKA-RLERVYELFP--RLKER 125
Query: 714 -GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--- 769
Q LSGG++Q + +ARA+ + + L D+P + A E + A+ +
Sbjct: 126 RKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL-----APKIVEEIFEAIRELRD 180
Query: 770 --KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T++LV F E+ DR VLE G++ G ELL
Sbjct: 181 EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 3e-19
Identities = 68/230 (29%), Positives = 104/230 (45%), Gaps = 51/230 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
L+ VNL+I + +A+ G GAGKS+LL ++ G + SG + G
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 660 ---IAYVSQT-SWIQSGSIRDNILYGKPMDKAR-------YDKAIKACALDKDINNFDHG 708
I + Q + + S+ +N+L G+ + + K KA ALD
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA-------- 131
Query: 709 DLTEIG------QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
L +G QR LSGGQ+QR+ +ARA+ I L D+P +++D +A +
Sbjct: 132 -LERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESA-----KK 185
Query: 763 VMAALEK------KTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQEL 805
VM L+ TVI+ HQV+ DRI+ L+ G+I G EL
Sbjct: 186 VMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 4e-19
Identities = 69/217 (31%), Positives = 104/217 (47%), Gaps = 38/217 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-----------IA 661
L VNL++ +A+ G G+GKS+LL I G SG + L G I
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 662 YVSQT-SWIQSGSIRDNILYG-------KPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
+V Q + + ++RDNI +G K KAR ++ ++ L+ +
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG------------L 123
Query: 714 GQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-- 770
G R N LSGGQ+QR+ LARA+ + + L D+PF A+DA L + L +
Sbjct: 124 GDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL--RSWLRKLHDEVH 181
Query: 771 -TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
T + VTH Q E + DRI+V+ G+I Q G+ E+
Sbjct: 182 VTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 8e-19
Identities = 35/96 (36%), Positives = 55/96 (57%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I ++ RY+P+ P++L I+ G VG+VGR+GSGK+TL + R P G +L
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
+DG D+ LR ++ ++ QE LF S+R N+
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNI 96
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 1e-18
Identities = 93/435 (21%), Positives = 173/435 (39%), Gaps = 50/435 (11%)
Query: 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILT 996
L+ + V + + ++ L +K + + F I + P+ FF G I +
Sbjct: 196 LLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIAS 255
Query: 997 RLSSDLSILDF---DIP---FSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRF 1050
R+ + + +F + V + +L ++T + + A ++A++
Sbjct: 256 RVQLNDQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI---GIAFAAINVLALQL 312
Query: 1051 VQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN----YLKLVDI 1106
V R + R L + + Q + T++A + FF KL++
Sbjct: 313 VSRRRVDANRRLQQ----DAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNA 368
Query: 1107 DASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV----LIPRGYVAPG--LVGLSLSYA 1160
L GV+ ++ + L LT +AL LV + G + G + SL +
Sbjct: 369 QQEL-----GVLTQILGVLPTL--LTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSS 421
Query: 1161 FT--LTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE---DKRPPSSWPFKGR 1215
F + F + + R+ + P +P E S G
Sbjct: 422 FLEPVNNLVGFGGTLQELEGD----LNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGY 477
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT---LISALFRLVEPAGG 1272
+ELR + Y P P +++ + T G RV +VG +GSGK+T L++ L++ P G
Sbjct: 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSG 534
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL---DPLGLYSDDEIWKALEKC 1329
IL DG+ + + L ++++ Q+ LF G+VR NL DP D ++ +A +
Sbjct: 535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP--TIPDADLVRACKDA 592
Query: 1330 QLKTTISSLPNKLDS 1344
+ I+S P D+
Sbjct: 593 AIHDVITSRPGGYDA 607
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 1e-18
Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 51/226 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-SIAYVSQTSWI- 669
L+G++L ++ + + + G G+GKS+LL + G E P SG++ + G + +
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD-SGSITVDGEDVGDKKDILKLR 76
Query: 670 -QSG------------SIRDNILY------GKPMDKARYDKAIKACALDKDINNFDHGDL 710
+ G ++ +N+ +AR +KA++ L+K
Sbjct: 77 RKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAR-EKALEL--LEK---------- 123
Query: 711 TEIGQRGL---------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
GL LSGGQ+QR+ +ARA+ D + LFD+P SA+D + +
Sbjct: 124 -----VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDV 178
Query: 762 CVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
A E T+I+VTH++ F EV DR++ ++ G+I + G +E
Sbjct: 179 MKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFF 224
|
Length = 240 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 1e-18
Identities = 68/221 (30%), Positives = 105/221 (47%), Gaps = 33/221 (14%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658
I LRGV+L+++ + +A+ G GAGK++LL I+G + SG + G
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74
Query: 659 ----SIAYVSQTSWI-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE- 712
IAYV + I ++ +N+L G AR DK + L++ F L E
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGA---YARRDKEAQERDLEEVYELFP--RLKER 129
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--- 769
QR LSGG++Q + +ARA+ + + L D+P + A E + A+++
Sbjct: 130 RNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL-----APKIVEEIFEAIKELRK 184
Query: 770 ---KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T++LV F E+ DR VLE G+I SG ELL
Sbjct: 185 EGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225
|
Length = 237 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 2e-18
Identities = 56/222 (25%), Positives = 108/222 (48%), Gaps = 33/222 (14%)
Query: 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
++++ + + P+L P L+ V+ +K +KI + G GAGKS+L+ A+ +
Sbjct: 4 HGEIEVENLSVRYAPDLP-PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 652 GTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACAL 698
G + + G S+ + Q + SG+IR N+ P D Y
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL---DPFD--EYS-------- 109
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
D++I +G L + + GLNLS GQ+Q + LARA+ + + D+ +++D T A L
Sbjct: 110 DEEI----YGAL-RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA-L 163
Query: 759 FNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
+ + T++ + H++ + + D+ILV++ G++ +
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 3e-18
Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 36/216 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSIAYVSQTS---- 667
L+ ++L +K + + + G G GK++LL I G E +GT+ G +++
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT-AGTIYQGGRD--ITRLPPQKR 76
Query: 668 ----WIQSG------SIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714
QS ++ DNI L + M +A + + A LD L
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERV-AELLDLV-------GLPGSE 128
Query: 715 QRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK--- 770
++ LSGGQ+QR+ LARA+ + L D+P SA+DA L E + L+++
Sbjct: 129 RKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE--IRQLQRRLGV 186
Query: 771 TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
T I+VTH Q E LS DRI+V+ G I Q G QE+
Sbjct: 187 TTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 3e-18
Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 46/224 (20%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658
+ L V+ IK + + + G G+GKS+L AILG + SG++ G
Sbjct: 18 VKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLR 77
Query: 659 -----SIAYVSQ---TSWIQSGSIRDNI-----LYGKPMDKARYDKAIKACA----LDKD 701
I V Q +S +I + I ++GK K +A+ L ++
Sbjct: 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEE 137
Query: 702 I-NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA---T 757
+ N + H LSGGQ+QR+ +ARA+ + + + D+P SA+D A
Sbjct: 138 VLNRYPHE-----------LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILD 186
Query: 758 LFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSG 800
L + + T++ +TH + ++++ DR+ V+ G+I + G
Sbjct: 187 LLKK--LQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 4e-18
Identities = 102/462 (22%), Positives = 189/462 (40%), Gaps = 59/462 (12%)
Query: 915 LQAAATYWLAYAIQ--IPK-------ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLK 965
+ A +Y+L I IP I S LI Y + Y + F LG +
Sbjct: 171 ISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYI----IQQILSYIQIFLLNVLGQR 226
Query: 966 ASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGT---- 1021
S + +F+ PM FF + G I++R + SI+D A + T
Sbjct: 227 LSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIID----------ALASTILSL 276
Query: 1022 --ELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTT--KAPVMNYT 1077
++ ++ + F+ Q +++ + +++++ I R ++N V+N +
Sbjct: 277 FLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSS 336
Query: 1078 A-ETSQGVVTIRA-------FNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQ 1129
E G+ TI++ ++ +D F +YL S + ++A+
Sbjct: 337 IIEDLNGIETIKSLTSEAERYSKIDSEFGDYLN-----KSF---KYQKADQGQQAIKAVT 388
Query: 1130 NLTLFTAALFL--VLIPRGYVAPG-LVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVER 1186
L L L+ L+ RG + G L+ + ++ LT + ++ L ++ R
Sbjct: 389 KLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIIN-LQPKLQAARVANNR 447
Query: 1187 IKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRV 1246
+ + + E + K+ G I + + Y + +L I+ T ++
Sbjct: 448 LNEVYLVDSE---FINKKKRTELNNLNGDIVINDVSYSYGYGSN-ILSDISLTIKMNSKT 503
Query: 1247 GVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGS 1306
+VG +GSGK+TL L + G IL++G + + LR ++ +PQEP +F GS
Sbjct: 504 TIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGS 563
Query: 1307 VRTNLDPLGL---YSDDEIWKALEKCQLKTTISSLPNKLDSS 1345
+ NL LG S DEIW A E ++K I ++P +
Sbjct: 564 ILENL-LLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTE 604
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 4e-18
Identities = 62/243 (25%), Positives = 110/243 (45%), Gaps = 63/243 (25%)
Query: 605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG----- 658
D + L+ V+L + + + G GAGKS+L+ I G E P SG+V + G
Sbjct: 13 DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-SGSVLVDGTDLTL 71
Query: 659 -----------SIAYVSQT-SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFD 706
I + Q + + S ++ +N+ P++ A KA
Sbjct: 72 LSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL--PLEIAGVPKA-------------- 115
Query: 707 HGDLTEIGQR--------GL---------NLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
EI +R GL LSGGQKQR+ +ARA+ N+ + L D+ SA
Sbjct: 116 -----EIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 750 VDAHTAATLFNECVMAALEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
+D T ++ ++ + ++ T++L+TH++E + + DR+ V+E G++ + G +E+
Sbjct: 171 LDPETTQSILA--LLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
Query: 806 LLA 808
Sbjct: 229 FAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 6e-18
Identities = 65/218 (29%), Positives = 111/218 (50%), Gaps = 32/218 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWI-- 669
+ V+LD++ + + G G+GKS+LL I I SG V + G IA +S+
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 670 ---------QS------GSIRDNILYG---KPMDKA-RYDKAIKACALDKDINNFDHGDL 710
QS ++ +N+ +G + + +A R ++A +A L + ++H
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALEL-VGLEGWEHKYP 158
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEK 769
E LSGG +QR+ LARA+ D DI L D+ FSA+D + +E + + A +
Sbjct: 159 DE-------LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ 211
Query: 770 KTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
KT++ +TH + E L DRI +++ G++ Q G +E+L
Sbjct: 212 KTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 9e-18
Identities = 63/226 (27%), Positives = 102/226 (45%), Gaps = 37/226 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQTSWIQ 670
L V+L + ++I + G GAGKS+LL + GE+ SG V + Y+SQ +
Sbjct: 19 LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLD 78
Query: 671 SG-SIRDNILYG-KPMDK--ARYDKAIKACALDKDI------NNFDHGDLTEIGQR---- 716
++ D ++ G + + A ++A A D + D + R
Sbjct: 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEA 138
Query: 717 --GL----------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
GL +LSGG ++R+ LARA+ + D+ L D+P + +D + L +
Sbjct: 139 LLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDY--- 195
Query: 765 AALE--KKTVILVTHQVEFLSEV-DRILVLEGGQITQ-SGNYQELL 806
L+ TVI+V+H FL V IL L+ G++T GNY L
Sbjct: 196 --LKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYL 239
|
Length = 530 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+ + RY P VL+ ++ + G + ++G +GSGK+TL + L+ P G +
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTN 1310
+DG DI +L + +PQ+ LF GS+ N
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAEN 95
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 2e-17
Identities = 63/219 (28%), Positives = 108/219 (49%), Gaps = 36/219 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWI-- 669
L+GV+LD++ + +A+ G G+GKS+LL I+G + SG V + G I+ +S+
Sbjct: 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75
Query: 670 --------QSG------SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
QSG ++ +N+ + ++ I+ L+K L +G
Sbjct: 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK---------LEAVGL 126
Query: 716 RGL------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM--AAL 767
RG LSGG K+R+ LARA+ D ++ L+D+P + +D A+ + ++ +
Sbjct: 127 RGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDP-IASGVIDDLIRSLKKE 185
Query: 768 EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
T I+VTH ++ + DRI VL G+I G +EL
Sbjct: 186 LGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 87.7 bits (217), Expect = 3e-17
Identities = 68/249 (27%), Positives = 126/249 (50%), Gaps = 16/249 (6%)
Query: 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI 643
R +S S S+K ++ + + P L P L G++ + ++K+ V G GAGKSS+L A+
Sbjct: 1224 RPVSGWPSRGSIKFEDVHLRYRPGLP-PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNAL 1282
Query: 644 L-------GEIP------KISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYD 690
G I G +L ++ + Q+ + SG++R NI + A
Sbjct: 1283 FRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLW 1342
Query: 691 KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV 750
+A++ + I+ G E+ + G N S GQ+Q + LARA+ + I + D+ ++V
Sbjct: 1343 EALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASV 1402
Query: 751 DAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL-AG 809
D T + L + + T++++ H++ + + D+ILVL GQ+ + + QELL
Sbjct: 1403 DVRTDS-LIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDT 1461
Query: 810 TAFEQLVNA 818
+AF ++V++
Sbjct: 1462 SAFFRMVHS 1470
|
Length = 1495 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 3e-17
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 8/162 (4%)
Query: 1186 RIKQFMHIPPEPPAIVE--DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEG 1243
++++F + P + + KG +E + Y N+ ++ ++ G
Sbjct: 305 KLEEFFEVEDAVPDVRDPPGAIDLGR--VKGAVEFDDVSFSY-DNSRQGVEDVSFEAKPG 361
Query: 1244 TRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
V +VG TG+GK+TLI+ L R+ +P G ILIDG DI ++ LR ++++ Q+ LF
Sbjct: 362 QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLF 421
Query: 1304 RGSVRTNLDPLGL--YSDDEIWKALEKCQLKTTISSLPNKLD 1343
S+ N+ +G +D+E+ A E+ Q I P+ D
Sbjct: 422 NRSIEDNIR-VGRPDATDEEMRAAAERAQAHDFIERKPDGYD 462
|
Length = 588 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 3e-17
Identities = 66/213 (30%), Positives = 103/213 (48%), Gaps = 22/213 (10%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG----------- 658
L V+LDI + +A+ G G+GK++LL I G E P SGT+ G
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD-SGTILFGGEDATDVPVQER 74
Query: 659 SIAYVSQT-SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
++ +V Q + + ++ DN+ +G + K R ++ +A K L + R
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRV-KPRSERPPEAEIRAKVHELLKLVQLDWLADRY 133
Query: 718 LN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVI 773
LSGGQ+QR+ LARA+ + + L D+PF A+DA L + L + T +
Sbjct: 134 PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR--WLRRLHDELHVTTV 191
Query: 774 LVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
VTH Q E L DR++V+ G+I Q G E+
Sbjct: 192 FVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 4e-17
Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 49/220 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
L+ V+L I + +A+ G GAGKS+LL + G + SG+V + G+
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 660 ---IAYVSQT-SWIQSGSIRDNILYGK------------PMDKARYDKAIKACALDKDIN 703
I + Q + I+ S+ +N+L G+ K +A+ A L++
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAA--LER--- 131
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
G L + QR LSGGQ+QR+ +ARA+ + L D+P +++D ++ V
Sbjct: 132 ---VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASS-----RQV 183
Query: 764 MAALEK------KTVILVTHQVEF-LSEVDRILVLEGGQI 796
M L++ TVI+ HQV+ DRI+ L+ G+I
Sbjct: 184 MDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 5e-17
Identities = 70/268 (26%), Positives = 131/268 (48%), Gaps = 25/268 (9%)
Query: 557 SIMIQVKVSFDRINAF-LLD--HELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTL 613
S++ Q V+ +R+ F L+D + +D R + S R + I +F++ + L
Sbjct: 306 SMLQQAVVAGERV--FELMDGPRQQYGNDDRPLQ---SGR-IDIDNVSFAYRDDN--LVL 357
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660
+ +NL + +A+ G G+GKS+L ++G P G + L G +
Sbjct: 358 QNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417
Query: 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720
A V Q + + + N+ G+ + + + +A++ L + + G T +G++G NL
Sbjct: 418 AMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE 780
S GQKQ + LAR + I + D+ + +D+ T + + + A E T++++ H++
Sbjct: 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI-QQALAAVREHTTLVVIAHRLS 536
Query: 781 FLSEVDRILVLEGGQITQSGNYQELLLA 808
+ E D ILVL GQ + G +Q+LL A
Sbjct: 537 TIVEADTILVLHRGQAVEQGTHQQLLAA 564
|
Length = 592 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 5e-17
Identities = 57/236 (24%), Positives = 111/236 (47%), Gaps = 51/236 (21%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYGS----- 659
+P +R V+ +++ + + + G G+GKS+L A++G +P+ SG V L G
Sbjct: 21 RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80
Query: 660 ------------IAYVSQ---TSWIQSGSIRDNI-----LYGKPMDKARYDKAIKACAL- 698
IA + Q TS +I D I L+GK +A++
Sbjct: 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQV 140
Query: 699 ----DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754
+ + + H LSGG +QR+ +A A+ + + D+P +A+D T
Sbjct: 141 GLPDPERRDRYPH-----------QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT 189
Query: 755 AATLFNECVMAALEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
A + + ++ L+++ V+ +TH + ++E+ DR++V+ G+I ++G +E+L
Sbjct: 190 QAQILD--LLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243
|
Length = 539 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 6e-17
Identities = 57/206 (27%), Positives = 88/206 (42%), Gaps = 37/206 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L+ V+ ++ ++I + G GAGKS+LL + G P SGTV + G ++ + + G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG---LGGG 94
Query: 673 -----SIRDNI-----LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG----L 718
+ R+NI L G + + D+ I + +E+G
Sbjct: 95 FNPELTGRENIYLNGRLLG--LSRKEIDEKIDEII-----------EFSELGDFIDLPVK 141
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT---AATLFNECVMAALEKKTVILV 775
S G K R+ A A + DI L D+ + DA E + KTVILV
Sbjct: 142 TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQG---KTVILV 198
Query: 776 THQVEFLSEV-DRILVLEGGQITQSG 800
+H + + DR LVLE G+I G
Sbjct: 199 SHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 7e-17
Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 45/226 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTV-----NLYG---- 658
L+ +NLDI Q A+ G G GKS+LL ++ L +I G V ++Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM----DKARYD----KAIKACAL---DKD 701
+ V Q SI DNI YG + DK D +++K AL KD
Sbjct: 77 VVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD 136
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ L LSGGQ+QR+ +ARA+ + ++ L D+P SA+D + E
Sbjct: 137 ----------RLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKI--E 184
Query: 762 CVMAALEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
++ L+KK T+++VTH ++ + + DR G++ + G +++
Sbjct: 185 ELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 9e-17
Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 40/223 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
+ +LD++ + + G G+GKS+L+ + I G + + G
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 659 ---SIAYVSQTSWIQSG-----SIRDNILYG---KPMDKA-RYDKAIKACALDKDINNFD 706
I+ V Q ++ +N+ +G + + KA R ++A++A L + +
Sbjct: 104 RRKKISMVFQ----SFALLPHRTVLENVAFGLEVQGVPKAEREERALEALEL-VGLEGYA 158
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MA 765
E LSGG +QR+ LARA+ ND DI L D+ FSA+D + +E + +
Sbjct: 159 DKYPNE-------LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQ 211
Query: 766 ALEKKTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELLL 807
A KKT++ +TH + E L DRI +++ G+I Q G +E+LL
Sbjct: 212 AKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILL 254
|
Length = 386 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 1e-16
Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 1213 KGRIELRQLKIRYRPNAP--LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA 1270
KG ++ + + Y P P LVL+ ++ T G +VG +GSGK+T+++ L +P
Sbjct: 9 KGIVKFQNVTFAY-PTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67
Query: 1271 GGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD-PLGLYSDDEIWKALEKC 1329
GG +L+DG I K L K+S++ QEP LF S++ N+ L S + + +A +K
Sbjct: 68 GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKA 127
Query: 1330 QLKTTISSLPNKLDS 1344
+ IS L + D+
Sbjct: 128 HAHSFISELASGYDT 142
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 1e-16
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 36/221 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAY----- 662
L V++DI Q A+ G G GKS+ L I L + ++ G + G Y
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 663 ----------VSQTSWIQSGSIRDNILYG-----KPMD-KARYDKAIKACALDKDINNFD 706
V Q SI DN+ YG D R +++++ AL ++ +
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-- 172
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
++ GL+LSGGQ+QR+ +ARA+ D ++ L D+P SA+D A + + +
Sbjct: 173 -----QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDP-VATSKIEDLIEEL 226
Query: 767 LEKKTVILVTHQVEFLSEV-DRILV-LEGGQITQSGNYQEL 805
E+ TV++VTH ++ + + D+ V L GG++ + + ++
Sbjct: 227 AEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267
|
Length = 285 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-16
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 27/129 (20%)
Query: 637 SSLLYAILGEIPKISGTVNLYG--------------SIAYVSQTSWI-QSGSIRDNILYG 681
S+LL I G + SGT+ L G I V Q + ++R+N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 682 KPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739
AR ++A++ L ++ + LSGGQKQR+ +ARA+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 740 IYLFDDPFS 748
+ L D+P +
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 2e-16
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
+E+ L Y +L ++ + +G G++G GSGK+TL+ L L++P G +
Sbjct: 2 MLEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEP-TLFRGSVR--------TNLDPLGLYSDDEIWKA 1325
L+DG DI S+ K+L KL+ +PQ P F +V +L G S ++
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 1326 LE 1327
E
Sbjct: 120 EE 121
|
Length = 258 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 2e-16
Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 33/209 (15%)
Query: 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI----- 660
L V+L I + + V G G GK++LL I G + G++ L G
Sbjct: 14 EGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG 73
Query: 661 ---AYVSQTS----WIQSGSIRDNILYG---KPMDKA-RYDKAIKACALDKDINNFDHGD 709
V Q W+ ++ DN+ +G + ++KA R + A + AL + +H
Sbjct: 74 AERGVVFQNEALLPWL---NVIDNVAFGLQLRGIEKAQRREIAHQMLALVG-LEGAEH-- 127
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+ LSGG +QR+ +ARA+ + + L D+PF A+DA T + + E
Sbjct: 128 -----KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET 182
Query: 770 -KTVILVTHQVE---FLSEVDRILVLEGG 794
K V+L+TH +E FL+ R++VL G
Sbjct: 183 GKQVLLITHDIEEALFLA--TRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 3e-16
Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 16/240 (6%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
+KI + ++ L P L+ V IK QK+ +CG G+GKSSL A + G +
Sbjct: 20 IKIHDLCVRYENNLK-PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI 78
Query: 655 -------------NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
L ++ + Q + SGSIR N+ R +A++ L
Sbjct: 79 VIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNM 138
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ + G + + G N S GQ+Q LARA + I + D+ +++D T L +
Sbjct: 139 VKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENIL-QK 197
Query: 762 CVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL-AGTAFEQLVNAHR 820
VM A +TV+ + H+V + + D +LVL G + + + LL F LV +
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRTDK 257
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 4e-16
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PA 1270
IELR L + Y LK I+ +G ++G +G GK+TL+ L RL + P
Sbjct: 1 IELRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1271 GGSILIDGVDICSMGLKD--LRVKLSIIPQEPTLFRGSVRTNLDPLGL 1316
G +L+DG DI + + LR ++ ++ Q+P F GS+ N+ GL
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVA-YGL 105
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 5e-16
Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 8/162 (4%)
Query: 1185 ERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGT 1244
E + F+ P P +K S+ P IE L+I P+ + + T G
Sbjct: 322 ESLVTFLETPLAHPQ-QGEKELASNDPVT--IEAEDLEI-LSPDGKTLAGPLNFTLPAGQ 377
Query: 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304
R+ +VG +G+GKT+L++AL + P GS+ I+G+++ + + R LS + Q P L
Sbjct: 378 RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH 436
Query: 1305 GSVRTNLDPLG--LYSDDEIWKALEKCQLKTTISSLPNKLDS 1344
G++R N+ LG SD+++ +ALE + + LP LD+
Sbjct: 437 GTLRDNV-LLGNPDASDEQLQQALENAWVSEFLPLLPQGLDT 477
|
Length = 588 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 5e-16
Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 51/230 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L+ +NL+I + +A+ G GAGKS+LL I + SG++ L G
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 659 --SIAYVSQT-SWIQSGSIRDNILYGK-------PMDKARYDKAIKACALDKDINNFDHG 708
I + Q + I+ ++ +N+L+G+ R+ + K AL
Sbjct: 78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA-------- 129
Query: 709 DLTEIG------QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
L +G QR LSGGQ+QR+ +ARA+ D+ L D+P +++D T+ +
Sbjct: 130 -LERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTS-----KQ 183
Query: 763 VMAALEK------KTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805
VM L++ TVI+ HQV+ + DRI+ L+ G+I G EL
Sbjct: 184 VMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 5e-16
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 32/215 (14%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------------- 658
+L I + + G G+GKS+ + + I +G + + G
Sbjct: 12 ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRK 71
Query: 659 SIAYVSQT-SWIQSGSIRDNILYGKPMDK----ARYDKAIKACALDKDINNFDHGDLTEI 713
I V Q + +I N G + R +KA++ L + ++H E
Sbjct: 72 KIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKL-VGLEEYEHRYPDE- 129
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTV 772
LSGG +QR+ LARA+ + DI L D+ FSA+D ++ +E + A +KT+
Sbjct: 130 ------LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTI 183
Query: 773 ILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
+ +TH + E + DRI++++ G+I Q G E+L
Sbjct: 184 VFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 6e-16
Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 42/225 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYGSIAYVSQTSW-IQ 670
L G++L++K + +A+ G G+GK++LL I L E P+ +GT+ + G I + S Q
Sbjct: 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE-AGTIRV-GDITIDTARSLSQQ 76
Query: 671 SGSIR----------------------DNILYGKPMDKARYDKAIKACALDKDINNFDHG 708
G IR +NI+ G P+ K +A A +++
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-PVIVKGEPKE-EATARAREL------ 128
Query: 709 DLTEIGQRG------LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
L ++G G LSGGQ+QR+ +ARA+ ++ LFD+P SA+D + N
Sbjct: 129 -LAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTI 187
Query: 763 VMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
A EK+T+++VTH++ F +V DR + ++ G+I + G + L
Sbjct: 188 RQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232
|
Length = 250 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 6e-16
Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 48/227 (21%)
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILG---------EIPKISGTVNLYG------- 658
+LDI+ + + G G+GKS+LL A+ G + G+V++
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 659 -----SIAYVSQT----SWIQSGSIRDNILYGKPMD-------KARYDKAIKACALDKDI 702
++ V Q W ++ +N+ +G M + R D+ ++ L +
Sbjct: 102 RLRTHRVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWA 158
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ LSGG +QR+ LARA +A I L D+PFSA+D L +E
Sbjct: 159 DRKPG-----------ELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDEL 207
Query: 763 V-MAALEKKTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELLL 807
+ + + KKT++ V+H + E L +RI ++EGG+I Q G +E++L
Sbjct: 208 LELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 7e-16
Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 38/216 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-SIAYVSQ----- 665
+ ++L I + + + G G GK+++L I G E P SG + L G I +V
Sbjct: 30 ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-SGRIMLDGQDITHVPAENRHV 88
Query: 666 TSWIQS------GSIRDNILYGKPMDK-------ARYDKAIKACALDKDINNFDHGDLTE 712
+ QS ++ +N+ +G M K R +A++ L+ +
Sbjct: 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE------EFAQ--- 139
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-- 770
++ LSGGQ+QR+ +ARAV N + L D+ SA+D + NE + AL++K
Sbjct: 140 --RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNE--LKALQRKLG 195
Query: 771 -TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQE 804
T + VTH Q E L+ DRI+V+ G+I Q G +E
Sbjct: 196 ITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231
|
Length = 375 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 7e-16
Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 39/219 (17%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG--------- 658
+ L V+L+I + + G GAGKS+LL I E P SG+V + G
Sbjct: 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT-SGSVFVDGQDLTALSEA 76
Query: 659 -------SIAYVSQT-SWIQSGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNF 705
I + Q + + S ++ +N+ + G P + + L +
Sbjct: 77 ELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVP-KAEIKQRVAELLEL---VGLS 132
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
D D LSGGQKQR+ +ARA+ N+ I L D+ SA+D T ++ ++
Sbjct: 133 DKADRYP-----AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE--LLK 185
Query: 766 ALEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSG 800
+ ++ T++L+TH++E + + DR+ VL+ G++ + G
Sbjct: 186 DINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEG 224
|
Length = 339 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 76.3 bits (189), Expect = 7e-16
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 51/195 (26%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668
+ L GV+L ++ + A+ G GAGKS+L+ + G SG +
Sbjct: 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI-------------L 58
Query: 669 IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG---QRGLNLSGGQK 725
+ GK + A A G I Q LS G++
Sbjct: 59 VD----------GKEVSFASPRDAR------------RAG----IAMVYQ----LSVGER 88
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS 783
Q +++ARA+ +A + + D+P +A+ LF V+ L + VI ++H+++ +
Sbjct: 89 QMVEIARALARNARLLILDEPTAALTPAEVERLFK--VIRRLRAQGVAVIFISHRLDEVF 146
Query: 784 EV-DRILVLEGGQIT 797
E+ DR+ VL G++
Sbjct: 147 EIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 1e-15
Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 6/205 (2%)
Query: 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIV 1201
+ G + G + + F L+ FL Y + + +++ + +
Sbjct: 191 GVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALT---DMEKMFDLLDVEAEVS 247
Query: 1202 EDKRPPSSWPF-KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLI 1260
+ P WP G + + Y P P +L GI+ T G V +VG +G+GK+T++
Sbjct: 248 DAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTIL 306
Query: 1261 SALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSD 1319
LFR + GSI IDG DI + + LR + I+PQ+ LF ++ N+ +
Sbjct: 307 RLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATA 366
Query: 1320 DEIWKALEKCQLKTTISSLPNKLDS 1344
+E+ A E Q+ I SLP D+
Sbjct: 367 EEVGAAAEAAQIHDFIQSLPEGYDT 391
|
Length = 497 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 1e-15
Identities = 53/211 (25%), Positives = 94/211 (44%), Gaps = 22/211 (10%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659
L ++L ++ + IA+ G G GKS+LL + I SGT+ G
Sbjct: 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYR 76
Query: 660 --IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
++Y +QT + ++ DN+++ P + R + +A ALD + F D + + +
Sbjct: 77 QQVSYCAQTPALFGDTVEDNLIF--PW-QIRNRRPDRAAALD-LLARFALPD-SILTKNI 131
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL-VT 776
LSGG+KQRI L R + I L D+ SA+D + E+ +L +T
Sbjct: 132 TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWIT 191
Query: 777 H-QVEFLSEVDRILVLEGGQIT--QSGNYQE 804
H + + + D+++ L+ G Q +
Sbjct: 192 HDKDQAIRHADKVITLQPGHAGEMQEARQEL 222
|
Length = 223 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 17/203 (8%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ--TS 667
L+ ++ +I +++ + G GAGKS+LL I G SG V + G +A + +
Sbjct: 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAG 99
Query: 668 WIQSGSIRDNI-LYGKPMDKARYDKAIKACALDKDINNFDH-GDLTEIGQRGLNLSGGQK 725
+ + R+NI L G + R K I +I F GD I Q S G
Sbjct: 100 FDPELTGRENIYLRGLILGLTR--KEIDEKV--DEIIEFAELGDF--IDQPVKTYSSGMY 153
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDA---HTAATLFNECVMAALEKKTVILVTHQVEFL 782
R+ + A + + DI L D+ + DA NE V + KT++LV+H + +
Sbjct: 154 ARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELV---EKNKTIVLVSHDLGAI 210
Query: 783 SEV-DRILVLEGGQITQSGNYQE 804
+ DR + LE GQI G+ +E
Sbjct: 211 KQYCDRAIWLEHGQIRMEGSPEE 233
|
Length = 249 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 65/215 (30%), Positives = 93/215 (43%), Gaps = 37/215 (17%)
Query: 613 LRGVNLDIKW---AQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---------- 659
L L I + + + G+ GAGKS+LL I G GT+ L G+
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 660 -------IAYVSQT-SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
I V Q + ++R+N+ +G + R D+ I L D L
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDR-ISVDEL------LDLLGLD 122
Query: 712 EIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEK 769
+ R LSGG+KQR+ LARA+ ++ L D+PFSA+D L E +
Sbjct: 123 HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN 182
Query: 770 KTVILVTHQVEFLSEV----DRILVLEGGQITQSG 800
VI VTH LSE DRI+V+E G++ G
Sbjct: 183 IPVIFVTHD---LSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-15
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
E+ L RY L ++ T G V +VG GSGK+TL+ A+ L++P G ILI
Sbjct: 1 EIENLSFRY--GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 1277 DGVDICSMGLKDLRVKLSIIPQ 1298
DG DI + L++LR ++ +PQ
Sbjct: 59 DGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 75.5 bits (187), Expect = 2e-15
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
E+ L + Y VL ++ + G VG++G G+GK+TL+ L L++P+ G IL+
Sbjct: 1 EVENLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
Query: 1277 DGVDICSMGLKDLRVKLSIIPQ 1298
DG D+ S+ K+L K++ +PQ
Sbjct: 59 DGKDLASLSPKELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-15
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 33/224 (14%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
++ + + +D + L+ ++ I +IA+ G GAGKS+LL + GE+ +SGTV
Sbjct: 322 LEFENVSKGYDGGRLL--LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 655 NLYG---SIAYVSQTS--WIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGD 709
+ G I Y Q ++ + + G P + +A F G+
Sbjct: 380 KV-GETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG------F-TGE 431
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+ + LSGG+K R+ LA+ + ++ L D+P + +D + + ALE+
Sbjct: 432 --DQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES---------LEALEE 480
Query: 770 K------TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
TV+LV+H FL V RI ++E G Y++ L
Sbjct: 481 ALLDFEGTVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYL 524
|
Length = 530 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 3e-15
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+ L Y PN LK ++ + + G V ++G +G+GK+TL+ L LVEP GS+L
Sbjct: 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 1276 IDGVDICSMGLKDLR 1290
IDG DI + K LR
Sbjct: 60 IDGTDINKLKGKALR 74
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 3e-15
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 24/201 (11%)
Query: 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT-----VNLYGSIAYVSQTSWI-Q 670
+L++ + +A+ G GAGKS+LL I G I SG+ + G Y S + Q
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 671 SG------SIRDNILYG-KPMDK--ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721
++R NI G P K A + + A I ++ + + LS
Sbjct: 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADY-------LDRLPEQLS 130
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVE 780
GGQ+QR+ LAR + I L D+PFSA+D + E++ T+++VTH +
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
Query: 781 FLSEV-DRILVLEGGQITQSG 800
+ +I V+ G+I
Sbjct: 191 DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 3e-15
Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 26/194 (13%)
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVSQT-SWIQSGSIRDN 677
G G GK++LL + G SG++ L G I V Q+ + ++ +N
Sbjct: 3 GPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEEN 62
Query: 678 ILYGKPMDKARYDKA-IKACALDKDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVY 735
+ +G M K +A IK L+ L E R LSGGQ+QR+ LARA+
Sbjct: 63 VAFGLKMRKV--PRAEIKPRVLEA----LRLVQLEEFADRKPHQLSGGQQQRVALARALV 116
Query: 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTH-QVEFLSEVDRILVL 791
I L D+P SA+D + E ++++ T + VTH Q E ++ DRI ++
Sbjct: 117 FKPKILLLDEPLSALDKKLRDQMQLELKT--IQEQLGITFVFVTHDQEEAMTMSDRIAIM 174
Query: 792 EGGQITQSGNYQEL 805
G+I Q G +E+
Sbjct: 175 RKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 3e-15
Identities = 62/239 (25%), Positives = 108/239 (45%), Gaps = 46/239 (19%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------- 659
+ L GV+L ++ + A+ G GAGKS+L+ + G P SG + + G
Sbjct: 20 GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRD 79
Query: 660 -----IAYVSQ-TSWIQSGSIRDNILYG-------KPMDKAR-YDKAIKACALDKDINNF 705
IA V Q S + + S+ +NI G +D+ +A + A +
Sbjct: 80 ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDP 139
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
D T +G +LS Q+Q +++ARA+ DA + + D+P +A+ LF+ ++
Sbjct: 140 D----TLVG----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD--LIR 189
Query: 766 ALEKK--TVILVTHQVEFLSEV----DRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
L+ + +I ++H L EV DRI VL G++ + A T+ ++LV
Sbjct: 190 RLKAQGVAIIYISH---RLDEVFEIADRITVLRDGRVVGTRPT----AAETSEDELVRL 241
|
Length = 500 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 3e-15
Identities = 39/96 (40%), Positives = 62/96 (64%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
E+ ++ Y +LK I+ F G +VG +G+GK+TLI + RL++P GSILI
Sbjct: 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62
Query: 1277 DGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD 1312
DGVDI ++ + DLR K+ ++ Q+P LF G+V+ N++
Sbjct: 63 DGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIE 98
|
Length = 241 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 4e-15
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKG 1235
+L I S RI + + P + ++ + + L + Y VLKG
Sbjct: 303 HLGQVIASARRINEITE---QKPEVTFPTTSTAAAD-QVSLTLNNVSFTYPDQPQPVLKG 358
Query: 1236 ITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295
++ G +V ++GRTG GK+TL+ L R +P G IL++G I LR +S+
Sbjct: 359 LSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISV 418
Query: 1296 IPQEPTLFRGSVRTNL 1311
+ Q LF ++R NL
Sbjct: 419 VSQRVHLFSATLRDNL 434
|
Length = 574 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 4e-15
Identities = 59/239 (24%), Positives = 108/239 (45%), Gaps = 54/239 (22%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYGS---- 659
+ + GV+ ++K + + + G G+GKS L AI+G +PK + G + G
Sbjct: 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLS 76
Query: 660 -------------IAYVSQ---TSWIQSGSIRDNI-----LYGKPMDKA-RYDKAIKACA 697
IA + Q TS +I D I L+GK + K ++AI+
Sbjct: 77 LSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLE 136
Query: 698 L------DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751
L ++ + ++ H LSGG +QR+ +A A+ + + + D+P +A+D
Sbjct: 137 LVGIPDPERRLKSYPH-----------ELSGGMRQRVMIAMALALNPKLLIADEPTTALD 185
Query: 752 AHTAA---TLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
A L E + + +IL+TH + ++E+ DR+ V+ G+I + G +E+
Sbjct: 186 VTVQAQILDLLKE--LQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242
|
Length = 316 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 4e-15
Identities = 61/197 (30%), Positives = 94/197 (47%), Gaps = 45/197 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
L+ +NLDI + A+ G G GKS+LL + L ++ G V L G Y +
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82
Query: 668 WI----------QS-----GSIRDNILYG--------KPMDKARYDKAIKACAL-D--KD 701
+ Q SI DN+ YG K +D+ + ++K AL D KD
Sbjct: 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE-IVESSLKKAALWDEVKD 141
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ + L LSGGQ+QR+ +ARA+ ++ L D+P SA+D +TL E
Sbjct: 142 ----------RLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP--ISTLKIE 189
Query: 762 CVMAALEKK-TVILVTH 777
++ L+KK T+++VTH
Sbjct: 190 ELITELKKKYTIVIVTH 206
|
Length = 253 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 5e-15
Identities = 48/217 (22%), Positives = 90/217 (41%), Gaps = 32/217 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------SIAYVSQT 666
+R V+ + + + + G GAGK++LL I + SG V + G +
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77
Query: 667 SWIQSG-------SIRDNILY-------GKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+ + R+N+ Y + KAR + K L + ++
Sbjct: 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD--------- 128
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV 772
+R S G KQ++ +ARA+ +D I + D+P S +D T + E + V
Sbjct: 129 --RRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAV 186
Query: 773 ILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLA 808
I +H ++ + + DR++VL G++ G+ + L
Sbjct: 187 IFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223
|
Length = 245 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 5e-15
Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 30/213 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI-----AYVSQTS 667
L GV+LDIK + + G G GK++LL I G SG + L G + +
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN 75
Query: 668 WI-QSG------SIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
+ Q+ ++ +NI +G K + KA + + ALD L R
Sbjct: 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAE-ALDLV-------QLEGYANRK 127
Query: 718 LN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVI 773
+ LSGGQ+QR+ +ARA+ N+ + L D+P A+D + E + L+K+ T +
Sbjct: 128 PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE--LKRLQKELGITFV 185
Query: 774 LVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
VTH Q E L+ DRI V+ G+I Q G +E+
Sbjct: 186 FVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 6e-15
Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 60/188 (31%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
L+ ++L I +I + G GAGKS+LL I GE+ G V ++
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV---------- 63
Query: 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730
I Y F+ LSGG+K R+ L
Sbjct: 64 ------KIGY------------------------FEQ------------LSGGEKMRLAL 81
Query: 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSEV-DR 787
A+ + + ++ L D+P + +D + L AL+ TVILV+H FL +V +
Sbjct: 82 AKLLLENPNLLLLDEPTNHLDLESIEALEE-----ALKEYPGTVILVSHDRYFLDQVATK 136
Query: 788 ILVLEGGQ 795
I+ LE G+
Sbjct: 137 IIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 7e-15
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ + + Y VLK ++ +G ++ ++GR+GSGK+TL+ L ++P G I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
+DGV + + K L +S++ Q P LF ++R NL
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL 95
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 7e-15
Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 44/217 (20%)
Query: 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----SIAYVSQTSWI-Q 670
+L + + +A+ G GAGKS+LL I G SG + + G S S + Q
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 671 SG------SIRDNILYG-KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL----- 718
++ NI G P +K A ++ ++G G
Sbjct: 79 ENNLFAHLTVAQNIGLGLSP--------GLKLNAEQREKV---EAAAAQVGLAGFLKRLP 127
Query: 719 -NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-------EKK 770
LSGGQ+QR+ LAR + + I L D+PFSA+D L E M AL K
Sbjct: 128 GELSGGQRQRVALARCLVREQPILLLDEPFSALD----PALRAE--MLALVSQLCDERKM 181
Query: 771 TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T+++VTH E + + DR++ L+ G+I G+ QELL
Sbjct: 182 TLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 8e-15
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+R L RY L I+ T +G G++G G+GKTTLI + L++P G I
Sbjct: 1 IEVRNLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLD 1312
+ G DI ++++ ++ +P+EP+L+ +VR NL
Sbjct: 59 VLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENLK 95
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 9e-15
Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 11/126 (8%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
EL+ L Y A L I+ T +G V +VG GSGK+TL+ L L+ P G +L+
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 1277 DGVDICSMGLKDLRVKLSIIPQEPT--LFRGSVRT----NLDPLGLYSDDEIWK----AL 1326
DG D+ + LK+LR K+ ++ Q P F +V L+ LGL ++EI + AL
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-PEEEIEERVEEAL 119
Query: 1327 EKCQLK 1332
E L+
Sbjct: 120 ELVGLE 125
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 9e-15
Identities = 62/194 (31%), Positives = 93/194 (47%), Gaps = 38/194 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
L+ +NLDI+ Q A+ G G GKS+ L + L KI G V L G Y S
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 668 WIQ---------------SGSIRDNILYGKPM----DKARYD----KAIKACALDKDINN 704
Q SI DN+ YG DK + D K++K AL ++ +
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD 138
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
+ + L LSGGQ+QR+ +ARA+ + ++ L D+P SA+D +TL E ++
Sbjct: 139 -------RLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDP--ISTLKIEELI 189
Query: 765 AALEKK-TVILVTH 777
L+K T+++VTH
Sbjct: 190 QELKKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 1e-14
Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 19/220 (8%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL------GEIPKISG----TVNLY---GS 659
L ++ I Q++ + G G+GKS+LL A L G+I +I G +V L +
Sbjct: 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDI-QIDGVSWNSVPLQKWRKA 78
Query: 660 IAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKACALDKDINNF-DHGDLTEIGQRG 717
+ Q +I SG+ R N+ YGK D+ + K + L I F D + G
Sbjct: 79 FGVIPQKVFIFSGTFRKNLDPYGKWSDEEIW-KVAEEVGLKSVIEQFPGQLDFVLV-DGG 136
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
LS G KQ + LAR+V + A I L D+P + +D T + + + A TVIL H
Sbjct: 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVI-RKTLKQAFADCTVILSEH 195
Query: 778 QVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
++E + E R LV+E ++ Q + Q+LL + F+Q ++
Sbjct: 196 RIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAIS 235
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 1e-14
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+R L +Y + L G++ G G++G G+GKTTL+ L L++P G IL
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLD 1312
+ G D+ +R ++ +PQEP+L+ +VR NL+
Sbjct: 64 VLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLE 100
|
Length = 293 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-14
Identities = 52/237 (21%), Positives = 99/237 (41%), Gaps = 53/237 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW---- 668
+ V+ D++ + + + G G+GKS+L + G +P SG++ G ++
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 669 --IQ------------SGSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
IQ ++ D + L +A A L+ L
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLE----------LV 416
Query: 712 EIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+ L+ LSGGQ+QR+ +ARA+ + + + D+P SA+D A + N ++
Sbjct: 417 GLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN--LLKD 474
Query: 767 LEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGN-----------YQELLLA 808
L+++ T + ++H + + + DR+ V+ G+I + G Y LLA
Sbjct: 475 LQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531
|
Length = 539 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 40/195 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAY----- 662
L +++ I + A G G GKS+LL L + +I G + L G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100
Query: 663 ----------VSQTSWIQSGSIRDNILYG---------KPMDKARYDKAIKACALDKDIN 703
V Q SI +N++YG + +D+A +++++ AL ++
Sbjct: 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEA-VERSLRGAALWDEVK 159
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ H + LSGGQ+QR+ +ARA+ + ++ L D+P SA+D +TL E +
Sbjct: 160 DRLH-------ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP--ISTLKIEEL 210
Query: 764 MAAL-EKKTVILVTH 777
+ L K T+++VTH
Sbjct: 211 ITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 1e-14
Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 27/205 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---------IAYV 663
L ++ ++ + + G GAGK++ + ILG I SG V G I Y+
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75
Query: 664 SQTSWI-QSGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
+ + + D ++Y G ++AR +D+ + + + +R
Sbjct: 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR-------IDEWLERLELSEYAN--KRV 126
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVT 776
LS G +Q++Q AV +D ++ + D+PFS +D L + + KTVIL T
Sbjct: 127 EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVILST 185
Query: 777 HQVEFLSEV-DRILVLEGGQITQSG 800
HQ+E + E+ DR+L+L G+ G
Sbjct: 186 HQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 51/214 (23%), Positives = 82/214 (38%), Gaps = 41/214 (19%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SIA 661
VN WA + G GAGK++LL + GE P SG V L G I
Sbjct: 54 VNPGEHWA----IVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG 109
Query: 662 YVS-------QTSW-----IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGD 709
VS + + SG +Y + + A L + G
Sbjct: 110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQW---LLE-----LLGA 161
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN--ECVMAAL 767
+ +LS G+++R+ +ARA+ D ++ + D+P +D L N E + A+
Sbjct: 162 KHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASP 221
Query: 768 EKKTVILVTHQV-EFLSEVDRILVLEGGQITQSG 800
++ VTH E L+L+ G++ G
Sbjct: 222 GAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 30/219 (13%)
Query: 604 WDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG-- 658
W+ I L V+L ++ Q +A+ GS G+GK++LL AI G + SG + G
Sbjct: 16 WNKYARI--LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP 73
Query: 659 --------SIAYVSQTS-WIQSGSIRDNILY------GKPMDKARYDKAIKACALDKDIN 703
+AYV Q + ++R+ + Y + A K L +D+
Sbjct: 74 RKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAI-RKKRVEDVLLRDLA 132
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
G G +SGG+++R+ +A + D + + D+P S +D+ TA L +
Sbjct: 133 LTRIG-----GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS 187
Query: 764 MAALEKKTVILVTHQ--VEFLSEVDRILVLEGGQITQSG 800
A + VIL HQ + DRIL+L G+I SG
Sbjct: 188 QLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 3e-14
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE++ L + VLKGI+ + +G V ++G +GSGK+TL+ L L EP GSI
Sbjct: 3 IEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 1276 IDGVDICSMG-LKDLRVKLSIIPQEPTLF 1303
+DG D+ + LR K+ ++ Q+ LF
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLF 89
|
Length = 240 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 3e-14
Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 39/220 (17%)
Query: 605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYG-SIA 661
+ +L L+GV+L I + +A+ GS G+GKS+LL+ +LG + P SG V G S++
Sbjct: 13 EGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLH-LLGGLDNPT-SGEVLFNGQSLS 70
Query: 662 YVSQTSWIQSGSIRD----------------NILYGKPM-----DKARYDKAIKACALDK 700
+S + +R+ L M K+ + +A + +
Sbjct: 71 KLSSN---ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLE 127
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
+ +H I R LSGG++QR+ +ARA+ N + L D+P +D + A +F
Sbjct: 128 KVG-LEH----RINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF- 181
Query: 761 ECVMAAL--EKKT-VILVTHQVEFLSEVDRILVLEGGQIT 797
+M L E T ++VTH +E ++DR+L ++ GQ+
Sbjct: 182 -DLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 3e-14
Identities = 59/200 (29%), Positives = 96/200 (48%), Gaps = 27/200 (13%)
Query: 626 IAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQT---SWIQSGSI 674
+ + G GAGK++LL AILG IP GTV + G+ I YV Q +W S+
Sbjct: 9 LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISV 68
Query: 675 RDNILYGK-----PMDKARY-DKAIKACALDKDINNFDHGDLTEIGQRGL-NLSGGQKQR 727
++ G+ + + D A AL + LTE+ R + LSGGQ+QR
Sbjct: 69 AHTVMSGRTGHIGWLRRPCVADFAAVRDALRR-------VGLTELADRPVGELSGGQRQR 121
Query: 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ-VEFLSEVD 786
+ +ARA+ + L D+PF+ +D T L + A +++ TH + ++ D
Sbjct: 122 VLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCD 181
Query: 787 RILVLEGGQITQSGNYQELL 806
R+++L G++ G Q+L
Sbjct: 182 RVVLLN-GRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 3e-14
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 39/219 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYGS----------- 659
L ++L+I+ + +A+ G G GK++LL AI G + ++G + +
Sbjct: 21 LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80
Query: 660 IAYVSQT-SWIQSGSIRDNILYG---KPMDKA----RYDKAIKACALDKDINNFDHGDLT 711
+A + Q + + DN+ +G + M KA R A+K L +
Sbjct: 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA---- 136
Query: 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK- 770
LSGG +QRI +ARA+ + D+ L D+P SA+DA+ A + E +AAL ++
Sbjct: 137 -------QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREE--IAALHEEL 187
Query: 771 ---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
T++ VTH Q + L+ D+ +++ G++ G Q L
Sbjct: 188 PELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 4e-14
Identities = 70/247 (28%), Positives = 121/247 (48%), Gaps = 30/247 (12%)
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL------ 644
S S+K ++ + PEL P L G++ +I ++K+ + G GAGKSS+L A+
Sbjct: 1234 SSGSIKFEDVVLRYRPELP-PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE 1292
Query: 645 -GEIP----KIS--GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACA 697
G I IS G ++L + + Q + SG++R N+ + A ++++
Sbjct: 1293 RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAH 1352
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
L I G E+ + G N S GQ+Q + LARA+ + I + D+ +AVD T A
Sbjct: 1353 LKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1412
Query: 758 L-------FNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL-AG 809
+ F C M +++ H++ + + DRILVL+ G++ + + LL G
Sbjct: 1413 IQKTIREEFKSCTM--------LIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEG 1464
Query: 810 TAFEQLV 816
+AF ++V
Sbjct: 1465 SAFSKMV 1471
|
Length = 1622 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 4e-14
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE++ L Y P LK + ++G V ++G +G+GK+TL+ +L LV+P G IL
Sbjct: 4 IEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 1276 IDGVDICSM---GLKDLRVKLSIIPQEPTLF-RGSVRTNL 1311
+GV I + L+ LR + +I Q+ L R SV N+
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENV 102
|
Length = 258 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 4e-14
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IELR L + VLKG+ G + ++G +GSGK+TL+ + L+ P G +L
Sbjct: 1 IELRGLTKSFGGRT--VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 1276 IDGVDICSMG---LKDLRVKLSIIPQEPTLF 1303
IDG DI + L LR ++ ++ Q LF
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALF 89
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 4e-14
Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 45/221 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
LRGV+L++ + V G G GK++LL ++G +P SG++ L G
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75
Query: 660 -IAYVSQTSWIQSG-SIRDNILYGKPMD-KARYDKAIKACALD-----KDINNFDHGDLT 711
IAYV Q I ++ +N+L G + R + I + K++
Sbjct: 76 GIAYVPQGREIFPRLTVEENLLTG--LAALPRRSRKIPDEIYELFPVLKEM--------- 124
Query: 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV------DAHTAATLFNECVMA 765
+G+RG +LSGGQ+Q++ +ARA+ + L D+P + D +
Sbjct: 125 -LGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRR-----LR 178
Query: 766 ALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
A ++LV ++F E+ DR V+E G++ SG EL
Sbjct: 179 AEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 5e-14
Identities = 54/213 (25%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
+ GV+L +K + + + G GAGK++ Y I+G + SG + L G
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 659 SIAYVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI-GQR 716
I Y+ Q + I ++ +NIL ++ K + L++ + F +T + +
Sbjct: 76 GIGYLPQEASIFRKLTVEENIL--AVLEIRGLSKKEREEKLEELLEEFH---ITHLRKSK 130
Query: 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV-ILV 775
+LSGG+++R+++ARA+ + L D+PF+ VD + ++ L+ + + +L+
Sbjct: 131 ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQK--IIKILKDRGIGVLI 188
Query: 776 T-HQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
T H V E LS DR ++ G++ G +E+
Sbjct: 189 TDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 5e-14
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 39/219 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSL---LYAILGEIP--KISGTVNLYGSIAYVSQTS 667
L+ +NL I + A+ G G GKS+ L ++ +P K++G +N GS +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 668 WI----------QSG-----SIRDNILYG--------KPMDKARYDKAIKACALDKDINN 704
+ Q G SI DN+ YG K + +K++K AL ++ +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL-FNECV 763
H + L+LSGGQ+QR+ +ARA+ + D+ L D+P SA+D +T E +
Sbjct: 148 RLH-------TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDP--VSTRKIEELI 198
Query: 764 MAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGN 801
+ EK T+++VTH ++ + V D+ G++ + +
Sbjct: 199 LKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECND 237
|
Length = 259 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 5e-14
Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 37/218 (16%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658
P + ++L++ + + G GAGK++ L + GE+ SGT + G
Sbjct: 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQ 75
Query: 659 SIAYVSQTSWIQSG-SIRDNI-----LYGKPMDKARY--DKAIKACALDKDINNFDHGDL 710
S+ Y Q + ++R+++ L G P + + + ++ L N
Sbjct: 76 SLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN------- 128
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
LSGG K+++ LA A+ + L D+P S +D + +++ ++ + +
Sbjct: 129 KRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD-LILEVRKGR 183
Query: 771 TVILVTHQ---VEFLSEVDRILVLEGGQITQSGNYQEL 805
++IL TH E L DRI ++ G++ G+ QEL
Sbjct: 184 SIILTTHSMDEAEALC--DRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 6e-14
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+EL+ + RY VL ++ G V ++G +GSGK+TL+ + L EP GSIL
Sbjct: 1 LELKNVSKRY--GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1276 IDGVDICSMG--LKDLRVKLSIIPQEPTLFRG-SVRTNL 1311
IDG D+ + L LR ++ ++ Q+ LF +V N+
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENI 97
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 6e-14
Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 55/203 (27%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
+R V+ +++ + + + G VG G++ L A+ G P SG + L G
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 660 -IAYVS----QTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714
IAYV + + S+ +NI +
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENIA---------------------------------LS 102
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL 774
LSGG +Q++ LAR + D + + D+P VD A ++ A K V+L
Sbjct: 103 SL---LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLL 159
Query: 775 VTHQV-EFLSEVDRILVLEGGQI 796
++ ++ E L DRILV+ G+I
Sbjct: 160 ISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 7e-14
Identities = 58/237 (24%), Positives = 108/237 (45%), Gaps = 24/237 (10%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658
L GV+L ++ + + G GAGK++LL AI G + +GTV + G
Sbjct: 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAA 75
Query: 659 --SIAYVSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKA--CALDKDINNFDHGDLTEI 713
+A V Q TS +R + G+ ++R+D + A+++ + + +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAME---RTGVAQF 132
Query: 714 GQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV 772
R + +LSGG++QR+ LARA+ + L D+P +++D + + KT
Sbjct: 133 ADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTA 192
Query: 773 ILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT---AFEQLVNAHRDAITG 825
+ H ++ + D +++L G++ +G ++L A T AF+ D TG
Sbjct: 193 VAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAFDARTAVGTDPATG 249
|
Length = 402 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 9e-14
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 39/226 (17%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI--LGE-IPK--ISGTVNLYGSIAYVSQT 666
L V+LD + A+ G G+GKS+LL +I + + P+ I+G++ G Y +T
Sbjct: 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79
Query: 667 SWIQ---------------SGSIRDNILYGKPM----DKARYDKAIKACALDKDINNFDH 707
+ SI +N++YG + DK D+A++ I +
Sbjct: 80 DTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD--- 136
Query: 708 GDLTEIGQR----GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
E+ R L LSGGQ+QR+ +AR + I L D+P SA+D +A + E
Sbjct: 137 ----EVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI--EET 190
Query: 764 MAALEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLL 807
+ L+ T++LVT ++ S + DR G + + + +++ +
Sbjct: 191 LLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236
|
Length = 252 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 27/104 (25%), Positives = 57/104 (54%), Gaps = 12/104 (11%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
+E++ L + + V L ++ + +G +G+VG +GSGK+TL A+ L++P GS
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1274 ILIDGVDICSMGLKDLRV---KLSIIPQEPTLFRGSVRTNLDPL 1314
I+ DG D+ + + ++ ++ ++ Q+P ++L+P
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP-------MSSLNPR 98
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 27/194 (13%)
Query: 627 AVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------IAYVSQTS---WIQSGS 673
A+ G G+GKS+L A++G + SG +++ G +AYV Q+ W
Sbjct: 37 ALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVL 96
Query: 674 IRDNILYGK--PMDKAR----YDKAIKACALDK-DINNFDHGDLTEIGQRGLNLSGGQKQ 726
+ D ++ G+ M R D+ I AL + D+ F H +IG+ LSGGQK+
Sbjct: 97 VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH---RQIGE----LSGGQKK 149
Query: 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVD 786
R+ LARA+ + L D+PF+ VD T A + + E KT+++ TH + ++E
Sbjct: 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFC 209
Query: 787 RILVLEGGQITQSG 800
V+ G + SG
Sbjct: 210 DYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 1e-13
Identities = 65/209 (31%), Positives = 101/209 (48%), Gaps = 18/209 (8%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-----------IA 661
L ++LDI Q +A+ G G+GK++LL I G + SG + +G+ +
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77
Query: 662 YVSQT-SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNF-DHGDLTEIGQR-GL 718
+V Q + + ++ DNI +G + R + A A+ + + L + R
Sbjct: 78 FVFQHYALFRHMTVFDNIAFGLTVLPRR--ERPNAAAIKAKVTQLLEMVQLAHLADRYPA 135
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTH 777
LSGGQKQR+ LARA+ + I L D+PF A+DA L E K T + VTH
Sbjct: 136 QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTH 195
Query: 778 QVEFLSEV-DRILVLEGGQITQSGNYQEL 805
E EV DR++V+ G I Q+G ++
Sbjct: 196 DQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 44/246 (17%)
Query: 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE 646
L + S+ G F A L V+L+I+ + + + G G+GKS+L + G
Sbjct: 3 LLSVRNLSIVYGGGKF------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL 56
Query: 647 IPKISGTVNLYGS--------------IAYVSQ---TSWIQSGSIRDNI---LYGKPMDK 686
SG++ L G + V Q +S ++ + L + K
Sbjct: 57 EKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSK 116
Query: 687 A--RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
+ R + + L + +R LSGGQ+QRI +ARA+ + + + D
Sbjct: 117 SQQRIAELLDQVGLPPSFLD----------RRPHELSGGQRQRIAIARALIPEPKLLILD 166
Query: 745 DPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQ---VEFLSEVDRILVLEGGQITQSG 800
+P SA+D A + N + E+ T + ++H VE + DRI V++ GQI + G
Sbjct: 167 EPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC--DRIAVMDNGQIVEIG 224
Query: 801 NYQELL 806
+ELL
Sbjct: 225 PTEELL 230
|
Length = 252 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 42/243 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659
L ++L + + A+ G G GKS+LL + SGTV L
Sbjct: 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77
Query: 660 IAYVSQTSWIQSG-SIRDNILYGK-----------PMDKARYDKAIKACALDKDINNFDH 707
+A + Q G ++R+ + YG+ D AR ++A++ ++
Sbjct: 78 LALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-------- 129
Query: 708 GDLTEIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+ R L +LSGGQ+QR LA + D + L D+P + +D + L
Sbjct: 130 ----HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN 185
Query: 767 LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL---LAGTAFEQLVNAHRDA 822
+ KTV+ V H + S D ++VL G + G +E++ L T F+ H +
Sbjct: 186 TQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFDVEAEIHPEP 245
Query: 823 ITG 825
++G
Sbjct: 246 VSG 248
|
Length = 255 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
IE L RY LK ++ +G RV ++G GSGK+TL+ L L++P G +
Sbjct: 3 MIEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 1275 LIDGVDICSM-GLKDLRVKLSIIPQEPT--LFRGSVRTNLD--PLGL-YSDDEIWK---- 1324
L+DG+D S L +LR K+ ++ Q P LF +V + L +EI +
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 1325 ALEKCQLKTTISSLPNKLDSSG 1346
ALE L+ + P L SG
Sbjct: 122 ALELVGLEELLDRPPFNL--SG 141
|
Length = 235 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 34/210 (16%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA 661
+ + + + GV+ IK + + + G G GKS+L ILG SG + G
Sbjct: 18 KGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG--- 74
Query: 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD-INNFDHGDLTEIGQRGLNL 720
+D K + R + ++ L ++ + + H L
Sbjct: 75 -------------KDITKLSKEERRERVLELLEKVGLPEEFLYRYPH-----------EL 110
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTH 777
SGGQ+QRI +ARA+ + + + D+P SA+D A + N ++ L+++ T + ++H
Sbjct: 111 SGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILN--LLKDLQEELGLTYLFISH 168
Query: 778 QVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+ + + DRI V+ G+I + G +E+
Sbjct: 169 DLSVVRYISDRIAVMYLGKIVEIGPTEEVF 198
|
Length = 268 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 58/204 (28%), Positives = 97/204 (47%), Gaps = 39/204 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
L+G++LD + A+ G G GKS+ L + L I+G V+L G Y
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 668 WIQ---------------SGSIRDNILYGKPM----DKARYDKAI----KACALDKDINN 704
+Q SI +N++YG + DKA D+A+ K A+ ++ +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
H + L+LSGGQ+QR+ +AR + D+ L D+P SA+D ++ + N ++
Sbjct: 141 HLH-------ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIEN-MLL 192
Query: 765 AALEKKTVILVTHQVEFLSEVDRI 788
++ T+ILVTH + + RI
Sbjct: 193 ELRDQYTIILVTHS---MHQASRI 213
|
Length = 252 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 2e-13
Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 45/247 (18%)
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL---GEI 647
S + V + GN+ L G++LD + + A+ G G GKS+ L + +I
Sbjct: 6 SAKDVHLSYGNYE--------ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDI 57
Query: 648 P--KISGTV-----NLYGS----------IAYVSQTSWIQSGSIRDNILYG--------K 682
KI+G + N+YGS + V Q S+ DN+ YG K
Sbjct: 58 ENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDK 117
Query: 683 PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742
+ R ++++K A+ K+ + + + SGGQ+QRI +ARA+ + L
Sbjct: 118 ELIDQRVEESLKQAAIWKETKD-------NLDRNAQAFSGGQQQRICIARALAVRPKVVL 170
Query: 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGN 801
D+P SA+D +++ + E +M + T I+VTH ++ + D+ L G + ++G
Sbjct: 171 LDEPTSALDPISSSEI-EETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGP 229
Query: 802 YQELLLA 808
+E+ +A
Sbjct: 230 TEEMFIA 236
|
Length = 251 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 26/216 (12%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658
L V+LDI ++ G GAGKS+LL + + K SG + + G
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74
Query: 659 -SIAYVSQTSWIQSG-SIRDNILYGK-PMDKARYDKAIKACALDKDINN--FDHGDLTEI 713
++ + Q + I S ++RD + +G+ P + R K D+ I N ++ L ++
Sbjct: 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKE------DRRIINEAIEYLHLEDL 128
Query: 714 GQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKT 771
R L+ LSGGQ+QR +A + D D L D+P + +D + + A E KT
Sbjct: 129 SDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKT 188
Query: 772 VILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806
+++V H + F S D I+ L+ G++ + G+ E++
Sbjct: 189 IVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224
|
Length = 252 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I++ + Y + LK ++ +EG V ++G GSGK+T+ L L++P G I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEP 1300
IDG+ I LK++R K+ II Q P
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNP 92
|
Length = 271 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 17/128 (13%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+ L Y PN LK I + G V ++G +G+GK+TL+ + RLVEP+ GSIL
Sbjct: 2 LEVENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 1276 IDGVDICSMGLKDL---RVKLSIIPQEPTLF-RGSVRTNL------------DPLGLYSD 1319
++G DI + K L R ++ +I Q L R +V N+ LG +S+
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSE 120
Query: 1320 DEIWKALE 1327
++ +AL
Sbjct: 121 EDKERALS 128
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 3e-13
Identities = 66/210 (31%), Positives = 99/210 (47%), Gaps = 25/210 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---------IAYV 663
L+GVNL I+ + I++ G G GKS+LL I G SG V L G +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 664 SQTSWIQSGSIRDNILYGKPMDKARYD--KAIKACALDKDIN--NFDHGDLTEIGQRGLN 719
S + ++R+NI +D+ D K+ + +++ I GQ
Sbjct: 61 QNYSLLPWLTVRENIALA--VDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQ---- 114
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQ 778
LSGG KQR+ +ARA+ + L D+PF A+DA T L E + E + TV++VTH
Sbjct: 115 LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
Query: 779 VE---FLSEVDRILVLEGGQITQSGNYQEL 805
V+ LS DR+++L G G E+
Sbjct: 175 VDEALLLS--DRVVMLTNGPAANIGQILEV 202
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 3e-13
Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 32/213 (15%)
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-------------GSI 660
+ +NLDI + + G G GKS+LL I G SG +L+ +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG--DLFIGEKRMNDVPPAERGV 77
Query: 661 AYVSQTSWIQSG-SIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
V Q+ + S+ +N+ +G + K ++ + A ++ H L + ++
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVA---EVLQLAH--LLD--RK 130
Query: 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVI 773
LSGGQ+QR+ + R + + ++L D+P S +DA + E ++ L K+ T+I
Sbjct: 131 PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE--ISRLHKRLGRTMI 188
Query: 774 LVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
VTH QVE ++ D+I+VL+ G++ Q G EL
Sbjct: 189 YVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 4e-13
Identities = 73/245 (29%), Positives = 119/245 (48%), Gaps = 41/245 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLL--YAILGE-IP--KISGTV-----NLYGS--- 659
++ V LDI Q A G G GKS++L + L + IP ++ G V NLY
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 660 -------IAYVSQTSWIQSGSIRDNILYGKPMDKARYD------KAIKACALDKDINNFD 706
I V Q SI DNI YG ++ + D ++++ AL ++ +
Sbjct: 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-- 143
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
++ Q GL+LSGGQ+QR+ +ARA+ ++ L D+P SA+D +TL E +M
Sbjct: 144 -----KLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDP--ISTLRIEELMHE 196
Query: 767 L-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN-----AHR 820
L E+ T+I+VTH ++ + V + ++T+ G L+ E++ N A R
Sbjct: 197 LKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNSPQQQATR 256
Query: 821 DAITG 825
D ++G
Sbjct: 257 DYVSG 261
|
Length = 264 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 4e-13
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 40/193 (20%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI--------AY 662
P L +NL ++ + + V G G GK++LL I G +P G++ L G
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGV 74
Query: 663 VSQTS----WIQSGSIRDNILYG---KPMDKA-RYDKAIKACALDKDINNFDHGDLTEIG 714
V Q W +++DN+ +G ++K R + A + L
Sbjct: 75 VFQNEGLLPWR---NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKV---------GLEGAE 122
Query: 715 QRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK---- 769
+R + LSGGQ+QR+ +ARA+ + + L D+PF A+DA T E + L K
Sbjct: 123 KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT-----REQMQTLLLKLWQE 177
Query: 770 --KTVILVTHQVE 780
K V+L+TH +E
Sbjct: 178 TGKQVLLITHDIE 190
|
Length = 255 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 5e-13
Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 35/235 (14%)
Query: 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652
++ +E ++S + L+ +++ + + G GAGKS+L+ I I G
Sbjct: 2 NEIEFKEVSYSSFGKE---ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG 58
Query: 653 TV-------------NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAI----KA 695
++ +L I V Q + G+++DNI YG PM K + +
Sbjct: 59 SILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYG-PMLKGEKNVDVEYYLSI 117
Query: 696 CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755
L+K+ D NLSGG+ QR+ +AR + N+ ++ L D+P SA+D T+
Sbjct: 118 VGLNKEYATRDVK----------NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-TS 166
Query: 756 ATLFNECVMAALEKK--TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLL 807
+ E ++ K TVI +TH +E + D L G + + +
Sbjct: 167 TEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221
|
Length = 241 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 9e-13
Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 8/150 (5%)
Query: 1201 VEDKRPPSSWP----FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGK 1256
V + P+ P KG +E R + + N+ + ++ G V +VG TG+GK
Sbjct: 316 VFQREEPADAPELPNVKGAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTGAGK 374
Query: 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL 1316
TTLI+ L R+ +P G ILIDG+DI ++ + LR ++ + Q+ LF S+R N+ LG
Sbjct: 375 TTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIR-LGR 433
Query: 1317 --YSDDEIWKALEKCQLKTTISSLPNKLDS 1344
+D+E+++A + I N D+
Sbjct: 434 EGATDEEVYEAAKAAAAHDFILKRSNGYDT 463
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-12
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 1216 IELRQLKIRY---RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
IEL + + L ++ +G G++G +G+GK+TL+ + L P G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1273 SILIDGVDICSM---GLKDLRVKLSIIPQEPTLFRGSVRT 1309
S+ +DG D+ ++ L+ LR K+ +I Q L S RT
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL--SSRT 99
|
Length = 339 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 52/237 (21%), Positives = 103/237 (43%), Gaps = 31/237 (13%)
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650
+K++ +FS+ L+ V+ +I + +A+ G G+GKS++ + G +
Sbjct: 4 KSVMIKVENVSFSYPNSEN-NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ 62
Query: 651 SGTVNLYGSIAYVSQTSWIQS---------------GSIRDNILYG---KPMDKARYDKA 692
SG + + G I+ ++ D+I +G K + +
Sbjct: 63 SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDI 122
Query: 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
I A + ++ + + NLSGGQKQR+ +A + + +I +FD+ S +D
Sbjct: 123 IDDLAKKVGMEDY-------LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 753 HTAATLFNECVMAALEK---KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ +M L K KT+I +TH ++ D+++V G++ G +E+L
Sbjct: 176 KGKREIKK--IMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEIL 230
|
Length = 271 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 2e-12
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+ L Y + +L G++ T EG V ++GR G+GKTTL+ + L+ P GSI
Sbjct: 1 LEVENLNAGYGKSQ--ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 1276 IDGVDICSMGLKDLRVKLSI--IPQEPTLFRG-SVRTNLDPLGLY 1317
DG DI + R + I +P+ +F +V NL LG Y
Sbjct: 59 FDGRDITGLPP-HERARAGIGYVPEGRRIFPELTVEENLL-LGAY 101
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-12
Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 17/109 (15%)
Query: 1216 IELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP---- 1269
+E+ L + + ++ ++ G +G+VG +GSGK+TL AL L+
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 1270 AGGSILIDGVDICSMGLKDLRV----KLSIIPQEPTLFRGSVRTNLDPL 1314
G +++DG D+ + +++R ++++I Q+P T+L+P+
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM-------TSLNPV 107
|
Length = 539 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 64/226 (28%), Positives = 96/226 (42%), Gaps = 44/226 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYA------------ILGEIPKISG-------- 652
L +NLDI + A G G GKS+ L + GE+ I G
Sbjct: 21 LFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL-DIDGIDVYSVDT 79
Query: 653 -TVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
V L + V Q SI DN+ YG + +K K ++ LT
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNK--------KKLDEIVEKSLT 131
Query: 712 EIG----------QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+G LSGGQ+QR+ +ARA+ + L D+P SA+D AT E
Sbjct: 132 SVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP--VATNVIE 189
Query: 762 CVMAALEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
++ L+K T+I+VTH ++ +V DR+ + G+I + QE+
Sbjct: 190 NLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
|
Length = 251 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 52/215 (24%), Positives = 103/215 (47%), Gaps = 24/215 (11%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658
+ V+L++ + + + G GAGK++ Y I+G + SG + L
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 659 --SIAYVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI-G 714
I Y+ Q + I ++ DNI+ + + KA + LD + F +T +
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFH---ITHLRD 134
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV-I 773
+ +LSGG+++R+++ARA+ + L D+PF+ VD + ++ L+ + + +
Sbjct: 135 SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR--IIKHLKDRGIGV 192
Query: 774 LVT-HQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
L+T H V E L DR ++ G++ G+ +E++
Sbjct: 193 LITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 25/185 (13%)
Query: 633 GAGKSSLLYAILGEIPKISGTV------------NLYGSIAYVSQT-SWIQSGSIRDNIL 679
GAGK++L+ + P SGT+ L I Y+ Q + ++R+ +
Sbjct: 35 GAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLD 94
Query: 680 YG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736
Y K + + + + +N D +IG LSGG ++R+ +A+A+
Sbjct: 95 YIAWLKGIPSKEVKARV--DEVLELVNLGDRAK-KKIGS----LSGGMRRRVGIAQALVG 147
Query: 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQ 795
D I + D+P + +D N E + VIL TH VE + + +++ VL G+
Sbjct: 148 DPSILIVDEPTAGLDPEERIRFRNLLSELG-EDRIVILSTHIVEDVESLCNQVAVLNKGK 206
Query: 796 ITQSG 800
+ G
Sbjct: 207 LVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 30/201 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-SGTVNLYGS------------ 659
L +NL I+ + A+ G G+GKS+LL I+G + K SG V L G
Sbjct: 14 LDDLNLTIEKGKMYAIIGESGSGKSTLL-NIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 660 -----IAYVSQT-SWIQSGSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
+ Y+ Q + I++ ++ +N+ L K + K + K +N
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK--- 129
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
Q+ LSGG++QR+ LARA+ + L D+P ++D + + + E K
Sbjct: 130 ----QKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGK 185
Query: 771 TVILVTHQVEFLSEVDRILVL 791
T+I+VTH E + DR++ L
Sbjct: 186 TIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 2e-12
Identities = 64/202 (31%), Positives = 94/202 (46%), Gaps = 38/202 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAY----- 662
L +NL I + A+ G G GKS+ L + L KI G V L G Y
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 663 ----------VSQTSWIQSGSIRDNILYGKPM----DKARYDK----AIKACALDKDINN 704
V Q SI DN+ YG + DK DK A+K AL ++ +
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD 139
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
++ + L LSGGQ+QR+ +AR + D+ L D+P SA+D +TL E +M
Sbjct: 140 -------DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP--ISTLKIEDLM 190
Query: 765 AALEKK-TVILVTHQVEFLSEV 785
L+K+ T+++VTH ++ S V
Sbjct: 191 VELKKEYTIVIVTHNMQQASRV 212
|
Length = 251 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 9/92 (9%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC--VMAAL--EKKTVILV 775
LSGGQ+QR+ +ARA+ + LFD+P SA+D L +E VM L E T+++V
Sbjct: 137 LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE----LRHEVLKVMQDLAEEGMTMVIV 192
Query: 776 THQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
TH++ F +V R++ ++ G+I + G+ Q L+
Sbjct: 193 THEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224
|
Length = 240 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 3e-12
Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 38/202 (18%)
Query: 623 AQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-----------SIAYVSQTSWIQ 670
+ A+ G G+GKS+LL I G E P+ SG V + G ++ + Q + +
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQ-SGRVLINGVDVTAAPPADRPVSMLFQENNLF 82
Query: 671 SG-SIRDNILYG-------KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722
+ ++ N+ G D+ +AI+ + + + LSG
Sbjct: 83 AHLTVEQNVGLGLSPGLKLTAEDR----QAIEVALARVGLAGLEK-------RLPGELSG 131
Query: 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDA---HTAATLFNECVMAALEKKTVILVTHQV 779
G++QR+ LAR + D + L D+PF+A+D L + + A K TV++VTHQ
Sbjct: 132 GERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD--LHAETKMTVLMVTHQP 189
Query: 780 EFLSEV-DRILVLEGGQITQSG 800
E + R++ L+ G+I G
Sbjct: 190 EDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-12
Identities = 60/239 (25%), Positives = 101/239 (42%), Gaps = 52/239 (21%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKI-AVCGSVGAGKSSLLYAILGEIPKISG 652
+ + + GNF+ D +P A+ I A+ G G+GK+SL+ I G G
Sbjct: 5 NFRQRLGNFALDANFTLP-----------ARGITALFGPSGSGKTSLINMIAGLTRPDEG 53
Query: 653 TVNLYG-----------------SIAYVSQTSWI-QSGSIRDNILYG-KPMDKARYDKAI 693
+ L G I YV Q + + ++R N+ YG +A++D+ +
Sbjct: 54 RIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLV 113
Query: 694 KACALDKDINNFDHGDLTEIG----QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
L I + LSGG+KQR+ + RA+ ++ L D+P ++
Sbjct: 114 ---------------ALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158
Query: 750 VDAHTAATLFNECVMAALEKKTVIL-VTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
+D + E IL V+H + E L DR++VLE G++ SG +E+
Sbjct: 159 LDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVW 217
|
Length = 352 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 3e-12
Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 29/230 (12%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISG 652
S+++ N + A L + LD + + + G GAGKSSLL + L E+P+ SG
Sbjct: 2 SIQLNGINCFYG---AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR-SG 57
Query: 653 TVNLYGSIAYVSQTSWIQSG-SIRDNI------------------LYGKPMDKARYDKAI 693
T+N+ G+ S+T ++ +R N+ L P R
Sbjct: 58 TLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC---RVLGLS 114
Query: 694 KACALDKDINNFDHGDLTEIGQR-GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
K AL + L R L+LSGGQ+QR+ +ARA+ + + LFD+P +A+D
Sbjct: 115 KDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGN 801
A + + A T ++VTH+VE + R++ +E G I + G+
Sbjct: 175 EITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
|
Length = 242 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 4e-12
Identities = 61/208 (29%), Positives = 108/208 (51%), Gaps = 23/208 (11%)
Query: 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---------KISGTVNLYGSIAYVSQTS 667
N+ +K + ++ G+G+ S ++ G+I + NL+ + VSQ
Sbjct: 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLF---SIVSQEP 1305
Query: 668 WIQSGSIRDNILYGKPMDKARYD--KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725
+ + SI +NI +GK D R D +A K A+D+ I + + T +G G +LSGGQK
Sbjct: 1306 MLFNMSIYENIKFGKE-DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQK 1364
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KTVILVTHQVEFLS 783
QRI +ARA+ + I L D+ S++D+++ L + ++ +K KT+I + H++ +
Sbjct: 1365 QRIAIARALLREPKILLLDEATSSLDSNS-EKLIEKTIVDIKDKADKTIITIAHRIASIK 1423
Query: 784 EVDRILVLEG----GQITQS-GNYQELL 806
D+I+V G Q+ G ++ELL
Sbjct: 1424 RSDKIVVFNNPDRTGSFVQAHGTHEELL 1451
|
Length = 1466 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 4e-12
Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 42/225 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAY----V 663
L+ +NL I Q A+ G G GKS+LL + L E KI+G + + G Y V
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 664 SQTSWIQSG-----------SIRDNILYG---------KPMDKARYDKAIKACALDKDIN 703
+ I+ G SI +N+ YG K +D+ +++++ AL ++
Sbjct: 79 ADLR-IKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEV-VERSLRGAALWDEVK 136
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ LSGGQ+QR+ +AR + + D+ L D+P SA+D AT E +
Sbjct: 137 -------DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDP--IATHKIEEL 187
Query: 764 MAALEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
M L+K T+++VTH ++ + DR G++ + + Q +
Sbjct: 188 MEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232
|
Length = 249 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 4e-12
Identities = 66/221 (29%), Positives = 102/221 (46%), Gaps = 48/221 (21%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-------EIPKISGTV--NLYGS- 659
++G++LD+ + I + G G GKS+LL + G EI I G V L +
Sbjct: 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI-WIGGRVVNELEPAD 75
Query: 660 --IAYVSQT-SWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
IA V Q + S+R+N+ YG + M KA ++ + A + E+
Sbjct: 76 RDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAA-----------RILEL 124
Query: 714 GQ----RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE- 768
+ LSGGQ+QR+ + RA+ + ++LFD+P S +DA V LE
Sbjct: 125 EPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLR-------VQMRLEI 177
Query: 769 -------KKTVILVTH-QVEFLSEVDRILVLEGGQITQSGN 801
K T + VTH QVE ++ DR++V+ GG Q G
Sbjct: 178 QRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGT 218
|
Length = 356 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 5e-12
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK-DLR 1290
L+G++ G V ++GR G+GKTTL+ + LV P G I+ DG DI GL R
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDI--TGLPPHER 75
Query: 1291 VKLSI--IPQEPTLF-RGSVRTNLDPLGLY 1317
+L I +P+ +F R +V NL LG Y
Sbjct: 76 ARLGIAYVPEGRRIFPRLTVEENLL-LGAY 104
|
Length = 237 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 6e-12
Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 37/224 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTV-----NLYGS--- 659
L +N+ I A+ G G GKS+ L + L E KI G V N+Y +
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 660 -------IAYVSQTSWIQSGSIRDNILYGKPM----DKARYD----KAIKACALDKDINN 704
I V QT SI DNI YG + DK + D +++K AL ++ +
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD 142
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
++ L+LSGGQ+QR+ +AR + + ++ L D+P SA+D + + E ++
Sbjct: 143 -------KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKI-EELII 194
Query: 765 AALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLL 807
E T+I+VTH ++ + DR G I + + EL
Sbjct: 195 NLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFF 238
|
Length = 254 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 6e-12
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ 670
L +N +++ +++ + G GAGK+SLL A+ G P SG +++ ++ ++ Q ++
Sbjct: 409 LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLP 468
Query: 671 SGSIRDNILYGKPMDKARYD-----KAIKACALDKDINNFD-HGDLTEIGQRGLNLSGGQ 724
G++R+ + Y P + + L D + LSGG+
Sbjct: 469 QGTLREALCY--PNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRV------LSGGE 520
Query: 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784
+QR+ AR + + D+ SA+D T L+ + + L TVI V H+ +
Sbjct: 521 QQRLAFARLLLHKPKWVFLDEATSALDEETEDRLY-QLLKEELPDATVISVGHRPTLWNF 579
Query: 785 VDRILVLEG 793
R L L
Sbjct: 580 HSRQLELLD 588
|
Length = 604 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 7e-12
Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 40/226 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-----EIPKISGTVNLYGSIAYVSQTS 667
L+GV++DI A+ G G GKS+ L + + +I G+V L G Y +
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 668 WI----------QS-----GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+ QS SIR+NI YG P + + A L +D + +L E
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYG-PRKHGDINTGLLARLLGRDDKD-AEDELVE 178
Query: 713 ---------------IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
+ L LSGGQ+QR+ +AR + D ++ L D+P SA+D A +
Sbjct: 179 RSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP-IATS 237
Query: 758 LFNECVMAALEKKTVILVTHQVEFLSEV-DRILV-LEGGQITQSGN 801
+ + E+ TV++VTH ++ + + D+ V L GG++ + +
Sbjct: 238 KIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDD 283
|
Length = 305 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 8e-12
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 1227 PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG--VDICSM 1284
P P VLKG+ G + ++G G+GK+TL+ L L+ P G++LIDG +D
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 1285 GLKDLRVKLSIIPQEP--TLFRGSVRTNLD--PLGL-YSDDEI 1322
GL + R ++ ++ Q+P LF V ++ PL L S+ E+
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEV 104
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 8e-12
Identities = 63/241 (26%), Positives = 107/241 (44%), Gaps = 53/241 (21%)
Query: 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG 645
I + ++V EG EL+I L+GV L +K + +A+ G G+GKS+LL + G
Sbjct: 7 IEVHHLSKTVGQGEG------ELSI--LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG 58
Query: 646 EIPKISGTVNLYG-----------------SIAYVSQT-SWIQSGSIRDNI-----LYGK 682
SG V L G + +V Q+ I + + +N+ L G+
Sbjct: 59 LDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE 118
Query: 683 ----PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738
A+ ++A L K + ++ LSGG++QR+ LARA
Sbjct: 119 SSADSRAGAK--ALLEAVGLGKRLTHYPA-----------QLSGGEQQRVALARAFAGRP 165
Query: 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTHQVEFLSEVDRILVLEGGQ 795
D+ D+P +D T + + ++ AL ++ T++LVTH + + DR L L G+
Sbjct: 166 DVLFADEPTGNLDRATGDKIAD--LLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGR 223
Query: 796 I 796
+
Sbjct: 224 L 224
|
Length = 228 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 9e-12
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
KG IE R + Y L+ I G V +VGR+GSGK+T+ + L R + G
Sbjct: 339 KGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEG 398
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL--DPLGLYSDDEIWKALEKCQ 1330
IL+DG D+ L LR +++++ Q LF ++ N+ YS ++I +A
Sbjct: 399 EILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAY 458
Query: 1331 LKTTISSLPNKLDS 1344
I+ + N LD+
Sbjct: 459 AMDFINKMDNGLDT 472
|
Length = 582 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 9e-12
Identities = 43/120 (35%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Query: 1216 IELRQLKIRYRPNAPL---VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I++ L Y P L + +G VG++G TGSGK+TLI L L++P G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 1273 SILIDGVDICSMG--LKDLRVKLSIIPQEP--TLFRGSVRTNLD--P--LGLYSDDEIWK 1324
I+IDGVDI L D+R K+ ++ Q P LF ++ ++ P LGL S++EI
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL-SEEEIEN 121
|
Length = 287 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 1e-11
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+EL+ L Y L ++ T G + ++G +G GKTTL+ + L P G IL
Sbjct: 1 LELKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
IDG D+ G+ R + ++ Q+ LF
Sbjct: 59 IDGRDV--TGVPPERRNIGMVFQDYALF 84
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-11
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
Query: 1215 RIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
+ +R L I Y A L ++ G +G+VG +GSGK+TL L L +P+ G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1273 SILIDGVDICSMG-LKDLRVKLSIIPQEPTL-------FRGSVRTNLDPLGLY-SDDEIW 1323
SIL+DG + K + ++ Q+P + L P GL S I
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIA 122
Query: 1324 KALE 1327
+ L+
Sbjct: 123 ELLD 126
|
Length = 252 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 52/252 (20%)
Query: 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI 647
LQ + + QEG+ D L V+ I + +A+ GS G+GKS+LL+ + G
Sbjct: 6 LQCDNLCKRYQEGSVQTD------VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD 59
Query: 648 PKISGTVNLYGSIAYVSQTSWIQSGSIRDN------------------------ILYGKP 683
SG V G +S+ S +R+ +L GK
Sbjct: 60 TPTSGDVIFNGQ--PMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKK 117
Query: 684 MDKARYDKA---IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740
+A + A L+ N+ R LSGG++QR+ +ARA+ N+ +
Sbjct: 118 KPAEINSRALEMLAAVGLEHRANH-----------RPSELSGGERQRVAIARALVNNPRL 166
Query: 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL-VTHQVEFLSEVDRILVLEGGQITQS 799
L D+P +DA A ++F + T L VTH ++ + R L + G++T
Sbjct: 167 VLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLT-- 224
Query: 800 GNYQELLLAGTA 811
EL L G
Sbjct: 225 ---AELSLMGAE 233
|
Length = 233 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 1e-11
Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 45/215 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
V+L +K + A+ G GAGKS+L+ + G SG + + G
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79
Query: 660 -IAYVSQT-SWIQSGSIRDNILYGKPMDK-ARYDKAIKACALDKDINNFDHGDLTEIGQR 716
I V Q + + ++ +NI+ G K D+ + E+ +R
Sbjct: 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRR------------QARARIKELSER 127
Query: 717 -GLN---------LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
GL LS G++QR+++ +A+Y A + + D+P + + A LF A
Sbjct: 128 YGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLA 187
Query: 767 LEKKTVILVTHQVEFLSEV----DRILVLEGGQIT 797
E KT+I +TH+ L EV DR+ VL G++
Sbjct: 188 AEGKTIIFITHK---LKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 1e-11
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 38/198 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI------------LGEIPKISGTVNLYG-- 658
L+ +N+ + Q A+ G G GKS+ L GEI VN+
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 659 --------SIAYVSQTSWIQSGSIRDNILYG--------KPMDKARYDKAIKACALDKDI 702
I+ V Q SI +N+ YG + + + R + A++ AL ++
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV 151
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ +G NLSGGQ+QR+ +ARA+ D +I LFD+P SA+D A++ E
Sbjct: 152 KD-------RLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASI-EEL 203
Query: 763 VMAALEKKTVILVTHQVE 780
+ K T+++VTH ++
Sbjct: 204 ISDLKNKVTILIVTHNMQ 221
|
Length = 265 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 2e-11
Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 18/215 (8%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSL---LYAIL----GEI-------PKISGTVNLYG 658
LR +N+ I +K+ + G GAGKSSL L+ I GEI KI G +L
Sbjct: 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKI-GLHDLRF 1360
Query: 659 SIAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
I + Q + SGS+R N+ + + D+ + A++ L ++ E + G
Sbjct: 1361 KITIIPQDPVLFSGSLRMNLDPFSQYSDEEVW-WALELAHLKTFVSALPDKLDHECAEGG 1419
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
NLS GQ+Q + LARA+ I + D+ +AVD T L + E TV+ + H
Sbjct: 1420 ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET-DNLIQSTIRTQFEDCTVLTIAH 1478
Query: 778 QVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812
++ + + R++VL+ G++ + G LL F
Sbjct: 1479 RLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIF 1513
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 2e-11
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 17/220 (7%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL------GEIPKISG----TVNLY---GS 659
L+ ++ ++ Q++ + G G+GKS+LL A+L GEI +I G +V L +
Sbjct: 1235 LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEI-QIDGVSWNSVTLQTWRKA 1293
Query: 660 IAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
+ Q +I SG+ R N+ Y + D+ + K + L I F + G
Sbjct: 1294 FGVIPQKVFIFSGTFRKNLDPYEQWSDEEIW-KVAEEVGLKSVIEQFPDKLDFVLVDGGY 1352
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LS G KQ + LAR++ + A I L D+P + +D T + + + + TVIL H+
Sbjct: 1353 VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII-RKTLKQSFSNCTVILSEHR 1411
Query: 779 VEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
VE L E + LV+EG + Q + Q+LL + F+Q ++A
Sbjct: 1412 VEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSA 1451
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 1221 LKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVD 1280
+ Y+ +L ++ G + + G+ G+GKTTL L L++ + GSIL++G
Sbjct: 5 ISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKP 63
Query: 1281 ICSMGLKDLRVKLSIIPQEPT--LFRGSVRTNLDPLGLYSDDEIWKALEK--CQLKT 1333
I + K+ R + + Q+ LF SVR L L E+ E+ LK
Sbjct: 64 IKA---KERRKSIGYVMQDVDYQLFTDSVREEL----LLGLKELDAGNEQAETVLKD 113
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 2e-11
Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 38/233 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
+R V+ ++ + + + G VGAG++ L A+ G P SG + L G
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 660 -IAYVS----QTSWIQSGSIRDNILYGKPMDKAR---YDKAIKACALDKDINNFD---HG 708
IAYV + SI +NI +R D+ + ++ I
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL- 767
IG LSGG +Q++ LAR + D + + D+P +D A ++ ++ L
Sbjct: 395 PEQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR--LIRELA 448
Query: 768 -EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
E K +++++ ++ L + DRILV+ G+I EL E ++ A
Sbjct: 449 AEGKAILMISSELPELLGLSDRILVMREGRIV-----GELDREEATEEAIMAA 496
|
Length = 500 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (162), Expect = 2e-11
Identities = 66/236 (27%), Positives = 108/236 (45%), Gaps = 28/236 (11%)
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI------------ 643
+I+ NF W L +NLDIK + A G G GKS+ L +
Sbjct: 82 EIRNFNF-WYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 644 LGEI---------PKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIK 694
GEI KIS ++ L I V Q SI DN+ YG P + D+ I
Sbjct: 141 EGEIYFLGTNTRSKKIS-SLELRTRIGMVFQKPTPFEMSIFDNVAYG-PRNNGINDRKIL 198
Query: 695 ACALDKDINNFDHGDLT--EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
++K + + D ++ + G LSGGQ+QR+ +ARA+ + ++ L D+P SA+D
Sbjct: 199 EKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDP 258
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLL 807
A + E ++ +K ++I+VTH + + D + G I ++G + + +
Sbjct: 259 IATAKI-EELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313
|
Length = 329 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 30/216 (13%)
Query: 607 ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------- 659
L L G++L+I + V GS GAGKS+LL AI G++ SG + + G
Sbjct: 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV 75
Query: 660 ------IAYVSQTSWIQSG---SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
+A V Q + +I +N+ + ++R K + AL++ + L
Sbjct: 76 AKRANLLARVFQDPLAGTAPELTIEENLA----LAESRGKKRGLSSALNERRRSSFRERL 131
Query: 711 TEIGQRGLN--------LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+G N LSGGQ+Q + L A + I L D+ +A+D TA +
Sbjct: 132 ARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELT 191
Query: 763 VMAALEKK-TVILVTHQVE-FLSEVDRILVLEGGQI 796
E K T ++VTH +E L +R+++L G+I
Sbjct: 192 AKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVI 773
G+ ++LSGGQ+QR+ +ARA+ + ++ LFD+P SA+D + A E KT++
Sbjct: 147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 206
Query: 774 LVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+VTH++ F V ++ L G+I + G ++L
Sbjct: 207 VVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
|
Length = 257 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 31/90 (34%), Positives = 55/90 (61%), Gaps = 5/90 (5%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTH 777
LSGGQ+QR+ +ARA+ + ++ LFD+P SA+D + VM L E +T+++VTH
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK--VMQDLAEEGRTMVVVTH 210
Query: 778 QVEFLSEV-DRILVLEGGQITQSGNYQELL 806
++ F +V ++ L G+I + G +++
Sbjct: 211 EMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240
|
Length = 256 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 3e-11
Identities = 68/257 (26%), Positives = 115/257 (44%), Gaps = 45/257 (17%)
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI--LGEIPK---I 650
KI GNF +A+ R ++ I+ + G G GKS++L ++ + ++ K
Sbjct: 15 KIFYGNF-----MAV---RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRF 66
Query: 651 SGTVNLYGS---------------IAYVSQTSWIQSGSIRDNILYGKPMDKARYD----- 690
G V+ G I V Q S SI DN+ +G +++ + D
Sbjct: 67 EGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRV 126
Query: 691 -KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
A++ AL ++ + ++ GL+LSGGQ+QR+ +ARA+ + ++ L D+P SA
Sbjct: 127 KHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSA 179
Query: 750 VDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808
+D AT E +M L+K T+ LVTH ++ V I+Q L+
Sbjct: 180 LDP--IATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237
Query: 809 GTAFEQLVNAHRDAITG 825
G Q+ R+ +T
Sbjct: 238 G-PTAQIFQNPREQLTS 253
|
Length = 261 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-11
Identities = 33/110 (30%), Positives = 61/110 (55%), Gaps = 18/110 (16%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA--- 1270
+E++ L + + +A +V + G++ +G +G+VG +GSGK+ L A+ L+
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
Query: 1271 --GGSILIDGVDICSMGLKDLRV----KLSIIPQEPTLFRGSVRTNLDPL 1314
GG IL DG D+ S+ K+LR ++++I Q+P T+L+P+
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP-------MTSLNPV 104
|
Length = 316 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 4e-11
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ L RY V+ G++ + +G VG++G G+GKTT + LV+P G IL
Sbjct: 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58
Query: 1276 IDGVDICSMGLKDLRVKLSII--PQEPTLFRG-SVRTNL 1311
+DG DI + + R +L I PQE ++FR +V N+
Sbjct: 59 LDGQDITKLPM-HKRARLGIGYLPQEASIFRKLTVEENI 96
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 4e-11
Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 39/183 (21%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQTSWIQ 670
L+ ++ +IK ++ + G G GKSSL A+ G P SG + + + ++ Q ++
Sbjct: 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP 76
Query: 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730
G++R+ ++Y P D LSGG++QR+
Sbjct: 77 LGTLREQLIY--PWDDV--------------------------------LSGGEQQRLAF 102
Query: 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILV 790
AR + + D+ SA+D + L+ + TVI V H+ DR+L
Sbjct: 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQ---LLKELGITVISVGHRPSLWKFHDRVLD 159
Query: 791 LEG 793
L+G
Sbjct: 160 LDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 4e-11
Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 38/195 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
++GV+L I A+ G G GKS+LL L E ++ G V L+G Y
Sbjct: 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVD 79
Query: 668 WIQSG----------------SIRDNILYGKPMDK---------ARYDKAIKACALDKDI 702
I+ +I DN+ G ++ R + A+K AL ++
Sbjct: 80 PIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV 139
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ + NLSGGQ+QR+ +ARA+ I L D+P + +D A + E
Sbjct: 140 KD-------RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKI-EEL 191
Query: 763 VMAALEKKTVILVTH 777
+ ++ T++LVTH
Sbjct: 192 LFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 33/220 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYV 663
L GV+LD++ + +A+ G GAGKS+LL A+ GE+ SG V L G +A
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76
Query: 664 -----SQTSWIQSGSIRDNILYGK-PMDKARY---DKAIKACALDKDINNFDHGDLTEIG 714
+S ++++ + G+ P R D+ I A AL DL+ +
Sbjct: 77 RAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAA-------TDLSGLA 129
Query: 715 QRGLN-LSGGQKQRIQLAR------AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
R LSGG++QR+QLAR D+P SA+D A
Sbjct: 130 GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR 189
Query: 768 EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806
E V+ V H + ++ DRI++L G++ SG+ Q++L
Sbjct: 190 EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 5e-11
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 41/205 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS----- 667
L ++L I Q +AV G G GKS+LL +L + S L G+ A +++
Sbjct: 28 LNQLDLHIPAGQFVAVVGRSGCGKSTLL-RLLAGLETPSAGELLAGT-APLAEAREDTRL 85
Query: 668 ---------WIQSGSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
W + DN+ L G+ D A +A+ A L N +
Sbjct: 86 MFQDARLLPW---KKVIDNVGLGLKGQWRDAAL--QALAAVGLADRANEWPAA------- 133
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TV 772
LSGGQKQR+ LARA+ + + L D+P A+DA T + + ++ +L ++ TV
Sbjct: 134 ----LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM--QDLIESLWQQHGFTV 187
Query: 773 ILVTHQV-EFLSEVDRILVLEGGQI 796
+LVTH V E ++ DR+L++E G+I
Sbjct: 188 LLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 5e-11
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 32/218 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
++ +L I+ + + G G+GKS+++ + I G V + G
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 659 ---SIAYVSQT-SWIQSGSIRDNILYGKPMD----KARYDKAIKACALDKDINNFDHGDL 710
IA V Q+ + + ++ DN +G + + R +KA+ A + N+ H
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALR-QVGLENYAHSYP 162
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEK 769
E LSGG +QR+ LARA+ + DI L D+ FSA+D + +E V + A +
Sbjct: 163 DE-------LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215
Query: 770 KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+T++ ++H ++ + DRI +++ G++ Q G E+L
Sbjct: 216 RTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 5e-11
Identities = 53/216 (24%), Positives = 97/216 (44%), Gaps = 30/216 (13%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658
+ GVN ++ + G GAGK++ + + + SGT + G
Sbjct: 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVR 65
Query: 659 -SIAYVSQTSWIQSG-SIRDNI-----LYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
SI V Q + + + R+N+ LYG P D+A +A L + +L
Sbjct: 66 RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEE----RAEELLELF------ELG 115
Query: 712 EIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
E R + SGG ++R+ +A ++ + D+ D+P + +D T +++ E
Sbjct: 116 EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV 175
Query: 771 TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
T++L TH +E ++ DRI +++ G+I G +EL
Sbjct: 176 TILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 5e-11
Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 55/251 (21%)
Query: 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
D +KI+ NF + L+ +N+D Q A+ G G GKS+LL A+ +S
Sbjct: 2 DPKIKIRGVNFFYHKH---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVS 58
Query: 652 GT--------------------VNLYGSIAYVSQTSWIQSGSIRDNILYGKPM----DKA 687
G VNL + V Q SI DN+ +G M ++
Sbjct: 59 GARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQS 118
Query: 688 RYD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743
R D K+++ AL ++ + H + GL LSGGQ+QR+ +AR + + ++ L
Sbjct: 119 RLDEVVEKSLRQAALWDEVKDNLH-------KSGLALSGGQQQRLCIARVLAIEPEVILM 171
Query: 744 DDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802
D+P SA+D +T+ E +M L++ T+ +VTH ++ Q ++ ++
Sbjct: 172 DEPCSALDP--VSTMRIEELMQELKQNYTIAIVTHNMQ--------------QAARASDW 215
Query: 803 QELLLAGTAFE 813
LL G E
Sbjct: 216 TGFLLTGDLVE 226
|
Length = 251 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 6e-11
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 19/143 (13%)
Query: 1198 PAIVEDKRPPSSWPFKGRIE----LRQLKIRYRP---------NAPLVLKGITCTFSEGT 1244
P + ++K R E +R L RY + ++ EG
Sbjct: 259 PRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGE 318
Query: 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG--VDICSMGLKDLRVKLSIIPQEPTL 1302
+G+VG +GSGK+TL L L+ P+ GSI+ DG +D+ L+ LR ++ ++ Q+P
Sbjct: 319 TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378
Query: 1303 F---RGSVRTNL-DPLGLYSDDE 1321
R +V L +PL ++
Sbjct: 379 SLNPRMTVGDILAEPLRIHGGGS 401
|
Length = 539 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 6e-11
Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 30/216 (13%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659
+ G++ + + + G GAGKS++ ILG +G + + G
Sbjct: 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARA 114
Query: 660 -IAYVSQTSWI-QSGSIRDNIL-YGKPMD-KARYDKAIKACALDKDINNFDHGDLTEIGQ 715
I V Q + ++R+N+L +G+ R +A+ L+ F + ++
Sbjct: 115 RIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLE-----FARLE-SKADA 168
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVIL 774
R +LSGG K+R+ LARA+ ND + + D+P + +D H A L E + + L + KT++L
Sbjct: 169 RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILL 227
Query: 775 VTHQVEFLSEV----DRILVLEGGQITQSGNYQELL 806
TH F+ E DR+ VLE G+ G L+
Sbjct: 228 TTH---FMEEAERLCDRLCVLEAGRKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 7e-11
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
V+ ++ + G VG++G G+GKTT + LV P G IL+D DI + + R
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPM-HKRA 77
Query: 1292 KLSI--IPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQL 1331
+L I +PQE ++FR +V N+ + + ++ KA K +L
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEEL 120
|
Length = 243 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 7e-11
Identities = 58/234 (24%), Positives = 107/234 (45%), Gaps = 36/234 (15%)
Query: 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSL---LYAIL--------- 644
I+ N S+ P L +NL IK + I + G G+GKS+L L +L
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61
Query: 645 -----GEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGK------PMD-KARYDKA 692
G+ K+ G L G + +T ++ ++ +++ +G P++ + R D+A
Sbjct: 62 SGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR-TVEEDLAFGPENLCLPPIEIRKRVDRA 120
Query: 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
+ L+K + H + LSGGQ Q + LA + + + +FD+ S +D
Sbjct: 121 LAEIGLEK----YRH-------RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDP 169
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ + + KT++ +TH +E L + DRI+V++ G+I G + +L
Sbjct: 170 DSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223
|
Length = 274 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 7e-11
Identities = 54/227 (23%), Positives = 104/227 (45%), Gaps = 48/227 (21%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
++K+ +F +D + L GV+++I ++ A+ G G GKS+ L L + ++
Sbjct: 7 AIKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKC-LNRMNELESE 62
Query: 654 VNLYGSIAYVSQTSW---------------------IQSGSIRDNILYGKPM----DKAR 688
V + G + + +Q + + S+ DN+ YG + K
Sbjct: 63 VRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLE 122
Query: 689 YD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
D A+K L +I + +I + L+LSGGQ+QR+ +ARA+ + L D
Sbjct: 123 IDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQQRLCIARALAVKPKVLLMD 175
Query: 745 DPFSAVDAHTAATLFNECVMAALEKK---TVILVTHQVEFLSEVDRI 788
+P +D A++ E ++ +L + T+++V+H L +V R+
Sbjct: 176 EPCFGLDP--IASMKVESLIQSLRLRSELTMVIVSHN---LHQVSRL 217
|
Length = 261 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 8e-11
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + RY V + ++G + ++G +GSGKTT + + RL+EP G I
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
IDG DI +LR K+ + Q+ LF
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLF 87
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 8e-11
Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 41/222 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
L +N +IAV G GAGKS+L G + SG+V + G
Sbjct: 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKF 79
Query: 660 IAYVSQTS--WIQSGSIRDNILYGKPMD--------KARYDKAIKACALDKDINNFDHGD 709
+ V Q I S ++ +I +G P++ R A+ L++ + H
Sbjct: 80 VGLVFQNPDDQIFSPTVEQDIAFG-PINLGLDEETVAHRVSSALHMLGLEELRDRVPH-- 136
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+LSGG+K+R+ +A + + + + D+P + +D L + + L +
Sbjct: 137 ---------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELID--FLNDLPE 185
Query: 770 K---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLL 807
TVI THQ++ + E+ D I V++ G+I G +E+ L
Sbjct: 186 TYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227
|
Length = 277 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 8e-11
Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 20/120 (16%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-----KTVIL 774
LSGGQ+QR+ +ARA+ N + L D+P A+D+H+ E VMA L + TVI+
Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG-----EEVMAILHQLRDRGHTVII 199
Query: 775 VTHQVEFLSEVDRILVLEGGQITQSGNYQE----------LLLAGTAFEQLVNAHRDAIT 824
VTH + ++ +R++ + G+I ++ QE ++ + + Q V+ R+A+T
Sbjct: 200 VTHDPQVAAQAERVIEIRDGEIVRNPPAQEKVNVAGGTEPVVNTASGWRQFVSGFREALT 259
|
Length = 648 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE++ L + VLKGI T +G V ++G +GSGK+TL+ + L EP G+I+
Sbjct: 1 IEIKNLHKSFGDFH--VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 1276 IDGVDICSMG--LKDLRVKLSIIPQEPTLF 1303
IDG+ + + +LR K+ ++ Q+ LF
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLF 88
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 1e-10
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+++R L Y+ + ++ +G G++G G+GKTT + L + P G+
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
I+G I + K R L PQ LF
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALF 87
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 1e-10
Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 60/237 (25%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--KISG--------TVNLYGSIAY 662
L V+L+I + +A+ G G+GKS+LL + G I K +G TV G +A
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 663 VSQTSWIQSG------------SIRDNILYG---------------KPMDKARYDKAIKA 695
+ S +G S+ +N+L G K R +A+
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTR 139
Query: 696 CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755
+ +F H QR LSGGQ+QR+ +ARA+ A + L D+P +++D +A
Sbjct: 140 VGM----VHFAH-------QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA 188
Query: 756 ATLFNECVMAAL------EKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQEL 805
VM L + TV++ HQV++ L +RI+ L G + G+ Q+
Sbjct: 189 -----RIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240
|
Length = 262 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 26/207 (12%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYGSIAYVSQTSWIQSG-S 673
+ LD + + + G GAGKSSLL + L E+P+ SGT+N+ G+ S+T ++
Sbjct: 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTPSDKAIRE 79
Query: 674 IRDNI------------------LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
+R N+ L P K AL + + L
Sbjct: 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQ---ALARAEKLLERLRLKPYAD 136
Query: 716 R-GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL 774
R L+LSGGQ+QR+ +ARA+ + + LFD+P +A+D A + + A T ++
Sbjct: 137 RFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVI 196
Query: 775 VTHQVEFLSEV-DRILVLEGGQITQSG 800
VTH+VE + R++ +E G I + G
Sbjct: 197 VTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 1e-10
Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 43/222 (19%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
++K+++ +F ++ AI G+++DI + A+ G G GKS+ + L I ++ G
Sbjct: 7 AIKVKDLSFYYNTSKAI---EGISMDIYRNKVTAIIGPSGCGKSTFI-KTLNRISELEGP 62
Query: 654 VNLYGSIAYVSQTSW----------IQSG-----------SIRDNILYG----KPMDKAR 688
V + G + + Q + Q G SI +N+ YG + +A
Sbjct: 63 VKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQAD 122
Query: 689 YDK----AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
D+ A+K AL +++ + ++ + L LSGGQ+QR+ +ARA+ + L D
Sbjct: 123 LDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQQRLCIARALAIKPKVLLMD 175
Query: 745 DPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSEV 785
+P SA+D AT+ E ++ +L + T+ +VTH ++ + V
Sbjct: 176 EPCSALDP--IATMKVEELIHSLRSELTIAIVTHNMQQATRV 215
|
Length = 259 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 45/214 (21%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L +NL+I + + + G G+GK++LL I G G++ + G
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80
Query: 659 --SIAYVSQ-----TSWIQSGSIR------DNILYGKPMDKARYDKAIKACALDKDINNF 705
+I Y+ Q +++ N+ Y + ++AR ++A L ++ +
Sbjct: 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERAR--AMLEAVGLGDHLDYY 138
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA---ATLFNEC 762
H NLSGGQKQR+ +ARA+ + + L D+P +A+D+ + L +
Sbjct: 139 PH-----------NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQK- 186
Query: 763 VMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796
+A + T+++VTH L DRI+ +E G++
Sbjct: 187 -LAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 74/212 (34%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTV----------NLYGSI 660
L+ V+ K + A+ G GAGKS+LL A+ G +SG V + I
Sbjct: 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKII 84
Query: 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT--------- 711
YV Q D+IL H LT
Sbjct: 85 GYVPQ----------DDIL---------------------------HPTLTVRETLMFAA 107
Query: 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-- 769
++ RGL SGG+++R+ +A + ++ + D+P S +D+ +A VM+ L +
Sbjct: 108 KL--RGL--SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ-----VMSLLRRLA 158
Query: 770 ---KTVILVTHQV--EFLSEVDRILVLEGGQI 796
+T+I HQ E D++L+L G++
Sbjct: 159 DTGRTIICSIHQPSSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 1e-10
Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 40/223 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659
L V+L ++ + +A+ G GAGKS+LL A+ GE+ SG V L G
Sbjct: 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARR 77
Query: 660 IAYVSQTSWIQ-SGSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
A + Q S + ++ + + + +A D A+ A AL + DL +
Sbjct: 78 RAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAE-DDALVAAALAQ-------VDLAHLAG 129
Query: 716 RG-LNLSGGQKQRIQLARA---VYNDADI--YLF-DDPFSAVD-AH---TAATLFNECVM 764
R LSGG++QR+QLAR ++ +L D+P SA+D AH
Sbjct: 130 RDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE 189
Query: 765 AALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806
L VI+V H + + DRI++L G++ G E+L
Sbjct: 190 RGL---AVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 1e-10
Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 39/225 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAY----- 662
L+ VNLDI A+ G G GKS+ + + L + G + L G Y
Sbjct: 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78
Query: 663 ----------VSQTSWIQSGSIRDNILYG------KPMDK--ARYDKAIKACALDKDINN 704
V Q SI DN+ YG D R ++++KA AL ++ +
Sbjct: 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD 138
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
++ + L LSGGQ+QR+ +AR + ++ L D+P SA+D +T E ++
Sbjct: 139 -------KLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDP--ISTTKIEDLI 189
Query: 765 AALEKK-TVILVTHQVEFLSEVDRIL-VLEGGQITQSGNYQELLL 807
L++ T+++VTH ++ + V + G+I +SG ++ +
Sbjct: 190 HKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFI 234
|
Length = 250 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 21/206 (10%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---------IAYV 663
+ ++ ++ + + G GAGK++ ILG + G + G I Y+
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYL 77
Query: 664 -SQTSWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
+ ++ D + Y K M KA K ++A +I + E
Sbjct: 78 PEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKE------- 130
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779
LS G +Q+IQ AV ++ ++ + D+PFS +D L + E T+I +H++
Sbjct: 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM 190
Query: 780 EFLSEV-DRILVLEGGQITQSGNYQE 804
E + E+ DR+L+L+ GQ G ++
Sbjct: 191 EHVEELCDRLLMLKKGQTVLYGTVED 216
|
Length = 300 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 65/225 (28%), Positives = 99/225 (44%), Gaps = 54/225 (24%)
Query: 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-- 643
ISLQ +V I G F ++ V DI + A+ G G GKS++L ++
Sbjct: 14 ISLQ----NVTISYGTFE--------AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNR 61
Query: 644 ---LGEIPKISGTV-----NLYGS----------IAYVSQTSWIQSGSIRDNILYGK--- 682
L E + G V +LY I V Q SI +NI +G
Sbjct: 62 MNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARIN 121
Query: 683 ----PMDKARYDKAIKACALD--KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736
MD+ KA D KD ++ + G +LSGGQ+QR+ +AR +
Sbjct: 122 GYTGDMDELVERSLRKAAVWDECKD----------KLNESGYSLSGGQQQRLCIARTIAI 171
Query: 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVE 780
+ ++ L D+P SA+D +TL E M L+K T+++VTH ++
Sbjct: 172 EPEVILMDEPCSALDP--ISTLKIEETMHELKKNFTIVIVTHNMQ 214
|
Length = 269 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
+EL+ ++ + + VLK + +G V ++G +G GK+TL+ + L EP G I
Sbjct: 3 ELELKNVRKSF--GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTNLD-PLGLY--SDDEI-WK---AL 1326
LIDG D+ + + R ++++ Q L+ +V N+ L L EI +
Sbjct: 61 LIDGRDVTDLPPEK-R-GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 1327 EKCQLKTTISSLPNKLDSSG 1346
+ L+ ++ P +L SG
Sbjct: 119 KLLGLEHLLNRKPLQL--SG 136
|
Length = 338 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM---AALEKKTVILVT 776
LSGGQ+QR+ +ARA+ + LFD+ SA+D + N V+ A+ T++LVT
Sbjct: 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN--VIRRLASEHDLTMLLVT 204
Query: 777 HQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
H++ F E DR+ + G+I + G E+
Sbjct: 205 HEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 54/218 (24%), Positives = 90/218 (41%), Gaps = 50/218 (22%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658
LR V+ I + + + G GAGKS+LL I GE G + + G
Sbjct: 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75
Query: 659 ----SIAYVSQT-SWIQSGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDHG 708
I V Q + ++ +N+ GKP + R + LD
Sbjct: 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE---VLD--------- 123
Query: 709 DLTEIGQRGLN----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
L + + LSGG++QR+ +ARA+ N + L D+P +D + +M
Sbjct: 124 -LVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS-----WEIM 177
Query: 765 AALEK-----KTVILVTHQVEFLSEVD-RILVLEGGQI 796
E+ TV++ TH +E ++ + R+L LE G++
Sbjct: 178 RLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 47/244 (19%)
Query: 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI--LGEI--- 647
R +K+ G + L GVNL+I A+ G G+GKS+LL L E+
Sbjct: 7 RDLKVSFGQ--------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPE 58
Query: 648 PKISGTVNLYGS-------------IAYVSQT-SWIQSGSIRDNILYGKPMDK------- 686
++SG V L G + V Q + I + SI +N+ G +++
Sbjct: 59 ARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKE 118
Query: 687 --ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
R A++ L ++ + + LSGGQ+QR+ +ARA+ ++ L D
Sbjct: 119 LQERVRWALEKAQLWDEVKD-------RLDAPAGKLSGGQQQRLCIARALAFQPEVLLAD 171
Query: 745 DPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNY 802
+P + +D A + E + L+K T++LVTH + + + D + L GQI + G
Sbjct: 172 EPTANLDPENTAKI--ESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPT 229
Query: 803 QELL 806
+E+
Sbjct: 230 REVF 233
|
Length = 250 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 39/187 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAY 662
G++ + + + + G G+GK++LL I G +P +GT+ L G + Y
Sbjct: 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHY 77
Query: 663 VSQTSWIQSG-----SIRDNI-----LYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+ ++ ++ +N+ G ++ A++A L L
Sbjct: 78 LGH----RNAMKPALTVAENLEFWAAFLGG--EELDIAAALEAVGL---------APLAH 122
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-T 771
+ LS GQK+R+ LAR + ++ I++ D+P +A+DA A LF E + A L +
Sbjct: 123 L--PFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVA-LFAELIRAHLAQGGI 179
Query: 772 VILVTHQ 778
VI TH
Sbjct: 180 VIAATHI 186
|
Length = 207 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-10
Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 44/216 (20%)
Query: 616 VNLDIKWAQKI-AVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------------- 659
VNL + AQ I A+ G GAGK+SL+ AI G G + L G
Sbjct: 17 VNLTLP-AQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75
Query: 660 --IAYVSQTSWI-QSGSIRDNILYG-KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
I YV Q + + +R N+ YG A++DK + ++ ++ +
Sbjct: 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPG-------- 127
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-----K 770
+LSGG+KQR+ + RA+ ++ L D+P +++D L + LE+
Sbjct: 128 ---SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREL-----LPYLERLAREIN 179
Query: 771 TVIL-VTHQV-EFLSEVDRILVLEGGQITQSGNYQE 804
IL V+H + E L DR++VLE G++ G +E
Sbjct: 180 IPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE 215
|
Length = 352 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 55/202 (27%), Positives = 89/202 (44%), Gaps = 36/202 (17%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYA------------ILGEI----PKISGT-- 653
L + + I + A+ G G GKS+LL I G+I I +
Sbjct: 21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80
Query: 654 --VNLYGSIAYVSQTSWIQSGSIRDNILYGKPM----DKARYD----KAIKACALDKDIN 703
V L I V Q SI +N+ YG + +K D K++K AL ++
Sbjct: 81 DVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK 140
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ H L+LSGGQ+QR+ +AR + + ++ L D+P SA+D A + +
Sbjct: 141 DRLH-------DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP-IATAKIEDLI 192
Query: 764 MAALEKKTVILVTHQVEFLSEV 785
++ TVI+VTH ++ + V
Sbjct: 193 EDLKKEYTVIIVTHNMQQAARV 214
|
Length = 253 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 32/194 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS- 671
L+ +NLDI + A+ G G GKS+ + L + ++ +V G I Y Q + +S
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKT-LNRMVELVPSVKTTGKILYRDQNIFDKSY 98
Query: 672 --------------------GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
SI DN+ YG P DK ++K + D
Sbjct: 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYG-PKIHGIKDKKTLDEIVEKSLRGAAIWD-- 155
Query: 712 EIGQR----GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
E+ R LSGGQ+QR+ +AR + + D+ L D+P SA+D +TL E ++ L
Sbjct: 156 ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDP--ISTLKVEELVQEL 213
Query: 768 EKK-TVILVTHQVE 780
+K ++I+VTH ++
Sbjct: 214 KKDYSIIIVTHNMQ 227
|
Length = 271 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 45/222 (20%)
Query: 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-----------IAYVSQ 665
+L ++ +++A+ G GAGKS+LL I G + SG++ L G ++ + Q
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 666 TSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR-GLN---- 719
+ + S ++ NI G + +K +N L I ++ G+
Sbjct: 79 ENNLFSHLTVAQNIGLG-------LNPGLK-------LNAAQREKLHAIARQMGIEDLLA 124
Query: 720 -----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA---HTAATLFNE-CVMAALEKK 770
LSGGQ+QR+ LAR + + I L D+PFSA+D TL ++ C L
Sbjct: 125 RLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQL--- 181
Query: 771 TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTA 811
T+++V+H +E + + R LV+ G+I G E LL+G A
Sbjct: 182 TLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDE-LLSGKA 222
|
Length = 232 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 1229 APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD 1288
LK I +G V +VG GSGK++L+SAL +E GS+ + G
Sbjct: 17 TSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---------- 66
Query: 1289 LRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIW--KALEKCQLKTTISSLPN 1340
++ + QEP + G++R N+ L DE K ++ C L+ + LP+
Sbjct: 67 ---SIAYVSQEPWIQNGTIRENI--LFGKPFDEERYEKVIKACALEPDLEILPD 115
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 4e-10
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + RY + + T EG + ++G +GSGKTT + + RL+EP G IL
Sbjct: 2 IEFENVSKRY--GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
IDG DI + +LR K+ + Q+ LF
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLF 87
|
Length = 309 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 4e-10
Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 37/194 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
L V+LDI A G G GKS+ L + + +++G + L G Y +
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 668 WIQ---------------SGSIRDNILYGKPM-----DKARYD----KAIKACALDKDIN 703
++ SI +N+ YG + KA D +++ L +++
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ + + G LSGGQ+QR+ +ARA+ ++ L D+P SA+D A + E +
Sbjct: 155 D-------RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV-EELI 206
Query: 764 MAALEKKTVILVTH 777
+ T+++VTH
Sbjct: 207 DELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 5e-10
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 19/143 (13%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
+E+ + + VL+ I + +G V ++G +G GK+TL+ + L +P G
Sbjct: 1 MALLEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG 58
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLF--RGSVRTN----LDPLGLYSDDEIWKA- 1325
+L+DG + + + QE L +V N L+ G + +A
Sbjct: 59 EVLLDG-----RPVTGPGPDIGYVFQEDALLPWL-TVLDNVALGLELRGKSKAEARERAK 112
Query: 1326 --LEKCQLKTTISSLPNKLDSSG 1346
LE L P++L SG
Sbjct: 113 ELLELVGLAGFEDKYPHQL--SG 133
|
Length = 248 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-10
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
++L L RY L G++ T G G++G G+GKTTL+ L L P+ G+I
Sbjct: 1 LQLENLTKRYGKK--RALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
IDG D+ K LR ++ +PQE ++
Sbjct: 58 IDGQDVLKQPQK-LRRRIGYLPQEFGVY 84
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 5e-10
Identities = 58/221 (26%), Positives = 104/221 (47%), Gaps = 41/221 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ-- 670
L+G++L I K A+ G GAGKS+LL + G G V + G W++
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
Query: 671 -------------SGSIRDNILYGKPMD--------KARYDKAIKACALDKDINNFDHGD 709
S ++ D++ +G P++ + R ++A+KA + +F
Sbjct: 81 VGLVFQDPDDQVFSSTVWDDVAFG-PVNMGLDKDEVERRVEEALKAV----RMWDFRD-- 133
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+ +LS GQK+R+ +A + D D+ + D+P + +D TL ++ L
Sbjct: 134 -----KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLME--ILDRLHN 186
Query: 770 --KTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807
KTVI+ TH V+ +E D+++VL+ G++ G+ + LL
Sbjct: 187 QGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGD-KSLLT 226
|
Length = 274 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 6e-10
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + Y PN L GI + S G V +VG +G+GK+TL+ +++ P G+I
Sbjct: 1 IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 1276 IDGVDICSMGLKD-----LRVKLSIIPQE 1299
++G D+ L+ LR K+ ++ Q+
Sbjct: 60 VNGQDVS--DLRGRAIPYLRRKIGVVFQD 86
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 6e-10
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
IEL+ + + + L ++ G GV+G +G+GK+TLI + L P G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1274 ILIDGVDICSMGLKDLR 1290
+L+DG D+ ++ K+LR
Sbjct: 62 VLVDGQDLTALSEKELR 78
|
Length = 343 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 7e-10
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 11/102 (10%)
Query: 1216 IELRQLKIRYRPNAP---LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I ++++ RY+ P L + + G+ V ++G TGSGK+TL+ L L++P G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 1273 SILIDGVDICSMG-----LKDLRVKLSIIPQ--EPTLFRGSV 1307
++ I G + + G LK LR K+ I+ Q E LF +V
Sbjct: 63 TVTI-GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETV 103
|
Length = 290 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 7e-10
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 42/196 (21%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLL------YAILGEIPKISGTVNLYGS------- 659
L+ +NLDI Q A G G GKS+LL Y + E + G + L G
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQ-RAEGEILLDGENILTPKQ 87
Query: 660 --------IAYVSQTSWIQSGSIRDNILYG---------KPMDKARYDKAIKACALDKDI 702
+ V Q SI DNI +G MD+ R + A+ AL ++
Sbjct: 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDE-RVEWALTKAALWNEV 146
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ ++ Q G +LSGGQ+QR+ +AR + ++ L D+P SA+D + + E
Sbjct: 147 KD-------KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRI--EE 197
Query: 763 VMAAL-EKKTVILVTH 777
++ L + TV++VTH
Sbjct: 198 LITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 8e-10
Identities = 79/350 (22%), Positives = 135/350 (38%), Gaps = 37/350 (10%)
Query: 1007 FDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRIN 1066
FD P+ +++ L IGI+ VLV A++ R ++ + A E I
Sbjct: 124 FDAPWMPIYLLVCFL-LHPWIGILALGGAVVLVG--LALLNNRATKKP-LKEATEA-SIR 178
Query: 1067 GTTKAPVMNYTAETSQGVVTIRAF-NMVDRFFQNYLKLVDIDASLFFHTNGVMEWL--IL 1123
A AE + + + RF YL S G++ L
Sbjct: 179 ANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSA----QSAASDRAGMLSNLSKYF 234
Query: 1124 RVEALQNLTLFTAALFLVLIPRGYVAPG-------LVGLSLSYAFTLTGTQVFLSRWYCY 1176
R+ LQ+L L A L G + PG LVG +L+ G W +
Sbjct: 235 RI-VLQSLVLGLGA---YLAIDGEITPGMMIAGSILVGRALAPIDGAIGG------WKQF 284
Query: 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGI 1236
+ +R+ + + P + P +G + + + I L+GI
Sbjct: 285 SGA-RQAYKRLNELLANYPSRDPAMPLPEP------EGHLSVENVTIVPPGGKKPTLRGI 337
Query: 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
+ + G + ++G +GSGK+TL + + P GS+ +DG D+ + + +
Sbjct: 338 SFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYL 397
Query: 1297 PQEPTLFRGSVRTNLDPLGLYSDDE-IWKALEKCQLKTTISSLPNKLDSS 1345
PQ+ LF G+V N+ G +D E I +A + + I LP+ D+
Sbjct: 398 PQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTV 447
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 9e-10
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
+E+R + Y A L+ I+ + EG V +VG +G GK+TL+ + L P G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
+L+DG + + Q+ L
Sbjct: 61 VLVDGEPVT-----GPGPDRGYVFQQDALL 85
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 9e-10
Identities = 57/213 (26%), Positives = 91/213 (42%), Gaps = 38/213 (17%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658
L G+N+ I + + + G GAGKS+LL I E SGT+ + G
Sbjct: 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAI 73
Query: 659 -----SIAYVSQTS-WIQSGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDH 707
I V Q + ++ +N+ + G P + R K + A AL+ + H
Sbjct: 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIR--KRVPA-ALELVGLSHKH 130
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA---ATLFNECVM 764
L LSGG++QR+ +ARA+ N I + D+P +D T L +
Sbjct: 131 RALPA------ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK 184
Query: 765 AALEKKTVILVTHQVEFLSEVD-RILVLEGGQI 796
A TV++ TH E + R++ LE G++
Sbjct: 185 AGT---TVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 9e-10
Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 41/209 (19%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVN 655
+F + A L ++L+ + Q A+ G G GKS+ L + L ++ G +
Sbjct: 13 SFFYGDFQA---LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL 69
Query: 656 LYGSIAY---------------VSQTSWIQSGSIRDNILYGKPM----DKA----RYDKA 692
L G Y V Q SI +N+ YG + DKA R +++
Sbjct: 70 LDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERS 129
Query: 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
++ AL ++ + + + L LSGGQ+QR+ +ARA+ + ++ L D+P SA+D
Sbjct: 130 LRHAALWDEVKD-------RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182
Query: 753 HTAATLFNECVMAALEKK-TVILVTHQVE 780
AT E ++ L+ + T+I+VTH ++
Sbjct: 183 --IATQKIEELIHELKARYTIIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 9e-10
Identities = 57/229 (24%), Positives = 96/229 (41%), Gaps = 40/229 (17%)
Query: 600 GNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658
G+FS D + + A+ G G+GK++L+ I G G + L G
Sbjct: 10 GDFSLD----------ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGR 59
Query: 659 ----------------SIAYVSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
I YV Q S+R N+ YG M +AR + + +
Sbjct: 60 TLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYG--MKRARPSERRISFERVIE 117
Query: 702 INNFDHGDLTEIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL-- 758
+ H + R LSGG+KQR+ + RA+ + + L D+P +A+D +
Sbjct: 118 LLGIGH-----LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILP 172
Query: 759 FNECVMAALEKKTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
+ E + A ++ V+H + E L DR++VLE G++ +G E+
Sbjct: 173 YLERLHAEF-GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I + + +VL ++ +G ++G G+GK+TL+S + RL++ G I
Sbjct: 2 ITIEN--VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQE 1299
IDG+++ S K+L KLSI+ QE
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQE 83
|
Length = 252 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+++ +L Y + LKGI +G ++G G+GK+TL L +++P+ G IL
Sbjct: 6 LKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 1276 IDG--VDICSMGLKDLRVKLSIIPQEP--TLFRGSVRTNLD--PLGL-YSDDEIWKALEK 1328
DG +D GL LR + ++ Q+P LF SV ++ + L +DE+ K ++
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDN 124
Query: 1329 CQLKTTISSLPNK 1341
+T I L +K
Sbjct: 125 ALKRTGIEHLKDK 137
|
Length = 283 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 31/222 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
+ V+L+++ + + + G GAGK++L I G SGTV G
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 660 -IAYVSQTSWIQSG-SIRDNIL--------YGKPMDKARYDKAIKACALDKDINNFDHGD 709
IA Q + + G ++ +N+ + + R K + A ++ +
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEERE-ARERARELLEFVG 138
Query: 710 LTE-IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF---SAVDAHTAATLFNECVMA 765
L E + NLS GQ++R+++ARA+ + L D+P + + A L E +
Sbjct: 139 LGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRE--LR 196
Query: 766 ALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T++L+ H ++ + + DRI+VL G++ G +E+
Sbjct: 197 DRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238
|
Length = 250 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 38/194 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISG------------TVN 655
++G+++ + + A+ G G+GKS+ L ++ +I +++G +N
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 656 LY---GSIAYVSQTSWIQSGSIRDNILYGKPM----DKARYDK----AIKACALDKDINN 704
+Y I V Q + SI +NI + DK D+ ++K AL + +
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD 155
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
++ + L LSGGQ+QR+ +ARA+ DI L D+P SA+D + L E M
Sbjct: 156 -------DLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQL--EETM 206
Query: 765 AALEKK-TVILVTH 777
L+K T+I+VTH
Sbjct: 207 FELKKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 1e-09
Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 39/224 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL---GEIP--KISGTVNLYGSIAY----- 662
++ V + I Q A+ G G GK++LL +I IP ++ G + G Y
Sbjct: 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLD 78
Query: 663 ----------VSQTSWIQSGSIRDNILYGKPM----DKARYD----KAIKACALDKDINN 704
V Q SI DN+ +G + K + D +++K AL ++ +
Sbjct: 79 VTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS 138
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
E+ + G LSGGQ+QR+ +ARA+ + ++ L D+P SA+D AT E ++
Sbjct: 139 -------ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP--IATQRIEKLL 189
Query: 765 AAL-EKKTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
L E T+++VTH + + + D I + G++ + G +E++
Sbjct: 190 EELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233
|
Length = 250 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 29/218 (13%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659
+ GV++ + G G+GKS+LL + G + +GTV+L G
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 660 --IAYVSQTSWIQSG-SIRDNILYGK-------PMDKARYDKAIKACALDKDINNFDHGD 709
+A V Q S ++RD + G+ D + ++++ D
Sbjct: 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD 134
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
++ LSGG++QR+ +ARA+ + + L D+P + +D A
Sbjct: 135 MS-------TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATG 187
Query: 770 KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
TV+ H + + D ++VL+GG++ +G +E+L
Sbjct: 188 VTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 1216 IELRQLKIRYR--PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
IEL+ + Y LK + G V +VG +GSGK+TL++ L L +P G
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 1274 ILIDGVDICSMGLKDL----RVKLSIIPQ 1298
+LI+G D+ + K+L R K+ + Q
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQ 90
|
Length = 226 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 2e-09
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 16/91 (17%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD-AHTAATLFNECVMAALEKK------- 770
LSGGQKQR+ +ARA+ ++ + L D+ SA+D A T + L L K
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL-------ELLKDINRELGL 192
Query: 771 TVILVTHQVEFLSEV-DRILVLEGGQITQSG 800
T++L+TH+++ + + DR+ V++ G++ + G
Sbjct: 193 TIVLITHEMDVVKRICDRVAVIDAGRLVEQG 223
|
Length = 343 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 2e-09
Identities = 73/398 (18%), Positives = 128/398 (32%), Gaps = 63/398 (15%)
Query: 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSS 1000
+ G+ + +F F A+ G+ I AP+ D ++ L+
Sbjct: 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTH 118
Query: 1001 DLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMV-------------- 1046
D+ ++ F +A + I + +++ + + I A++
Sbjct: 119 DIDQIN-AFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGF 177
Query: 1047 ----AVR----FVQRYYIATAREL--IRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096
A R + A A ++I+G + + + I ++++
Sbjct: 178 KFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRR--LSFAHGAIQESANNIADLHIIEI- 234
Query: 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLS 1156
+ L F L LF AA+F + A L L
Sbjct: 235 --LIFIAAENFGQLLFFL-------------LIGCALFAAAMFASIDAAAISAFVLALL- 278
Query: 1157 LSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI--PPEPPAIVEDKR------PPS 1208
+ G L LA I+ +R+ F PEP + D
Sbjct: 279 -----YIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDK 333
Query: 1209 SWPFKGRIELRQLKIRYRP---NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFR 1265
S IEL+ + + + + L I ++G V +VG G GK+TL
Sbjct: 334 SV---DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG 390
Query: 1266 LVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
L P G IL+DG + + D R S I + LF
Sbjct: 391 LYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLF 428
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 2e-09
Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 28/217 (12%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
L V+ ++ + + G GAGK++L I G + SG+V G
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 660 -IAYVSQTSWI-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
I Q + ++ +N++ +A +++ L +G
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD 135
Query: 718 L------NLSGGQKQRIQLARAVYNDADIYLFDDPF---SAVDAHTAATLFNECVMAALE 768
L LS GQ++R+++ARA+ D + L D+P + + A L E
Sbjct: 136 LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE---LRER 192
Query: 769 KKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQE 804
TV+LV H ++ + + DR+ VL+ G++ G E
Sbjct: 193 GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 44/240 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
++ VNLD++ A+ G G GK++ L AI L +++G + L G Y +
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 668 WIQSGSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGL------ 718
+ + R +++ KP + +D + L I + DH L E+ +R L
Sbjct: 80 PV-AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKL-AGIRDRDH--LMEVAERSLRGAALW 135
Query: 719 ------------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
LSGGQ+QR+ +ARA+ + +I L D+P SA+D + A + E +M
Sbjct: 136 DEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI--EDLMTD 193
Query: 767 LEK-KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAIT 824
L+K T+I+VTH + + V D G + + G +QL RD T
Sbjct: 194 LKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHG----------PTDQLFTNPRDERT 243
|
Length = 252 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 2e-09
Identities = 65/237 (27%), Positives = 106/237 (44%), Gaps = 31/237 (13%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLL--YAILGE-IP--KISGTVNLYGSIAYVSQTSWI- 669
V+L I + IA G G GKS+LL + + + IP K+ G + Y SQ + +
Sbjct: 39 VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVK 98
Query: 670 ---QSG-----------SIRDNILYGKPMD--KARYDKAIKACALDKDINNFDHGDLTEI 713
Q G SI +NI + + K D+ ++ I L E
Sbjct: 99 LRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKE- 157
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVI 773
+G LSGGQ+QR+ +ARA+ D+ L D+P SA+D + + E + E+ T+I
Sbjct: 158 --KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQV-EELCLELKEQYTII 214
Query: 774 LVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA-----HRDAITG 825
+VTH ++ S V +I + G + L+ + EQ+ + R+ I+G
Sbjct: 215 MVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEAREYISG 271
|
Length = 274 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 47/221 (21%)
Query: 607 ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658
E + L GV L +K + IA+ G G+GKS+LL + G SG V+L G
Sbjct: 20 EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDE 79
Query: 659 ---------SIAYVSQT-SWIQSGSIRDNI-----LYGKPMDKARYDKAIKACALDKDIN 703
+ +V Q+ I + + +N+ L G+ ++R A AL + +
Sbjct: 80 EARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNG----AKALLEQLG 135
Query: 704 NFDHGDLTEIGQR----GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT----A 755
+G+R LSGG++QR+ LARA D+ D+P +D T A
Sbjct: 136 ---------LGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIA 186
Query: 756 ATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796
LF+ + T+ILVTH ++ + DR L L GQ+
Sbjct: 187 DLLFS---LNREHGTTLILVTHDLQLAARCDRRLRLVNGQL 224
|
Length = 228 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-09
Identities = 55/231 (23%), Positives = 114/231 (49%), Gaps = 35/231 (15%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT-- 666
+ ++G++ DI+ + +A+ G G+GKS +ILG +P + GSI + +
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS-PAAAHPSGSILFDGEDLL 80
Query: 667 --SWIQSGSIRDN---ILYGKPM--------------DKARYDKAI-KACALDKDINNFD 706
S Q +R N +++ +PM + R + + +A A + + +
Sbjct: 81 AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLE 140
Query: 707 HGDLTEIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ E +R L+ LSGGQ+QR+ +A A+ N+ D+ + D+P +A+D A + +
Sbjct: 141 LVGIPEPEKR-LDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD- 198
Query: 762 CVMAALEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLA 808
++ L+ + ++ +TH + + + DR+ V++ G+I ++G + L A
Sbjct: 199 -LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAA 248
|
Length = 534 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 56/235 (23%), Positives = 112/235 (47%), Gaps = 38/235 (16%)
Query: 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ 665
P+ A L+ V+ + + +A+ G G+GKS+L + G + +GT+ + G + +
Sbjct: 16 PDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGG-MVLSEE 74
Query: 666 TSW---------IQS-------GSIRDNILY-----GKPMDK--ARYDKAIKACALDKDI 702
T W Q+ +++D++ + G P ++ R D+A++ ++ +
Sbjct: 75 TVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFL 134
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
N H LSGGQKQR+ +A + DI + D+ S +D + E
Sbjct: 135 NREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVL-ET 182
Query: 763 VMAALEKK--TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
V E+K TV+ +TH ++ ++ DR++V+ G+I + G +E+ +G +++
Sbjct: 183 VRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGHMLQEI 237
|
Length = 279 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 1216 IELRQLKIRYRPNAP--LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
IEL+ L Y LKG++ + +G V +VG +GSGK+TL++ L L P G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 1274 ILIDGVDICSMGLKDL----RVKLSIIPQEPTL 1302
+ +DG DI + K+L R + + Q L
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-09
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 1257 TTLISALFRLVEPAGGSILIDGVDICSMG-LKDLRVKLSIIPQEPTLF-RGSVRTNLDPL 1314
+TL+ + L++P G+IL+DG D + K LR ++ ++ Q+P LF +VR NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1315 GL--YSDDEIWKALEKCQLKTTISSLPNKLDSSG 1346
+D +ALE+ L + P S G
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVGTLSGG 94
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+EL+Q+ Y +L I+ + G + + G +G GK+TL+ + L+ P G++L
Sbjct: 4 LELKQV--GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
+G D+ ++ + R ++S Q P LF +V NL
Sbjct: 62 FEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNL 97
|
Length = 223 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
VL G+ + EG+ VG+VG G+GKTTL+ A+ + P G++L+ G D+ ++ +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 1292 KLSIIPQEPTL-FRGSVRT 1309
+++ +PQ+ +L F VR
Sbjct: 78 RVASVPQDTSLSFEFDVRQ 96
|
Length = 402 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 42/221 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAY-------VS 664
L+G+N + + +A+ G GAGKS+L G + SG V + G I Y V
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR 77
Query: 665 QTSWIQ---------SGSIRDNILYGKPMD--------KARYDKAIKACALDKDINNFDH 707
+T I + ++ +++ +G P++ + R +A+KA ++ N H
Sbjct: 78 KTVGIVFQNPDDQLFAPTVEEDVAFG-PLNLGLSKEEVEKRVKEALKAVGMEGFENKPPH 136
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
+LSGGQK+R+ +A + +I + D+P S +D A+ + ++ L
Sbjct: 137 -----------HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMK--LLYDL 183
Query: 768 EKK--TVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805
K+ T+I+ TH V+ + D++ V+ G+I + G +E+
Sbjct: 184 NKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-09
Identities = 43/227 (18%), Positives = 95/227 (41%), Gaps = 59/227 (25%)
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------- 659
R ++ + + + G VG+G++ L+ + G + G + L G
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 660 IAYVSQ----TSWIQSGSIRDNI-------------LYG--------KPMDKARYDKAIK 694
+AY+++ + + SI N+ G + + R A+K
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 695 ACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754
+++++I LSGG +Q++ +++ + ++ +FD+P +D
Sbjct: 400 CHSVNQNITE---------------LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA 444
Query: 755 AATLFNECVMAAL--EKKTVILVTHQV-EFLSEVDRILVLEGGQITQ 798
A ++ VM L + K +++V+ ++ E ++ DRI V G++TQ
Sbjct: 445 KAEIYK--VMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-09
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG---TVNLYGSIAYVSQTSWIQSGS 673
+ ++ + +CG G GKSSL + ILGE+ + G T G + YV Q ++ G+
Sbjct: 472 SFEVPSGNNLLICGPNGCGKSSL-FRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGT 530
Query: 674 IRDNILYGKPMDKARY-DKAIKACALDKDINNF-DHGDLTEIGQRGLN----------LS 721
+RD I+Y P + + DKD+ D+ LT I +R LS
Sbjct: 531 LRDQIIY--PDSSEDMKRRGLS----DKDLEQILDNVQLTHILEREGGWSAVQDWMDVLS 584
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
GG+KQRI +AR Y+ + D+ SAV ++ C + T+ V+H+
Sbjct: 585 GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGI---TLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 49/198 (24%), Positives = 90/198 (45%), Gaps = 15/198 (7%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L ++L +K + G GAGK++ + ILG I SG + G + + + G
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIG 75
Query: 673 SIRDN-ILYGKPMDKARYDKAIKACAL---DKDINN-FDHGDLTEIGQRGL-NLSGGQKQ 726
++ + Y P AR + + A L K I+ D L + ++ + S G KQ
Sbjct: 76 ALIEAPGFY--PNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQ 133
Query: 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV- 785
R+ +A A+ + D+ + D+P + +D L + + TV++ +H LSE+
Sbjct: 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHL---LSEIQ 190
Query: 786 ---DRILVLEGGQITQSG 800
DRI ++ G++ + G
Sbjct: 191 KVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 4e-09
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
IEL+ + + V LK ++ + +G G++GR+G+GK+TLI + L P GS
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1274 ILIDGVDICSMGLKDLR 1290
+L+DG D+ + K+LR
Sbjct: 62 VLVDGTDLTLLSGKELR 78
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 4e-09
Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 31/186 (16%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
G++ + + + V G G GK++LL + G + SG V G Q
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNG------TALAEQ 67
Query: 671 SGSIRDNILYGKPMDKARYDKAIKA-----------CALDKDINNFDHGDLTEIGQRGLN 719
NILY + +K A+ L +G G
Sbjct: 68 RDEPHRNILY------LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFE 121
Query: 720 ------LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TV 772
LS GQ++R+ LAR + A +++ D+P +A+D L + A L + V
Sbjct: 122 DLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDK-AGVALLAGLLRAHLARGGIV 180
Query: 773 ILVTHQ 778
+L THQ
Sbjct: 181 LLTTHQ 186
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 4e-09
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 42/201 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSIAYVSQTSWIQS 671
L+GVNL IK + A+ G G+GKS+L I+G +++ G I + +
Sbjct: 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTE-----GEILFKGE------ 64
Query: 672 GSIRDNILYGKPMDKAR--------YDKAIKACALDKDINNFDHGDLTEIGQRGLN--LS 721
+I P ++AR Y I +F R +N S
Sbjct: 65 -----DITDLPPEERARLGIFLAFQYPPEIPGVKN----ADF---------LRYVNEGFS 106
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781
GG+K+R ++ + + + D+ + D+P S +D + E K+V+++TH
Sbjct: 107 GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRL 166
Query: 782 LSEV--DRILVLEGGQITQSG 800
L + DR+ VL G+I +SG
Sbjct: 167 LDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 5e-09
Identities = 54/213 (25%), Positives = 97/213 (45%), Gaps = 26/213 (12%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYA---ILGEIPKISGTVNLYG-------------S 659
+N+ I+ + A+ G+ G GKS+ L + +I KI G V + G +
Sbjct: 21 INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80
Query: 660 IAYVSQTSWIQSGSIRDNI-----LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714
+ V Q + SI +NI L+G +K + + C + + F+ ++
Sbjct: 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCL--QKVGLFEEVK-DKLK 137
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL 774
Q L LSGGQ+QR+ +ARA+ + L D+P SA+D ++ + E + ++I+
Sbjct: 138 QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEELLKELSHNLSMIM 196
Query: 775 VTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
VTH ++ V D G++ + G +E
Sbjct: 197 VTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229
|
Length = 246 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-09
Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 45/214 (21%)
Query: 626 IAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYGSI----------AYVSQTS-WIQS 671
+AV GS GAGK++L+ A+ PK SG+V L G AYV Q +I +
Sbjct: 54 LAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPT 113
Query: 672 GSIRDNILY----------GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL--N 719
++R+++++ K + R D+ ++A L K N T IG G
Sbjct: 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN-------TRIGVPGRVKG 166
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-----KTVIL 774
LSGG+++R+ A + D + D+P S +D+ A + V+ L+ KT+I
Sbjct: 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS-----VVQVLKGLAQKGKTIIC 221
Query: 775 VTHQ--VEFLSEVDRILVLEGGQITQSGNYQELL 806
HQ E D+I+++ G++ G+ + +
Sbjct: 222 TIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 7e-09
Identities = 55/213 (25%), Positives = 98/213 (46%), Gaps = 28/213 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG-SIAYVSQT-- 666
L+GVNL +K + A+ G G+GKS+L Y I+G PK G + G I +S
Sbjct: 20 LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG-HPKYEVTEGEILFDGEDILELSPDER 78
Query: 667 -------SW-----IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE-I 713
++ I + D + M+ R + I + + + L E
Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAA--MNARRGARGILPEFIKELKEKAELLGLDEEF 136
Query: 714 GQRGLN--LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKT 771
+R +N SGG+K+R ++ + + + + + D+P S +D A + E + A E+
Sbjct: 137 LERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI-DALKIVAEGINALREEGR 195
Query: 772 -VILVTHQVEFLSEV--DRILVLEGGQITQSGN 801
V+++TH L + D++ VL G+I +SG+
Sbjct: 196 GVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGD 228
|
Length = 251 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 7e-09
Identities = 74/354 (20%), Positives = 125/354 (35%), Gaps = 95/354 (26%)
Query: 495 EAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSA------PLNAST--IFTVLATLRSMG 546
E + + + S+++ LG L G AST T++ L +
Sbjct: 220 EYRHHIIRAN-TFHLLAVNWSNIMLLG--LIGLVFWLALSLGWASTNVAATIVLVLLFLR 276
Query: 547 EPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN-------DDVRRISLQKSDRSVKI-- 597
P+ L ++ +V+F++I L + D + + L R+V+
Sbjct: 277 TPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWKTLEL----RNVRFAY 332
Query: 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY 657
Q+ F P +NL IK + + + G G+GKS+L + G LY
Sbjct: 333 QDNAFHVGP---------INLTIKRGELVFLIGGNGSGKSTLAMLLTG----------LY 373
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGKPMD---KARYDKAIKAC------------------ 696
QSG I + GKP+ Y K A
Sbjct: 374 QP----------QSGEILLD---GKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKAS 420
Query: 697 --ALDKDINNFDHGDLTEIGQRG---LNLSGGQKQRIQLARAVYNDADIYLFD------D 745
++K + + T + L LS GQK+R+ L A+ + DI + D D
Sbjct: 421 PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQD 480
Query: 746 P-FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798
P F L E + KT+ ++H + DR+L + GQ+++
Sbjct: 481 PAFRREFYQVLLPLLKE------QGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 9e-09
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 31/183 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
G++ + + + V G G+GK++LL + G P ++G V L G Q
Sbjct: 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNG------GPLDFQRD 69
Query: 673 SIRDNILYGKPMDKARYDKAIKACALDKDIN-NF---DHGD------LTEIGQRGL---- 718
SI +LY + IK L N F DH D L +G G
Sbjct: 70 SIARGLLY------LGHAPGIKT-TLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRP 122
Query: 719 --NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILV 775
LS GQ++R+ LAR + + +++ D+P +A+D A F E + + V+L
Sbjct: 123 VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVA-RFAEAMAGHCARGGMVVLT 181
Query: 776 THQ 778
THQ
Sbjct: 182 THQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 9e-09
Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 38/202 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI--LGE-IP-----------------KISG 652
++ VN DI A+ G G GKS+ L AI + + IP K +
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 653 TVNLYGSIAYVSQTSWIQSGSIRDNILYGKPM----DKARYD----KAIKACALDKDINN 704
V L I V Q SI DNI YG + DK + + K+++ AL ++++
Sbjct: 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD 174
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
+ + L LSGGQ+QR+ +AR + + +I L D+P SA+D A + E ++
Sbjct: 175 -------RLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKI--EDLI 225
Query: 765 AALEKK-TVILVTHQVEFLSEV 785
L T+++VTH ++ S V
Sbjct: 226 QELRGSYTIMIVTHNMQQASRV 247
|
Length = 286 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-08
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 1186 RIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIR---YRPNAPLVLKGITCTFSE 1242
RI+ + E P + + P GR EL + IR Y L+ + T
Sbjct: 289 RIRAMLA---EAPVVKDGSEPVPE----GRGEL-DVNIRQFTYPQTDHPALENVNFTLKP 340
Query: 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302
G +G+ G TGSGK+TL+S + R + + G I + + + L R +L+++ Q P L
Sbjct: 341 GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400
Query: 1303 FRGSVRTNL 1311
F +V N+
Sbjct: 401 FSDTVANNI 409
|
Length = 569 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+R + + ++L G+ G + ++G +GSGK+TL+ + L+ P G IL
Sbjct: 9 IEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 1276 IDGVDICSM---GLKDLRVKLSIIPQEPTLF 1303
IDG DI + L ++R ++ ++ Q+ LF
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALF 97
|
Length = 263 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 1e-08
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 4/144 (2%)
Query: 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPL-VLKG 1235
+ Y+ S+E I P +VE+ +I+ + ++ Y + + K
Sbjct: 345 ITEYMKSLEATNSLYEIINRKP-LVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKD 403
Query: 1236 ITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI-DGVDICSMGLKDLRVKLS 1294
+ T +EG VG +G GK+T++ + RL +P G I+I D ++ + LK R K+
Sbjct: 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIG 463
Query: 1295 IIPQEPTLFRGSVRTNLDPLGLYS 1318
++ Q+P LF S++ N+ LYS
Sbjct: 464 VVSQDPLLFSNSIKNNIK-YSLYS 486
|
Length = 1466 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I + Y P L+ ++ +G V + G +G+GK+TL+ ++ P G IL
Sbjct: 2 IRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 1276 IDGVDICSMGLKD---LRVKLSIIPQEPTLFRGSVRTNLDPLGL------YSDDEIWK-- 1324
++G D+ + ++ LR ++ ++ Q+ L RT + + L EI +
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLL--PDRTVYENVALPLRVIGKPPREIRRRV 118
Query: 1325 --ALEKCQLKTTISSLPNKLDSSG 1346
L+ LK +LP++L SG
Sbjct: 119 SEVLDLVGLKHKARALPSQL--SG 140
|
Length = 223 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-08
Identities = 56/246 (22%), Positives = 103/246 (41%), Gaps = 58/246 (23%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYG-----SIAYVSQ 665
L+ ++ I+ + + + G GAGKS L++ + G + SG + +Y YV +
Sbjct: 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI-IYHVALCEKCGYVER 74
Query: 666 TS--------------------WIQSGSIRDNI-------------LYG---------KP 683
S W S +R I LYG +
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134
Query: 684 MDKARY--DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741
+++ Y +A+ ++ H +T I + +LSGG+KQR+ LAR + + ++
Sbjct: 135 LEEIGYEGKEAVGRAVDLIEMVQLSH-RITHIAR---DLSGGEKQRVVLARQLAKEPFLF 190
Query: 742 LFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQS 799
L D+P +D TA + N A +++L +H E + ++ D+ + LE G+I +
Sbjct: 191 LADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEE 250
Query: 800 GNYQEL 805
G E+
Sbjct: 251 GTPDEV 256
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 40/215 (18%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGS-----------IAYV 663
+NL IK + + G G GK+++L + G E P G + + G I V
Sbjct: 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT-EGQIFIDGEDVTHRSIQQRDICMV 83
Query: 664 SQT-SWIQSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQ 715
Q+ + S+ +N+ YG M K R +A++ DL
Sbjct: 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV------------DLAGFED 131
Query: 716 RGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---T 771
R ++ +SGGQ+QR+ LARA+ + LFD+P S +DA+ ++ + + L+++ T
Sbjct: 132 RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK--IRELQQQFNIT 189
Query: 772 VILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+ VTH Q E + D ++V+ G+I Q G+ QEL
Sbjct: 190 SLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+ L + Y VL+ I+ + +G ++G G+GK+TL+ A+ L++P+ G I
Sbjct: 5 IEVENLTVSY--GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 1276 IDGVDICSMGLKDLRV 1291
I G + K LR+
Sbjct: 63 IFGKPV-RKRRKRLRI 77
|
Length = 254 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+R + + + I+ +G V ++G +G GKTTL+ + +P+ G IL
Sbjct: 6 LEIRNVSKSFGDFT--AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63
Query: 1276 IDGVDICSMGLKDL---RVKLSIIPQEPTLF 1303
+DG DI D+ + + ++ Q LF
Sbjct: 64 LDGEDI-----TDVPPEKRPIGMVFQSYALF 89
|
Length = 352 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-08
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290
+ + EG ++G +GSGK+TL+ L RL+EP G IL+DG DI + +LR
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELR 101
|
Length = 386 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 60/246 (24%), Positives = 109/246 (44%), Gaps = 51/246 (20%)
Query: 594 SVKIQEGNFSWDPELAIPT--LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
S+KI+ + L VN++I+ + + + G G+GKS+L+ + G + S
Sbjct: 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61
Query: 652 GTVNLYG---------------SIAYVSQTSWIQ--SGSIRDNILYGKPMD--------K 686
G + + G + V Q Q +I +I +G P++ +
Sbjct: 62 GKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFG-PINLGLSEEEIE 120
Query: 687 ARYDKAIKACALD----KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742
R +A+ LD KD + F+ LSGGQK+R+ +A V + I +
Sbjct: 121 NRVKRAMNIVGLDYEDYKDKSPFE-------------LSGGQKRRVAIAGVVAMEPKILI 167
Query: 743 FDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTHQVEFLSE-VDRILVLEGGQITQ 798
D+P + +D + N+ + L K+ T+ILV+H +E +++ DRI+V+ G+
Sbjct: 168 LDEPTAGLDPKGRDEILNK--IKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL 225
Query: 799 SGNYQE 804
G +E
Sbjct: 226 QGTPRE 231
|
Length = 287 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779
LSGGQK+R+ +A + +I +FD+P + +D + + A KTV ++TH +
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM 236
Query: 780 EFLSEV-DRILVLEGGQITQSGNYQEL 805
E + EV D ++V++ G+I ++G E+
Sbjct: 237 EHVLEVADEVIVMDKGKILKTGTPYEI 263
|
Length = 320 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 20/179 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------I 660
++ + + + + G GAGK++LL + G + +G V G +
Sbjct: 18 FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQAL 77
Query: 661 AYVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
Y+ I++ + +N+ + + + I AL + L ++
Sbjct: 78 LYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWE-ALAQ----VGLAGLEDLPVG--Q 130
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LS GQ++R+ LAR + A +++ D+PF+A+D A L A + V+L THQ
Sbjct: 131 LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQ 189
|
Length = 209 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 47/221 (21%), Positives = 98/221 (44%), Gaps = 45/221 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660
+RGV+ ++ + + G GAGK++ + + + SG + G I
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI 75
Query: 661 AYVSQTSWIQSG-SIRDNI-----LYGKPMDKA--RYDKAIKACAL----DKDINNFDHG 708
V Q + + +N+ LYG P + R D+ + L D+ + +
Sbjct: 76 GIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTY--- 132
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
SGG ++R+++AR++ + ++ D+P +D T A ++ + L+
Sbjct: 133 ------------SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE--YIEKLK 178
Query: 769 KK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
++ T++L TH +E ++ DR+ +++ G+I G +EL
Sbjct: 179 EEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 12/118 (10%)
Query: 1216 IELRQLKIRYRPNAPLVLKG---ITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I+ + Y P P+ KG I+ EG+ V +VG TGSGK+TL+ L++P+ G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 1273 SILIDGVDIC----SMGLKDLRVKLSIIPQ--EPTLFRGSVRTNLD--PLGL-YSDDE 1321
+I I G I + LK LR K+S++ Q E LF +V +++ P +S+DE
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDE 120
|
Length = 287 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 2e-08
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 26/195 (13%)
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAYVSQTSWIQ-SGSIRD 676
G GAGKS++ +LG I G + + G I V Q + ++R+
Sbjct: 37 GPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRE 96
Query: 677 NIL-YGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733
N+L +G+ M + I + + + + LSGG K+R+ LARA
Sbjct: 97 NLLVFGRYFGMSTREIEAVIPSLL---EFARLESKADVRVAL----LSGGMKRRLTLARA 149
Query: 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQVEFLSEV-DRILVL 791
+ ND + + D+P + +D H A L E + + L + KT++L TH +E + DR+ VL
Sbjct: 150 LINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVL 208
Query: 792 EGGQITQSGNYQELL 806
E G+ G L+
Sbjct: 209 ESGRKIAEGRPHALI 223
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-08
Identities = 64/231 (27%), Positives = 111/231 (48%), Gaps = 36/231 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISG-TVNLYGSIAYVS 664
LRGV+ I +K+ + G G+GKS+LL + GEI +++G + YG
Sbjct: 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEI-RVNGREIGAYGLRELRR 1384
Query: 665 QTSWIQS------GSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
Q S I G++R N+ L A A++ L + + + G + + +
Sbjct: 1385 QFSMIPQDPVLFDGTVRQNVDPFLEASS---AEVWAALELVGLRERVASESEGIDSRVLE 1441
Query: 716 RGLNLSGGQKQRIQLARAVYN-DADIYLFD------DPFSAVDAHTAATLFNECVMAALE 768
G N S GQ+Q + +ARA+ + L D DP A+D AT VM+A
Sbjct: 1442 GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDP--ALDRQIQAT-----VMSAFS 1494
Query: 769 KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA-FEQLVNA 818
TVI + H++ +++ D+I+V++ G + + G+ +EL++ + F +V A
Sbjct: 1495 AYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEA 1545
|
Length = 1560 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-08
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 16/113 (14%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I L L + Y +L+ ++ T + G R+G+VGR G+GK+TL+ L +EP G +
Sbjct: 4 ITLENLSLAYG--DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK 1328
+++ + QEP L +T LD + + E+ + L +
Sbjct: 62 RPKG-----------LRVGYLSQEPPLD--PEKTVLDYV-IEGFGELRELLAE 100
|
Length = 530 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (135), Expect = 3e-08
Identities = 58/240 (24%), Positives = 107/240 (44%), Gaps = 38/240 (15%)
Query: 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
++ ++++ F ++ E + L GV+ I + +++ G G+GKS+ I G +
Sbjct: 2 NKILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE 61
Query: 652 GTV-------------NLYGSIAYVSQTSWIQ--SGSIRDNILYGK-----PMDK--ARY 689
G V NL I V Q Q ++ D++ +G P ++ R
Sbjct: 62 GKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRV 121
Query: 690 DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
D+A+ A +N D + LSGGQKQR+ +A + +I + D+ S
Sbjct: 122 DEALLA------VNMLDFKT-----REPARLSGGQKQRVAVAGIIALRPEIIILDESTSM 170
Query: 750 VDAHTAATLFNECVMAALEKK---TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+D + V+ +++K TV+ +TH ++ + DRILV++ G+I + EL
Sbjct: 171 LDPTGRQEIMR--VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 4e-08
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
E+ L + Y VL+ ++ G + +VG G+GK+TL+ A+ L++P GSI +
Sbjct: 1 EVEDLTVSY--GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 1277 DGVDI 1281
G +
Sbjct: 59 FGKPL 63
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (134), Expect = 5e-08
Identities = 51/235 (21%), Positives = 100/235 (42%), Gaps = 25/235 (10%)
Query: 595 VKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652
+K ++ N+++ P A L ++L++K A+ G G+GKS+LL + G + G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 653 TVNLYGSIAYVSQTSWIQSGSIRDN--ILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
V + G I S + + +R +++ P + + +K A
Sbjct: 62 KVTV-GDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKA 120
Query: 711 TEIGQRGL---------------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755
+I L LSGGQ +R+ +A + + ++ + D+P + +D
Sbjct: 121 EKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR 180
Query: 756 ATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN----YQEL 805
+ +TV+LVTH ++ +++ D + +LE G I G +QE+
Sbjct: 181 IEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEV 235
|
Length = 288 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 5e-08
Identities = 63/258 (24%), Positives = 109/258 (42%), Gaps = 49/258 (18%)
Query: 584 RRISLQKSDRSV--KIQEGN-FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL 640
+++ L+ +D V I++G + W P + + GV L + + + V G G GKS+
Sbjct: 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFA 64
Query: 641 YAILGEIPKISGTVNLYG-SIAYVSQTSW------IQ--------SGSIRDNI------- 678
AI+G + G V G + + W IQ S + R I
Sbjct: 65 RAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEP 124
Query: 679 --LYGKPMDKARYDKAIKACA-----LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731
Y + + +KA L IN + H SGGQ QRI +A
Sbjct: 125 LRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPH-----------EFSGGQCQRIGIA 173
Query: 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTHQVEFLSEV-DR 787
RA+ + + + D+P SA+D A + N ++ L+++ ++I + H + + + DR
Sbjct: 174 RALILEPKLIICDEPVSALDVSIQAQVVN--LLQQLQREMGLSLIFIAHDLAVVKHISDR 231
Query: 788 ILVLEGGQITQSGNYQEL 805
+LV+ G + G Y E+
Sbjct: 232 VLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 6e-08
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 1248 VVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290
++G +GSGK+TL+ + RL+EP G +LIDG DI +M K+LR
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 6e-08
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 25/217 (11%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYGSIAYVSQTSW 668
I L V+L + Q V G+ GAGKS+L+ + L E P SG+V + G ++ S
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-SGSVIVDG--QDLTTLSN 74
Query: 669 IQSGSIRDNI-----LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI-GQRGL---- 718
+ R I + + + LD + +TE+ GL
Sbjct: 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKH 134
Query: 719 -----NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK--- 770
NLSGGQKQR+ +ARA+ ++ + L D+ SA+D T ++ ++ + ++
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILE--LLKEINRRLGL 192
Query: 771 TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T++L+TH+++ + + D + V+ G++ + G E+
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 7e-08
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK-DLR 1290
L ++ + G G++G G+GKTTL + + + P GS+L DG DI GL
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT--GLPPHEI 72
Query: 1291 VKLSIIP--QEPTLFRG-SVRTNL 1311
+L I Q P LF +V N+
Sbjct: 73 ARLGIGRTFQIPRLFPELTVLENV 96
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 7e-08
Identities = 46/218 (21%), Positives = 93/218 (42%), Gaps = 34/218 (15%)
Query: 605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVS 664
D + + + GV+ +K + + G GAGK++ L + G + +G + G V
Sbjct: 13 DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDG-FDVVK 71
Query: 665 QTSWIQSG--------------SIRDNI-----LYGKPMDKARYDKAIKACALDKDINNF 705
+ + + + R+N+ LYG D + A L++ +
Sbjct: 72 EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGD------ELTA-RLEELADRL 124
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
+L + +R S G +Q++ +ARA+ +D + L D+P + +D L +
Sbjct: 125 GMEELLD--RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE--FIR 180
Query: 766 AL--EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSG 800
L K ++ TH ++ + + DR++VL G++ G
Sbjct: 181 QLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 7e-08
Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 35/198 (17%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAI--LGE-IP--KISGTV-----NLYGS------ 659
VNL+I+ A G G GKS++L + + E IP ++ G V +LYG
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 660 ----IAYVSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALD--KDINNFDHGDLTE 712
I V Q + + SIRDN++ G ++ R K + + N ++ E
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN-----E 137
Query: 713 IGQR----GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
+ R G LSGGQ+QR+ +ARA+ + D+ L D+P SA+D +TL E ++ L+
Sbjct: 138 VKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP--ISTLAIEDLINELK 195
Query: 769 KK-TVILVTHQVEFLSEV 785
+ T+++VTH ++ + V
Sbjct: 196 QDYTIVIVTHNMQQAARV 213
|
Length = 258 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 8e-08
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 11/82 (13%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-----KTVIL 774
LSGG++QR+ +ARA+ N + L D+P +D + E ++ L++ TVI+
Sbjct: 138 LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS-----ERILDLLKRLNKRGTTVIV 192
Query: 775 VTHQVEFLSEVD-RILVLEGGQ 795
TH + + V R+++L+ G+
Sbjct: 193 ATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 9e-08
Identities = 53/242 (21%), Positives = 106/242 (43%), Gaps = 41/242 (16%)
Query: 594 SVKIQEGNFSWDPELAIPT--LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
S+K + ++ + P + L ++ +++ +A+ G G+GKS+L+ + S
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 652 GTVNLYG-----------------SIAYVSQTSWIQ--SGSIRDNILYGKPM------DK 686
GT+ + G ++ V Q Q ++ ++ +G P D+
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG-PKNFGFSEDE 120
Query: 687 ARYD--KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
A+ K +K L +D+ I + LSGGQ +R+ +A + + +I D
Sbjct: 121 AKEKALKWLKKVGLSEDL----------ISKSPFELSGGQMRRVAIAGVMAYEPEILCLD 170
Query: 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803
+P + +D + TVILVTH ++ ++E D +LVLE G++ + + +
Sbjct: 171 EPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230
Query: 804 EL 805
E+
Sbjct: 231 EI 232
|
Length = 287 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 1216 IELRQLKIRY-------RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268
+E++ LK + + + G++ + EG +G+VG +G GK+TL + L E
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 1269 PAGGSILIDGVDICSMGLKDLRVKL 1293
P G IL +G DI + K+ R +
Sbjct: 65 PTSGEILFEGKDITKL-SKEERRER 88
|
Length = 268 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 1e-07
Identities = 47/226 (20%), Positives = 90/226 (39%), Gaps = 34/226 (15%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS- 659
+ S + ++ V+ +++ + + + G G G+S L+ AI G SG + L G
Sbjct: 262 DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKD 321
Query: 660 -IAYVSQTSWIQSG-----------------SIRDNILYGKPMDKARYDK------AIKA 695
+ +S + G S+ +N++ G+ K AI+
Sbjct: 322 VLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRK 381
Query: 696 CALDKDINNFD---HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
A + I FD +LSGG +Q++ LAR + D+ + P +D
Sbjct: 382 FAREL-IEEFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDV 436
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQIT 797
+ + K V+L++ ++ + E+ DRI V+ G+I
Sbjct: 437 GAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 47/226 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L+ VNL + + A+ G GAGKS+L+ + G GT+ +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 659 --SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
I Y + S I ++ +N+ G+ + K K C +N D ++
Sbjct: 81 GIGIIY-QELSVIDELTVLENLYIGRHLTK-------KVCG----VNIIDWREMRVRAAM 128
Query: 717 GL--------------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
L NLS KQ +++A+ + DA + + D+P S++ LF
Sbjct: 129 MLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF--L 186
Query: 763 VMAALEK--KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
+M L K ++ ++H++ + + DR V++ G SG ++
Sbjct: 187 IMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
Length = 510 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
I L R+R V + G++ T G G++G G+GKTT + L L+EP G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTNL 1311
+DG D+ + R +L + L+ R + R NL
Sbjct: 62 ATVDGFDVVKEPA-EARRRLGFVSDSTGLYDRLTARENL 99
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 55/243 (22%), Positives = 89/243 (36%), Gaps = 50/243 (20%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658
P L V+L I+ + + + G G GKS+L +LG GTV+ G
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84
Query: 659 ----SIAYVSQTS-----------WIQSGSIRDNILYGKPMDKARYDKAIKACALDKDIN 703
+ V Q S I +R + KAR + + L +
Sbjct: 85 AFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED- 143
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ LSGGQ QRI +ARA+ + + D+ S +D A +
Sbjct: 144 ---------ADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAV-----I 189
Query: 764 MAALEK------KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL-LAGTAFEQL 815
+ L K + +TH + + R+ V++ GQI + + +LL A L
Sbjct: 190 LELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPAGRNL 249
Query: 816 VNA 818
+A
Sbjct: 250 QSA 252
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 1e-07
Identities = 59/239 (24%), Positives = 109/239 (45%), Gaps = 35/239 (14%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPK 649
VK+++ N + A+ + V++D A+ G G GKS++L +I L +
Sbjct: 5 VKLEQLNVHFGKNHAV---KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 650 ISGTVNLYGSIAYVSQTSWIQSGSIRDNI--LYGKPMD---KARYDKAIKACALDKDINN 704
++G + L + Y + SIR + ++ KP + YD I L+ +N
Sbjct: 62 VTGKILLDDTDIYDRGVDPV---SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNR 118
Query: 705 FDHGDLTEIGQR---------------GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
+ ++ E + + LSGGQ+QR+ +AR + ++ L D+P SA
Sbjct: 119 SEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASA 178
Query: 750 VDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+D +TL E ++ L EK T+I+VTH ++ + V D G + + G +++
Sbjct: 179 LDP--ISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF 235
|
Length = 252 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 57/223 (25%), Positives = 99/223 (44%), Gaps = 44/223 (19%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------- 659
+ L+G++ + + A+ G GAGKS+L+ I G +P SGT+ + G+
Sbjct: 23 GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAK 82
Query: 660 -----IAYVSQTSWI-QSGSIRDNILYGKPMDKARYDK-----AIKACALDKDINNFDHG 708
I V Q + + S+++NIL+G P +A K A C LD D +
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSS----A 138
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
E+ R Q +++ R + D+ I + D+P +++ LF+ + L
Sbjct: 139 GSLEVADR---------QIVEILRGLMRDSRILILDEPTASLTPAETERLFSR--IRELL 187
Query: 769 KKTV--ILVTHQVEFLSEV----DRILVLEGGQITQSGNYQEL 805
+ V + ++H+ L E+ DRI V+ G I SG +L
Sbjct: 188 AQGVGIVFISHK---LPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 1e-07
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMAALEKKTVIL 774
++LSGG+ QR+ +A A+ +A YLFD+P + +D AA KKT ++
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEG--KKTALV 127
Query: 775 VTHQVEFLSEV-DRILVLEG 793
V H + L + DRI V EG
Sbjct: 128 VEHDLAVLDYLSDRIHVFEG 147
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 64/256 (25%), Positives = 103/256 (40%), Gaps = 65/256 (25%)
Query: 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLY 641
D+R +S + +R + F ++L + + A+ G G GK++LL
Sbjct: 9 DMRGVSFTRGNRCI------FD-----------NISLTVPRGKITAIMGPSGIGKTTLLR 51
Query: 642 AILGEIPKISGTVNLYG-SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700
I G+I G + G +I +S++ LY + R ++ AL
Sbjct: 52 LIGGQIAPDHGEILFDGENIPAMSRSR-----------LYTV---RKRMSMLFQSGALFT 97
Query: 701 DINNFD--------HGDLTE-------------IGQRGL------NLSGGQKQRIQLARA 733
D+N FD H L +G RG LSGG +R LARA
Sbjct: 98 DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARA 157
Query: 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTHQV-EFLSEVDRIL 789
+ + D+ +FD+PF D T L +++ L T ++V+H V E LS D
Sbjct: 158 IALEPDLIMFDEPFVGQDPITMGVLVK--LISELNSALGVTCVVVSHDVPEVLSIADHAY 215
Query: 790 VLEGGQITQSGNYQEL 805
++ +I G+ Q L
Sbjct: 216 IVADKKIVAHGSAQAL 231
|
Length = 269 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 36/215 (16%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYV------ 663
+ L+G++ I+ + + G GAGK++ L + G + SG V + G + +
Sbjct: 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFL 93
Query: 664 ----------SQTSW----IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGD 709
+Q W I S + I Y + AR+ K + + D+ +
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAI-YD--LPPARFKKRLDELSELLDL-----EE 145
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
L + R LS GQ+ R ++A A+ ++ +I D+P +D + N E+
Sbjct: 146 LLDTPVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRER 203
Query: 770 KTVILVT----HQVEFLSEVDRILVLEGGQITQSG 800
T +L+T +E L+ R+LV++ G++ G
Sbjct: 204 GTTVLLTSHYMKDIEALA--RRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-07
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 7/160 (4%)
Query: 1186 RIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTR 1245
R+ + + P + P +G + + +L +LKGI+ G
Sbjct: 311 RLNELLAELPAAAERMPLPAP------QGALSVERLTAAPPGQKKPILKGISFALQAGEA 364
Query: 1246 VGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG 1305
+G++G +GSGK+TL L + P GS+ +DG D+ + L + +PQ+ LF G
Sbjct: 365 LGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG 424
Query: 1306 SVRTNLDPLGLYSDDE-IWKALEKCQLKTTISSLPNKLDS 1344
++ N+ G +D E + +A + I LP D+
Sbjct: 425 TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDT 464
|
Length = 580 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 2e-07
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP--- 1269
IE+R L + Y LK I + ++G +G GK+TL+ L R+ +
Sbjct: 5 IPAIEVRDLNLYY--GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPG 62
Query: 1270 --AGGSILIDGVDICSMGLK--DLRVKLSIIPQEPTLFRGSVRTNL 1311
G +L+DG +I + +LR ++ ++ Q+P F S+ N+
Sbjct: 63 ARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNV 108
|
Length = 253 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
+L G++ G + ++G G+GK+TL+ AL + P G + ++GV + S ++L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 1292 KLSIIPQEPTL 1302
+++PQ +L
Sbjct: 76 HRAVLPQNSSL 86
|
Length = 259 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVT 776
LSGGQKQR+ +A + + +FD+P + +D + N + L KK T+IL+T
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVN--TIKELNKKYGITIILIT 202
Query: 777 HQVEFLSEVDRILVLEGGQITQSGNYQEL 805
H +E E DRI+V++ G++ G +E+
Sbjct: 203 HYMEEAVEADRIIVMDSGKVVMEGTPKEI 231
|
Length = 280 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-07
Identities = 58/245 (23%), Positives = 98/245 (40%), Gaps = 39/245 (15%)
Query: 569 INAFLLDHELNNDDVR----RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLD----- 619
IN +L L ++VR I ++ P+L T L+
Sbjct: 306 INEYL-KGYLPEENVRFRPEEIEFEEKPPRDDKARDTLVEYPDLKK-TYGDFKLEVEEGE 363
Query: 620 IKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV-NLYGSIAYVSQT-SWIQSGSIRDN 677
I + I + G G GK++ + + G I G+ +L ++Y Q S G++ D
Sbjct: 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDL--KVSYKPQYISPDYDGTVEDL 421
Query: 678 ILYGKPMDKARYDKAIKACALDKDINN-----FDHGDLTEIGQRGLNLSGGQKQRIQLAR 732
+ AI++ + DL E + LSGG+ QR+ +A
Sbjct: 422 LR-----------SAIRSAFGSSYFKTEIVKPLNLEDLLE--RPVDELSGGELQRVAIAA 468
Query: 733 AVYNDADIYLFDDPFSA---VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRI 788
A+ +AD+YL D+P SA V+ + +KT ++V H + + V DR+
Sbjct: 469 ALSREADLYLLDEP-SAYLDVEQRIIVAKVIRRFIEN-NEKTALVVDHDIYMIDYVSDRL 526
Query: 789 LVLEG 793
+V EG
Sbjct: 527 IVFEG 531
|
Length = 591 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 35/195 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
L+ V++ I A+ G G GKS+ + + L + +I G V++ G Y
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 668 WIQ---------------SGSIRDNILYGKPMDKAR-------YDKAIKACALDKDINNF 705
++ SI DN+ YG + A + A+++ AL + ++
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSD- 146
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
+ L+LSGGQ+QR+ +AR + I LFD+P SA+D + A + + +M
Sbjct: 147 ------RLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARI-EDLIMN 199
Query: 766 ALEKKTVILVTHQVE 780
+ T+++VTH ++
Sbjct: 200 LKKDYTIVIVTHNMQ 214
|
Length = 258 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-07
Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 56/222 (25%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
P + +NL ++ +++A+ G G GK++LL ++GE+ SGTV W +
Sbjct: 333 PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK------------WSE 380
Query: 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFD---------HGDLT---------- 711
+ NI Y D A YD + D+ FD +
Sbjct: 381 NA----NIGY-YAQDHA-YD-------FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLF 427
Query: 712 ---EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
+I + LSGG+K R+ + + ++ + D+P + +D + +L ALE
Sbjct: 428 SQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM-----ALE 482
Query: 769 K--KTVILVTHQVEFLSEV-DRILVLEGGQITQ-SGNYQELL 806
K T+I V+H EF+S + RI+ + + SG Y+E L
Sbjct: 483 KYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYL 524
|
Length = 530 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 3e-07
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ELR + R+ L G++ + G ++G G+GK+TL+ L L +P G IL
Sbjct: 1 LELRGITKRFGGVK--ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 1276 IDGVDICSMGLKD-LRVKLSIIPQ 1298
+DG ++ +D R ++++ Q
Sbjct: 59 VDGKEVSFASPRDARRAGIAMVYQ 82
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 1238 CTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIP 1297
TF++G +VG +GSGK+TL++ + P G +LI+GVD+ + D V S++
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPV--SMLF 76
Query: 1298 QEPTLFRG-SVRTNLDPLGL 1316
QE LF +V N+ LGL
Sbjct: 77 QENNLFAHLTVEQNVG-LGL 95
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 3e-07
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 1272 GSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL--YSDDEIWKALEKC 1329
G IL+DGVDIC LKDLR SI+ QEP LF S+ N+ G + +++ +A +
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIK-FGKEDATREDVKRACKFA 1335
Query: 1330 QLKTTISSLPNKLDSS 1345
+ I SLPNK D++
Sbjct: 1336 AIDEFIESLPNKYDTN 1351
|
Length = 1466 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-07
Identities = 44/196 (22%), Positives = 80/196 (40%), Gaps = 43/196 (21%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
L+G+N + + +A+ G+ GAGKS+LL + G + SG V + G
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 660 --IAYVSQTSWIQ--SGSIRDNILYGKPMD--------KARYDKAIKACALDKDINNFDH 707
+ V Q Q + + ++ +G P++ + R +A+ A +
Sbjct: 68 QRVGLVFQDPDDQLFAADVDQDVAFG-PLNLGLSEAEVERRVREALTAV----GASGLRE 122
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD---AHTAATLFNECVM 764
+ LSGG+K+R+ +A AV D+ L D+P + +D +
Sbjct: 123 -------RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175
Query: 765 AALEKKTVILVTHQVE 780
TV++ TH V+
Sbjct: 176 EG---MTVVISTHDVD 188
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 75/343 (21%), Positives = 126/343 (36%), Gaps = 33/343 (9%)
Query: 974 FTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL-----LAIIG 1028
F I P+ + R+L L+SD+ + F V A L LA +
Sbjct: 87 FIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLS 146
Query: 1029 IMTFVTWQVLVVAIFAMVAVRFVQRY-YIATARELIRINGTTKAPVMNYTAETSQGV--V 1085
F+ V +V V + Y ++A ARE T+ + N +G +
Sbjct: 147 PKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARE-------TEDKLQNDYQTILEGRKEL 199
Query: 1086 TIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA--ALFLVLI 1143
T+ +R + L DA + H L N+ L +F + +
Sbjct: 200 TLNR----ERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLAL 255
Query: 1144 PRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYI---ISVERIKQFMHIPPEPPAI 1200
G+ + ++ + L + L L + ++ +I + P A
Sbjct: 256 SLGWAS---TNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPY--KAD 310
Query: 1201 VEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLI 1260
+ W +ELR ++ Y+ NA + I T G V ++G GSGK+TL
Sbjct: 311 FPRPQAFPDWK---TLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLA 366
Query: 1261 SALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
L L +P G IL+DG + + L+D R S + + LF
Sbjct: 367 MLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLF 409
|
Length = 546 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LSGGQK+R+ LA + + D +FD+P + +D + + KT+ILVTH
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224
Query: 779 VE-FLSEVDRILVLEGGQITQSGNYQELL 806
++ L R + + G+I + G+ ++L
Sbjct: 225 LDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 57/239 (23%), Positives = 97/239 (40%), Gaps = 38/239 (15%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA 661
F + + TL V+ +K + +++ G G+GKS+ + I G + SG + + G
Sbjct: 12 FKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD-L 70
Query: 662 YVSQTSWIQSGSIRDNI--LYGKPMDKARYDKAIKACALDKDI------NNFDHGDLTEI 713
+ W IR I ++ P D ++ D+ H ++ E
Sbjct: 71 LTEENVW----DIRHKIGMVFQNP------DNQFVGATVEDDVAFGLENKGIPHEEMKER 120
Query: 714 GQRGLN--------------LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
L LSGGQKQR+ +A AV I + D+ S +D L
Sbjct: 121 VNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180
Query: 760 NECVMAALEKK---TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+ + TVI +TH ++ ++ DR+LV++ GQ+ + +EL G QL
Sbjct: 181 K--TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGNDLLQL 237
|
Length = 279 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQ 778
LSGG K+R+ LARA+ ND D+ + D+P + +D A L E + + L + KT++L TH
Sbjct: 139 LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARGKTILLTTH- 196
Query: 779 VEFLSEV----DRILVLEGGQITQSGNYQELL 806
F+ E DR+ V+E G+ G L+
Sbjct: 197 --FMEEAERLCDRLCVIEEGRKIAEGAPHALI 226
|
Length = 306 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 3e-07
Identities = 39/181 (21%), Positives = 60/181 (33%), Gaps = 50/181 (27%)
Query: 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKP 683
+ I + G G+GK++L A+ E+ G V
Sbjct: 3 EVILIVGPPGSGKTTLARALARELGPPGGGV----------------------------- 33
Query: 684 MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743
I D D L +G + + SG + R+ LA A D+ +
Sbjct: 34 ---------IYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLIL 84
Query: 744 DDPFSAVDAHTAATLFNECVMAAL------EKKTVILVTHQVEFLSE------VDRILVL 791
D+ S +DA A L + L + TVIL T+ + L DR +VL
Sbjct: 85 DEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVL 144
Query: 792 E 792
Sbjct: 145 L 145
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 51/225 (22%)
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV----------NLY----GS 659
R V+ D+ + + + G G+GKS+LL + G + GT LY
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 660 IAYVSQTSWIQSGSIRDNILYG-------------KPMD-KARYDKAIKACALD----KD 701
+ +T W G + N G + M AR+ I+A A D +
Sbjct: 80 RRRLMRTEW---GFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVE 136
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
I D T I SGG +QR+Q+AR + + D+P +D A L +
Sbjct: 137 I------DPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD- 189
Query: 762 CVMAALEKK---TVILVTHQ---VEFLSEVDRILVLEGGQITQSG 800
++ L + VI+VTH L+ R+LV++ G++ +SG
Sbjct: 190 -LLRGLVRDLGLAVIIVTHDLGVARLLA--QRLLVMQQGRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 41/221 (18%)
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYG-----------S 659
+NL +K + +A+ G G+GKS AILG +P + SG + L G
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 660 IAYVSQ---TSWIQSGSIRDNIL-----YGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
IA + Q T++ ++ ++ + GK +AR I + L
Sbjct: 64 IATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQAR--ALILEA--------LEAVGLP 113
Query: 712 EIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MA 765
+ + L LSGG QR+ +A A+ + + D+P + +D A + +
Sbjct: 114 D-PEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR 172
Query: 766 ALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
L ++L+TH + ++ + D + V++ G+I + G +E+
Sbjct: 173 QLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 21/83 (25%), Positives = 45/83 (54%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
LR ++ + L++ G+ T G+ G++G GSGK+TL+ L + P G++ +
Sbjct: 1 GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60
Query: 1277 DGVDICSMGLKDLRVKLSIIPQE 1299
GVD+ + + +++++ Q+
Sbjct: 61 AGVDLHGLSRRARARRVALVEQD 83
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 4e-07
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 1215 RIELRQLKIRYRPNAPLVLK---GITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG 1271
+I+++ + + P LK ++ ++G + ++G+TGSGKTT I L L+ P
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 1272 GSI 1274
G+I
Sbjct: 62 GTI 64
|
Length = 305 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-07
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 51/229 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L V+ + + + + G GAGKS+ + I G +P SG+V + G +
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN------PK 71
Query: 673 SIRDNI------------------------LYGKP--MDKARYDKAIKACALDKDINNFD 706
++ NI +YG + K R ++ I+ L + +
Sbjct: 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-- 129
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+IGQ LS G +QR+ LA+A+ +D + + D+P + +D + + N V+
Sbjct: 130 -----KIGQ----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRN--VIKN 178
Query: 767 LEK-KTVILVTH---QVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811
+ K KT+IL TH +VE + DR++++ G+I EL A
Sbjct: 179 IGKDKTIILSTHIMQEVEAI--CDRVIIINKGKIVADKKLDELSAANKK 225
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 52/212 (24%), Positives = 82/212 (38%), Gaps = 41/212 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYGS---------- 659
L VN I + + + G G GKS+LL ++G + +G + L
Sbjct: 18 LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77
Query: 660 -IAYVSQTSWI-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
I + Q + + S+ N+L+ P +K A N L G G
Sbjct: 78 QIGILFQDALLFPHLSVGQNLLFALPAT-------LKGNARRNAAN----AALERSGLDG 126
Query: 718 L------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----HTAATLFNECVMAAL 767
LSGGQ+ R+ L RA+ L D+PFS +D +F+E A +
Sbjct: 127 AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGI 186
Query: 768 EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799
+ VTH ++ + R V+E Q Q+
Sbjct: 187 ---PTVQVTHDLQDVPAGSR--VIEMAQWEQN 213
|
Length = 213 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 4e-07
Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 28/206 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSIAYVSQTSWI-- 669
L+GV ++ + + G GAGKS+LL I G E P +G + G + +
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS-AGKIWFSGHDITRLKNREVPF 76
Query: 670 ---QSGSI-RDNILYGKPMDKARYDKA----IKACALDKDINNFDHGDLTEIG------Q 715
Q G I +D+ L MD+ YD I A A DI L ++G
Sbjct: 77 LRRQIGMIFQDHHLL---MDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN 133
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD---AHTAATLFNECVMAALEKKTV 772
+ LSGG++QR+ +ARAV N + L D+P +D + LF E + TV
Sbjct: 134 FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGV---TV 190
Query: 773 ILVTHQVEFLSEVD-RILVLEGGQIT 797
++ TH + +S R+L L G +
Sbjct: 191 LMATHDIGLISRRSYRMLTLSDGHLH 216
|
Length = 222 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 40/211 (18%)
Query: 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVN------LYGSIAYVSQ----------TS 667
Q +A+ G G+GKS+L + G I SG + +G ++ S+ TS
Sbjct: 40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTS 99
Query: 668 W--------IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
I +R N + + + ++ L D N+
Sbjct: 100 LNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH----------M 149
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVT 776
L+ GQKQR+ LARA+ I + D+ +++D + L N +M L++K + I VT
Sbjct: 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLIN--LMLELQEKQGISYIYVT 207
Query: 777 HQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+ + + D++LV+ G++ + G+ ++L
Sbjct: 208 QHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 51/225 (22%)
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV----------NLYG-SIA- 661
R V+ D+ + + + G G+GK++LL I G + +GTV +LY S A
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 662 --YVSQTSWIQSGSIRDNILYG-------------KPMDK-ARYDKAIKACALD----KD 701
+ +T W G + N G + M AR+ I+A A D +
Sbjct: 83 RRRLLRTEW---GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVE 139
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
I DL I SGG +QR+Q+AR + + D+P +D A L +
Sbjct: 140 I------DLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD- 192
Query: 762 CVMAALEKK---TVILVTHQ---VEFLSEVDRILVLEGGQITQSG 800
++ L ++ V++VTH L+ DR++V++ GQ+ +SG
Sbjct: 193 -LLRGLVRELGLAVVIVTHDLAVARLLA--DRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
T G V ++G +G+GK+TL++ + PA G ILI+GVD +S++
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDH--TASPPAERPVSML 76
Query: 1297 PQEPTLFRG-SVRTNLDPLGL 1316
QE LF +V N+ LGL
Sbjct: 77 FQENNLFAHLTVAQNIG-LGL 96
|
Length = 231 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 6e-07
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I L + Y P+ L+ I +G +G++G+ GSGK+TL L L+ P G +L
Sbjct: 2 IRLENVSYSY-PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 1276 IDGVDICSMG-LKDLRVKLSIIPQEP-TLFRG 1305
+ G+D L+ +R + I+ Q P T F G
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92
|
Length = 274 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 6e-07
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 34/212 (16%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQ-----TSWI 669
V+L I + A+ G+ G GKS+LL + G +G + L G +++V
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMF 97
Query: 670 QS------GSIRDNILYGKPMDKARYDKAIKACALDKD-INNFDHGDLT-----EIGQRG 717
QS ++ NI +G DK L K I + + L E +R
Sbjct: 98 QSYALFPHMTVEQNIAFGLKQDK-----------LPKAEIASRVNEMLGLVHMQEFAKRK 146
Query: 718 LN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KTVIL 774
+ LSGGQ+QR+ LAR++ + L D+P A+D + E V+ LE+ T ++
Sbjct: 147 PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE-VVDILERVGVTCVM 205
Query: 775 VTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
VTH Q E ++ RI ++ G+ Q G +E+
Sbjct: 206 VTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
Length = 377 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 6e-07
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE 780
SGG + RI LARA++ + D+ L D+P + +D H A L+ E + KT I+V+H E
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLH--AVLWLETYLLKW-PKTFIVVSHARE 402
Query: 781 FL-SEVDRILVLEGGQI-TQSGNY 802
FL + V IL L G ++ T G+Y
Sbjct: 403 FLNTVVTDILHLHGQKLVTYKGDY 426
|
Length = 718 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 1213 KGRIELRQLK-IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG 1271
+ L QL+ + Y +L I+ + G + G +G GK+TL+ + L+ P
Sbjct: 2 QENSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS 61
Query: 1272 GSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
G++L +G DI ++ + R ++S Q PTLF +V NL
Sbjct: 62 GTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNL 101
|
Length = 225 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 7e-07
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
++ L Y VL I+ +G G +G G+GKTT + + L++P G I
Sbjct: 1 LKTNDLTKTYGKK--RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT 58
Query: 1276 IDGVDI 1281
DG
Sbjct: 59 FDGKSY 64
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 7e-07
Identities = 52/199 (26%), Positives = 96/199 (48%), Gaps = 42/199 (21%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLL------------YAILGEIPKISGTVNLYG-- 658
L+G++++I+ +A G G GKS+ L + GEI +I G N+Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI-RIDGR-NIYDKG 76
Query: 659 --------SIAYVSQTSWIQSGSIRDNILYGKPMD--------KARYDKAIKACALDKDI 702
++ V Q SI +N+ YG ++ + R ++ +K AL ++
Sbjct: 77 VQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV 136
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ ++ + LSGGQ+QR+ +ARA+ + L D+P SA+D + A + E
Sbjct: 137 KD-------KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV--EE 187
Query: 763 VMAALEKK-TVILVTHQVE 780
++ L+K T+++VTH ++
Sbjct: 188 LIHELKKDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 8e-07
Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 52/228 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L VN+ I +A+ G G+GKS+LL + G + SGTV + G + +
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITAGKKNKKLK 81
Query: 673 SIRD--------------------NILYGKPMD--------KARYDKAIKACALDKDI-- 702
+R +I +G PM+ K + + I+ L +++
Sbjct: 82 PLRKKVGIVFQFPEHQLFEETVEKDICFG-PMNFGVSEEDAKQKAREMIELVGLPEELLA 140
Query: 703 -NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ F+ LSGGQ +R+ +A + + ++ + D+P + +D +
Sbjct: 141 RSPFE-------------LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME- 186
Query: 762 CVMAALEKK---TVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805
+ L K+ T +LVTH +E + D+I+V+ G + G +E+
Sbjct: 187 -MFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
Length = 290 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 9e-07
Identities = 75/310 (24%), Positives = 139/310 (44%), Gaps = 38/310 (12%)
Query: 518 IFLGCALTGSA---PLNASTIF-TVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAF- 572
+ +GCAL +A ++A+ I VLA L G P+ M+ AL I+ Q +++ R+ F
Sbjct: 250 LLIGCALFAAAMFASIDAAAISAFVLALLYIKG-PLEMLVSALPILAQAQIACQRLADFG 308
Query: 573 ---------LLDHELNNDDVRRISLQKSDRSVKIQEGNFSW-DPELAIPTLRG-VNLDIK 621
L + D+V ++ KS S+++++ + + PE + G ++L I
Sbjct: 309 ERFNEPEPELELSD--ADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIA 366
Query: 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAYVSQTSWIQSGS------- 673
+ + G G GKS+L G G + L G+ ++ S+ + S
Sbjct: 367 QGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFH 426
Query: 674 IRDNILYGKPMDKARYDKA---IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730
+ D+++ + A D A ++ + + D G T LS GQ++R+ L
Sbjct: 427 LFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTT-----ALSTGQQKRLAL 481
Query: 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KTVILVTHQVEFLSEVDRI 788
A D I LFD+ ++A F E ++ L++ KT+I+++H ++ D+I
Sbjct: 482 ICAWLEDRPILLFDE-WAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQI 540
Query: 789 LVLEGGQITQ 798
+ L G I +
Sbjct: 541 IKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 9e-07
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 27/191 (14%)
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------IAYVSQTSWIQSGSIRD 676
G G GKS+LL + I SGT+ G ++Y +QT + ++ D
Sbjct: 40 GPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYD 99
Query: 677 NILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN-LSGGQKQRIQLARAVY 735
N+++ + + D A D+ F D I + + LSGG+KQRI L R +
Sbjct: 100 NLIFPWQIRNQQPDPA----IFLDDLERFALPD--TILTKNIAELSGGEKQRISLIRNLQ 153
Query: 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK--TVILVTHQVEFLSEVDRILVLEG 793
+ L D+ SA+D NE + + ++ V+ VTH + ++ D+++ L+
Sbjct: 154 FMPKVLLLDEITSALDESN-KHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ- 211
Query: 794 GQITQSGNYQE 804
+G QE
Sbjct: 212 ---PHAGEMQE 219
|
Length = 225 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 9e-07
Identities = 58/247 (23%), Positives = 98/247 (39%), Gaps = 55/247 (22%)
Query: 605 DPELAIPTLRGVNLDIKWAQKI---------------AVCGSVGAGKSSLLYAILGEIPK 649
D + A P + VNL + +A K ++ G G+GK++ L + K
Sbjct: 14 DVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDK 73
Query: 650 ISG-------------------TVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYD 690
+SG + + + Q SI DN+L G K
Sbjct: 74 VSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR 133
Query: 691 KAIKACALDKDINNFDHGDLTEIG----------QRGLNLSGGQKQRIQLARAVYNDADI 740
K + A LTE+G LSGGQ+Q + LAR + + ++
Sbjct: 134 KEFRGVA---------QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEV 184
Query: 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQS 799
L D+P SA+D T + E + + ++ TVI+VTH + + + DR + G++ +
Sbjct: 185 LLLDEPTSALDPTTTEKI-EEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEE 243
Query: 800 GNYQELL 806
G ++L
Sbjct: 244 GPTEQLF 250
|
Length = 276 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 9e-07
Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 30/228 (13%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI 660
+F E +I ++ ++ +I + + G+ GAGKS+ L + G + SG V + G
Sbjct: 28 HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD 87
Query: 661 ------AYVSQTSWI---QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
Y+ + + D +D K I D+ D LT
Sbjct: 88 PFRRREEYLRSIGLVMGQKLQLWWDLPA----LDSLEVLKLIYEIPDDEFAERLD--FLT 141
Query: 712 EI-------GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN---- 760
EI LS GQ+ R +LA A+ + + D+P +D + A +
Sbjct: 142 EILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE 201
Query: 761 ECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLL 807
+ TV+L TH + ++ + DR+L+++ GQ+ G +L
Sbjct: 202 YNEE---RQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246
|
Length = 325 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-06
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV----KLSIIP 1297
+G ++G +GSGK+T + L RL+EP G I IDG +I +LR K+ ++
Sbjct: 18 KGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVF 77
Query: 1298 QEPTLF 1303
Q+ LF
Sbjct: 78 QQFALF 83
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 1216 IELRQLKIRYRP--NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
+E+ L Y A ++ ++ EG G++G G+GKTTL+ + L+ P G
Sbjct: 2 LEVTDLTKSYGSKVQA---VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGK 58
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTNL 1311
+ IDGVD +R K+ ++ E L+ R + R NL
Sbjct: 59 VTIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENL 96
|
Length = 245 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 1e-06
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----P 1269
+IE+R LK+ + VL G+ + T ++G +GSGK+TL+ RL+E
Sbjct: 3 KIEIRDLKVSF--GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 1270 AGGSILIDGVDICSMGLKDLRVKLSIIPQEP 1300
G + +DG DI M + +LR ++ ++ Q P
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIP 91
|
Length = 250 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 1192 HIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGR 1251
+P + P ++E + +P KG +R + + GI+ T G +G+VG
Sbjct: 268 PLPEDAPVLLEVEDLRVWFPIKGGF------LRRTVDHLRAVDGISLTLRRGQTLGLVGE 321
Query: 1252 TGSGKTTLISALFRLVEPAGGSILIDGVDICSM---GLKDLRVKLSIIPQEP 1300
+GSGK+TL AL RL+ G I DG DI + ++ LR ++ ++ Q+P
Sbjct: 322 SGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP 372
|
Length = 534 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E R LK Y P+ LKGI +G V ++G G+GK+TL +++P G +L
Sbjct: 2 LETRDLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 1276 IDG--VDICSMGLKDLRVKLSIIPQEP--TLFRGSVRTNL--DPLGL-YSDDEIWK 1324
I G + L ++R + I+ Q P LF +V ++ PL L S +E+ K
Sbjct: 61 IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK 116
|
Length = 275 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 23/128 (17%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ R L ++ +G++ T + G + V G G GKTTL+ L L+ P G +
Sbjct: 1 LAARNLA--CSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVR 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG---------SVRTNLD---PLGLYSDDEIW 1323
+G + + P L+ G S NL + + I
Sbjct: 59 WNGTALA---------EQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIE 109
Query: 1324 KALEKCQL 1331
AL L
Sbjct: 110 DALAAVGL 117
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 1e-06
Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 34/209 (16%)
Query: 611 PTL-RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----IAYVSQ 665
P L + +N I +IA+ G G GKS++L I GE+ SGTV + S +A SQ
Sbjct: 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV--FRSAKVRMAVFSQ 579
Query: 666 TSWIQSGSIRDN-ILY------GKPMDKARYDKAIKACALDKDINNFD-HGDLTEIGQRG 717
+ + N +LY G P K R + +F G+L Q
Sbjct: 580 HH-VDGLDLSSNPLLYMMRCFPGVPEQKLR-----------AHLGSFGVTGNLAL--QPM 625
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
LSGGQK R+ A+ + I L D+P + +D L V L + V++V+H
Sbjct: 626 YTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLV---LFQGGVLMVSH 682
Query: 778 QVEFLS-EVDRILVLEGGQITQ-SGNYQE 804
+S VD + V+ G++T G + +
Sbjct: 683 DEHLISGSVDELWVVSEGKVTPFHGTFHD 711
|
Length = 718 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 50/215 (23%), Positives = 101/215 (46%), Gaps = 28/215 (13%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL------YGSIAYVSQTSWI 669
++ ++ Q +A+ G G+GKS+L + G I SG + + +G +Y SQ +
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRM 91
Query: 670 ----QSGSIRDNILYGKPMD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN----- 719
S S+ + +D R + ++ +K I L ++G +
Sbjct: 92 IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIE----TLRQVGLLPDHASYYP 147
Query: 720 --LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVIL 774
L+ GQKQR+ LARA+ + + D+ +++D + L N +M L++K + I
Sbjct: 148 HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN--LMLELQEKQGISYIY 205
Query: 775 VTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLA 808
VT + + + D++LV+ G++ + G+ ++L +
Sbjct: 206 VTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 56/221 (25%), Positives = 95/221 (42%), Gaps = 39/221 (17%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLY----------------AILGEIPKISG----TVN 655
+++DI+ A+ G G GKS+ L IL E I VN
Sbjct: 40 ISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99
Query: 656 LYGSIAYVSQTSWIQSGSIRDNIL----YGKPMDKARYDKAIK----ACALDKDINNFDH 707
L I V Q SI +NI Y K+ D+ ++ AL ++ + H
Sbjct: 100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLH 159
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
L+LSGGQ+QR+ +AR + + L D+P SA+D + A + E ++ L
Sbjct: 160 -------SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI--EELITEL 210
Query: 768 EKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+++ ++I+VTH ++ V DR G + + +++
Sbjct: 211 KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251
|
Length = 268 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 2e-06
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI- 1274
IEL L Y L+LK I+ T + G R+G+VGR G+GK+TL+ + +EP G +
Sbjct: 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 1275 LIDGVDIC-----SMGLKDLRVKLSII 1296
V I S G K +R+ L+ +
Sbjct: 59 WGSTVKIGYFEQLSGGEK-MRLALAKL 84
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 39/221 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV---------------NLY 657
L+G+N++IK + A+ G GAGKS+L + G + SG + L
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 658 GSIAYVSQTSWIQ--SGSIRDNILYGK-----PMDKA--RYDKAIKACALDKDINNFDHG 708
S+ V Q Q S S+ ++ +G P D+ R D A+K ++ + H
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHC 141
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
LS GQK+R+ +A + + + + D+P + +D + + + ++ +
Sbjct: 142 -----------LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM-KLLVEMQK 189
Query: 769 KK--TVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELL 806
+ T+I+ TH ++ + D + V++ G++ GN +E+
Sbjct: 190 ELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
|
Length = 283 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I + + RY A LK ++ + EG V +VG GSGK+TL L L+ P G+I
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEP 1300
+ G+ + + D+R ++ ++ Q P
Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQNP 90
|
Length = 279 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + Y P L ++ +G + + G +G+GKTTL+ L+ + P+ G +
Sbjct: 2 IEFHNVSKAY-PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 1276 IDGVDICSMGLKD---LRVKLSIIPQE 1299
I G D+ + + LR ++ ++ Q+
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQD 87
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-06
Identities = 48/204 (23%), Positives = 98/204 (48%), Gaps = 19/204 (9%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
P + +N+ Q A G GAGK++ L + G +P SGTV + G + + Q
Sbjct: 944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQ 1003
Query: 671 S-------------GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
S ++ ++IL+ + +++A L+ + D G + +
Sbjct: 1004 SLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEA----QLEMEAMLEDTGLHHKRNEEA 1059
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
+LSGG ++++ +A A DA + + D+P S VD ++ +++ + ++ +T+I+ TH
Sbjct: 1060 QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIW-DLLLKYRSGRTIIMSTH 1118
Query: 778 QVEFLSEV-DRILVLEGGQITQSG 800
++ + DRI ++ G++ SG
Sbjct: 1119 HMDEADLLGDRIAIISQGRLYCSG 1142
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 24/185 (12%)
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQT-SWIQSGSIRD 676
I ++ I + G G GK++ + + G + G + + +++Y Q G++RD
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD 80
Query: 677 NILYGKPMDK---ARYDKAI-KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732
+L D + I K +++ ++ + LSGG+ QR+ +A
Sbjct: 81 -LLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAA 128
Query: 733 AVYNDADIYLFDDPFSAVDAHT---AATLFNECVMAALEKKTVILVTHQVEFLSEV-DRI 788
+ DADIYL D+P + +D A+ + +KT +V H + + + DR+
Sbjct: 129 CLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN--EKTAFVVEHDIIMIDYLADRL 186
Query: 789 LVLEG 793
+V EG
Sbjct: 187 IVFEG 191
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ L + Y +L ++ + G ++G G GK+TL+ RL+ P G++
Sbjct: 3 LRTENLTVGY--GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVF 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVR 1308
+ I + + L +L+++PQ G +VR
Sbjct: 61 LGDKPISMLSSRQLARRLALLPQHHLTPEGITVR 94
|
Length = 255 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 3e-06
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 1231 LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290
L +K + EG ++G +GSGK+T++ L RL+EP G +LIDGVDI + +LR
Sbjct: 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELR 101
|
Length = 400 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISAL--FRLVEPAGGSILIDGVDICSMGLKDL 1289
+LK ++ G ++G +G+GK+TL++AL R G +LI+G + +
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL---DKRSF 80
Query: 1290 RVKLSIIPQE----PTLFRGSVRTNLD 1312
R + +PQ+ PTL +VR L
Sbjct: 81 RKIIGYVPQDDILHPTL---TVRETLM 104
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 63/233 (27%)
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT-------- 666
G++L ++ Q + + G G+GKS+L A+L IP G I + Q
Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-------QGEIRFDGQDIDGLSRKE 357
Query: 667 -----SWIQ--------SGSIRDNI---------LYGKPMDKARYDK----AIKACALDK 700
+Q S S R + ++ + A D+ A++ LD
Sbjct: 358 MRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP 417
Query: 701 DI-NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
N + H SGGQ+QRI +ARA+ ++ L D+P SA+D A +
Sbjct: 418 ATRNRYPH-----------EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVL 466
Query: 760 NECVMAALEKK---TVILVTHQ---VEFLSEVDRILVLEGGQITQSGNYQELL 806
+ ++ L++K + + ++H V L R++V+ G+I + G + +
Sbjct: 467 D--LLRDLQQKHGLSYLFISHDLAVVRALC--HRVIVMRDGKIVEQGPTEAVF 515
|
Length = 534 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+ L +Y ++G++ G G++G G+GKTT I L L++P G
Sbjct: 1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTL 1302
+ G D+ +++R ++ I+ Q+ ++
Sbjct: 59 VAGHDVVREP-REVRRRIGIVFQDLSV 84
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278
LK I+ +G RVG++G G+GK+TL+ + + +P G + + G
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG 88
|
Length = 249 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 4e-06
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
+L+G++ +G V+GR G GKTTL+ L L+ GSI +DG DI + + R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE-RA 73
Query: 1292 KLSI--IPQEPTLF-RGSVRTNL 1311
+ I +PQ +F R +V NL
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENL 96
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG----LKD 1288
+ + F +G +VG+TGSGK+TLI + L++P G++ +D + I ++
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 1289 LRVKLSIIPQ--EPTLFRGSV 1307
+R ++ ++ Q E LF +V
Sbjct: 83 VRKRIGMVFQFPESQLFEDTV 103
|
Length = 286 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 42/233 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
+ VN + + + A+ G G+GKS+L+ I + +GTV +
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 659 ---SIAYVSQ--TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
I V Q S + ++ I++G K D+ +K A L ++
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDE-VKNYAHRL---------LMDL 132
Query: 714 G-------QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA---HTAATLFNECV 763
G Q +SGGQ ++I + + + DI + D+P + +D L
Sbjct: 133 GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS-- 190
Query: 764 MAALEKKTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+ E KT+ILV+H + E D ++V++ G I + +EL
Sbjct: 191 LQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADW 243
|
Length = 286 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 49/211 (23%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL--------------YGSIA 661
V+L + + + + G GAGK++ Y ++G +P+ +G + + I
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81
Query: 662 YVSQTSWI-QSGSIRDNILYGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
Y+ Q + I + S+ DN++ + D + + +A L ++ + D +GQ
Sbjct: 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD--SMGQ--- 136
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK--TVILVT 776
+LSGG+++R+++ARA+ + L D+PF+ VD + + + ++ L V++
Sbjct: 137 SLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI--KRIIEHLRDSGLGVLITD 194
Query: 777 HQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
H V E L+ +R ++ G + G E+L
Sbjct: 195 HNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225
|
Length = 241 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 4e-06
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 35/222 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI--LGEI----PKISGTVNLYGSIAY---- 662
L+ + + I + G G+GKS+LL + L EI K+ G V +G +
Sbjct: 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85
Query: 663 ----------VSQTSWIQSGSIRDNILYGKPM------DKARYDKAIKACALDKDINNFD 706
Q + SI DNI Y P+ +K K ++ C +
Sbjct: 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAY--PLKSHGIKEKREIKKIVEECLRKVGLWKEV 143
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+ L + LSGGQ+QR+ +ARA+ + L D+P S +D + + E ++
Sbjct: 144 YDRLNSPASQ---LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI--EKLITE 198
Query: 767 LEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
L+ + +++V+H + ++ V D + L G++ + G+ E+
Sbjct: 199 LKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 5e-06
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 1207 PSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL 1266
SS K I R+ ++ LK ++ G R+G++GR G+GK+TL+ L +
Sbjct: 16 GSSSLKKLGILGRKGEVGEFW----ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI 71
Query: 1267 VEPAGGSILIDG 1278
P G++ + G
Sbjct: 72 YPPDSGTVTVRG 83
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE R L Y + L I +R+ V+G G+GK+TL +++P GS+L
Sbjct: 4 IETRDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEP 1300
I G I ++++R + ++ Q P
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNP 87
|
Length = 277 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 5e-06
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 1223 IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC 1282
+ R +L ++ T G V ++G G+GK+TL+ AL + P G + ++G +
Sbjct: 8 LSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLA 67
Query: 1283 SMGLKDLRVKLSIIPQEPTL 1302
+L + +++PQ +L
Sbjct: 68 DWSPAELARRRAVLPQHSSL 87
|
Length = 258 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-06
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 1230 PLVLK---GITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL 1286
P LK G+T EG +GVVG +G GK+T A+ LV+ G + G D+ M
Sbjct: 31 PKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKD 90
Query: 1287 KDLRVK---LSIIPQEP 1300
+ R + +I Q+P
Sbjct: 91 DEWRAVRSDIQMIFQDP 107
|
Length = 331 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 1216 IELRQLKIRYRPNAP-LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
IE++ L +Y+ + L ++ +G + ++G GSGK+T + + L+E G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEP 1300
+IDG + + D+R K+ ++ Q P
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNP 90
|
Length = 279 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 40/222 (18%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYGS-------- 659
L+GVNL +K + A+ G G+GKS+L I G P SGT+ G
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPD 72
Query: 660 ----------------IAYVSQTSWIQSGS-IRDNILYGKPMDKARYDKAIKACALDKDI 702
I VS +++S R + +P+D + K +KA +
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM 132
Query: 703 NNFDHGDLTEIGQRGLN--LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
+ E R +N SGG+K+R ++ + + + + D+ S +D +
Sbjct: 133 DE-------EFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 761 ECVMAALEKKTVILVTHQVEFLSEV--DRILVLEGGQITQSG 800
++ +++TH L+ + D + VL G+I +SG
Sbjct: 186 GINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 5e-06
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 39/210 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQS 671
L VNL ++ A+ G GAGKS+LL + G K SG++ G I + S +++
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 672 G--------------SIRDNILYGK-PM-------DKARYD-KAIKACALDKDINNFDHG 708
G S+ DN+ G+ P DK D KAI LD DI+
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFD-ELDIDIDPRA-- 130
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
+ LS Q Q I++A+A +A I + D+P S++ LF ++ L+
Sbjct: 131 -------KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT--IIRKLK 181
Query: 769 KK--TVILVTHQVEFLSEV-DRILVLEGGQ 795
++ ++ ++H++E + ++ D I +L GQ
Sbjct: 182 ERGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-06
Identities = 58/267 (21%), Positives = 106/267 (39%), Gaps = 68/267 (25%)
Query: 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL 644
R+ + +K+ L+ P + V+ ++ + + V G +GAG++ L+ +
Sbjct: 248 RLDKAPGEVRLKVDN--------LSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLY 299
Query: 645 GEIPKISGTVNLYGS--------------IAYVSQT----SWIQSGSIRDNILYGKPMDK 686
G +P+ SG V L G I Y+S+ + S+++N+
Sbjct: 300 GALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENM-------- 351
Query: 687 ARYDKAIKACALD---KDINNFDHGDLTE---------------IGQRGLNLSGGQKQRI 728
AL + + H D + + Q LSGG +Q++
Sbjct: 352 -------SLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKV 404
Query: 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV-EFLSEVDR 787
+AR + + + D+P VD ++ E ++ILV+ ++ E L DR
Sbjct: 405 AIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDR 464
Query: 788 ILVLEGGQITQSGNY------QELLLA 808
ILV+ G+I SG + QE L+A
Sbjct: 465 ILVMHEGRI--SGEFTREQATQEKLMA 489
|
Length = 501 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQ 778
LSGGQKQR+ +A + + + + D+ S +D L + E T+I +TH
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202
Query: 779 VEFLSEVDRILVLEGGQITQSGNYQEL 805
+ E D ++V+ G + + G E+
Sbjct: 203 LSEAMEADHVIVMNKGTVYKEGTPTEI 229
|
Length = 269 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-06
Identities = 27/94 (28%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+ L RY+ + LKG++ + EG++ ++G G+GK+TL+ L + P G +
Sbjct: 5 IEVEDLHFRYK-DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEP--TLFRGSV 1307
+ G ++ + K +R K+ ++ Q+P +F +V
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTV 97
|
Length = 274 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 8e-06
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ELR + + L G++ T G ++G G+GK+TL+ L + P G IL
Sbjct: 9 LELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL 66
Query: 1276 IDGVDICSMGLKD-LRVKLSIIPQEPTLF 1303
IDG + +D L ++ + QE +L
Sbjct: 67 IDGKPVAFSSPRDALAAGIATVHQELSLV 95
|
Length = 500 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 8e-06
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 1228 NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG-L 1286
L L + +G + ++GR GSGK+T+ + L+ P+ G + +DG+D L
Sbjct: 21 TEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENL 80
Query: 1287 KDLRVKLSIIPQEP 1300
D+R K ++ Q P
Sbjct: 81 WDIRNKAGMVFQNP 94
|
Length = 280 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 8e-06
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 40/188 (21%)
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SI-----AYVSQTS 667
G++ + + + + G GAGK+SLL + G +G V G I Y
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77
Query: 668 WI--QSGSIRD------NILYGKPMDKARYDKAIKACALDKDINNFDHGD-LTEIGQRGL 718
++ Q G I+ N+ + L ++ + L ++G G
Sbjct: 78 YLGHQPG-IKTELTALENLRF--------------YQRLHGPGDDEALWEALAQVGLAGF 122
Query: 719 ------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKK- 770
LS GQ++R+ LAR A +++ D+PF+A+D A L E ++A E+
Sbjct: 123 EDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARL--EALLAQHAEQGG 180
Query: 771 TVILVTHQ 778
VIL THQ
Sbjct: 181 MVILTTHQ 188
|
Length = 204 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I + + +Y+ +A LK ++ +G +VG GSGK+T+ + + + G I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEP-TLFRGSV 1307
+ I + LR + I+ Q P F GS+
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSI 100
|
Length = 269 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 9e-06
Identities = 55/242 (22%), Positives = 98/242 (40%), Gaps = 39/242 (16%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658
+F + A L V+ ++ + +A+ G GAGKS+L + G +++ G
Sbjct: 8 SFRYGARRA---LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHD 64
Query: 659 ----------SIAYVSQTSWIQSG-SIRDNILY-----GKPMDKARYDKAIKACALDKDI 702
+ V Q + S+R N+ Y G +AR I +
Sbjct: 65 LRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR--ARIAELLARLGL 122
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ E L+GG ++R+++ARA+ + + L D+P +D + A +
Sbjct: 123 AERADDKVRE-------LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI-TAH 174
Query: 763 V--MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA------GTAFEQ 814
V +A + +V+ TH V+ + DR++VL G++ G EL A AF
Sbjct: 175 VRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGADLEAAFLA 234
Query: 815 LV 816
L
Sbjct: 235 LT 236
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 9e-06
Identities = 51/237 (21%), Positives = 89/237 (37%), Gaps = 56/237 (23%)
Query: 626 IAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI-------------AYVSQTSWIQSG 672
+ + G GAGKS+LL + G SG++ G AY+SQ
Sbjct: 28 LHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARHRAYLSQ------- 79
Query: 673 SIRDNILYGKPM---------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
+ + P+ DK R L+ D ++G+ LSGG
Sbjct: 80 --QQTPPFAMPVWHYLTLHQPDKTR------TELLNDVAGALALDD--KLGRSTNQLSGG 129
Query: 724 QKQRIQLARAVYN-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVT 776
+ QR++LA V + L D+P +++D + L + +++ +
Sbjct: 130 EWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSS 189
Query: 777 HQVEF-LSEVDRILVLEGGQITQSGNYQELLLA-------GTAFEQL-VNAHRDAIT 824
H + L R +L+ G++ SG +E+L G F +L + H I+
Sbjct: 190 HDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAYGMNFRRLDIEGHPMLIS 246
|
Length = 248 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-05
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
VLK I+ +G + V G TGSGK++L+ + +EP+ G I G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK-CQLKTTISSLPNK 1341
++S PQ + G+++ N+ GL D+ + ++ K CQL+ I+ P K
Sbjct: 488 RISFSPQTSWIMPGTIKDNI-IFGLSYDEYRYTSVIKACQLEEDIALFPEK 537
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PA 1270
IE+ L + Y LK I + ++G +G GK+TL+ +L R+ +
Sbjct: 2 IEIENLNLFYGEKE--ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRI 59
Query: 1271 GGSILIDGVDICSMGLKD--LRVKLSIIPQEPTLFRGSVRTN 1310
G +L DG DI + LR ++ ++ Q+P F S+ N
Sbjct: 60 EGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDN 101
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 26/202 (12%)
Query: 627 AVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVS---------------QT-SWIQ 670
+ G GAGK++L+ I G+ G V G Q + +
Sbjct: 35 VLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFE 94
Query: 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHG----DLTEIGQR-GLNLSGGQK 725
+ ++R+N+ DK+ + ++ A ++ D L + R LS GQK
Sbjct: 95 NLTVRENLELALNRDKSVF-ASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153
Query: 726 QRIQLARAVYNDADIYLFDDPFSAV-DAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784
Q +++ + D + L D+P + + DA T T E + + K ++++V H + F+ E
Sbjct: 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKT--AELLKSLAGKHSILVVEHDMGFVRE 211
Query: 785 V-DRILVLEGGQITQSGNYQEL 805
+ D++ VL G + G+ E+
Sbjct: 212 IADKVTVLHEGSVLAEGSLDEV 233
|
Length = 249 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 1216 IELRQLKIRYRPNAPL--VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
++ L RY+ VLKG++ + +G V +VG +GSGK+TL+ L L P G
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 1274 ILIDGVDICSM 1284
+L +G + +
Sbjct: 62 VLFNGQSLSKL 72
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG-- 1271
G I + L++ Y N VL ++ G + ++G++G GKTTL+ A+ V+ AG
Sbjct: 4 GGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 1272 GSILIDGVDI 1281
G I I D+
Sbjct: 62 GRIAIADRDL 71
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292
+ G+ EG G +G G+GKTT I L L+ P G+ + G D+ K +R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK-VRRS 67
Query: 1293 LSIIPQEPTLFRG-SVRTNL 1311
+ I+PQ ++ + R NL
Sbjct: 68 IGIVPQYASVDEDLTGRENL 87
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISAL--FRLVEPAGGSILIDGVDICSMGLKDL 1289
+LKG+ T +G ++G GSGK+TL + E G IL G DI + +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDL-PPEE 73
Query: 1290 RVKLSII--PQEPTLFRG 1305
R +L I Q P G
Sbjct: 74 RARLGIFLAFQYPPEIPG 91
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 706 DHGDLTEIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNE 761
+ L + R ++ LSGG+ QR+ +A A+ DAD+Y FD+P S +D AA + E
Sbjct: 199 ERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRE 258
Query: 762 CVMAALEKKTVILVTH 777
A + K VI+V H
Sbjct: 259 ---LAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 1221 LKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG-- 1278
L RY+ + P VLKG+ FS G+VG G GK+TL L L+ P G++L G
Sbjct: 7 LWFRYQ-DEP-VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKP 64
Query: 1279 VDICSMGLKDLRVKLSIIPQEP 1300
+D GL LR +++ + Q+P
Sbjct: 65 LDYSKRGLLALRQQVATVFQDP 86
|
Length = 271 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 58/250 (23%), Positives = 100/250 (40%), Gaps = 42/250 (16%)
Query: 568 RINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIA 627
+ A LD + ++ + I R I+ LR +NL+IK +A
Sbjct: 365 KTFASELDIKGLPNEFQDILESFGVRQRVIER-----------YVLRNLNLEIKPGDVVA 413
Query: 628 VCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKA 687
V G GAGK++LL ILG SG + +
Sbjct: 414 VVGQSGAGKTTLLRMILGAQKGRGEEK------------YRPDSGKVEVPKNTVSALIPG 461
Query: 688 RYDKAIKACALDKDINNFDHGDLT---EIGQR-GLN-----------LSGGQKQRIQLAR 732
Y+ + + + + GDL EI R GL+ LS GQK+R +LA+
Sbjct: 462 EYEPEFGEVTILEHLRS-KTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAK 520
Query: 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSEV--DRIL 789
+ ++ L D+ + +D TA + + A E T+I+VTH+ E + + D ++
Sbjct: 521 LLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLI 580
Query: 790 VLEGGQITQS 799
++ G++ +
Sbjct: 581 LVGYGKVPVN 590
|
Length = 593 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 53/214 (24%), Positives = 87/214 (40%), Gaps = 43/214 (20%)
Query: 628 VCGSVG---AGKSSLLYAILGEIPKISGTVNLYGS-------------IAYVSQTSWIQS 671
V G +G +GKS+LL + P G + L +AY+ Q
Sbjct: 39 VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAE 98
Query: 672 G-SIRDNILYGK-----------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
G ++R+ + G+ D+ + ++AI L + R ++
Sbjct: 99 GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV------------GLKPLAHRLVD 146
Query: 720 -LSGGQKQRIQLARAVYNDADIYLFDDPFSAVD-AHTAATLFNECVMAALEKKTVILVTH 777
LSGG++QR +A V D+ L D+P SA+D AH L ++ TVI V H
Sbjct: 147 SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLH 206
Query: 778 QVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810
+ + D ++ L GG++ G EL+ T
Sbjct: 207 DINMAARYCDYLVALRGGEMIAQGTPAELMRGET 240
|
Length = 265 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 63/220 (28%), Positives = 95/220 (43%), Gaps = 43/220 (19%)
Query: 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWI-QSGSIRDNILYG 681
KI V G GAGKS+LL + G + +G + Y+ Q + + ++R+N+ G
Sbjct: 33 KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEG 92
Query: 682 -----KPMDK------------ARYDKAIKACA-LDKDINNFDHGDLT---EIGQRGL-- 718
+D+ A D + A L + I+ D DL EI L
Sbjct: 93 VAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC 152
Query: 719 --------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-- 768
LSGG+++R+ L R + + D+ L D+P + +DA + A L L+
Sbjct: 153 PPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ-----HLQEY 207
Query: 769 KKTVILVTHQVEFLSEVDR-ILVLEGGQ-ITQSGNYQELL 806
TV+ VTH FL V IL L+ G+ I GNY L
Sbjct: 208 PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWL 247
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 48/214 (22%), Positives = 91/214 (42%), Gaps = 31/214 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQS 671
L ++L + + + G GAGK++++ I G+ G+V G + + + ++
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 672 G--------------SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
G ++ +N+ P DK+ + A L + + L IG
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVF--ASLFFRLSAEEKDRIEEVLETIGLAD 135
Query: 718 L------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAV-DAHTAAT--LFNECVMAALE 768
LS GQKQ +++ + D + L D+P + + D T T L +A
Sbjct: 136 EADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS--LA--G 191
Query: 769 KKTVILVTHQVEFLSEV-DRILVLEGGQITQSGN 801
K +V++V H +EF+ + D++ VL G + G+
Sbjct: 192 KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE++ L ++ VL GI G V ++G +GSGKTTL+ + L +P G+I
Sbjct: 4 IEVKNLVKKFHGQT--VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61
Query: 1276 IDGVDI 1281
+ + I
Sbjct: 62 VGDITI 67
|
Length = 250 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 3e-05
Identities = 89/435 (20%), Positives = 155/435 (35%), Gaps = 98/435 (22%)
Query: 507 YWMSPTIISSVIFLGCALTGSAPLN----ASTIFTVLATLRSMGEPVRMIPEALSIMIQV 562
+W II S L+ P N S I +L L SM ++P M +
Sbjct: 299 FWYGTRIIIS------DLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSL 352
Query: 563 KVS---FDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLD 619
+ + ++ IN L NNDD +++ K + ++ + F +D + + +N
Sbjct: 353 EATNSLYEIINRKPLVE--NNDDGKKL---KDIKKIQFKNVRFHYDTRKDVEIYKDLNFT 407
Query: 620 IKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------------IAYVSQ 665
+ + A G G GKS++L I G + + S I VSQ
Sbjct: 408 LTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQ 467
Query: 666 TSWIQSGSIRDNILYG----------------------KPMDKARYDKAIKACALDKDIN 703
+ S SI++NI Y + +K +A A L+ N
Sbjct: 468 DPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527
Query: 704 NFDHGDLTE------------------------------------IGQRGLNLSGGQKQR 727
D +L E +G LSGGQKQR
Sbjct: 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQR 587
Query: 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV--MAALEKKTVILVTHQVEFLSEV 785
I +ARA+ + I + D+ S++D + + L + + + E + I++ H++ +
Sbjct: 588 ISIARAIIRNPKILILDEATSSLD-NKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYA 646
Query: 786 DRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNA----GQGGAEKVE 841
+ I VL + + + + T + N + +N G+ +E
Sbjct: 647 NTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIE 706
Query: 842 KG-RTARPEEPNGIY 855
+G A + NGIY
Sbjct: 707 QGTHDALMKNKNGIY 721
|
Length = 1466 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
+LKG+ G V +VG +GSGK+TL++ L L +P+ G + + G + + +D R
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLD-EDARA 83
Query: 1292 KL 1293
L
Sbjct: 84 AL 85
|
Length = 228 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 1216 IELRQLKIRYRPNAPL---VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I L + PL L G++ +EG V V+G G+GK+TL++A+ ++P G
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEP 1300
ILIDGVD+ + L+ + Q+P
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDP 89
|
Length = 263 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 25/93 (26%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVT 776
LSGG QR+ +A A+ + + D+P +A+D A + ++ L++K ++L+T
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIE--LLLELQQKENMALVLIT 211
Query: 777 HQVEFLSEV-DRILVLEGGQITQSGNYQELLLA 808
H + ++E +I+V+ GQ+ ++G ++ A
Sbjct: 212 HDLALVAEAAHKIIVMYAGQVVETGKAHDIFRA 244
|
Length = 326 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 36/226 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQTSWIQ 670
L V+L++K + + + G GAGKS+L+ +LG + G + G I YV Q ++
Sbjct: 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYL- 78
Query: 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDI----NNFDHGDLTEIGQRGLNLSGGQKQ 726
D L P+ R+ + ++ +DI G L + LSGG+ Q
Sbjct: 79 -----DTTL---PLTVNRFLR-LRPGTKKEDILPALKRVQAGHLID--APMQKLSGGETQ 127
Query: 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTHQVEF-L 782
R+ LARA+ N + + D+P VD + L++ ++ L ++ V++V+H + +
Sbjct: 128 RVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD--LIDQLRRELDCAVLMVSHDLHLVM 185
Query: 783 SEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGP 828
++ D +L L + +GT ++V+ H + I+ GP
Sbjct: 186 AKTDEVLCLN----------HHICCSGTP--EVVSLHPEFISMFGP 219
|
Length = 251 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
VLK I +G + + G TGSGKT+L+ + +EP+ G I G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK-CQLKTTISSLPNK 1341
++S Q + G+++ N+ G+ D+ +K++ K CQL+ I+ P K
Sbjct: 99 RISFSSQFSWIMPGTIKENI-IFGVSYDEYRYKSVVKACQLEEDITKFPEK 148
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 1239 TFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQ 1298
++G V ++G +G+GK+TL++ + +EPA GSI ++ GL + +S++ Q
Sbjct: 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSMLFQ 77
Query: 1299 EPTLFRG-SVRTNLDPLGL 1316
E LF +VR N+ LGL
Sbjct: 78 ENNLFAHLTVRQNIG-LGL 95
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-05
Identities = 74/398 (18%), Positives = 128/398 (32%), Gaps = 102/398 (25%)
Query: 993 RILTRLSSDL------SILDFDIPFSIVFVAASG----TELLAIIGIMTFVTWQVLVVAI 1042
R T + DL S++ I F+ + + SG T GI ++ W V++ AI
Sbjct: 159 RNFTETTLDLSFGLLQSVISL-ISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAI 217
Query: 1043 FAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETS--QGVVTIR------AF---- 1090
A + + R LIR+N E +V +R A
Sbjct: 218 SASLLTHLIGR-------PLIRLNFE------RQKLEADFRYSLVRVRENAEAIALYRGE 264
Query: 1091 ----NMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAA--LFLVLIP 1144
+D + ++ ++ I LT F V++P
Sbjct: 265 KVERRRLD---DRFDAVLGN-------WRRLVRAQI-------RLTWFQLGYGWLSVVLP 307
Query: 1145 RGYVAPGLVGLSLSYAFTLTGTQVFLS-----RWYCY----LANYIISVERIKQFMHIPP 1195
AP +++ + F W+ +A++ ++ R+ +F
Sbjct: 308 ILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQ--- 364
Query: 1196 EPPAIVEDKRPPSSWPF-----------KGRIELRQLKIRYRPNAPLVLKGITCTFSEGT 1244
A+ + I L L +R L L + G
Sbjct: 365 ---ALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTL-LSELNFEVRPGE 420
Query: 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILI-DGVDICSMGLKDLRVKLSIIPQEPTLF 1303
R+ + G +G+GKT+L+ AL L G I + + +PQ P L
Sbjct: 421 RLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALL------------FLPQRPYLP 468
Query: 1304 RGSVRTNL---DPLGLYSDDEIWKALEKCQLKTTISSL 1338
+G++R L + +SD E+ L K L L
Sbjct: 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL 506
|
Length = 604 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 14/143 (9%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL--VEPA-- 1270
RIE+ L + +LK + + + ++G +G GK+T I L R+ + P
Sbjct: 3 RIEVENLNTYFDDAH--ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 1271 -GGSILIDGVDIC--SMGLKDLRVKLSIIPQEPTLFRGSVRTN----LDPLGLYSDDEIW 1323
G I +DGVDI ++ + +LR K+ ++ Q+P F S+ N L G +D I
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 1324 KALEKCQLKTTI-SSLPNKLDSS 1345
+ +E+ + + +KLD S
Sbjct: 121 ERVEESLKAAALWDEVKDKLDKS 143
|
Length = 250 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 4e-05
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKG---ITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I+ ++ Y+PN+P + I +G+ ++G TGSGK+TL+ L L++P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 1273 SILIDGVDICSMG----LKDLRVKLSIIPQEP--TLFRGSV 1307
+ + + + S +K +R K+ ++ Q P LF +V
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETV 102
|
Length = 288 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILV 775
NLSGGQKQR+ +A + + I + D+ S +D + ++ L+KK TVI +
Sbjct: 143 NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK--LIRKLKKKNNLTVISI 200
Query: 776 THQVEFLSEVDRILVLEGGQITQSGNYQEL 805
TH ++ + D++LVL+ G++ G+ E+
Sbjct: 201 THDIDEANMADQVLVLDDGKLLAQGSPVEI 230
|
Length = 282 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-05
Identities = 67/291 (23%), Positives = 119/291 (40%), Gaps = 54/291 (18%)
Query: 555 ALSIMIQVKVSFDRINAFLLD---HELN----NDDVRRISLQKSDRSVKIQEGNFSWDPE 607
AL ++ +V+F+++N L E D + + L+ + + Q+ FS P
Sbjct: 285 ALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELR--NVTFAYQDNGFSVGP- 341
Query: 608 LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------I 660
+NL IK + + + G G+GKS+L + G SG + L G
Sbjct: 342 --------INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPE 393
Query: 661 AYVSQTSWIQSGSIRDNILY-------GKPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
Y S + + D L+ GKP + A +K ++ + + G ++ +
Sbjct: 394 DYRKLFSAVFT----DFHLFDQLLGPEGKPANPALVEKWLERLKM-AHKLELEDGRISNL 448
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTV 772
LS GQK+R+ L A+ + DI L D+ + D H + + E KT+
Sbjct: 449 -----KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTI 503
Query: 773 ILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAI 823
++H + DR+L + GQ+++ L G + A RDA+
Sbjct: 504 FAISHDDHYFIHADRLLEMRNGQLSE--------LTGEERDA---ASRDAV 543
|
Length = 547 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 48/211 (22%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLY--------- 657
IP L+ + +K + + V G G+G S+LL A+ + G + Y
Sbjct: 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI-HYNGIPYKEFA 78
Query: 658 ----GSIAYVSQTSW-IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
G I YVS+ + ++R+ + D A++ N F G
Sbjct: 79 EKYPGEIIYVSEEDVHFPTLTVRETL-----------DFALRCKG-----NEFVRG---- 118
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC-VMAALEKKT 771
+SGG+++R+ +A A+ + A + +D+ +D+ TA + MA + K T
Sbjct: 119 -------ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 772 VILVTHQ--VEFLSEVDRILVLEGGQITQSG 800
+ +Q E D++LVL G+ G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 5e-05
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
E+R L R+ + ++ G VG++G G+GKTTL + + +P+ G+++
Sbjct: 6 EVRGLSKRF--GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIF 63
Query: 1277 DGVDI 1281
G DI
Sbjct: 64 RGRDI 68
|
Length = 250 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE------PAGGSILIDGVDICSMG 1285
+LK IT + G++G +GSGK+TL+ L RL+E G +L G DI +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 1286 LKDLRVKLSIIPQEPTLF-RGSVRTNLD-PL---GLYSDDEIWKALEKCQLKTTI-SSLP 1339
LR ++ ++ Q+P F S+ N+ PL G+ EI K +E+C K + +
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 1340 NKLDSSGKLFSAA 1352
++L+S S
Sbjct: 145 DRLNSPASQLSGG 157
|
Length = 257 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 34/228 (14%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
P L+G+NLD + + G+ G GKS+L + G + G V G S+ +
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLL- 73
Query: 671 SGSIRDNI--LYGKPMDKARYDKAIKACALDKDINNFDHGDL----TEIGQR---GLNL- 720
++R + ++ P ++ I +D DI F +L EI +R L L
Sbjct: 74 --ALRQQVATVFQDP------EQQIFYTDIDSDIA-FSLRNLGVPEAEITRRVDEALTLV 124
Query: 721 -------------SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
S GQK+R+ +A A+ A L D+P + +D +
Sbjct: 125 DAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA 184
Query: 768 EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTAFEQ 814
+ VI+ +H ++ + E+ D + VL GQI G E+ A EQ
Sbjct: 185 QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQ 232
|
Length = 271 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 5e-05
Identities = 49/215 (22%), Positives = 84/215 (39%), Gaps = 29/215 (13%)
Query: 617 NLDIKWAQKIAVC--GSVGAGKSSLL------------------YAILGEIPKISGTVNL 656
N + + + C G+ G+GKS+++ YAI + KI L
Sbjct: 29 NTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRL 88
Query: 657 YGSIAYVSQTSWIQ--SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714
I V Q Q +I +I +G +A K + +
Sbjct: 89 RKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE----DYV 144
Query: 715 QRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTV 772
+R LSGGQK+R+ LA + D + + D+P +D N + KK +
Sbjct: 145 KRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRI 204
Query: 773 ILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
I+VTH + + L D ++V+ G++ G+ E+
Sbjct: 205 IMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239
|
Length = 289 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDAD--IYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
+GQ+ LSGG+ QR++LA ++++ +++ D+P + + L
Sbjct: 81 LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGN 140
Query: 771 TVILVTHQVEFLSEVDRILVL------EGGQITQSG 800
TVIL+ H ++ LS D I+ GG++ SG
Sbjct: 141 TVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+++ L ++ LK ++ G ++G TGSGK+ L+ + ++P G IL
Sbjct: 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKIL 57
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
++G DI L + +S +PQ LF
Sbjct: 58 LNGKDI--TNLPPEKRDISYVPQNYALF 83
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+ + R+ L I+ + +G G++G G+GKTT I + ++ P G +L
Sbjct: 1 LEVENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 1276 IDG 1278
DG
Sbjct: 59 FDG 61
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD--- 1288
+L + T +G ++G +GSGK+TL++ + L + G + ++G + + K
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 1289 -LRVKLSIIPQEPTLFRG-SVRTNLDPLGL 1316
R KL + Q L +V NLD LGL
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLD-LGL 101
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-05
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMAALEKKTVILV 775
LSGG+ QR+ +A A+ DAD Y FD+P S +D AA L E A + V++V
Sbjct: 139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL---AEDDNYVLVV 195
Query: 776 THQ---VEFLSEVDRILVLEG 793
H +++LS D I L G
Sbjct: 196 EHDLAVLDYLS--DYIHCLYG 214
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 7e-05
Identities = 29/107 (27%), Positives = 58/107 (54%), Gaps = 8/107 (7%)
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
DH D + L+ G+ Q++ +A A+ N + + D+P +A++ T A +F ++
Sbjct: 147 DHKDA--MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFR--LLT 202
Query: 766 ALEKK---TVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808
L + T++L++H ++ LS+ D+I VL GQ ++ +EL+
Sbjct: 203 RLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTT 249
|
Length = 330 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 7e-05
Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 60/230 (26%)
Query: 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYG 681
QK+ + G G GKS+LL + EI G+ G +A+V+Q + + ++
Sbjct: 28 QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVI-- 85
Query: 682 KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ-----------------RGL------ 718
D R + ++A D + N H T G+ GL
Sbjct: 86 ---DGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQ 142
Query: 719 ------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--- 769
+ SGG + R+ LA+A+ +D+ L D+P + +D A ++ LEK
Sbjct: 143 LERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLD--AVIW-------LEKWLK 193
Query: 770 ---KTVILVTHQVEFLSE-VDRILVLEGGQITQ-SGNYQELLLAGTAFEQ 814
T+IL++H +FL VD+I+ +E + + +GNY ++FE
Sbjct: 194 SYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNY-------SSFEV 236
|
Length = 638 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 8e-05
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG----LKDLRVKLSIIPQEP 1300
+ GR+GSGKTTLI + L P G I+++G + L + ++ + QE
Sbjct: 25 VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEA 84
Query: 1301 TLF-RGSVRTNL 1311
LF SVR NL
Sbjct: 85 RLFPHLSVRGNL 96
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 8e-05
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 18/110 (16%)
Query: 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL-----VE 1268
+ +R L + + +KGI+ G + +VG +GSGK+ ++ L
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA 66
Query: 1269 PAGGSILIDGVDICSMGLKDLRV----KLSIIPQEPTLFRGSVRTNLDPL 1314
GSIL DG D+ + + LR K+ +I QEP T+L+PL
Sbjct: 67 HPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPM-------TSLNPL 109
|
Length = 534 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 49/218 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-SIAYVSQTSW-- 668
L V+L +K + +A+ G G GKS+L ++G E P G V+ G +A +++
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS-QGNVSWRGEPLAKLNRAQRKA 86
Query: 669 ----IQ------------SGSIRDNILYGKPM------DKA----RYDKAIKACALDKDI 702
IQ ++R+ I +P+ DKA R + ++A LD +
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLDDSV 144
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ +R LSGGQ QR+ LARA+ + + + D+ S +D A +
Sbjct: 145 ----------LDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR-- 192
Query: 763 VMAALEKKT---VILVTHQVEFLSE-VDRILVLEGGQI 796
++ L+++ + +TH + + R++V++ GQI
Sbjct: 193 LLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 9e-05
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL 1289
L ++ G GV+G +G+GK+TLI + L P GS+++DG D+ ++ +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSEL 77
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 9e-05
Identities = 27/93 (29%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKT---VILVT 776
LSGG +QR+ +A A+ + + D+P +A+D A + ++ L+K+ VI +T
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ--LIKVLQKEMSMGVIFIT 226
Query: 777 HQVEFLSEV-DRILVLEGGQITQSGNYQELLLA 808
H + ++E+ DR+LV+ G+ ++G+ +++ A
Sbjct: 227 HDMGVVAEIADRVLVMYQGEAVETGSVEQIFHA 259
|
Length = 623 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 9e-05
Identities = 24/89 (26%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTHQ 778
L+ G+ Q++ +A A+ N + + D+P ++++ T A +F + T++L++H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218
Query: 779 VEFLSE-VDRILVLEGGQITQSGNYQELL 806
++ +S+ D+I VL GQ +S +EL+
Sbjct: 219 LQMISQWADKINVLYCGQTVESAPSEELV 247
|
Length = 330 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
L + G+ V ++G +GSGK+TL+ + L +P G I ++G D + +D
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDR-- 72
Query: 1292 KLSIIPQEPTLFRG-SVRTN-------LDPLGLYSDDEIWKALEKCQLKTTISSLPNKLD 1343
K+ + Q LF+ +VR N + + LE QL+ PN+L
Sbjct: 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQL- 131
Query: 1344 SSGKLFSAAL 1353
S G+ AL
Sbjct: 132 SGGQRQRVAL 141
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
+E+R + R+ P V ++ + +G ++G G+GK+TL+ LF L +P G
Sbjct: 5 LEMRGITKRF----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 1274 ILIDGVDICSMGLKD-LRVKLSIIPQEPTLF 1303
I +DG ++ +D +R+ + ++ Q L
Sbjct: 61 IRVDGKEVRIKSPRDAIRLGIGMVHQHFMLV 91
|
Length = 501 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 25/89 (28%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQ 778
LS G++ R+ LA+ + + I + D+P +D T + + + A E ++T I+V+H
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487
Query: 779 VEFLSEV-DRILVLEGGQITQSGNYQELL 806
++F+ +V DR ++ G+I + G+ +E++
Sbjct: 488 MDFVLDVCDRAALMRDGKIVKIGDPEEIV 516
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM---GLKD 1288
VL ++ + EG VG++GR+G GK+TL L L +PA G++ G D+ + +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 1289 LRVKLSIIPQE 1299
R + ++ Q+
Sbjct: 86 FRRDVQLVFQD 96
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LR 1290
V++ ++ T + G VG++G G+GKTT + +V G+I+ID DI + L R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 1291 VKLSIIPQEPTLFRG-SVRTNL 1311
+ +PQE ++FR SV NL
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNL 99
|
Length = 241 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 61/207 (29%), Positives = 88/207 (42%), Gaps = 57/207 (27%)
Query: 626 IAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---IAYVSQ---------TSW--IQS 671
+ V G GAGKS+L I G+ SGT+ + G +AYV Q T W I
Sbjct: 351 VGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GETVKLAYVDQSRDALDPNKTVWEEISG 409
Query: 672 GSIRDNILYGKPMDKAR-YDKAIKACALDKDINNFDHGDLTE-IGQRGLNLSGGQKQRIQ 729
G D I GK +R Y NF D + +GQ LSGG++ R+
Sbjct: 410 GL--DIIQLGKREVPSRAYVGRF----------NFKGSDQQKKVGQ----LSGGERNRVH 453
Query: 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK------TVILVTHQVEFLS 783
LA+ + + ++ L D+P + +D T + ALE+ ++++H FL
Sbjct: 454 LAKTLKSGGNVLLLDEPTNDLDVET---------LRALEEALLEFAGCAVVISHDRWFL- 503
Query: 784 EVDR----ILVLEG-GQITQ-SGNYQE 804
DR IL EG + GNY E
Sbjct: 504 --DRIATHILAFEGDSHVEWFEGNYSE 528
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 22/83 (26%)
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---T 754
LD+DI+ LSGG+ QR+ +A A+ DAD Y FD+P S +D
Sbjct: 206 LDRDISE---------------LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLN 250
Query: 755 AATLFNECVMAALEKKTVILVTH 777
A L E E K V++V H
Sbjct: 251 VARLIRE----LAEGKYVLVVEH 269
|
Length = 590 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMAALEKKTVILV 775
+LSGG+ QR+ +A + DAD+YL D+P + +D A +A + T ++V
Sbjct: 453 DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR--IAEEREATALVV 510
Query: 776 THQVEFLSEV-DRILVLEG 793
H + + + DR++V EG
Sbjct: 511 DHDIYMIDYISDRLMVFEG 529
|
Length = 590 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 2e-04
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 1229 APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDI 1281
++ ++ G VG+ G G+G+T L ALF L PA G I +DG +
Sbjct: 12 VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPV 64
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + + + P VL I +G V ++G +GSGK+TL+ + +L E G ++
Sbjct: 2 IEFKNVSKHFGPTQ--VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQE 1299
+DG+ + D +V +I QE
Sbjct: 60 VDGLKV-----NDPKVDERLIRQE 78
|
Length = 240 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 1231 LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDI 1281
++ G++ T + G + + G GSGKTTL+ + L+ PA G+I +DG DI
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI 66
|
Length = 207 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL-----VEP 1269
++E R L Y L I+ F + ++G +G GK+T + L R+
Sbjct: 6 KMEARGLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR 63
Query: 1270 AGGSILIDGVDICSMGLK--DLRVKLSIIPQEPTLFRGSVRTNL 1311
G IL+DG +I + +LR ++ ++ Q+P F S+ N+
Sbjct: 64 VEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENV 107
|
Length = 253 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278
+ ++ T + G + + G G+GKTTL+ L L+ P G + G
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQG 63
|
Length = 209 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL--VEPAG- 1271
+++L QL + + N +K ++ F E + ++G +G GK+T++ ++ R+ + P+
Sbjct: 4 KVKLEQLNVHFGKNH--AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 1272 --GSILIDGVDICSMGLK--DLRVKLSIIPQEPTLF 1303
G IL+D DI G+ +R ++ ++ Q+P F
Sbjct: 62 VTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF 97
|
Length = 252 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278
+K ++ T EG + ++G GSGK+TL L ++EP G ILI+
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILIND 74
|
Length = 267 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
+L ++ TF G G++G GSGK+TL+ L R P+ G IL+D + S K
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 1292 KLSIIPQE 1299
K++ +PQ+
Sbjct: 86 KVAYLPQQ 93
|
Length = 265 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 54/232 (23%), Positives = 105/232 (45%), Gaps = 41/232 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQS 671
L ++ D + Q A+ G GAGKS+LL + G +G++ + G + + S T+ + +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 672 G--------------SIRDNILYGKPMDKARY--DKAIKACALDKDINNFDHGDLTEIG- 714
G ++ +N+ G+ K + + A ++ L +G
Sbjct: 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQ---------LEHLGV 130
Query: 715 -----QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-- 767
LS GQ+Q +++A+A+ +A + FD+P S++ A LF V+ L
Sbjct: 131 DIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR--VIRELRA 188
Query: 768 EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
E + ++ V+H++E + + D I V + G+ + + +A +QLV A
Sbjct: 189 EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD----MAQVDRDQLVQA 236
|
Length = 501 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 31/211 (14%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--KISGTVNLYGS-------- 659
+ L G++L+++ + + +CG GAGKS+L+ + G P G + GS
Sbjct: 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIR 73
Query: 660 ------IAYVSQT-SWIQSGSIRDNILYGK----PMDKARYDKAIKAC-ALDKDINNFDH 707
I + Q + + S+ +NI G P + Y+ L +++
Sbjct: 74 DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDAD 133
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
+G G GGQ+Q +++A+A+ A + + D+P S++ L + ++ L
Sbjct: 134 NVTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLD--IIRDL 187
Query: 768 EKKTV--ILVTHQVEFLSEV-DRILVLEGGQ 795
+ V + ++H++ + V D I V+ GQ
Sbjct: 188 KAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 51/183 (27%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT--VNLYGS-------- 659
+P L+ V+L + + +A+ G GAGKS+LL ++ SG V G+
Sbjct: 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80
Query: 660 -----------IAYVSQ---------TSWIQSGSIRDNILYGKPMDKARYDKAIKACALD 699
I YVSQ + + + + G P + AR +A L
Sbjct: 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAAR----ARARELL 133
Query: 700 KDINNFDHGDLTEIGQRGLNL-----SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754
+N I +R +L SGG++QR+ +AR D I L D+P +++DA
Sbjct: 134 ARLN---------IPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAAN 184
Query: 755 AAT 757
Sbjct: 185 RQV 187
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E + L R+ + I+ T + + G++G G+GK+TL+ + ++ P G I+
Sbjct: 1 LETKNLSKRFGKQT--AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDP----LGLYSDDEIWKALEKCQL 1331
DG KDL S+I P + R NL LGL D I + L L
Sbjct: 59 FDGHP---WTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGL-PDSRIDEVLNIVDL 114
Query: 1332 KTT 1334
T
Sbjct: 115 TNT 117
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFR---LVEP 1269
G+I ++ L + Y LK I E ++G +G GK+T + L R L+
Sbjct: 1 MGKISVKDLDLFYGDFQ--ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58
Query: 1270 A--GGSILIDGVDI--CSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
G +L+DG DI + + LR ++ ++ Q+P F S+ N+
Sbjct: 59 VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNV 104
|
Length = 250 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL 1289
VLKGI+ G V +VG +GSGK+TL++ L L +P G+ + G D+ ++ L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80
|
Length = 648 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 3e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 1225 YRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM 1284
+ P+ + + TF E +G G+GKTT +S L L+ P G++L+ G DI
Sbjct: 938 FEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ET 996
Query: 1285 GLKDLRVKLSIIPQEPTLF 1303
L +R L + PQ LF
Sbjct: 997 NLDAVRQSLGMCPQHNILF 1015
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 720 LSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
LSGG+K+ LA + +Y+ D+ +D L + ++ VI++
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 776 THQVEFLSEVDRIL 789
TH E D+++
Sbjct: 138 THLPELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 25/205 (12%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI 669
I L V+L I + + + G+ GAGK++LL + G+ SG + G QT+ I
Sbjct: 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI 77
Query: 670 QSGSI---------------RDNILYGKPM-DKARYDKAIKAC-ALDKDINNFDHGDLTE 712
++ +N+ G ++ ++ + IK L ++
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRI----- 132
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV 772
QR +SGG++Q + + RA+ + + L D+P + +F+ + T+
Sbjct: 133 --QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTI 190
Query: 773 ILVTHQV-EFLSEVDRILVLEGGQI 796
LV + L DR VLE G +
Sbjct: 191 FLVEQNANQALKLADRGYVLENGHV 215
|
Length = 237 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS- 1273
+I++R + Y + VLK I F E ++G +G GK+TL+ AL R+ + G+
Sbjct: 4 KIKIRGVNFFYHKHQ--VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 1274 ----ILIDGVDICSMGLK--DLRVKLSIIPQEPTLFRGSVRTNL 1311
+L+D +I S L +LR ++ ++ Q+P F S+ N+
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNV 105
|
Length = 251 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 60/247 (24%), Positives = 106/247 (42%), Gaps = 47/247 (19%)
Query: 607 ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYGSIAY 662
+ A P + GV+L ++ + +A+ G G+GKS A LG +P + +G V L G
Sbjct: 13 QAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVA 72
Query: 663 VSQTSWIQSGSIRDN-------------------ILYGKPMDKARYDKAIKACALDKDIN 703
+ +I N + GKP D A A++A L+
Sbjct: 73 PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA-- 130
Query: 704 NFDHGDLTEIGQRGLNL-----SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
R L L SGG QR+ +A A+ +A + D+P + +D A +
Sbjct: 131 -----------ARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARI 179
Query: 759 FNECVMAALEKKT--VILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLA--GTAFE 813
+ + + ++K+ ++LVTH + ++ + D + V+ G+I + G+ + L A
Sbjct: 180 L-DLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTR 238
Query: 814 QLVNAHR 820
LV+AH
Sbjct: 239 SLVSAHL 245
|
Length = 254 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 4e-04
Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 51/221 (23%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668
+ L V+L ++ + +++CG GAGKS+L+ + G P GT G I + +
Sbjct: 17 GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP--HGTYE--GEIIFEGEE-- 70
Query: 669 IQSGSIRD-----------------------NILYG-KPMDKAR--YDKAIKACA----- 697
+Q+ +IRD NI G + YD
Sbjct: 71 LQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQ 130
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
L DIN NL GQ+Q +++A+A+ A + + D+P +++ A
Sbjct: 131 LKLDIN---------PATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAV 181
Query: 758 LFNECVMAALEKKTV--ILVTHQVEFLSEV-DRILVLEGGQ 795
L + ++ L+ + I ++H++ + + D I V+ G+
Sbjct: 182 LLD--IIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+EL + R+ L + ++G V ++G +G GKTT + + L EP G I
Sbjct: 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 1276 IDGVDICSMGLKD 1288
I G D+ + KD
Sbjct: 59 IGGRDVTDLPPKD 71
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 5e-04
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 1213 KGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL 1266
KG+IE+ + RY RPN P + K +T + +VG TGSGK+T++S L R
Sbjct: 1163 KGKIEIMDVNFRYISRPNVP-IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRF 1217
|
Length = 1466 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 1239 TFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDI 1281
+ SE +G++G G GKTT I L +++P G I I+ +
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV 63
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 5e-04
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG--VDICSMG-LKDLRVKLSIIPQE 1299
G + +VG +GSGK+T AL RLVE GG I+ +G +D S G L+ LR + I Q+
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 1300 P 1300
P
Sbjct: 410 P 410
|
Length = 623 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 59/236 (25%), Positives = 89/236 (37%), Gaps = 63/236 (26%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--------KISGTVNLYGSI---- 660
LR ++L I+ + A+ G GAGKS+LL A+ G++ +++G V L G
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76
Query: 661 ---------AYVSQTSWIQSG---SIRDNILYGK-PMDK-----ARYDKAIKACALDK-D 701
A + Q + Q S R+ +L G+ P + D I AL
Sbjct: 77 DAPRLARLRAVLPQAA--QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG 134
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN---------DADIYLFDDPFSAVD- 751
D+T LSGG+ R+Q AR + L D+P +A+D
Sbjct: 135 ATALVGRDVT-------TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDL 187
Query: 752 AH------TAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800
AH T L + + L + H + DRI +L G I G
Sbjct: 188 AHQHRLLDTVRRLARDWNLGVLA------IVHDPNLAARHADRIAMLADGAIVAHG 237
|
Length = 272 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 1216 IELRQLKIRYRPNAPL-------VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268
+E+R L +R +K ++ T EG + ++G GSGK+TL L ++E
Sbjct: 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 1269 PAGGSILIDG 1278
P G +LID
Sbjct: 65 PTSGELLIDD 74
|
Length = 267 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+ L RY L ++ T G V ++G G+GK+TL S L RL G I
Sbjct: 2 LEVAGLSFRYGARR--ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQIS 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTL-FRGSVRTNL 1311
+ G D+ L +L ++ Q+PTL SVR NL
Sbjct: 60 VAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNL 95
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-04
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 1182 ISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFS 1241
++ ++ + P + + W +ELR + Y + + I T
Sbjct: 294 VAFNKLNKLALAPYKAE--FPRPQAFPDWQ---TLELRNVTFAY-QDNGFSVGPINLTIK 347
Query: 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
G + ++G GSGK+TL L L +P G IL+DG + + +D R S +
Sbjct: 348 RGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAV 402
|
Length = 547 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 6e-04
Identities = 56/230 (24%), Positives = 92/230 (40%), Gaps = 59/230 (25%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV----------NLYG-SIA 661
R V+ D+ + + + G G+GK++LL A+ + +G V +LY S A
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 662 ---YVSQTSWIQSGSIRDNILYGKPMD--------------KARYDKAIKACALD----K 700
+ +T W G + + G M AR+ I+A A D
Sbjct: 82 ERRRLLRTEW---GFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERV 138
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA---- 756
+I D I SGG +QR+Q+AR + + D+P +D A
Sbjct: 139 EI------DAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLD 192
Query: 757 ---TLFNECVMAALEKKTVILVTHQ---VEFLSEVDRILVLEGGQITQSG 800
L E +A V++VTH L+ R+LV++ G++ +SG
Sbjct: 193 LLRGLVRELGLA------VVIVTHDLAVARLLA--HRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 7e-04
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+R + R+ + L ++ G V ++G +GSGKTTL+ + L P G+IL
Sbjct: 3 IEVRNVSKRF-GDFV-ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304
G D + +++ V + Q LFR
Sbjct: 61 FGGEDATDVPVQERNVGF--VFQHYALFR 87
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-04
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 1216 IELRQLKIRYRPNAPL---VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I L+ + Y+ P L + T +G+ +G TGSGK+T++ L L P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1273 SILIDGVDICSMG----LKDLRVKLSIIPQ--EPTLFRGSV 1307
S+ +D I S +K +R K+ ++ Q E LF +V
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETV 103
|
Length = 280 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 8e-04
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE--PAG---GSILIDGVDICSMGLK 1287
LKGI+ E + V +G +G GK+T + R+ + PA G I IDG +I G++
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 1288 --DLRVKLSIIPQEPTLFRGSVRTNL 1311
+LR + ++ Q P F S+ N+
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENV 104
|
Length = 250 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 9e-04
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISAL--FRLVEPAGGSILIDGVDICSM 1284
+LKG+ T EG ++G GSGK+TL + E G IL DG DI +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILEL 73
|
Length = 251 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 9e-04
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS---MGLKDL 1289
L G++ T G + VVG +G GK+TL L + P GG + G D+ K L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 1290 RVKLSIIPQEP 1300
R K+ I+ Q P
Sbjct: 91 RQKIQIVFQNP 101
|
Length = 327 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IEL + Y + L G++ EG ++G +G GKTTL+ + P G IL
Sbjct: 1 IELENVSKFY--GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 1276 IDGVDI 1281
+DG DI
Sbjct: 59 LDGKDI 64
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 1224 RYRPNAPLVLKGITCTFSE-------------GTRVGVVGRTGSGKTTLISALFRLVEPA 1270
R PL+L ++ + E G V VVGR+G GK+TL+ L L P+
Sbjct: 6 RLNQGTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS 65
Query: 1271 GGSIL 1275
G +L
Sbjct: 66 AGELL 70
|
Length = 257 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.001
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 1216 IELRQLKIRYRPNAPL-VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
+E+ L +Y + + L G++ + ++G V ++G+ GSGK+T + L E G +
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEP 1300
IDG + + + +LR K+ ++ Q P
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNP 90
|
Length = 277 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I+ R ++ RY LV+ G++ G G++G G+GKTT + L L P GSI
Sbjct: 8 IDFRNVEKRY--GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTL---FRGSVRTNLDPLGLY 1317
+ G + S + R ++ ++PQ L F +VR NL G Y
Sbjct: 66 LCGEPVPSRA-RHARQRVGVVPQFDNLDPDF--TVRENLLVFGRY 107
|
Length = 306 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDI 1281
VL ++ + G V ++GR+G GK+TL L L P+ G++ G +
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPL 76
|
Length = 268 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI----DGVDIC 1282
VLK ++ T + G V + G +G+GK+TL+ +L+ P G IL+ VD+
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLA 77
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
SGGQ+QRI +ARA+ D D+ + D+P SA+D A + N
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLN 195
|
Length = 327 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
R+ QL + Y V + +T +G ++G G GK+TL+ L RL+ PA G +
Sbjct: 7 RLRGEQLTLGY--GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV 64
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEPT 1301
+DG I K++ ++ ++ Q T
Sbjct: 65 WLDGEHIQHYASKEVARRIGLLAQNAT 91
|
Length = 265 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 48/214 (22%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE---------IPKISGTVNLYG-- 658
+P LR V+L + + + + G G+GKS+LL ++ + V+L
Sbjct: 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83
Query: 659 ----------SIAYVSQ-TSWIQSGSIRDNIL-----YGKPMDKARYDKAIKACALDKDI 702
+I YVSQ I S D + G P + AR KA L +
Sbjct: 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVAR----AKAADLLTRL 139
Query: 703 NNFDHGDLTEIGQRGLNL-----SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
N + +R +L SGG++QR+ +AR D I L D+P +++DA A
Sbjct: 140 N---------LPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAV 190
Query: 758 LFNECVMAALEKKTVIL-VTHQVEFLSEV-DRIL 789
+ E + A + ++ + H E V DR+L
Sbjct: 191 VV-ELIREAKARGAALVGIFHDEEVREAVADRLL 223
|
Length = 235 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.001
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 22/170 (12%)
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYGS------IAYVSQTSWI--QSG-----SIRD 676
GS GAGK++LL I G + G + Y Q ++ +SG ++R+
Sbjct: 34 GSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRE 93
Query: 677 NILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736
N LY A + + F L + GL LS GQK+++ L R +
Sbjct: 94 NCLYDIHFSPG-------AVGITELCRLFSLEHLIDY-PCGL-LSSGQKRQVALLRLWMS 144
Query: 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVD 786
A ++L D+P A+D + T+ + + V+L +HQ L++ D
Sbjct: 145 KAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKAD 194
|
Length = 200 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV---DIC-SMGLKDLRVKLSIIP 1297
G+ G +G+GK+TL+ + L +P GG+I+++G D + L + K+ ++
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 1298 QEPTLF-RGSVRTNL 1311
Q+ LF +VR NL
Sbjct: 82 QQYALFPHLNVRENL 96
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 1231 LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG---GSILIDG 1278
+L ++ G + ++G +GSGKTTL+ A+ VE G G IL +G
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG 71
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MG 1285
LKGI F++ ++G +G GK+T + L R+ + G++ + G +I +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 1286 LKDLRVKLSIIPQEPTLFRGSVRTNL 1311
+ LR ++ ++ Q+P F S+ N+
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENV 106
|
Length = 252 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 21/63 (33%), Positives = 41/63 (65%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
VLKG++ + G + ++G +GSGK+T + + L +P+ GSI+++G I + KD ++
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 1292 KLS 1294
K++
Sbjct: 80 KVA 82
|
Length = 257 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL---VEPA--GGSILIDGVDICS--MG 1285
+KGI F + ++G +GSGK+T + +L R+ ++ A G IL G+DI +
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 1286 LKDLRVKLSIIPQEPTLFRGSVRTNL 1311
+ ++R + ++ Q P F S+ N+
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENI 121
|
Length = 267 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 14/103 (13%)
Query: 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL 782
G K R+ LA+A++++ DI L D+P + +D +T L E V+ T+I+++H FL
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWL--EDVLNE-RNSTMIIISHDRHFL 215
Query: 783 SEV-----DRILVLEGGQIT-QSGNYQELLLAGT-AFEQLVNA 818
+ V D L+ G++ GNY E + A T A E+L+
Sbjct: 216 NSVCTHMAD----LDYGELRVYPGNYDEYMTAATQARERLLAD 254
|
Length = 530 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.002
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302
G + +VG GSGKTTL AL R + P GG ++ + + D + + + ++ +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASG 61
Query: 1303 FRGSVRTNLDPLGLYSD------DEIWKALEK 1328
L DEI L+
Sbjct: 62 SGELRLRLALALARKLKPDVLILDEITSLLDA 93
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 38/198 (19%)
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQSG---------------- 672
G VGAG+S L+ + G + +G V L G I S I++G
Sbjct: 286 GLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345
Query: 673 -SIRDNILYGKPMDKARYDKAIKACALD--KDINNFDH--GDLT----EIGQRGLNLSGG 723
S+ DNI AR C ++ + N D L Q +NLSGG
Sbjct: 346 HSVADNINIS-----ARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGG 400
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
+Q+ L R + D + L D+P +D ++N A + V+ V+ L
Sbjct: 401 NQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSD---LP 457
Query: 784 EV----DRILVLEGGQIT 797
EV DRI+V+ G+I
Sbjct: 458 EVLGVADRIVVMREGRIA 475
|
Length = 501 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 33/221 (14%)
Query: 604 WDP-ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-KISGTVNLYG-SI 660
WD + V+ ++ + + V G VGAG++ L+ A+ G P K G V + G +
Sbjct: 266 WDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV 325
Query: 661 AYVSQTSWIQSGSI-------RDNIL----YGKPMD---------KARYDKAIKACALDK 700
+ I++G R I+ GK + K R D A + +
Sbjct: 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGS 385
Query: 701 DINNFD----HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA 756
I L IG+ LSGG +Q+ LA+ + + + + D+P VD
Sbjct: 386 AIQRLKVKTASPFLP-IGR----LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKY 440
Query: 757 TLFNECVMAALEKKTVILVTHQV-EFLSEVDRILVLEGGQI 796
++ A E +I+V+ ++ E L DR+LV+ G++
Sbjct: 441 EIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS-MGLKDLR 1290
L ++ ++G V ++G G+GKTTL+ L G I+ DG DI K +R
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 1291 VKLSIIPQEPTLF-RGSVRTNLDPLGLYSDDEIWK 1324
++I+P+ +F R +V NL G +++ + ++
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQ 114
|
Length = 237 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 23/210 (10%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWI 669
L VNL I+ A G G+GKS+++ + G G+V + I S+ I
Sbjct: 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80
Query: 670 QSGSIRDNILYGKPMDKARYDKAIKACAL--------DKDINNFDHGDLTEIG------- 714
+ + +++ P + + +K A ++ L +G
Sbjct: 81 KQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFE 140
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA---HTAATLFNECVMAALEKKT 771
+ LSGGQ +R+ +A + + I + D+P + +D TLF + + + T
Sbjct: 141 KNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGM---T 197
Query: 772 VILVTHQVEFLSE-VDRILVLEGGQITQSG 800
++LVTH ++ ++ D + VLE G++ SG
Sbjct: 198 IVLVTHLMDDVANYADFVYVLEKGKLVLSG 227
|
Length = 280 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-- 1289
V+K I+ T G +G+VG +GSGK+T AL RL+ + G I DG + ++ + L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359
Query: 1290 -RVKLSIIPQEP 1300
R ++ ++ Q+P
Sbjct: 360 VRHRIQVVFQDP 371
|
Length = 529 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------- 659
P ++ + + + V G GAGK++LL + G + SG + + G
Sbjct: 23 EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSR 82
Query: 660 -IAYVSQTSWI-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
+AY+ + S +N+ + + R K + AL + + D T + Q
Sbjct: 83 FMAYLGHLPGLKADLSTLENLHFLCGL-HGRRAKQMPGSAL-AIVGLAGYED-TLVRQ-- 137
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVT 776
LS GQK+R+ LAR + A ++L D+P++ +D TL N + A L LVT
Sbjct: 138 --LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE-GITLVNRMISAHLRGGGAALVT 193
|
Length = 214 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 38/228 (16%)
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650
SD + +IQE L GV + +AV G G+GKS+LL A+ G I
Sbjct: 72 SDETRQIQERTI----------LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN 121
Query: 651 SGTVNLYGSIAYVSQTSWIQSGSI-RDNILYGK---------------PMDKARYDKAIK 694
+ T + + ++ ++G + +D+ILY P + +K +
Sbjct: 122 NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILV 181
Query: 695 ACALDKDINNFDHGDLTEIGQ---RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751
A ++ ++ + T IG RG+ SGG+++R+ +A + + + + D+P S +D
Sbjct: 182 AESVISELGLTKCEN-TIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
Query: 752 AHTAATLFNECVMAALEKKTVILVTHQVEFLSEV----DRILVLEGGQ 795
A A L A + KT++ HQ S V D +LVL G+
Sbjct: 239 ATAAYRLVLTLGSLAQKGKTIVTSMHQPS--SRVYQMFDSVLVLSEGR 284
|
Length = 659 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 0.002
Identities = 58/225 (25%), Positives = 86/225 (38%), Gaps = 61/225 (27%)
Query: 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNL---YGSIAYVSQ--------TSW--IQS 671
KI V G GAGKS+LL + G + G + Y+ Q T ++
Sbjct: 35 KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGI-KVGYLPQEPQLDPEKTVRENVEE 93
Query: 672 G--SIRD--------NILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR----- 716
G ++ Y +P +D ++I D D ++ +
Sbjct: 94 GVAEVKAALDRFNEIYAAYAEPDAD--FDALAAEQGELQEI--IDAADAWDLDSQLEIAM 149
Query: 717 -GL----------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
L LSGG+++R+ L R + D+ L D+P + +DA E V A
Sbjct: 150 DALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDA--------ESV-A 200
Query: 766 ALE------KKTVILVTHQVEFLSEV-DRILVLEGGQ-ITQSGNY 802
LE TV+ VTH FL V IL L+ G+ I GNY
Sbjct: 201 WLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNY 245
|
Length = 556 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 1223 IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDI 1281
IR R A LK I+ + +G V ++G +G GKTTL+ + L G+I G DI
Sbjct: 10 IRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI 68
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 1186 RIKQF--MHIPPEPPAIVEDKRP-----PSSWPFKGR--IELRQLKIRYRPNAPLVLKGI 1236
RIK+ + VE+ +P P G+ +E + Y L+LK +
Sbjct: 283 RIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGY-DGGRLLLKDL 341
Query: 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
+ G R+ +VG G+GK+TL+ L + P G++
Sbjct: 342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
|
Length = 530 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG 1285
L+ ++ T + G V V+G +G GKTTL++ + V P+ GSI ++G I G
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG 73
|
Length = 259 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+++ L Y P L+ I T G + V+G +G GKTTL++ + V GSI
Sbjct: 2 LQISHLYADY-GGKP-ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT 59
Query: 1276 IDGVDI 1281
+DG +
Sbjct: 60 LDGKPV 65
|
Length = 255 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL---VEPA--GGSILIDGVDICSMG-- 1285
LKG++ E + ++G +G GK+T + L R+ ++ A GS+ +DG DI G
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 1286 LKDLRVKLSIIPQEPTLFRGSVRTNL 1311
L +LR ++ ++ Q P F S+R N+
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENI 146
|
Length = 305 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+ L RY + VLKG++ + G + ++G +GSGK+T + + L +P+ GSI
Sbjct: 7 LEVEDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR 64
Query: 1276 IDGVDI 1281
++G +I
Sbjct: 65 VNGEEI 70
|
Length = 256 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE--P- 1269
+I++R L Y LK I ++ +G +G GK+TL+ R+ E P
Sbjct: 11 PSKIQVRNLNFYYGKFH--ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPE 68
Query: 1270 --AGGSILIDGVDICS--MGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311
A G IL+DG +I + + LR K+ ++ Q+PT F S+ N+
Sbjct: 69 QRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNI 114
|
Length = 260 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT---LISALFRLVEPAGG 1272
+E + + Y + L I+ + G+ ++G GSGK+T LI+ L +
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEP 1300
I +DG+ + + + D+R K+ I+ Q P
Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNP 93
|
Length = 282 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFR---LVEPAG- 1271
I L+ + I Y +K + C G ++G +G GK+T++ +L R L+E
Sbjct: 14 ISLQNVTISY--GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 1272 -GSILIDGVDICSMGLK--DLRVKLSIIPQEPTLFRGSVRTNL 1311
G +L DG D+ + ++R ++ ++ Q+P F S+ N+
Sbjct: 72 KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENI 114
|
Length = 269 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL--VEPAG---GSILIDGVDICSMGLK 1287
+K + GT ++G +G GKTT + A+ R+ + P G IL+DG DI +
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 1288 D--LRVKLSIIPQEPTLF 1303
+R ++ ++ Q+P F
Sbjct: 80 PVAMRRRVGMVFQKPNPF 97
|
Length = 252 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.004
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG-LKDLR 1290
VLKGI T G ++G G+GK+TL+ + +V P G++ I G + K +
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85
Query: 1291 VKLSIIPQEPTLFRG-SVRTNL 1311
+ + ++PQEP LF SV+ N+
Sbjct: 86 LGIYLVPQEPLLFPNLSVKENI 107
|
Length = 510 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+++R + R N + I+ T G ++G +G GKTTL+ + + P G IL
Sbjct: 8 VDMRGVSFT-RGNRC-IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL 65
Query: 1276 IDGVDICSM---GLKDLRVKLSIIPQEPTLF 1303
DG +I +M L +R ++S++ Q LF
Sbjct: 66 FDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96
|
Length = 269 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 13/199 (6%)
Query: 626 IAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIR--DNILYGKP 683
I + G G+GKS+L I G + G V+ G ++ ++ ++ + SG + +NI + K
Sbjct: 53 IGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGL-SGQLTGIENIEF-KM 110
Query: 684 MDKARYDKAIKACALDKDINNFDHGDLTE-IGQRGLNLSGGQKQRIQLARAVYNDADIYL 742
+ K IK A+ I F +L E I Q S G + ++ + + + DI +
Sbjct: 111 LCMGFKRKEIK--AMTPKIIEFS--ELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILV 166
Query: 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801
D+ S D A ++ + KT+ V+H + + + +I +EGG++ G
Sbjct: 167 IDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGE 226
Query: 802 YQELLLAGTAFEQLVNAHR 820
++L +E +N +
Sbjct: 227 LDDVL---PKYEAFLNDFK 242
|
Length = 264 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 42/165 (25%), Positives = 57/165 (34%), Gaps = 45/165 (27%)
Query: 627 AVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDK 686
V G G GKSSLL A+LG V G+ RD +Y K +DK
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVP----------------GTTRDPDVYVKELDK 44
Query: 687 ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF--- 743
+ + D L E G G R +LAR + AD+ L
Sbjct: 45 GKV-----------KLVLVDTPGLDEFGGLG---------REELARLLLRGADLILLVVD 84
Query: 744 -DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDR 787
D S DA E +ILV ++++ L E +
Sbjct: 85 STDRESEEDAKLLILRRLRK-----EGIPIILVGNKIDLLEEREV 124
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1354 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.98 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.98 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.98 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.98 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.98 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.98 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.98 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.97 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.97 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.97 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.97 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.97 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.97 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.97 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.97 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.97 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.96 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.96 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.96 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.96 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.95 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.95 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.95 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.95 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.95 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.94 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.94 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.94 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.94 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.93 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.93 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.93 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.93 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.93 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.92 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.92 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.92 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.91 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.91 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.9 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.89 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.89 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.88 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.88 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.88 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.88 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.87 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.87 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.87 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.86 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.86 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.86 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.85 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.85 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.85 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.85 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.85 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.84 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.84 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.83 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.83 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.83 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.83 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.83 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.83 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.83 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.82 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.82 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.82 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.82 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.82 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.82 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.81 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.81 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.81 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.81 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.81 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.8 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.8 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.8 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.79 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.79 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.79 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.79 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.79 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.79 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.78 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.78 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.78 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.78 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.78 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.78 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.78 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.78 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.78 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.78 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.78 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.78 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.78 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.78 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.78 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.77 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.77 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.77 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.77 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.77 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.77 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.77 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.77 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.77 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.77 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.77 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.77 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.77 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.77 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.76 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.76 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.76 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.76 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.76 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.76 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.76 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-245 Score=2318.40 Aligned_cols=1145 Identities=45% Similarity=0.741 Sum_probs=1058.1
Q ss_pred CCCCccCCh--hHHHHHHhHHHHHHhhcCCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHH
Q 000680 197 QTELGKAGL--LRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNV 274 (1354)
Q Consensus 197 ~~p~~~a~~--~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~ 274 (1354)
++|.+.++. +|++||||++|++++|||++|+.+|+|+++++|+++.+.++|++.|+++.++. ++.|+++++++++
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~---~~~psl~~al~~~ 198 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRS---GKKPSLLRALLRT 198 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccc---cCCcHHHHHHHHH
Confidence 345555555 99999999999999999999999999999999999999999999999876432 2578999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1354)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~ 354 (1354)
||+++++.+++..+.+...|++|++|+.+++|.++++.+.+.||.|+++++++.++++++.+||+|..+++|+|+|++++
T Consensus 199 f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~ 278 (1381)
T KOG0054|consen 199 FGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALI 278 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999988777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000680 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLN 434 (1354)
Q Consensus 355 ~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i~~~l~ 434 (1354)
++||+|+|++++.+++++++|+|+|+||+|++|+++++.++|.+|++|+|+++++++||+++|+++++|++++++++|+|
T Consensus 279 ~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 279 SAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTII 514 (1354)
Q Consensus 435 ~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v 514 (1354)
.+++++++++|++.|+.+|+|+++|||+|+|||+|||||||++|.++|+++|++|++++||..+..+++.++++++|+++
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhccccCCCCc
Q 000680 515 SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1354)
Q Consensus 515 ~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~ 594 (1354)
++++|++|++..++.+|+++|||++++||+|+.|+.++|+.++.++|++||++|+++||..+|.+++..++.+....+.+
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 518 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENA 518 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCce
Confidence 99999999953348999999999999999999999999999999999999999999999999998766654444556678
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCCcH
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI 674 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~~~~ti 674 (1354)
|+++|++|+|+++.+.++|+||||+|++|+++||||++||||||||++|+||+++.+|+|.++|++|||||+|||+|+||
T Consensus 519 i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTv 598 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTV 598 (1381)
T ss_pred EEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcH
Confidence 99999999999865667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHH
Q 000680 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1354)
Q Consensus 675 ~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~ 754 (1354)
||||+||.+||++||++|+++|+|++|++.||.||+|+|||||.||||||||||+||||+|+|+||||||||+||||+|+
T Consensus 599 reNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahv 678 (1381)
T KOG0054|consen 599 RENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHV 678 (1381)
T ss_pred HHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchHHHHHHHhhhhcccCCCCCCCCC
Q 000680 755 AATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQ 834 (1354)
Q Consensus 755 ~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1354)
++|||++|+++.+++||+|+|||+++++++||.|++|+||+|.+.|+|+|+++.+..+.++..+.........+.+
T Consensus 679 g~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~~---- 754 (1381)
T KOG0054|consen 679 GKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEEASEK---- 754 (1381)
T ss_pred hHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhccccccc----
Confidence 9999999999999999999999999999999999999999999999999999988888887433221111100000
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCccc-cccccccCCcchHHHHhhccccHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 000680 835 GGAEKVEKGRTARPEEPNGIYPRKESSEG-EISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFV 913 (1354)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~l~~~~~~~~~ 913 (1354)
..+..+.. ...+.......+...+. ....+...++.++|+++.|.|+|++|+.|+++.+|+..+++.+++.+..+
T Consensus 755 -~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~ 830 (1381)
T KOG0054|consen 755 -DLESGESS---RESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQ 830 (1381)
T ss_pred -cccccccc---cchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 00000000 00000000000000000 00111124566788899999999999999998778877777788888899
Q ss_pred HHHHhHHHHHHhhhcCCC------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 000680 914 GLQAAATYWLAYAIQIPK------ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFD 987 (1354)
Q Consensus 914 ~~~~~~~~wl~~~~~~~~------~~~~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd 987 (1354)
.+..+.+||+++|++... ....+|+++|+++++++.++.+++++.+...++++|++||++|+++++|+||+|||
T Consensus 831 ~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd 910 (1381)
T KOG0054|consen 831 VLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD 910 (1381)
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC
Confidence 999999999999997642 34568999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000680 988 STPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRING 1067 (1354)
Q Consensus 988 ~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~ 1067 (1354)
+||+|||+||||+|++.+|..+|..+..++.++++++++++++++++|+++++++|+.++++++++||++++||+||+++
T Consensus 911 tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLes 990 (1381)
T KOG0054|consen 911 TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLES 990 (1381)
T ss_pred CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000680 1068 TTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGY 1147 (1354)
Q Consensus 1068 ~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~vl~~~g~ 1147 (1354)
.+|||+++||+||++|+.|||||++|++|.+++.+++|.+++++|....++||+++|+|++++++++++++++++...+.
T Consensus 991 itRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~ 1070 (1381)
T KOG0054|consen 991 ITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL 1070 (1381)
T ss_pred cccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888766555
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCC
Q 000680 1148 VAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRP 1227 (1354)
Q Consensus 1148 ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~ 1227 (1354)
.++|.+|++++|++++++.++|++|+.+++|++|+|||||.||.++|+|+|+..+..+||++||.+|+|+|+|+++||+|
T Consensus 1071 ~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp 1150 (1381)
T KOG0054|consen 1071 ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP 1150 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC
Confidence 88999999999999999999999999999999999999999999999997776666669999999999999999999999
Q ss_pred CCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccch
Q 000680 1228 NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSV 1307 (1354)
Q Consensus 1228 ~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTI 1307 (1354)
+.|+|||||||+|+||||||||||||||||||+++|||+.||.+|+|.|||+||++++|||||++++||||||+||+||+
T Consensus 1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTv 1230 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTV 1230 (1381)
T ss_pred CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1308 RTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1308 R~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+||||+++|||+|||+|||+|||+++|+++|+|||+ +|+|||+|
T Consensus 1231 R~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvG 1279 (1381)
T KOG0054|consen 1231 RFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVG 1279 (1381)
T ss_pred ccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChH
Confidence 9999999999999999999999999999999999999 79999997
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-190 Score=1915.57 Aligned_cols=1313 Identities=30% Similarity=0.495 Sum_probs=1075.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCcccc-hhHHHHHHHHHHHHHHHHHHHHHH---HhhhccCCc-
Q 000680 22 GSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKN-HNYGRIRR-ECVSIVVSACCAVVGIAYLGYCLW---NLIAKNDSS- 95 (1354)
Q Consensus 22 ~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~- 95 (1354)
.||||++++++|+|++|+|+++|.+++.. ++. +..++.++ .+.+....++..+.....++..+. ....+....
T Consensus 29 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (1622)
T PLN03130 29 YTPCATDSLVINISHLVLLGLCLYRIWLI-KKDHKVQRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISVLNLDGQTSL 107 (1622)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHHh-ccccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 39999999999999999999999888743 331 22222222 222222222222222111211111 111111111
Q ss_pred chh-HH-HHHHHHHHHHHHHHHHH---H--hccchhHHHHHHHHHH---HHHHHHHHHHHHHhhcccccccchhhhHHHH
Q 000680 96 MSW-LV-STVRGLIWVSLAISLLV---K--RSKWIRMLITLWWMSF---SLLVLALNIEILARTYTINVVYILPLPVNLL 165 (1354)
Q Consensus 96 ~~~-~~-~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1354)
.+. .. .....++|+.+.+++.. + +.+...+.+++||++. +++.............. ...++..+.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 186 (1622)
T PLN03130 108 PPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLVLSVKEYYSSFV-LYLYISEVAAQVL 186 (1622)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHHHHHHHHHhccc-cceehhHHHHHHH
Confidence 111 11 22234555433322221 1 2233346678899887 33332222221211110 1224444444443
Q ss_pred HHHHH-hhc-ccCCCCCCC------CCCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhcCCCCCCCCCCCCCcc
Q 000680 166 LLFSA-FRN-FSHFTSPNR------EDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPE 237 (1354)
Q Consensus 166 ~~~~~-~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~ 237 (1354)
+.+.. +.. ..+...+.. ..+.+++|...+++++||++||++||++|||++|++++|||++|+.+|||+++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~ 266 (1622)
T PLN03130 187 FGILLLVYFPNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTW 266 (1622)
T ss_pred HHHHHHHHHhcCCCCcccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChh
Confidence 32222 111 111111110 1123455555667889999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHH
Q 000680 238 DEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEG 317 (1354)
Q Consensus 238 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g 317 (1354)
|+++.+.++|++.|+++.+ +++++++++++++|++.++..++++++.+++.+++|++++.+++++.+++ ..+.|
T Consensus 267 ~~~~~~~~~~~~~w~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~-~~~~~ 340 (1622)
T PLN03130 267 DQTETLYRSFQKCWDEELK-----KPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGE-PAWIG 340 (1622)
T ss_pred hhHHHHHHHHHHHHHHHhc-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cchHH
Confidence 9999999999999987642 13478999999999999999999999999999999999999999986543 23567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHH
Q 000680 318 LSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHL 397 (1354)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~ 397 (1354)
+.++++++++.++.+++.++|++...++++++|+++...+|+|.++++....++.++|+++|+|++|++++.+++..+|.
T Consensus 341 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~ 420 (1622)
T PLN03130 341 YIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHT 420 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777778888888899999999999999999999999998888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH
Q 000680 398 TWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK 477 (1354)
Q Consensus 398 ~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~ 477 (1354)
+|.+|+++++++++||..+|+++++|++++++++|++..+++++++.++++++.+|+|++.++|+|+|||+||+|+||+.
T Consensus 421 l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~ 500 (1622)
T PLN03130 421 LWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENS 500 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 478 FKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALS 557 (1354)
Q Consensus 478 f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~ 557 (1354)
|.+++++.|++|++..++..+..++..+++...|.++++++|++|.+.+ +.+|++.+|+++++++.++.|+..+|..+.
T Consensus 501 ~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~-g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~ 579 (1622)
T PLN03130 501 FQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLG-GDLTPARAFTSLSLFAVLRFPLFMLPNLIT 579 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888888878888888888899888776 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCcchhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHH
Q 000680 558 IMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637 (1354)
Q Consensus 558 ~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKS 637 (1354)
.+.++++|++||++||..+|..+... .+.......|+++|++|+|+++.++++|+|+||+|++||+++|+||+|||||
T Consensus 580 ~~~~a~~s~~RI~~~L~~~e~~~~~~--~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKS 657 (1622)
T PLN03130 580 QAVNANVSLKRLEELLLAEERVLLPN--PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKT 657 (1622)
T ss_pred HHHHHHHHHHHHHHHHcCcccccccC--CcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHH
Confidence 99999999999999998766532111 1111123479999999999865456799999999999999999999999999
Q ss_pred HHHHHHhCCccCCC-cEEEEcCeEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCC
Q 000680 638 SLLYAILGEIPKIS-GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1354)
Q Consensus 638 tLl~~i~g~~~~~~-G~i~~~g~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~ 716 (1354)
||+++|+|+++|.+ |+|.++++||||+|+||++++||||||+||.++++++|++++++|+|++|++.+|+||+|+|||+
T Consensus 658 TLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~ 737 (1622)
T PLN03130 658 SLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGER 737 (1622)
T ss_pred HHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCC
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeE
Q 000680 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1354)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1354)
|.+|||||||||+||||+|++||||||||||||||++++++++++++.+.+++||+|+|||+++.++.||+|++|++|+|
T Consensus 738 G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 738 GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMI 817 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999999887889999999999999999999999999999
Q ss_pred EEecChHHHHhcCchHHHHHHHhhhhcccCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCccccccccccCCcchH
Q 000680 797 TQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTED 876 (1354)
Q Consensus 797 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (1354)
+++|+++|++++++.+.++...+....+..+ . ......++.+ .......+. ...+ +.....+...+....+.++
T Consensus 818 ~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~-~--~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 891 (1622)
T PLN03130 818 KEEGTYEELSNNGPLFQKLMENAGKMEEYVE-E--NGEEEDDQTS-SKPVANGNA-NNLK-KDSSSKKKSKEGKSVLIKQ 891 (1622)
T ss_pred EEeCCHHHHHhcchhHHHHHHhccccccccc-c--cccccccccc-ccccccccc-cccc-ccccccccccccchhhhhH
Confidence 9999999999888778777654321110000 0 0000000000 000000000 0000 0000000000011234567
Q ss_pred HHHhhccccHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCC---CcchHHHHHHHHHHHHHHHHHH
Q 000680 877 EEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK---ITSGILIGVYAGVSTASAVFVY 953 (1354)
Q Consensus 877 e~~~~g~v~~~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~~---~~~~~~~~iy~~l~~~~~i~~~ 953 (1354)
|+++.|.++|++|+.|+++.++.+.+++++++.+....+..+.++|++.|.+... .....++++|++++++..++.+
T Consensus 892 e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~ 971 (1622)
T PLN03130 892 EERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTL 971 (1622)
T ss_pred HHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999998666655555555666667778889999999986421 2245678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFV 1033 (1354)
Q Consensus 954 ~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~ 1033 (1354)
++.++....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.+++++++
T Consensus 972 ~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~ 1051 (1622)
T PLN03130 972 LNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIV 1051 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHH
Q 000680 1034 TWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFH 1113 (1354)
Q Consensus 1034 ~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~ 1113 (1354)
+|..+++++|+.+++++++++|.+++|+++|+++.+++|+++|++|+++|++|||+|+.+++|.+++.+..|.+.+..+.
T Consensus 1052 ~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~ 1131 (1622)
T PLN03130 1052 STISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLV 1131 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877788888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000680 1114 TNGVMEWLILRVEALQNLTLFTAALFLVLIPRGY-----VAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIK 1188 (1354)
Q Consensus 1114 ~~~~~~wl~~~l~~l~~~~~~~~~~~~vl~~~g~-----ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~ 1188 (1354)
....++|++.++++++.+++++.+.+.+. ..+. ..++.+|++++|++.+..++.++++.++++|+.++|+||+.
T Consensus 1132 ~~~~~~wl~~~l~~~~~~~i~~~~~~~v~-~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~ 1210 (1622)
T PLN03130 1132 NMSSNRWLAIRLETLGGLMIWLTASFAVM-QNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 1210 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887766555544332 2222 12688999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccC
Q 000680 1189 QFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1354)
Q Consensus 1189 e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e 1268 (1354)
+|++.|+|++...++..+++.||.+|.|+|+||+|+|+++.++|||||||+|+||||||||||||||||||+++|+|+||
T Consensus 1211 e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~ 1290 (1622)
T PLN03130 1211 TYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE 1290 (1622)
T ss_pred HHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 99999988764334445667899999999999999999887789999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----
Q 000680 1269 PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS---- 1344 (1354)
Q Consensus 1269 ~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt---- 1344 (1354)
|++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|||+||++||++|||+++|+||||
T Consensus 1291 p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge 1370 (1622)
T PLN03130 1291 LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSE 1370 (1622)
T ss_pred CCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccc
Q 000680 1345 SGKLFSAA 1352 (1354)
Q Consensus 1345 ~G~n~s~~ 1352 (1354)
+|.|+|.|
T Consensus 1371 ~G~nLSgG 1378 (1622)
T PLN03130 1371 AGENFSVG 1378 (1622)
T ss_pred CCCCCCHH
Confidence 58899976
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-185 Score=1872.07 Aligned_cols=1309 Identities=29% Similarity=0.481 Sum_probs=1064.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccc-hhHHHHHHHHHHHHHHHHHHHHHH---HhhhccCCc-ch
Q 000680 23 SFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRR-ECVSIVVSACCAVVGIAYLGYCLW---NLIAKNDSS-MS 97 (1354)
Q Consensus 23 ~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~ 97 (1354)
||||++++++|+|++|+|+++|.+++..+++++...+.++ .+.+....++..+.....+++.+. ...-+.... .+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (1495)
T PLN03232 30 TPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEPVLRLVMGISLFDMDEETDLPP 109 (1495)
T ss_pred CccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 8999999999999999999999888744322222233222 223322222222222222222111 110011100 01
Q ss_pred h-HH-HHHHHHHHHHHHHHHH---HHh--ccchhHHHHHHHHHH---HHHHHHHHHHHHHhhcccccccchhhhHHHHHH
Q 000680 98 W-LV-STVRGLIWVSLAISLL---VKR--SKWIRMLITLWWMSF---SLLVLALNIEILARTYTINVVYILPLPVNLLLL 167 (1354)
Q Consensus 98 ~-~~-~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1354)
. .. .....++|+...+++. .++ .+...+.+++||++. +++............. ....++..+.+.+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 188 (1495)
T PLN03232 110 FEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLVLPLKNSINRT-ALYLCISSRCCQALFG 188 (1495)
T ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHHHHHHHHHHhcc-ccceehhHHHHHHHHH
Confidence 1 11 1223344443222211 222 233446678899887 3333222211111110 0122444444443322
Q ss_pred HHH-hhcc-cCCCCCCCC-------CCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhcCCCCCCCCCCCCCccC
Q 000680 168 FSA-FRNF-SHFTSPNRE-------DKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPED 238 (1354)
Q Consensus 168 ~~~-~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~ 238 (1354)
+.. +... .+.. +... ++..++....+.+++||+++|++||++|||++|++++||+++|+.+|||+|+++|
T Consensus 189 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l~~~~ 267 (1495)
T PLN03232 189 ILLLVYIPELDPY-PGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWD 267 (1495)
T ss_pred HHHHHhcccCCCC-CcccccccccccccccccccccCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhh
Confidence 221 1111 1111 1100 0000111111356789999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHH
Q 000680 239 EASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGL 318 (1354)
Q Consensus 239 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~ 318 (1354)
+++.++++|++.|+++.+ .++++++++++++|++.++..++++++.+++.+++|++++.+++++++++. .+.|+
T Consensus 268 ~~~~~~~~~~~~w~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~-~~~~~ 341 (1495)
T PLN03232 268 QTETLIKRFQRCWTEESR-----RPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP-AWVGY 341 (1495)
T ss_pred hHHHHHHHHHHHHHHhhc-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cchHH
Confidence 999999999999987542 135789999999999999999999999999999999999999999865432 34678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHH
Q 000680 319 SIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLT 398 (1354)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~ 398 (1354)
.++++++++.++.+++.++|++...+++.++|..+...+|+|.++++....++.++|+++|+|++|++++.++..++|.+
T Consensus 342 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~l 421 (1495)
T PLN03232 342 VYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGL 421 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888899999999999999999999999999999988888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHH
Q 000680 399 WSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKF 478 (1354)
Q Consensus 399 w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f 478 (1354)
|..|++++++++++|+.+|+++++|++++++++|++..+++++++.+++.++.+|+|.+.++|+++|||+||+|+||+.+
T Consensus 422 ~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~ 501 (1495)
T PLN03232 422 WSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSF 501 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 479 KSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSI 558 (1354)
Q Consensus 479 ~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~ 558 (1354)
.+++++.|++|++..++.....++..+++...|.++++++|++|.+.+ +++|++.+|+++++++.+..|+..+|..+..
T Consensus 502 ~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~-~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~ 580 (1495)
T PLN03232 502 ESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLG-GDLTPARAFTSLSLFAVLRSPLNMLPNLLSQ 580 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887777777777778888788888887775 7899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCcchhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHH
Q 000680 559 MIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSS 638 (1354)
Q Consensus 559 ~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKSt 638 (1354)
+.++++|++||++||..+|...... .+.......|+++|++|+|++++++++|+|+||+|++||+++|+||+||||||
T Consensus 581 ~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKST 658 (1495)
T PLN03232 581 VVNANVSLQRIEELLLSEERILAQN--PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTS 658 (1495)
T ss_pred HHHHHHHHHHHHHHHcCcccccccc--CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHH
Confidence 9999999999999998765321110 11112234799999999998654568999999999999999999999999999
Q ss_pred HHHHHhCCccCCCcE-EEEcCeEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCC
Q 000680 639 LLYAILGEIPKISGT-VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1354)
Q Consensus 639 Ll~~i~g~~~~~~G~-i~~~g~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g 717 (1354)
|+++|+|+++|++|. +.++++||||+|+||++++||||||+||.++++++|++++++|+|.+|++.+|+||+|+|||+|
T Consensus 659 Ll~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G 738 (1495)
T PLN03232 659 LISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERG 738 (1495)
T ss_pred HHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCC
Confidence 999999999999975 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEE
Q 000680 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1354)
Q Consensus 718 ~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1354)
.+|||||||||+||||+|++||||||||||||||++++++++++++.+.+++||+|+|||+++.++.||+|++|++|+|+
T Consensus 739 ~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~ 818 (1495)
T PLN03232 739 VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIK 818 (1495)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999988777899999999999999999999999999999
Q ss_pred EecChHHHHhcCchHHHHHHHhhhhcccCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCccccccccccCCcchHH
Q 000680 798 QSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDE 877 (1354)
Q Consensus 798 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 877 (1354)
++|+++|+.++++.+.++.+.+.......+ . .+ +.++..... +...... ..+.....+...+....+.++|
T Consensus 819 ~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~-~-~~---~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e 889 (1495)
T PLN03232 819 EEGTFAELSKSGSLFKKLMENAGKMDATQE-V-NT---NDENILKLG---PTVTIDV-SERNLGSTKQGKRGRSVLVKQE 889 (1495)
T ss_pred EecCHHHHHhcchhHHHHHHhccccccccc-c-cc---ccccccccc---ccccccc-cccccccccccccchhhhhhHH
Confidence 999999999888878777654332110000 0 00 000000000 0000000 0000000000000112345678
Q ss_pred HHhhccccHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCC---CcchHHHHHHHHHHHHHHHHHHH
Q 000680 878 EMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK---ITSGILIGVYAGVSTASAVFVYF 954 (1354)
Q Consensus 878 ~~~~g~v~~~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~~---~~~~~~~~iy~~l~~~~~i~~~~ 954 (1354)
+++.|.++|++|++|+++.++.+.+.+++++.+...++..+.++|++.|.+... ....+|+++|++++++..++.++
T Consensus 890 ~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~ 969 (1495)
T PLN03232 890 ERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFT 969 (1495)
T ss_pred HHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998776555555555666667777889999999986431 23467899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000680 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVT 1034 (1354)
Q Consensus 955 ~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~ 1034 (1354)
+.++....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++++
T Consensus 970 ~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~ 1049 (1495)
T PLN03232 970 NSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVS 1049 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHH
Q 000680 1035 WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHT 1114 (1354)
Q Consensus 1035 ~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~ 1114 (1354)
+..+++++|+.+++++++.+|.+++|+++|+++.+++|+++|++|+++|+.|||+|+.+++|.+++.+..|.+.+..+..
T Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (1495)
T PLN03232 1050 TISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLAN 1129 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777887777888899999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000680 1115 NGVMEWLILRVEALQNLTLFTAALFLVLIPRGYV-----APGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189 (1354)
Q Consensus 1115 ~~~~~wl~~~l~~l~~~~~~~~~~~~vl~~~g~l-----s~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e 1189 (1354)
...++|+..+++.++.++++..+.+.+. ..+.+ .++.+|++++|+..+..++.++++.++++|+.++|+|||.|
T Consensus 1130 ~~~~~wl~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e 1208 (1495)
T PLN03232 1130 TSSNRWLTIRLETLGGVMIWLTATFAVL-RNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGN 1208 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999988776555444433332 23332 25678889999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCC
Q 000680 1190 FMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP 1269 (1354)
Q Consensus 1190 ~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~ 1269 (1354)
|++.|+|++...++..+++.||.+|.|+|+||+|+|+++.++|||||||+|+||||||||||||||||||+++|+|+|||
T Consensus 1209 ~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p 1288 (1495)
T PLN03232 1209 YIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL 1288 (1495)
T ss_pred HhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 99998886543233345668999999999999999998877899999999999999999999999999999999999999
Q ss_pred CCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----C
Q 000680 1270 AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----S 1345 (1354)
Q Consensus 1270 ~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~ 1345 (1354)
++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|||+||++||++|+|+++|+|||| +
T Consensus 1289 ~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1289 EKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred CCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred Ccccccc
Q 000680 1346 GKLFSAA 1352 (1354)
Q Consensus 1346 G~n~s~~ 1352 (1354)
|.|+|.|
T Consensus 1369 G~~LSgG 1375 (1495)
T PLN03232 1369 GENFSVG 1375 (1495)
T ss_pred CCCCCHH
Confidence 8899976
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-184 Score=1866.82 Aligned_cols=1324 Identities=31% Similarity=0.515 Sum_probs=1074.5
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 000680 18 EFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRREC---VSIVVSACCAVVGIAYLGYCLWNLIAKNDS 94 (1354)
Q Consensus 18 ~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1354)
.||| ||||+++++.|+|+.++++++|+.++...+++ ....++++ .+.....+..++.++.+.+.+|........
T Consensus 20 ~~d~-t~~f~~~~~~~~p~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1522)
T TIGR00957 20 NPDF-TKCFQNTVLAWVPCFYLWVCFPCYFLYLSRHD--RGYIQMTHLNKTKTALGFLLWIVCWADLFYSFWERSHGRAP 96 (1522)
T ss_pred CCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 3678 99999999999999999999998876332222 12122222 222222222222222233344432111111
Q ss_pred -cchhHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHH-HHHHHHHhhcc---cccccchhhhHHHHHH
Q 000680 95 -SMSWLVSTVRGLIWVSLAISLLVKRS--KWIRMLITLWWMSFSLLVLA-LNIEILARTYT---INVVYILPLPVNLLLL 167 (1354)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 167 (1354)
........+..++|+...+....++. ..++..+..||++..++... .+......... ...+....+...+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1522)
T TIGR00957 97 APVFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFALV 176 (1522)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccccccceehhhHHHHHHHH
Confidence 11123334455555433222222222 22345667888877654332 11111111100 0111111112211111
Q ss_pred HHHhhcccCCCCCCCCCCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhcCCCCCCCCCCCCCccCcHHHHHHHH
Q 000680 168 FSAFRNFSHFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKF 247 (1354)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~ 247 (1354)
+..+..... .+. ....++...+.+++||++||++||++|||+||++++|||++|+.+|||+++++++++.++++|
T Consensus 177 ~~~~~~~~~--~~~---~~~~~~~~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~ 251 (1522)
T TIGR00957 177 LSQLVLSCF--SDK---SPLFSETNHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVL 251 (1522)
T ss_pred HHHHHHHhh--cCC---CCccccccccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHH
Confidence 111110000 000 000011011234689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc------------------------------------CCCCCchHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000680 248 AYAWDSLVRENN------------------------------------SNNNGNLVRKVITNVYLKENIFIAICALLRTI 291 (1354)
Q Consensus 248 ~~~w~~~~~~~~------------------------------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 291 (1354)
++.|+++.++.+ ++.++++++++++++||+.++..++++++.++
T Consensus 252 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~ 331 (1522)
T TIGR00957 252 VENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDL 331 (1522)
T ss_pred HHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999998642110 01234679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q 000680 292 AVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKK 371 (1354)
Q Consensus 292 ~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~ 371 (1354)
+.+++|++++.+++|+.++..+.+.||.++++++++.++.+++.++|+|...++|+++|++|.+.||+|+|+++...+++
T Consensus 332 ~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~ 411 (1522)
T TIGR00957 332 MMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKS 411 (1522)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCC
Confidence 99999999999999987654455678999999999999999999999999999999999999999999999999998889
Q ss_pred CCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 372 HSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIA 451 (1354)
Q Consensus 372 ~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~ 451 (1354)
.++|+++|+|++|++++.++..++|.+|..|++++++++++|..+|+++++|++++++++|++..+++.++++++++|+.
T Consensus 412 ~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (1522)
T TIGR00957 412 STVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKS 491 (1522)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC
Q 000680 452 QDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTG-SAPL 530 (1354)
Q Consensus 452 ~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~-~~~L 530 (1354)
+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++.+++..+...+..+.++..|.++.+++|++|.+.. ++.|
T Consensus 492 ~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l 571 (1522)
T TIGR00957 492 KDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNIL 571 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999999999999999999999998888877777778889988888898887764 4689
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhccc-cCCCCcEEEEeeEEEeCCCCC
Q 000680 531 NASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL-QKSDRSVKIQEGNFSWDPELA 609 (1354)
Q Consensus 531 t~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~-~~~~~~i~~~~~~f~~~~~~~ 609 (1354)
+++.+|+++++++.++.|+..+|..+..+.++++|++||++||..+|.++...+.... +.....|+++|++|+|+++ +
T Consensus 572 ~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~ 650 (1522)
T TIGR00957 572 DAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD-L 650 (1522)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC-C
Confidence 9999999999999999999999999999999999999999999876654321111111 1122479999999999753 3
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCCcHHHHHhcCCCCCHHHH
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARY 689 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~ 689 (1354)
+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+||||||+||++++||+|||.||.++++++|
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 730 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYY 730 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHH--Hhc
Q 000680 690 DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM--AAL 767 (1354)
Q Consensus 690 ~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~--~~~ 767 (1354)
++++++|++.+|++.+|+||+|.+|++|.+|||||||||+||||+|++||++||||||||||+++++++++.+.. +..
T Consensus 731 ~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~ 810 (1522)
T TIGR00957 731 QQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL 810 (1522)
T ss_pred HHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999874 456
Q ss_pred CCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchHHHHHHHhhhhcccCCCCCC--CCCCCcccc----c
Q 000680 768 EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDN--AGQGGAEKV----E 841 (1354)
Q Consensus 768 ~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~ 841 (1354)
+++|+|+|||+++.++.||+|++|++|+|++.|+++++.++++.+.++...+....+.....+. ..+..++.. +
T Consensus 811 ~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1522)
T TIGR00957 811 KNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIE 890 (1522)
T ss_pred cCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhcccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999999999998777777776543211110000000 000000000 0
Q ss_pred cc-------cCCCCC-----CCCCCCCCCCC-cccc----ccccccCCcchHHHHhhccccHHHHHHHHHhccchhHHHH
Q 000680 842 KG-------RTARPE-----EPNGIYPRKES-SEGE----ISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCL 904 (1354)
Q Consensus 842 ~~-------~~~~~~-----~~~~~~~~~~~-~~~~----~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~l 904 (1354)
.. .....+ ........... +..+ ...+...+..++|+++.|.+++++|+.|+++.+ +..+++
T Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g-~~~~~~ 969 (1522)
T TIGR00957 891 NGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIG-LFITFL 969 (1522)
T ss_pred ccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcC-HHHHHH
Confidence 00 000000 00000000000 0000 000011234567788899999999999999754 444444
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcCCC-----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000680 905 GVLAQSGFVGLQAAATYWLAYAIQIPK-----ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIF 979 (1354)
Q Consensus 905 ~~~~~~~~~~~~~~~~~wl~~~~~~~~-----~~~~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll 979 (1354)
.+++.++..++..+.++|+++|.+... .....++++|++++++..++.+++.++....+.++++++|++++++++
T Consensus 970 ~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 1049 (1522)
T TIGR00957 970 SIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKL 1049 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666778889999999986421 123467789999999999999998899999999999999999999999
Q ss_pred cCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 980 KAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATA 1059 (1354)
Q Consensus 980 ~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~s 1059 (1354)
++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|+++++++|+++++++++++|.+++
T Consensus 1050 ~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (1522)
T TIGR00957 1050 RSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASS 1129 (1522)
T ss_pred cCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888888888899999999999
Q ss_pred HHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 1060 RELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF 1139 (1354)
Q Consensus 1060 r~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~ 1139 (1354)
|+++|++.++++|+++|++|+++|+.|||+|+++++|.+++.+..|.+++..+.....++|+..++++++.+++++++.+
T Consensus 1130 r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1209 (1522)
T TIGR00957 1130 RQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALF 1209 (1522)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887655544443
Q ss_pred HHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEE
Q 000680 1140 LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELR 1219 (1354)
Q Consensus 1140 ~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~ 1219 (1354)
.+ ...+.+++|.+|++++|+.++..++.++++.++++|+.++|+||+.+|++.|+|++...++..+++.||.+|.|+|+
T Consensus 1210 ~v-~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~ 1288 (1522)
T TIGR00957 1210 AV-ISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFR 1288 (1522)
T ss_pred HH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEE
Confidence 33 34678999999999999999999999999999999999999999999999888865333344566789999999999
Q ss_pred EEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceeccc
Q 000680 1220 QLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQE 1299 (1354)
Q Consensus 1220 nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQd 1299 (1354)
||+|+|+++.++|||||||+|+||||||||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++||||
T Consensus 1289 nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQd 1368 (1522)
T TIGR00957 1289 NYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQD 1368 (1522)
T ss_pred EEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCC
Confidence 99999988777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1300 PTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1300 p~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+||+||||+||||+++++|||||+||++||++++|+++|+|||| .|.|+|.|
T Consensus 1369 p~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgG 1425 (1522)
T TIGR00957 1369 PVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVG 1425 (1522)
T ss_pred CcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHH
Confidence 999999999999999999999999999999999999999999999 58899976
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-174 Score=1754.46 Aligned_cols=1143 Identities=28% Similarity=0.467 Sum_probs=986.5
Q ss_pred CCCCccCChhHHHHHHhHHHHHHhhcCCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHhh
Q 000680 197 QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYL 276 (1354)
Q Consensus 197 ~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1354)
.+||++||++||++|||++|++++||+++|+.+|||+|+++++++.+.++|++.|+++.+++ .+.++++++++++|+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~---~~~~~L~~~l~~~~~ 79 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASA---KKNPKLLNALRRCFF 79 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhcc---CCCChHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999998764321 245789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 277 KENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1354)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~-~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~ 355 (1354)
+.++..++++++.+++.+++|++++.+++|++..+. ..+.|+.++++++++.++.+++.++++|...++++++|++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~ 159 (1490)
T TIGR01271 80 WRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFS 159 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999853322 2456888999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000680 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNV 435 (1354)
Q Consensus 356 ~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i~~~l~~ 435 (1354)
+||+|+|+++..+.++.++|+++|+|++|++++.+++.++|.+|.+|+++++++++||.++|+++++|++++++++|++.
T Consensus 160 ~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~ 239 (1490)
T TIGR01271 160 LIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQA 239 (1490)
T ss_pred HHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 436 PFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIIS 515 (1354)
Q Consensus 436 ~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~v~ 515 (1354)
++++.+.++|+++|+.+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++.+++..+..++..++++..|.+++
T Consensus 240 ~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1490)
T TIGR01271 240 CLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVV 319 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888787788888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhccccCCCCc
Q 000680 516 SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVR-MIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1354)
Q Consensus 516 ~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~-~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~ 594 (1354)
+++|++|.+.+ .++++.+||++++|++++.|+. .+|..+..+.++.+|++||++||..+|.++.. . ......
T Consensus 320 ~~~f~~y~~~~--~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~--~---~~~~~~ 392 (1490)
T TIGR01271 320 FLSVVPYALIK--GIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE--Y---NLTTTE 392 (1490)
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--c---cCCCCc
Confidence 99999988775 3789999999999999999985 79999999999999999999999887754311 1 112346
Q ss_pred EEEEeeEEEeCCCC-------------------------------CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHH
Q 000680 595 VKIQEGNFSWDPEL-------------------------------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI 643 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-------------------------------~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i 643 (1354)
|+++|++|+|+... .+++|+|+||+|++||+++|+|||||||||||++|
T Consensus 393 i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l 472 (1490)
T TIGR01271 393 VEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMI 472 (1490)
T ss_pred eEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999996310 13689999999999999999999999999999999
Q ss_pred hCCccCCCcEEEEcCeEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 644 LGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 644 ~g~~~~~~G~i~~~g~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
+|+++|++|+|.++|+||||+|+||++++||+|||+||.++++++|++++++|+|.+|++.+|+||+|++|++|.+||||
T Consensus 473 ~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgG 552 (1490)
T TIGR01271 473 MGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGG 552 (1490)
T ss_pred hCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChH
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~ 803 (1354)
|||||+||||+|++||+|||||||||||+++++++++.|+....+++|+|+|||+++.++.||+|++|++|+|++.|+++
T Consensus 553 qkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~ 632 (1490)
T TIGR01271 553 QRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFS 632 (1490)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999998877777899999999999999999999999999999999999
Q ss_pred HHHhcCchHHHHHHHhhh--h------------------cccCC-----CCCC-----CCCCC-cc--------------
Q 000680 804 ELLLAGTAFEQLVNAHRD--A------------------ITGLG-----PLDN-----AGQGG-AE-------------- 838 (1354)
Q Consensus 804 ~l~~~~~~~~~~~~~~~~--~------------------~~~~~-----~~~~-----~~~~~-~~-------------- 838 (1354)
++.+.+..+.+....... . ..... +.+. +.... .+
T Consensus 633 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1490)
T TIGR01271 633 ELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASA 712 (1490)
T ss_pred HHHhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 998765555544421000 0 00000 0000 00000 00
Q ss_pred ----------------cccccc-CCC-------CC------C-CCCCC------------------CCC-------C-C-
Q 000680 839 ----------------KVEKGR-TAR-------PE------E-PNGIY------------------PRK-------E-S- 860 (1354)
Q Consensus 839 ----------------~~~~~~-~~~-------~~------~-~~~~~------------------~~~-------~-~- 860 (1354)
..+... ... ++ . +.... ... . .
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1490)
T TIGR01271 713 RKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQL 792 (1490)
T ss_pred cccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence 000000 000 00 0 00000 000 0 0
Q ss_pred -----------------cc--------ccc-----cc-----cccCCcchHHHHhhccccHHHHHHHHHhccchhHHHHH
Q 000680 861 -----------------SE--------GEI-----SV-----KGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLG 905 (1354)
Q Consensus 861 -----------------~~--------~~~-----~~-----~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~l~ 905 (1354)
++ .+. .. +....+.++|+++.|.++|++|++|+++.+++..++++
T Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~ 872 (1490)
T TIGR01271 793 QTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIF 872 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHH
Confidence 00 000 00 00012345677889999999999999977665555555
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcCC---------CC-------------cchHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 906 VLAQSGFVGLQAAATYWLAYAIQIP---------KI-------------TSGIL-IGVYAGVSTASAVFVYFRSFFAAHL 962 (1354)
Q Consensus 906 ~~~~~~~~~~~~~~~~wl~~~~~~~---------~~-------------~~~~~-~~iy~~l~~~~~i~~~~~~~~~~~~ 962 (1354)
+++.++.+++..+.++|+..|.... +. ...+| +++|+++.++..++.+++.++..+.
T Consensus 873 ~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1490)
T TIGR01271 873 CLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHT 952 (1490)
T ss_pred HHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667788889999998886411 00 11122 4556666656667788899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000680 963 GLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAI 1042 (1354)
Q Consensus 963 ~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l 1042 (1354)
+.++++++|.+++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|+++++++
T Consensus 953 ~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~ 1032 (1490)
T TIGR01271 953 LLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAI 1032 (1490)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000680 1043 FAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLI 1122 (1354)
Q Consensus 1043 ~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~ 1122 (1354)
|+++++++++++|.+.+|+++|++..+++|+++|+.|+++|+.|||+|+++++|.+++.+..|.+.+.++.....++|+.
T Consensus 1033 ~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ 1112 (1490)
T TIGR01271 1033 PVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQ 1112 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCC
Q 000680 1123 LRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202 (1354)
Q Consensus 1123 ~~l~~l~~~~~~~~~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~ 1202 (1354)
.++++++.+.++.++++.+. ...+++|.+|++++|++.+..++.++++.+.++|+.++|+||+.+|++.|+|++...+
T Consensus 1113 ~~~~~i~~~~~~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~ 1190 (1490)
T TIGR01271 1113 MRIDIIFVFFFIAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSG 1190 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 99998876554443333222 2346788999999999999999999999999999999999999999998887542111
Q ss_pred --------------CCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccC
Q 000680 1203 --------------DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1354)
Q Consensus 1203 --------------~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e 1268 (1354)
...+|+.||..|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++
T Consensus 1191 ~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~ 1270 (1490)
T TIGR01271 1191 GGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS 1270 (1490)
T ss_pred cccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 113456799999999999999999877889999999999999999999999999999999999998
Q ss_pred CCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----
Q 000680 1269 PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS---- 1344 (1354)
Q Consensus 1269 ~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt---- 1344 (1354)
++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|||+||++|+++++|.++|+||||
T Consensus 1271 -~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e 1349 (1490)
T TIGR01271 1271 -TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD 1349 (1490)
T ss_pred -CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccccccccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccc
Q 000680 1345 SGKLFSAA 1352 (1354)
Q Consensus 1345 ~G~n~s~~ 1352 (1354)
+|.|||.|
T Consensus 1350 ~G~nLSgG 1357 (1490)
T TIGR01271 1350 GGYVLSNG 1357 (1490)
T ss_pred CCCcCCHH
Confidence 68899976
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-165 Score=1673.15 Aligned_cols=1153 Identities=29% Similarity=0.448 Sum_probs=979.8
Q ss_pred CCCCccCChhHHHHHHhHHHHHHhhcCCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhc-----------------
Q 000680 197 QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENN----------------- 259 (1354)
Q Consensus 197 ~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~----------------- 259 (1354)
+.||++|||+.++++.|++|.+.++.|..|+.+|||+...+.|+-+...++.+..++...+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1560)
T PTZ00243 59 PVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDAS 138 (1560)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecccc
Confidence 479999999999999999999999999999999999999999997777666655433221100
Q ss_pred -------------------------------C------------------------------------------------
Q 000680 260 -------------------------------S------------------------------------------------ 260 (1354)
Q Consensus 260 -------------------------------~------------------------------------------------ 260 (1354)
+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (1560)
T PTZ00243 139 SRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSSTG 218 (1560)
T ss_pred ccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecccc
Confidence 0
Q ss_pred ---------CCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHH
Q 000680 261 ---------NNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVE 331 (1354)
Q Consensus 261 ---------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~ 331 (1354)
+++..+++++++++|++.++..++++++.+++.+++|++++.+++|+++++.....|+.++++++++.+++
T Consensus 219 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~~ 298 (1560)
T PTZ00243 219 SVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLIQ 298 (1560)
T ss_pred cccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH
Confidence 01112589999999999999999999999999999999999999999765545556888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC--CCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000680 332 SFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRK--KHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAI 409 (1354)
Q Consensus 332 ~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~--~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~ 409 (1354)
+++.++|+|...+.|+++|++|.+.+|+|+++++..+.. +.++|+++|+|++|++++.+++.++|.+|.+|+++++++
T Consensus 299 ~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~~ 378 (1560)
T PTZ00243 299 SVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSI 378 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999886654 568999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHH
Q 000680 410 GVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKE 489 (1354)
Q Consensus 410 ~~L~~~lG~~~l~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~E 489 (1354)
++||.++||++++|++++++++|++.++++.+.++++++|+++|+|++.++|+++|||+||+||||+.|.+++++.|++|
T Consensus 379 ~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~E 458 (1560)
T PTZ00243 379 LLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARE 458 (1560)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 490 FKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569 (1354)
Q Consensus 490 l~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri 569 (1354)
++.+++..+..++..++++.+|.++++++|++|++.+ ++||++++||++++|+.++.|+.++|..++.+.++++|++||
T Consensus 459 l~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g-~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI 537 (1560)
T PTZ00243 459 LRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLG-HELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRI 537 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888889999999999999998886 789999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCcch---h-hh-------c------------------c-----------------------------ccCC
Q 000680 570 NAFLLDHELNNDD---V-RR-------I------------------S-----------------------------LQKS 591 (1354)
Q Consensus 570 ~~fL~~~e~~~~~---~-~~-------~------------------~-----------------------------~~~~ 591 (1354)
++||..+|.+... . +. . + ....
T Consensus 538 ~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1560)
T PTZ00243 538 STFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHP 617 (1560)
T ss_pred HHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccc
Confidence 9999876632100 0 00 0 0 0001
Q ss_pred CCcEEEEeeEEEeCCC-------------------------------------CCCCcceeeeEEeeCCeEEEEECCCCC
Q 000680 592 DRSVKIQEGNFSWDPE-------------------------------------LAIPTLRGVNLDIKWAQKIAVCGSVGA 634 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~-------------------------------------~~~~~l~~i~l~i~~G~~~~ivG~~Gs 634 (1354)
...+.++|++|+|+.. .++++|+|+||+|++||+++|+|||||
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGs 697 (1560)
T PTZ00243 618 SPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGS 697 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCC
Confidence 1245667776665310 124589999999999999999999999
Q ss_pred CHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCccccc
Q 000680 635 GKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714 (1354)
Q Consensus 635 GKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig 714 (1354)
||||||++|+|+++|++|+|.++++|||+||+||++++|++|||.|+.++++++|++++++|++++|++.+|+|++|.+|
T Consensus 698 GKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~ 777 (1560)
T PTZ00243 698 GKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIG 777 (1560)
T ss_pred cHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhc
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCC
Q 000680 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1354)
Q Consensus 715 ~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 794 (1354)
++|.+|||||||||+||||+|++||+||||||||+||++++++++++++.+..+|+|+|+|||+++.++.||+|++|++|
T Consensus 778 ~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G 857 (1560)
T PTZ00243 778 EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDG 857 (1560)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999998877666799999999999999999999999999
Q ss_pred eEEEecChHHHHhcCchHHHHHHHhhhhcccCCCCCCCCCCCccccccccCCCCCCCCCCCCCC-CCccccccccccCCc
Q 000680 795 QITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRK-ESSEGEISVKGLTQL 873 (1354)
Q Consensus 795 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 873 (1354)
+++++|+++++.+.+ .+.++........+..+..........+. .................. ...+.........++
T Consensus 858 ~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 935 (1560)
T PTZ00243 858 RVEFSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVAEVDA-APGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRL 935 (1560)
T ss_pred EEEEecCHHHHHhCh-HHHHHHHhhcccccccccccccccccccc-cccccccccccccccccccccccccccccccchh
Confidence 999999999998653 45555433211100000000000000000 000000000000000000 000000000111345
Q ss_pred chHHHHhhccccHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC-CCcchHHHHHHHHHHHHHHHHH
Q 000680 874 TEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP-KITSGILIGVYAGVSTASAVFV 952 (1354)
Q Consensus 874 ~~~e~~~~g~v~~~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~~~~~~iy~~l~~~~~i~~ 952 (1354)
.++|+++.|.++|++|+.|++..++...+++.+++.+....+..+.++|++.|.+.. ......|+++|+++.++..++.
T Consensus 936 ~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~~~~~~ 1015 (1560)
T PTZ00243 936 MTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFSV 1015 (1560)
T ss_pred hhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHHHHHH
Confidence 567788899999999999999876655544444445555667778899999998643 2234567888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 953 YFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTF 1032 (1354)
Q Consensus 953 ~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~ 1032 (1354)
+++.+.....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++
T Consensus 1016 ~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~ 1095 (1560)
T PTZ00243 1016 PLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSA 1095 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHH
Q 000680 1033 VTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFF 1112 (1354)
Q Consensus 1033 ~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~ 1112 (1354)
.+|.++++++|+.++++++.++|.+..|+++|+++.+++|++++++|+++|+.|||+|+++++|.+++.+..|.+.+..+
T Consensus 1096 ~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~ 1175 (1560)
T PTZ00243 1096 SQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSY 1175 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 99988877888887888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000680 1113 HTNGVMEWLILRVEALQNLTLFTAALFLV---LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189 (1354)
Q Consensus 1113 ~~~~~~~wl~~~l~~l~~~~~~~~~~~~v---l~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e 1189 (1354)
.....++|+..++++++.+.+++++++++ ....+.+++|.++++++|+.++..++.++++.++++|+.++|+|||.+
T Consensus 1176 ~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~ 1255 (1560)
T PTZ00243 1176 LENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLY 1255 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776555444332 223456789999999999999999999999999999999999999999
Q ss_pred hhcC-CCCCCCCC-----------------------CCCCCC---CCCCCcceEEEEEEEEEeCCCCCCccccceEEeeC
Q 000680 1190 FMHI-PPEPPAIV-----------------------EDKRPP---SSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSE 1242 (1354)
Q Consensus 1190 ~~~~-~~E~~~~~-----------------------~~~~~~---~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~ 1242 (1354)
|++. |+|+.... +...++ +.||..|.|+|+||+|+|+++.++|||||||+|+|
T Consensus 1256 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~ 1335 (1560)
T PTZ00243 1256 YTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAP 1335 (1560)
T ss_pred HHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECC
Confidence 9963 44321100 011122 23567799999999999998877899999999999
Q ss_pred CcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCCCCCHHHH
Q 000680 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEI 1322 (1354)
Q Consensus 1243 GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI 1322 (1354)
|||||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+||
T Consensus 1336 GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI 1415 (1560)
T PTZ00243 1336 REKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEV 1415 (1560)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1323 WKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1323 ~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+||++|+++++|.++|+|||| +|.|+|.|
T Consensus 1416 ~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgG 1449 (1560)
T PTZ00243 1416 WAALELVGLRERVASESEGIDSRVLEGGSNYSVG 1449 (1560)
T ss_pred HHHHHHCCChHHHhhCcccccccccCCcCcCCHH
Confidence 9999999999999999999998 58899976
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-122 Score=1150.79 Aligned_cols=1064 Identities=21% Similarity=0.255 Sum_probs=783.5
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCC--cch----hHHHHHHHHHHHHHHHHH-HHH
Q 000680 266 LVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN---RGE--ENL----QEGLSIVGCLIITKVVES-FTQ 335 (1354)
Q Consensus 266 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~---~~~--~~~----~~g~~~~~~l~~~~~~~~-~~~ 335 (1354)
++++....+-+.++++..+..+...+.+..+|++...+.+..+ ... ... ..++.+. .+.+..++.+ +..
T Consensus 14 ~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~-~lg~~~~~~~~~q~ 92 (1228)
T KOG0055|consen 14 SFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFV-YLGVGVFISGFIQV 92 (1228)
T ss_pred chHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3444444455778888888888999999999988765443221 111 111 1122222 2222223333 335
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-----HHHHHHHHHHHHHHHHH
Q 000680 336 RHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-----WFHLTWSLALQLFLAIG 410 (1354)
Q Consensus 336 ~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-----~~~~~w~~plqi~~~~~ 410 (1354)
.+|.+.+.|...|+|..+..++.||...+.+. +++|++++-|+.|+++|.|.+. ++|.+-....-++++++
T Consensus 93 ~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~----~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~ 168 (1228)
T KOG0055|consen 93 SCWMRTGERQTARIRSKYLKAILRQDIGWFDT----NSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFY 168 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccceeec----ccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999874 3459999999999999887543 45555444444555554
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHH-HHHHH
Q 000680 411 VLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES-RREKE 489 (1354)
Q Consensus 411 ~L~~~lG~~~l~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~-~R~~E 489 (1354)
..| .+.. +++.+.-++......+++.+.+...+.++...+.-++++|++++||+|-.|+-|+...++-.+ +...+
T Consensus 169 ~~W-~Ltl---v~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~ 244 (1228)
T KOG0055|consen 169 YGW-KLTL---VMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENAL 244 (1228)
T ss_pred HHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHH
Confidence 433 3333 333322223333455678888888888888889999999999999999999999876544433 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 490 FKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569 (1354)
Q Consensus 490 l~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri 569 (1354)
--.+++..+......+.+++.-....+..|.+..++..+..+++++|+++...-.-...|.+..+.+..+.+|+++..+|
T Consensus 245 k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I 324 (1228)
T KOG0055|consen 245 KFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRI 324 (1228)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHH
Confidence 11222322222222233333333334455555444444789999999998877777888999999999999999999999
Q ss_pred HHHhcc-cCCCcchhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc
Q 000680 570 NAFLLD-HELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 570 ~~fL~~-~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~ 648 (1354)
.+-++. ++.++....+.......+.|+++|+.|+||.+++.++|+|+||+|++|+.++||||+||||||++++|.|+++
T Consensus 325 ~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd 404 (1228)
T KOG0055|consen 325 FETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD 404 (1228)
T ss_pred HHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 998864 3333322122233446789999999999999988899999999999999999999999999999999999999
Q ss_pred CCCcEEEEcC-------------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCccccc
Q 000680 649 KISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIG 714 (1354)
Q Consensus 649 ~~~G~i~~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig 714 (1354)
|++|+|.++| +||.|+|+|.+|++||+|||.||+| ..+++..++++.....+.+..+|+|++|.+|
T Consensus 405 P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vg 484 (1228)
T KOG0055|consen 405 PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVG 484 (1228)
T ss_pred CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhccccc
Confidence 9999999998 5999999999999999999999986 4688899999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCC
Q 000680 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1354)
Q Consensus 715 ~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 794 (1354)
|+|.+|||||||||||||||.+||+||||||||||||++.++.+ ++.++...+|+|.|+|+|+++.+++||+|++|++|
T Consensus 485 e~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~V-q~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G 563 (1228)
T KOG0055|consen 485 ERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVV-QEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEG 563 (1228)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHH-HHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECC
Confidence 99999999999999999999999999999999999999998764 66778888999999999999999999999999999
Q ss_pred eEEEecChHHHHhcCchHHHHHHHhhhhcccCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCccccccccccCCcc
Q 000680 795 QITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLT 874 (1354)
Q Consensus 795 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (1354)
+|+|.|+|+||++.++.|.++++.++......+.+++++. .+..+....... ......+.. ........+...+..
T Consensus 564 ~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~--~~~~~~s~~~s~-~~~~~~~~~-~~~~~~~~~~~~e~~ 639 (1228)
T KOG0055|consen 564 KIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESL--KEERSRSLKSSS-SSPSLSRGS-NRSNLLSVKPEGEDP 639 (1228)
T ss_pred EEEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccch--hhhhhhcccccc-ccccccCCc-ccccccccccccccc
Confidence 9999999999999999999999876543321110000000 000000000000 000000000 000000000000000
Q ss_pred hHHHHhhccccHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhHHHHHHhhhc----CC-C---CcchHHHHHHHHHH
Q 000680 875 EDEEMEIGDVGWKPFMDYLNVSK-GMSLLCLGVLAQSGFVGLQAAATYWLAYAIQ----IP-K---ITSGILIGVYAGVS 945 (1354)
Q Consensus 875 ~~e~~~~g~v~~~~y~~y~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~----~~-~---~~~~~~~~iy~~l~ 945 (1354)
++...+.. ....+++.++..+ .|..+++.+++.++..+......+.++...+ .+ + .....+..+|++++
T Consensus 640 ~~~~~~~~--~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~ 717 (1228)
T KOG0055|consen 640 EEPVSEED--EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLG 717 (1228)
T ss_pred cccccccc--ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 00000001 1223455555444 3555556666655555555555555554332 11 1 11234778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc--cCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHH
Q 000680 946 TASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023 (1354)
Q Consensus 946 ~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~--~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~ 1023 (1354)
+...++.+++.+++...|.+..+++|..+|+++++.++.|||. +. |+|.+|+++|...+...+...+..+++++..+
T Consensus 718 ~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~ 796 (1228)
T KOG0055|consen 718 IVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAV 796 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 45 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHH
Q 000680 1024 LAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKL 1103 (1354)
Q Consensus 1024 i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~ 1103 (1354)
+..+++.++.+|+++++++...|++......+.+......+..............|++++++||++|+.|++|.+.|.+.
T Consensus 797 ~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~ 876 (1228)
T KOG0055|consen 797 IIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEE 876 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999887764444444333333333222333333334445678899999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 1104 VDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF----LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLAN 1179 (1354)
Q Consensus 1104 ~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~----~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~ 1179 (1354)
++...+...... .|-++...+-.++..+.-++. .+++.+|.+++..+-..+.-...-...+........++-+
T Consensus 877 l~~p~~~~~~~~---~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~k 953 (1228)
T KOG0055|consen 877 LEKPRKSSFKRG---LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISK 953 (1228)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHH
Confidence 988777655433 344444444344433333332 3566788888887766555444444556667778889999
Q ss_pred HhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEe--CCCCCCccccceEEeeCCcEEEEECCCCccHH
Q 000680 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKT 1257 (1354)
Q Consensus 1180 ~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y--~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKS 1257 (1354)
+..|+.+|+++++.+++-+...+.. ....+.+|+|+|+||+|+| ||+. +||+|+|++|++||+||+||+||||||
T Consensus 954 a~~Aa~~iF~i~dr~~~i~~~~~~~--~~~~~~~G~I~~~~V~F~YPsRP~~-~Il~~l~l~i~~GqTvALVG~SGsGKS 1030 (1228)
T KOG0055|consen 954 AKIAAGSIFEILDRKPTIDPDSTSG--GKLPNVKGDIEFRNVSFAYPTRPDV-PVLNNLSLSIRAGQTVALVGPSGSGKS 1030 (1228)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCC--CccccceeEEEEeeeEeeCCCCCCc-hhhcCCcEEecCCCEEEEECCCCCCHH
Confidence 9999999999998876432211111 1112468999999999999 4554 499999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCC-CCCCHHHHHHHHHHcCCchHHh
Q 000680 1258 TLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTIS 1336 (1354)
Q Consensus 1258 TL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~AL~~a~l~~~I~ 1336 (1354)
|++.+|.|||||++|.|.|||+||++++++.||++|++|.|||+||++||||||... .+.|++||.+|++.|++|+||.
T Consensus 1031 TvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~ 1110 (1228)
T KOG0055|consen 1031 TVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFIS 1110 (1228)
T ss_pred HHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHh
Confidence 999999999999999999999999999999999999999999999999999999866 3479999999999999999999
Q ss_pred cCCCCcCCC----Ccccccc
Q 000680 1337 SLPNKLDSS----GKLFSAA 1352 (1354)
Q Consensus 1337 ~Lp~gldt~----G~n~s~~ 1352 (1354)
+||+||||. |.++|-|
T Consensus 1111 sLP~GyDT~vGerG~QLSGG 1130 (1228)
T KOG0055|consen 1111 SLPQGYDTRVGERGVQLSGG 1130 (1228)
T ss_pred cCcCcccCccCcccCcCCch
Confidence 999999993 6666643
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-111 Score=1129.17 Aligned_cols=1069 Identities=17% Similarity=0.158 Sum_probs=734.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 274 VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSAL 353 (1354)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l 353 (1354)
.+++.+++..++.++..++..+.|+++..+++-+.... .... ++..+++..++..++...+.+...+++.++-..+
T Consensus 57 ~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~-~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 132 (1466)
T PTZ00265 57 SHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE-NVND---IIFSLVLIGIFQFILSFISSFCMDVVTTKILKTL 132 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666777777777776442111 1111 1111112222222222222233445555555555
Q ss_pred HHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHH
Q 000680 354 MVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLFLI 429 (1354)
Q Consensus 354 ~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~v~~i 429 (1354)
...+|++.++++..-.+....|++.|.++.|++.+.+.+. .+..+...++.++.++++++ |.+.+.+++.+++
T Consensus 133 R~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl--- 209 (1466)
T PTZ00265 133 KLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPL--- 209 (1466)
T ss_pred HHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---
Confidence 5666777777665444556789999999999999887543 34444455555555555544 3344433333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000680 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT-VIYW 508 (1354)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~-~~~~ 508 (1354)
++.+...+.+++++..++..+..++..+.+.|.++|||+||.|+-|+.+.++..+..+...+...+.....++.. +...
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~ 289 (1466)
T PTZ00265 210 IYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMING 289 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233345567777778888888889999999999999999999999998888776544443333233322222221 1111
Q ss_pred HHHHHHHHHHH-HHHHHhCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Q 000680 509 MSPTIISSVIF-LGCALTGS-------APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN 580 (1354)
Q Consensus 509 ~~p~~v~~~~f-~~~~l~~~-------~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~ 580 (1354)
+.-....++.+ +++.+..+ +.++++.+++.+........++..+...+..+.++.+|.+||.+.++.++..+
T Consensus 290 ~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~ 369 (1466)
T PTZ00265 290 FILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVE 369 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 11111222223 33333332 35788888776655444445556666678899999999999999997643211
Q ss_pred chhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc-C-
Q 000680 581 DDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-G- 658 (1354)
Q Consensus 581 ~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~-g- 658 (1354)
...+....+ ....|+++|++|+|+.+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |
T Consensus 370 ~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~ 448 (1466)
T PTZ00265 370 NNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSH 448 (1466)
T ss_pred CCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCc
Confidence 111111111 1237999999999986544579999999999999999999999999999999999999999999994 3
Q ss_pred ------------eEEEEeCCCCCCCCcHHHHHhcCCC-------------------------------------------
Q 000680 659 ------------SIAYVSQTSWIQSGSIRDNILYGKP------------------------------------------- 683 (1354)
Q Consensus 659 ------------~i~yv~Q~~~~~~~ti~eni~~g~~------------------------------------------- 683 (1354)
+||||+|+|.++++||+|||.+|..
T Consensus 449 ~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 449 NLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred chhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 3899999999999999999999741
Q ss_pred ---------------CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000680 684 ---------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1354)
Q Consensus 684 ---------------~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1354)
.++++..++++.+++++.++.+|+|.+|.+|++|.+|||||||||+||||++++|+|+|||||||
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTS 608 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATS 608 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 23356778888899999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCC---------------------------------
Q 000680 749 AVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGG--------------------------------- 794 (1354)
Q Consensus 749 ~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G--------------------------------- 794 (1354)
+||+++++.+.+.+.+... +|+|+|+|||+++.+..||+|++|++|
T Consensus 609 aLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1466)
T PTZ00265 609 SLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNN 688 (1466)
T ss_pred ccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccccc
Confidence 9999999998776554433 589999999999999889999999986
Q ss_pred --------------eEEEecChHHHHh-cCchHHHHHHHhhhhcccCC-C-CCCCCCCCcccccccc-CCCCCCCCC---
Q 000680 795 --------------QITQSGNYQELLL-AGTAFEQLVNAHRDAITGLG-P-LDNAGQGGAEKVEKGR-TARPEEPNG--- 853 (1354)
Q Consensus 795 --------------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~-~~~~~~~~~--- 853 (1354)
+|+|+|+++|+++ .++.|..+++.+........ . .+.............. ....++...
T Consensus 689 ~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (1466)
T PTZ00265 689 NNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSK 768 (1466)
T ss_pred cccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccccccccccccccccc
Confidence 5999999999998 57888888865432211100 0 0000000000000000 000000000
Q ss_pred --CCC-C--CCCcc--cc-ccccccCCcchHHHH----hhccccHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHH
Q 000680 854 --IYP-R--KESSE--GE-ISVKGLTQLTEDEEM----EIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATY 921 (1354)
Q Consensus 854 --~~~-~--~~~~~--~~-~~~~~~~~~~~~e~~----~~g~v~~~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 921 (1354)
... . ..... .+ .+.....+....++. ......+..+++++...... +++.+++.++..++..+.++
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 846 (1466)
T PTZ00265 769 HENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKD--VTIIALSILVAGGLYPVFAL 846 (1466)
T ss_pred ccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00000 00 000000000000000 00011223334444332222 22222233333444555555
Q ss_pred HHHhhhcC----CC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc--cCcch
Q 000680 922 WLAYAIQI----PK--ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGR 993 (1354)
Q Consensus 922 wl~~~~~~----~~--~~~~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~--~p~G~ 993 (1354)
.++.+++. .. .....+.+++++++++..++.+++.++..+.+.+...++|.+++++++++|++|||+ +++|+
T Consensus 847 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~ 926 (1466)
T PTZ00265 847 LYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGL 926 (1466)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHH
Confidence 55554431 10 012245566667777888888999999999999999999999999999999999996 88999
Q ss_pred HHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH------
Q 000680 994 ILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIA--TARELIRI------ 1065 (1354)
Q Consensus 994 IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~--~sr~l~rl------ 1065 (1354)
+++|+++|++.+...+...+..++..++.+++.++++++.+|.++++++|++++.........+ ..++.++.
T Consensus 927 l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1466)
T PTZ00265 927 LSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPG 1006 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999988999999999999999999999999887766554433222211111 11111111
Q ss_pred -------HhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000680 1066 -------NGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT-AA 1137 (1354)
Q Consensus 1066 -------~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~-~~ 1137 (1354)
+.+..+...+.++|+++|++|||+|+.|+++.+++.+..+...+..........++....+.+..+..++ ..
T Consensus 1007 ~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1086 (1466)
T PTZ00265 1007 TVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYW 1086 (1466)
T ss_pred cccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222455678999999999999999999999999999998877766655554444444444443332222 23
Q ss_pred HHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCC-CCCCCCcceE
Q 000680 1138 LFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRP-PSSWPFKGRI 1216 (1354)
Q Consensus 1138 ~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~-~~~wp~~G~I 1216 (1354)
+.+.++..|.++.|.+..++.+.+....++..+...+.+++.+..|.+|+.++++.+++.+...+...+ +...+..|.|
T Consensus 1087 ~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I 1166 (1466)
T PTZ00265 1087 FGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKI 1166 (1466)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceE
Confidence 334556789999998888776655555567778889999999999999999999876543211111111 0112346899
Q ss_pred EEEEEEEEeCCC-CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCC--------------------------
Q 000680 1217 ELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-------------------------- 1269 (1354)
Q Consensus 1217 ~f~nVsf~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~-------------------------- 1269 (1354)
+|+||+|+|++. ..+||+|+||+|+|||+|||||+||||||||+++|.|||+|
T Consensus 1167 ~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 (1466)
T PTZ00265 1167 EIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDE 1246 (1466)
T ss_pred EEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccc
Confidence 999999999632 23699999999999999999999999999999999999999
Q ss_pred ----------------------------CCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHH
Q 000680 1270 ----------------------------AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDD 1320 (1354)
Q Consensus 1270 ----------------------------~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDe 1320 (1354)
++|+|+|||+||+++++++||++|++|||||+||+|||||||.... +++||
T Consensus 1247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~e 1326 (1466)
T PTZ00265 1247 EQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRE 1326 (1466)
T ss_pred ccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHH
Confidence 6999999999999999999999999999999999999999997653 58999
Q ss_pred HHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1321 EIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1321 eI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
||++|++.|+++|||.+||+|||| .|.++|-|
T Consensus 1327 eI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGG 1362 (1466)
T PTZ00265 1327 DVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGG 1362 (1466)
T ss_pred HHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHH
Confidence 999999999999999999999999 47788754
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-69 Score=683.84 Aligned_cols=542 Identities=21% Similarity=0.256 Sum_probs=420.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1354)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 348 (1354)
+...+.+++.+++..++.++..++..+.|+++..+++....+..+....+.+++++++..++..++.....+...+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (588)
T PRK11174 14 KQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQH 93 (588)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888888888999999999999999999886431111112222333344445555566555555667788999
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHH
Q 000680 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGL 424 (1354)
Q Consensus 349 ir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl 424 (1354)
+...+...+|+|.++++....++.++|+++|.++.|++++.++.. .+..++...+.+++++++++ +.+++.+++.+
T Consensus 94 ~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~ 173 (588)
T PRK11174 94 IRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTA 173 (588)
T ss_pred HHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998777788999999999999999998653 45555655555555554443 33343333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000680 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI----ESRREKEFKWLSEAQLRK 500 (1354)
Q Consensus 425 ~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i----~~~R~~El~~l~~~~~~~ 500 (1354)
+ +...+...+.++.++.+++.++..++..+.+.|.++|+++||.|+||+.+.++. ++.|+.+.+..+......
T Consensus 174 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (588)
T PRK11174 174 P---LIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSS 250 (588)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222233456778888888999999999999999999999999999999876655 556666655544433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000680 501 AYGTVIYWMSPTIISSVIFLGCALTGS-------APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573 (1354)
Q Consensus 501 ~~~~~~~~~~p~~v~~~~f~~~~l~~~-------~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL 573 (1354)
.+..++..+ +. +.++.++++.+.+. ..+++..+|.++.+...+..|+..++..+..+.++++|.+||.+++
T Consensus 251 ~~~~~~~~~-~~-~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 328 (588)
T PRK11174 251 AVLEFFASI-SI-ALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFL 328 (588)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222222 11 12223334433331 1234445566666777788999999999999999999999999999
Q ss_pred cccCCCcchhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcE
Q 000680 574 LDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1354)
Q Consensus 574 ~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~ 653 (1354)
+.++.++.......+....+.|+++|++|.|+++ +++|+|+||+|++||.++|+||+|||||||+++|+|++ |++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~ 405 (588)
T PRK11174 329 ETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS 405 (588)
T ss_pred cCCCcccCCCccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence 7665322111100111123469999999877643 57999999999999999999999999999999999999 99999
Q ss_pred EEEcC-------------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCC
Q 000680 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1354)
Q Consensus 654 i~~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~ 719 (1354)
|.++| +|+||||+|++|++||+|||.+|.+ .+++++.++++.|+++++++.+|+|++|.|||+|.+
T Consensus 406 I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~ 485 (588)
T PRK11174 406 LKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485 (588)
T ss_pred EEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCC
Confidence 99998 5999999999999999999999965 889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEe
Q 000680 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1354)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1354)
||||||||++||||+++||+|+||||||||||++++++|.+. +....+++|+|+|||+++.++.||+|++|++|+|+++
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~-l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~ 564 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA-LNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQ 564 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeec
Confidence 999999999999999999999999999999999999999864 4555678999999999999999999999999999999
Q ss_pred cChHHHHhcCchHHHHHHHh
Q 000680 800 GNYQELLLAGTAFEQLVNAH 819 (1354)
Q Consensus 800 g~~~~l~~~~~~~~~~~~~~ 819 (1354)
|+++|++++++.|.++...+
T Consensus 565 G~~~eL~~~~~~y~~l~~~q 584 (588)
T PRK11174 565 GDYAELSQAGGLFATLLAHR 584 (588)
T ss_pred CCHHHHHhcchHHHHHHHHh
Confidence 99999999888888877543
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-68 Score=635.58 Aligned_cols=537 Identities=20% Similarity=0.301 Sum_probs=425.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc---chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE---NLQE-GLSIVGCLIITKVVESFTQRHCFFGSRRS 345 (1354)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~---~~~~-g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (1354)
.+.+..|+.+..+.++.++.......-|.++..+++-+...+. .... ...+.++.++..+...+-..++.+...|+
T Consensus 140 ~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv 219 (716)
T KOG0058|consen 140 GLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERV 219 (716)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777788888888888899999999998886654111 1122 23333333444444444456677788889
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHH
Q 000680 346 GMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGE-FPFWFHLTWSLALQLFLAIGVLF---GVVGLGAL 421 (1354)
Q Consensus 346 ~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~-~~~~~~~~w~~plqi~~~~~~L~---~~lG~~~l 421 (1354)
..|+|..+...+.++.....+. +.+||+++.++.|++.+.+ +..++....-..+|.+.++.+++ |.+....+
T Consensus 220 ~~rlR~~lF~sil~QdiaFFD~----nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~ 295 (716)
T KOG0058|consen 220 VARLRTDLFRSLLRQDIAFFDE----NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTL 295 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhhcc----CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 9999999988888888888764 5699999999999999988 45577777777788888877765 44544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH----HHHHHHHHHHHHHHHHHHHH
Q 000680 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK----FKSLIESRREKEFKWLSEAQ 497 (1354)
Q Consensus 422 ~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~----f~~~i~~~R~~El~~l~~~~ 497 (1354)
+.+++++ .+..++++++++..++..++..+-.+..+|.|++||+|+.|+-|+. |.+++++.++-- +|..
T Consensus 296 i~~P~v~---~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~----~k~a 368 (716)
T KOG0058|consen 296 IVVPIVA---LVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLS----KKEA 368 (716)
T ss_pred HHhcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHH----HHHH
Confidence 4333322 2345567778888888888888889999999999999999999974 444444443332 1211
Q ss_pred HHHHHHHHHH-HH-HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000680 498 LRKAYGTVIY-WM-SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1354)
Q Consensus 498 ~~~~~~~~~~-~~-~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~ 575 (1354)
+..++....+ .+ .-..++...++++ ++..+.+|++...+.+..-..+..++..+....+.++++..+.+|+.+|++.
T Consensus 369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~-Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr 447 (716)
T KOG0058|consen 369 VAYGIFFGSTNLLGNLAVLSILFYGGH-LVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDR 447 (716)
T ss_pred HHhhHhHhHHHHHHhHHHHHHHHhccc-hhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcc
Confidence 1111111000 01 1122333333444 4444889999988888888888999999999999999999999999999976
Q ss_pred cCCCcchhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Q 000680 576 HELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1354)
Q Consensus 576 ~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~ 655 (1354)
+..-+.+ ....+....+.|+|+|++|+|+.+++.++|+|+||+|+|||.||+|||+|+||||+.++|+.+|+|++|+|.
T Consensus 448 ~P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 448 KPRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred CCCCCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 4432222 111122467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcC-------------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 656 LYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 656 ~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
++| +||+|.|+|.+|++||+|||.+|.+ .+++++.++.+.+..++.+..+|+|++|.+||+|..||
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS 606 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS 606 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence 998 5999999999999999999999976 56788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecC
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1354)
|||||||||||||++||.||||||.|||||++.+..+ ++.+....+++|||+++|+++.+++||+|+|+++|+++|.|+
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lV-q~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLV-QEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHH-HHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 9999999999999999999999999999999997754 667777788899999999999999999999999999999999
Q ss_pred hHHHHhcC-chHHHHHHHhh
Q 000680 802 YQELLLAG-TAFEQLVNAHR 820 (1354)
Q Consensus 802 ~~~l~~~~-~~~~~~~~~~~ 820 (1354)
|+|+++.. +.|.++++.+.
T Consensus 686 h~eLl~~~~gly~~Lv~~q~ 705 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQL 705 (716)
T ss_pred HHHHhhCcccHHHHHHHHhc
Confidence 99999987 68888886653
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-65 Score=636.02 Aligned_cols=545 Identities=23% Similarity=0.333 Sum_probs=438.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1354)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1354)
.++..++-+++.+.-..+..++..+++++.|++.+.+++.+-.. .....-+.++.++.+..+++.++...-.+...+++
T Consensus 144 ~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~-~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~ 222 (709)
T COG2274 144 WFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPD-ASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLG 222 (709)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556777777777888888999999999999999865322 22233344555555556666655433345567889
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHH
Q 000680 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLA---IGVLFGVVGLGALPG 423 (1354)
Q Consensus 347 ~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~---~~~L~~~lG~~~l~g 423 (1354)
.|+...+...+|++.|+++..-..+.++|++++.+ .|.++|.++... ...+.++.+..+ +++++..-++-+++.
T Consensus 223 ~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~--~~l~~iiD~~~~~i~l~vm~~ys~~L~li~ 299 (709)
T COG2274 223 KRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTG--SILTLIIDLLFALIFLAVMFLYSWKLTLIV 299 (709)
T ss_pred HHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888889999999997 588888887552 223334433333 333444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG 503 (1354)
Q Consensus 424 l~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~ 503 (1354)
++.+.+.+.+..++.+.+++..++.++...++-+...|.++||++||..+-|+.+..+.++.-.+..+.-.+........
T Consensus 300 l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 379 (709)
T COG2274 300 LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALIL 379 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 55555555566777888899999999999999999999999999999999999999888877766665444433333222
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcch
Q 000680 504 TVIYWMSPTII-SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1354)
Q Consensus 504 ~~~~~~~p~~v-~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~ 582 (1354)
.......+.+. .++.+++..++-++.+|.+..+..-++......|+..+.+....+.+++++.+|+.+.++.+..++.+
T Consensus 380 ~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~ 459 (709)
T COG2274 380 NTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 22222222222 23344555555558999999999999999999999999999999999999999999999876543222
Q ss_pred hhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----
Q 000680 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1354)
Q Consensus 583 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---- 658 (1354)
......++.++.|+++|++|+|++++ +++|+|+|++|++||.+||+|+||||||||+|+|+|+++|++|+|.++|
T Consensus 460 ~~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 460 KTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred cccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 11223455678999999999999764 4799999999999999999999999999999999999999999999998
Q ss_pred ---------eEEEEeCCCCCCCCcHHHHHhcCCCCC-HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 659 ---------SIAYVSQTSWIQSGSIRDNILYGKPMD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 659 ---------~i~yv~Q~~~~~~~ti~eni~~g~~~~-~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
+|+||+|++.+|++||+|||.++.|.. .++..++++..+.++++..+|.|++|.+||+|.+||||||||+
T Consensus 539 ~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl 618 (709)
T COG2274 539 DIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL 618 (709)
T ss_pred hcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 599999999999999999999998854 4788888899999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
+||||++++|+|++|||||||||+++++.+.+.+. ...+|+|+|+|||+++.+++||+|+||++|+|+++|+++|+++.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~-~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHH-HHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 99999999999999999999999999999988764 44567999999999999999999999999999999999999999
Q ss_pred CchHHHHHH
Q 000680 809 GTAFEQLVN 817 (1354)
Q Consensus 809 ~~~~~~~~~ 817 (1354)
++.+.++..
T Consensus 698 ~g~y~~l~~ 706 (709)
T COG2274 698 GGLYARLYQ 706 (709)
T ss_pred cChHHHHHh
Confidence 888887764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-65 Score=654.51 Aligned_cols=542 Identities=23% Similarity=0.274 Sum_probs=422.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1354)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1354)
+++..++.+++.++...++.++..++..+.|+++..+++.+-... ....-+.+++++++..++..++.....+...+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA-DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLE 204 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777888888888899999999999999888653221 1122223333444444445555444455677889
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000680 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGL 424 (1354)
Q Consensus 347 ~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~--~~~~w~~plqi~~~~~~L~~~lG~~~l~gl 424 (1354)
.++...+...+|+|.++++.....+.++|+++|.++ |++.+.++... +..+...++ +++++++++..-++.+++.+
T Consensus 205 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l 282 (686)
T TIGR03797 205 TRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSWKLALVAV 282 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876566788999999997 88888875432 233333333 33444444444344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT 504 (1354)
Q Consensus 425 ~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~ 504 (1354)
+++.+...+...+.+..++..++.++..+++.+...|.++|+++||.++.|+.+.++.++.-++..+...+.........
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (686)
T TIGR03797 283 ALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556678888888999999999999999999999999999999998877776655544433333322222222
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchh
Q 000680 505 VIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1354)
Q Consensus 505 ~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~ 583 (1354)
.+......+ ..++.+.+..++.++.+|.+.+++...++..+..|+..++..+..+.+++++++|+.+++..++..+..
T Consensus 363 ~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~- 441 (686)
T TIGR03797 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA- 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC-
Confidence 211111111 222223333334447899999999999999999999999999999999999999999999765422111
Q ss_pred hhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000680 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1354)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----- 658 (1354)
...+....+.|+++|++|+|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 442 -~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 519 (686)
T TIGR03797 442 -KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAG 519 (686)
T ss_pred -cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCc
Confidence 11111234579999999999754 36799999999999999999999999999999999999999999999988
Q ss_pred --------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 --------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 --------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
+||||||+|+++++||+|||.++.+.+++++.++++.++++++++.+|+|.+|.+|++|.+||||||||++|
T Consensus 520 ~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRial 599 (686)
T TIGR03797 520 LDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLI 599 (686)
T ss_pred CCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence 499999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1354)
|||++++|++++||||||+||+++++++.+.+... ++|+|+|||+++.++.||+|++|++|+|++.|+++|++++++
T Consensus 600 ARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~ 676 (686)
T TIGR03797 600 ARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREG 676 (686)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999998876442 589999999999999999999999999999999999999888
Q ss_pred hHHHHHH
Q 000680 811 AFEQLVN 817 (1354)
Q Consensus 811 ~~~~~~~ 817 (1354)
.|.++.+
T Consensus 677 ~y~~l~~ 683 (686)
T TIGR03797 677 LFAQLAR 683 (686)
T ss_pred HHHHHHH
Confidence 8887764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-65 Score=658.75 Aligned_cols=540 Identities=19% Similarity=0.231 Sum_probs=425.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1354)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1354)
..++.+++.++...+..++..++..+.|+++..+++..-... .....+.++.++++..++..++.....+...+++.++
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (710)
T TIGR03796 147 RRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQG-RQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKL 225 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777778888888899999999999888543221 1112233333444444555555544556677889999
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000680 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1354)
Q Consensus 350 r~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~ 428 (1354)
...+...+|+|.++++....++.++|+++|.++.| +.+.++.. .+..+....+.+++.+++++..-++-+++.++.+.
T Consensus 226 ~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 304 (710)
T TIGR03796 226 AVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAA 304 (710)
T ss_pred HHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987666778999999999988 67777543 33334444444555555555443344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYW 508 (1354)
Q Consensus 429 i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~ 508 (1354)
+.+.+...+.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++.++++.+...+..........+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (710)
T TIGR03796 305 INVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPT 384 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566778888888888999999999999999999999999999999999988888777655554433332222111
Q ss_pred HHH-HHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchh---
Q 000680 509 MSP-TII-SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV--- 583 (1354)
Q Consensus 509 ~~p-~~v-~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~--- 583 (1354)
... ... .++.++++... ++.+|.+.+++.+.++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 385 ~i~~~~~~~il~~g~~~v~-~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~ 463 (710)
T TIGR03796 385 LLTSLNSALILVVGGLRVM-EGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEA 463 (710)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc
Confidence 111 111 12223333333 478999999999999999999999999999999999999999999997654321111
Q ss_pred -h-hccc-cCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--
Q 000680 584 -R-RISL-QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658 (1354)
Q Consensus 584 -~-~~~~-~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-- 658 (1354)
. .... +...+.|+++|++|+|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 464 ~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 542 (710)
T TIGR03796 464 PAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIP 542 (710)
T ss_pred cccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence 0 0111 2234679999999999864 35799999999999999999999999999999999999999999999987
Q ss_pred -----------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 -----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 -----------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
+|+||||+|+++++||+|||.++.+ .+++++.++++.++++++++.+|+|.+|.+||+|.+|||||||
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQ 622 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQ 622 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHH
Confidence 5999999999999999999998764 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHH
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
|++||||++++|++++||||||+||+++++++++.+.. +++|+|+|||+++.++.||+|++|++|+|++.|+++|++
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999999999999999999999887653 589999999999999999999999999999999999999
Q ss_pred hcCchHHHHH
Q 000680 807 LAGTAFEQLV 816 (1354)
Q Consensus 807 ~~~~~~~~~~ 816 (1354)
++++.|.++.
T Consensus 700 ~~~~~y~~l~ 709 (710)
T TIGR03796 700 AVGGAYARLI 709 (710)
T ss_pred HcCCcHHHHh
Confidence 8887777654
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-65 Score=652.66 Aligned_cols=535 Identities=21% Similarity=0.259 Sum_probs=399.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc--chhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000680 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE--NLQEGLSIVGCLII-TKVVESFTQRHCFFGSRRSGMR 348 (1354)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~--~~~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~r 348 (1354)
.+.+++.++...++.++..++..+.|++...+++.+..... .......+.+++.+ ..++..+....+.+...++..+
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777778888889999999999999987643221 11111111111111 1222222222233334444444
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000680 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1354)
Q Consensus 349 ir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~-~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~ 427 (1354)
+ ...+|+|.++.+...-++.++|+++|.++.|++.+.+.. ..+..+....+++++++++++..-++.+++.++.+
T Consensus 236 l----r~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~ 311 (711)
T TIGR00958 236 I----REDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINL 311 (711)
T ss_pred H----HHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4 456677777776554456789999999999999998754 35566666666676666655543222223222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIY 507 (1354)
Q Consensus 428 ~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~ 507 (1354)
.+...+...+.+..++..++.++..++..+...|.++|+++||.|++|+.+.++.++..++-.+..++.....+....+.
T Consensus 312 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (711)
T TIGR00958 312 PLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTT 391 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333445567777788888888899999999999999999999999998666555444332222222211111111111
Q ss_pred HHHH--HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhh
Q 000680 508 WMSP--TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR 585 (1354)
Q Consensus 508 ~~~p--~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~ 585 (1354)
.... ..+..+.++++... ++.+|.+.+++.+.++..+..|+..++..+..+.+++++.+|+.++++.++..++.. .
T Consensus 392 ~~~~~~~~~~il~~g~~lv~-~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~-~ 469 (711)
T TIGR00958 392 SVLGMLIQVLVLYYGGQLVL-TGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG-T 469 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC-C
Confidence 1111 11122223333333 478999999999999999999999999999999999999999999997654322111 1
Q ss_pred ccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------
Q 000680 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1354)
Q Consensus 586 ~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------- 658 (1354)
..+.+..+.|+++|++|+|++++++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 470 ~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~ 549 (711)
T TIGR00958 470 LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYD 549 (711)
T ss_pred CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC
Confidence 1112234579999999999865456899999999999999999999999999999999999999999999988
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|+||||+|+++++||||||.+|.+ .+++++.++++.++++++++.+|+|.+|.+|++|.+||||||||++||
T Consensus 550 ~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalA 629 (711)
T TIGR00958 550 HHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIA 629 (711)
T ss_pred HHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHH
Confidence 5999999999999999999999965 678899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCch
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 811 (1354)
||++++|+|++||||||+||+++++.+.+ ....+++|+|+|||+++.++.+|+|++|++|+|+++|+++|++++++.
T Consensus 630 RALl~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~ 706 (711)
T TIGR00958 630 RALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGC 706 (711)
T ss_pred HHHhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCc
Confidence 99999999999999999999999999877 223478999999999999999999999999999999999999988776
Q ss_pred HHHH
Q 000680 812 FEQL 815 (1354)
Q Consensus 812 ~~~~ 815 (1354)
|.++
T Consensus 707 y~~l 710 (711)
T TIGR00958 707 YKHL 710 (711)
T ss_pred hHhc
Confidence 6554
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-64 Score=647.53 Aligned_cols=534 Identities=22% Similarity=0.279 Sum_probs=421.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1354)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1354)
++...+.+++.+....++.++..++.++.|++++.+++..-... .....+.+++++++..++..++.....+...+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (694)
T TIGR03375 138 FWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ-AFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGK 216 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667888888888888888999999999999988653221 12222233333333444455544444456678899
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000680 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1354)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~--~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~ 425 (1354)
++...+...+|+|.++++... .+.++|++++.+ .|++.+.++... +..+...+. +++.+++++..-++.+++.++
T Consensus 217 ~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l~ 293 (694)
T TIGR03375 217 KADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGGPLVWVPLV 293 (694)
T ss_pred HHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999998765 567899999999 799999986542 233333333 333344444444444455554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTV 505 (1354)
Q Consensus 426 v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~ 505 (1354)
++.+.+.+...+.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..++..+...+..........
T Consensus 294 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (694)
T TIGR03375 294 AIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATN 373 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555667788888999999999999999999999999999999999999998888777766555544433332222
Q ss_pred HHHHHHHH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchh
Q 000680 506 IYWMSPTI--ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1354)
Q Consensus 506 ~~~~~p~~--v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~ 583 (1354)
+......+ +.++.++++.... +.+|.+..+..+.++..+..|+..++..+..+.+++++.+|+.++++.++..+...
T Consensus 374 ~~~~~~~~~~~~il~~g~~~v~~-g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~ 452 (694)
T TIGR03375 374 FAQFIQQLVSVAIVVVGVYLISD-GELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT 452 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 21111111 1122333444444 78999999999999999999999999999999999999999999997654322111
Q ss_pred hhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000680 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1354)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----- 658 (1354)
.....+...+.|+++|++|+|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 453 ~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~ 531 (694)
T TIGR03375 453 RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531 (694)
T ss_pred CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 111112234579999999999754 45799999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 --------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
+|+||||+|+++++||+|||.++.+ .+++++.++++.++++++++.+|+|.+|.+||+|.+||||||||++
T Consensus 532 ~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRla 611 (694)
T TIGR03375 532 IDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVA 611 (694)
T ss_pred CCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 5999999999999999999999986 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||||++++|++++||||||+||+++++++.+.+ ....+++|+|+|||+++.++.||+|++|++|++++.|+++|+++.
T Consensus 612 lARall~~p~iliLDE~Ts~LD~~te~~i~~~l-~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 612 LARALLRDPPILLLDEPTSAMDNRSEERFKDRL-KRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999998765 444578999999999999999999999999999999999999753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-63 Score=627.90 Aligned_cols=542 Identities=17% Similarity=0.212 Sum_probs=412.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1354)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir 350 (1354)
+++.+++.++...+..++..++..+.|+++..+++........ .....++..+++..++..++.....+...+++.++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 97 (582)
T PRK11176 19 TIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR-SVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVV 97 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666677777778888888887755432211 111111222222333333433333345567788888
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000680 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1354)
Q Consensus 351 ~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~-~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i 429 (1354)
..+...+|+|.++++...-.+.++|+++|.++.|++++.+.. ..+..++..++.+++++++++..-++.+++.++++.+
T Consensus 98 ~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l 177 (582)
T PRK11176 98 MTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPI 177 (582)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998777777889999999999999998753 3444555666666666666555433333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000680 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYW- 508 (1354)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~- 508 (1354)
...+...+.+.+++..++.++..++..+..+|.++|+++||.|++|+.+.++.++.-++-.+...+..........+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (582)
T PRK11176 178 VSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQL 257 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455677778888888899999999999999999999999999877766655444332222222222221111111
Q ss_pred HHHHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhcc
Q 000680 509 MSPTII-SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1354)
Q Consensus 509 ~~p~~v-~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~ 587 (1354)
+..+.. .++.++++.... +.++.+.+.+.++++..+..|+..+...+..+.+++.+.+|+.++++.++.++.. ...
T Consensus 258 ~~~~~~~~i~~~g~~~~~~-g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~--~~~ 334 (582)
T PRK11176 258 IASLALAFVLYAASFPSVM-DTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG--KRV 334 (582)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC--CcC
Confidence 111111 222333444444 6899999988888888899999999999999999999999999999765432211 111
Q ss_pred ccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000680 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1354)
Q Consensus 588 ~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------- 658 (1354)
.+...+.|+++|++|+|+++ ++++|+|+|++|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 335 ~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 413 (582)
T PRK11176 335 IERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLA 413 (582)
T ss_pred CCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHH
Confidence 12233469999999999754 45799999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEeCCCCCCCCcHHHHHhcCCC--CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 659 ----SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 659 ----~i~yv~Q~~~~~~~ti~eni~~g~~--~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
.|+|+||+|.++++|++|||.+|.+ +++++++++++.++++++++.+|+|.+|.+|++|.+||||||||++|||
T Consensus 414 ~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 414 SLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_pred HHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 4899999999999999999999853 7889999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchH
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 812 (1354)
|++++|++++|||||||||+++++.+++.+. ...+++|+|+|||+++.++.||+|++|++|+|++.|+++++++.++.|
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l~-~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y 572 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALD-ELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVY 572 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHH-HHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChH
Confidence 9999999999999999999999999887654 345679999999999999999999999999999999999999988888
Q ss_pred HHHHHH
Q 000680 813 EQLVNA 818 (1354)
Q Consensus 813 ~~~~~~ 818 (1354)
.++...
T Consensus 573 ~~l~~~ 578 (582)
T PRK11176 573 AQLHKM 578 (582)
T ss_pred HHHHHH
Confidence 888654
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-63 Score=639.39 Aligned_cols=536 Identities=24% Similarity=0.286 Sum_probs=411.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1354)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir 350 (1354)
..+.+++.++...+..++..++.++.|+++..+++..-... ....-+.+++++++..++..++.....+...+.+.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (708)
T TIGR01193 150 LITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLS 228 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777888888999999999999887543221 11112223333333344444444334456677888899
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000680 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1354)
Q Consensus 351 ~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~--~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~ 428 (1354)
..+...+|+|.++++....++.++|+++|.++ |++++.++... +..+...+. +++.+++++..-++.+++.++++.
T Consensus 229 ~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l~~~~ 306 (708)
T TIGR01193 229 IDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWI-LVIVGLFLVRQNMLLFLLSLLSIP 306 (708)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999876666788999999998 99998875432 122223333 333333343332222333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 000680 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ----LRKAYGT 504 (1354)
Q Consensus 429 i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~----~~~~~~~ 504 (1354)
+...+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++..++..+.-.+.. ....+..
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (708)
T TIGR01193 307 VYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKA 386 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556788888889999999999999999999999999999999888777665544333222222 2222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhh
Q 000680 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584 (1354)
Q Consensus 505 ~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~ 584 (1354)
++....+ +.++.++++... ++.+|.+.+++...++..+..|+..+...+..+.+++++.+|+.+++..++..+....
T Consensus 387 ~~~~~~~--i~il~~g~~lv~-~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~ 463 (708)
T TIGR01193 387 VTKLILN--VVILWTGAYLVM-RGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKK 463 (708)
T ss_pred HHHHHHH--HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence 2222222 122233344434 4789999999999999999999999999999999999999999999976532221111
Q ss_pred hccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000680 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1354)
Q Consensus 585 ~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------ 658 (1354)
....+...+.|+++|++|+|++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 464 ~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~ 541 (708)
T TIGR01193 464 RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI 541 (708)
T ss_pred ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHc
Confidence 1111223467999999999974 35799999999999999999999999999999999999999999999998
Q ss_pred -------eEEEEeCCCCCCCCcHHHHHhcCC--CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 -------SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 -------~i~yv~Q~~~~~~~ti~eni~~g~--~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
+||||||+|+++++||+|||.++. ..+++++.++++.++++++++.+|+|.+|.+|++|.+||||||||++
T Consensus 542 ~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRia 621 (708)
T TIGR01193 542 DRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIA 621 (708)
T ss_pred CHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHH
Confidence 499999999999999999999983 46788999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcC
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
||||++++|++++||||||+||+++++++.+.+.. .+++|+|+|||+++.+..||+|++|++|++++.|+++|+++.+
T Consensus 622 lARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~--~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~ 699 (708)
T TIGR01193 622 LARALLTDSKVLILDESTSNLDTITEKKIVNNLLN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRN 699 (708)
T ss_pred HHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH--hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcC
Confidence 99999999999999999999999999999887754 3689999999999999999999999999999999999999888
Q ss_pred chHHHHH
Q 000680 810 TAFEQLV 816 (1354)
Q Consensus 810 ~~~~~~~ 816 (1354)
+.|.++.
T Consensus 700 ~~y~~l~ 706 (708)
T TIGR01193 700 GFYASLI 706 (708)
T ss_pred CcHHHHh
Confidence 7777764
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-63 Score=623.04 Aligned_cols=543 Identities=19% Similarity=0.259 Sum_probs=421.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1354)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1354)
.+.+.+++.+++..++.++..++....|+++..+++..-... ....-+.+++.+++..++..+......+...+.+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (571)
T TIGR02203 7 SYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR-DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKV 85 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888888899999999888776432211 1111112222233333334444333344567788888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000680 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1354)
Q Consensus 350 r~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~ 428 (1354)
...+...+|+|.++.+....++.+.|++.|.++.|++++.++.. .+..++...+.+++++++++..-++.+++.++++.
T Consensus 86 ~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~ 165 (571)
T TIGR02203 86 VRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLP 165 (571)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88888899999999887766778899999999999999987553 44555555555666665555433333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYW 508 (1354)
Q Consensus 429 i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~ 508 (1354)
+.+.+...+.+..++..++..+..+++.+..+|.++|+++||.++.|+.+.++.++..++..+...+.....+....+..
T Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (571)
T TIGR02203 166 VLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQ 245 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556778888888999999999999999999999999999999988777776666554433333222222222111
Q ss_pred HHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhcc
Q 000680 509 MSP-TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1354)
Q Consensus 509 ~~p-~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~ 587 (1354)
... +...++.+.+..+..++.+|++.+++.+.++..+..|+..+...+..+.+++++.+|+.+++..++..+... .+
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~ 323 (571)
T TIGR02203 246 LIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT--RA 323 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CC
Confidence 111 112222223333333478999999999999999999999999999999999999999999997654322111 11
Q ss_pred ccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000680 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1354)
Q Consensus 588 ~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------- 658 (1354)
.....+.|+++|++|+|++. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~ 402 (571)
T TIGR02203 324 IERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLA 402 (571)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHH
Confidence 11234579999999999764 35799999999999999999999999999999999999999999999988
Q ss_pred ----eEEEEeCCCCCCCCcHHHHHhcCC--CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 659 ----SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 659 ----~i~yv~Q~~~~~~~ti~eni~~g~--~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
+++|+||+|+++++|++|||.++. +.+++++.++++.|+++++++.+|+|.+|.+|++|.+||||||||++|||
T Consensus 403 ~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 403 SLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIAR 482 (571)
T ss_pred HHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence 499999999999999999999985 48899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchH
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 812 (1354)
|++++|++++||||||+||+++++++.+.+. ...+++|+|+|||+.+.++.||+|++|++|++++.|+++++++.++.+
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~~~L~-~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~ 561 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAALE-RLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLY 561 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHH-HHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHH
Confidence 9999999999999999999999999987664 445789999999999999999999999999999999999999877777
Q ss_pred HHHHH
Q 000680 813 EQLVN 817 (1354)
Q Consensus 813 ~~~~~ 817 (1354)
.++.+
T Consensus 562 ~~~~~ 566 (571)
T TIGR02203 562 AQLHN 566 (571)
T ss_pred HHHHH
Confidence 76654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-63 Score=619.93 Aligned_cols=539 Identities=23% Similarity=0.327 Sum_probs=406.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCCcchh-HH--HHHHH-HHHHHHHHHHHHHHHHHH
Q 000680 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNY----SNRGEENLQ-EG--LSIVG-CLIITKVVESFTQRHCFF 340 (1354)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~----~~~~~~~~~-~g--~~~~~-~l~~~~~~~~~~~~~~~~ 340 (1354)
+-+++.-++++....+..+...+.+...|.+-..+... ...+++... .. |.++. ++.+...+..+ .++|+|
T Consensus 653 ~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~-~q~~~f 731 (1228)
T KOG0055|consen 653 WRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNF-LQHYFF 731 (1228)
T ss_pred HHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34555556666666666667777788888765544432 222221111 11 22221 22222222222 344444
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHH
Q 000680 341 --GSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-----WFHLTWSLALQLFLAIGVLF 413 (1354)
Q Consensus 341 --~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-----~~~~~w~~plqi~~~~~~L~ 413 (1354)
.+.++..|+|......+.++...+.+.. +++ |.+.+.+++|+..+...+. .+..+-+...-+++++++-
T Consensus 732 ~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~--~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~- 807 (1228)
T KOG0055|consen 732 GIAGEKLTKRLRSMMFRALLRQEVGWFDDP--ENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYG- 807 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCC--ccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5678888999887777777777777653 456 9999999999987654332 1222222223333333333
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHH----HHHHHHH
Q 000680 414 GVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI----ESRREKE 489 (1354)
Q Consensus 414 ~~lG~~~l~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i----~~~R~~E 489 (1354)
|.+++.+++-.+++++. .+...+.+.+..++.++..++--++.+|++.+||+||.|+-|+.|.+.. +..++.+
T Consensus 808 W~lalv~la~~Pll~~~---~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~ 884 (1228)
T KOG0055|consen 808 WRLALVVLATFPLLILS---GYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSS 884 (1228)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44554444444444433 3445777888899999999999999999999999999999998875544 3333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 490 FKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569 (1354)
Q Consensus 490 l~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri 569 (1354)
.+.-.......++...+ .-...++..+.+..++.++..++..+|.++.++..-...+.+.....+.+..|+.|..+|
T Consensus 885 ~~~~~i~gl~f~~sqs~---~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~i 961 (1228)
T KOG0055|consen 885 FKRGLISGLGFGFSQSL---LFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSI 961 (1228)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 33222222222222111 112223334455566667889999999998888777777777777788899999999999
Q ss_pred HHHhcccC-CCcchhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc
Q 000680 570 NAFLLDHE-LNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 570 ~~fL~~~e-~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~ 648 (1354)
.+.++.+. +++++......++-.+.|+++|++|+||.+++.++|+|+||+|++|+.+|+|||+||||||.+.+|.+.|+
T Consensus 962 F~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd 1041 (1228)
T KOG0055|consen 962 FEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD 1041 (1228)
T ss_pred HHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99998664 44432122223345678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcC-------------eEEEEeCCCCCCCCcHHHHHhcC-CCCCHHHHHHHHHHhccHHHHhcCCCCCccccc
Q 000680 649 KISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYG-KPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714 (1354)
Q Consensus 649 ~~~G~i~~~g-------------~i~yv~Q~~~~~~~ti~eni~~g-~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig 714 (1354)
|++|.|.++| ++|.|+|+|.+|+.||||||++| ...++++..++++.+..++.+..||+|++|.+|
T Consensus 1042 p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1042 PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVG 1121 (1228)
T ss_pred CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccC
Confidence 9999999998 59999999999999999999999 346889999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCC
Q 000680 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1354)
Q Consensus 715 ~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 794 (1354)
|+|.+||||||||||||||+++||+||||||.|||||.++++- .++.++....|+|+|+|+|+++.+++||.|+|++||
T Consensus 1122 erG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErv-VQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G 1200 (1228)
T KOG0055|consen 1122 ERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERV-VQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNG 1200 (1228)
T ss_pred cccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHH-HHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECC
Confidence 9999999999999999999999999999999999999999875 577888888999999999999999999999999999
Q ss_pred eEEEecChHHHHhcCchHHHHHHHh
Q 000680 795 QITQSGNYQELLLAGTAFEQLVNAH 819 (1354)
Q Consensus 795 ~i~~~g~~~~l~~~~~~~~~~~~~~ 819 (1354)
+|+|+|+|++|++.++.|.+++..+
T Consensus 1201 ~VvE~GtH~~L~~~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1201 KVVEQGTHDELLAKRGIYFRLVQLQ 1225 (1228)
T ss_pred EEEecccHHHHHhCCCchHHHhhhc
Confidence 9999999999999999999887543
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-62 Score=615.77 Aligned_cols=538 Identities=18% Similarity=0.251 Sum_probs=407.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRG-EENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1354)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~-~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1354)
..+.+++.++...++.++..++..+.|+++..+++-.... ..+......++.++++..++..++.....+...+.+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (592)
T PRK10790 17 YGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGV 96 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777788888888999999999888854322 111111112222233333344444444445667788888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHH
Q 000680 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLF---GVVGLGALPGLV 425 (1354)
Q Consensus 350 r~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~-~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~ 425 (1354)
...+...+|+|.++.+.....+.++|+++|.++.|++++.+.... +..+....+.+++++++++ +.+++..+++++
T Consensus 97 ~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~ 176 (592)
T PRK10790 97 VQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFP 176 (592)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999998776666788999999999999999875443 2233333333333333332 233333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 000680 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY--G 503 (1354)
Q Consensus 426 v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~--~ 503 (1354)
++ +.+.....+..++..++..+..++-.+..+|.++|+++||.|+.|+.+.++..+..++..+...+.....+. .
T Consensus 177 i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (592)
T PRK10790 177 AV---LVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLR 253 (592)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222334456666777777778888889999999999999999999999888877655433322111111111 1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcch
Q 000680 504 TVIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1354)
Q Consensus 504 ~~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~ 582 (1354)
.+.....-++ +.++.+.++ .. .+.++.+.++..+.++..+..|+..++.....+.+++.|.+||.++++.++.+...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~-~~-~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 331 (592)
T PRK10790 254 PLLSLFSALILCGLLMLFGF-SA-SGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN 331 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HH-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 1111111111 111122233 22 36799999999999999999999999999999999999999999999765432111
Q ss_pred hhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----
Q 000680 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1354)
Q Consensus 583 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---- 658 (1354)
. ......+.|+++|++|+|+++ +++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 332 -~--~~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~ 406 (592)
T PRK10790 332 -D--DRPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS 406 (592)
T ss_pred -C--ccCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhh
Confidence 1 111234579999999999743 5799999999999999999999999999999999999999999999987
Q ss_pred ---------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 ---------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 ---------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
+|+||||+|.+|++|++|||.++.+.++++..+++++++++++++.+|+|.+|.+|++|.+||||||||++
T Consensus 407 ~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia 486 (592)
T PRK10790 407 SLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486 (592)
T ss_pred hCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 49999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcC
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
||||++++|+|++||||||+||+++++.+.+.+. ...+++|+|+|||+++.++.+|+|++|++|++++.|+++|+++.+
T Consensus 487 lARaLl~~~~illlDEpts~LD~~t~~~i~~~l~-~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~ 565 (592)
T PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565 (592)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999999877654 444679999999999999999999999999999999999999988
Q ss_pred chHHHHHHHh
Q 000680 810 TAFEQLVNAH 819 (1354)
Q Consensus 810 ~~~~~~~~~~ 819 (1354)
+.|.++.+.+
T Consensus 566 ~~y~~l~~~~ 575 (592)
T PRK10790 566 GRYWQMYQLQ 575 (592)
T ss_pred CHHHHHHHHH
Confidence 8888887644
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-62 Score=615.02 Aligned_cols=542 Identities=20% Similarity=0.266 Sum_probs=412.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNY-SNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1354)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~-~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1354)
+.+.+.+++.+.+..++.++..++.++.|+++..+++. +.+.+. ..-..++..+++..++..+......+...+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (576)
T TIGR02204 10 WPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSS--GLLNRYFAFLLVVALVLALGTAARFYLVTWLGE 87 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777778888888999999999998886 322211 111112222222222333333344456678889
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHH
Q 000680 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPG 423 (1354)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~---~~lG~~~l~g 423 (1354)
++...+...+|+|.++.+.....+.+.|+++|.++.|++.+.++.. .+..+....+.+++++++++ +.+++.++++
T Consensus 88 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 167 (576)
T TIGR02204 88 RVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167 (576)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999877655667899999999999999987643 33344444444444444333 3344433332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG 503 (1354)
Q Consensus 424 l~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~ 503 (1354)
++++ +.+...+.+.+++..++.++..++..+...|.++|+++||.+++|+.+.++.++..++..+..++........
T Consensus 168 ~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 168 VPLV---LLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2223346777888888899999999999999999999999999999987777665554443333322221111
Q ss_pred HHHH-HHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Q 000680 504 TVIY-WMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1354)
Q Consensus 504 ~~~~-~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~ 581 (1354)
..+. .+.... +....++++.... +.+|.+.+++...++..+..|+..++..+..+.+++++++|+.+++..++..+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~-g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIA-GKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 1111 111111 2222233443344 789999999999999999999999999999999999999999999976432111
Q ss_pred hhhhcc-ccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--
Q 000680 582 DVRRIS-LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658 (1354)
Q Consensus 582 ~~~~~~-~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-- 658 (1354)
...... .....+.|+++|++|+|+++.++++|+|+||++++||.++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 324 PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred CCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 111111 11123569999999999864346799999999999999999999999999999999999999999999987
Q ss_pred -----------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 -----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 -----------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.++|+||+|+++++|++|||.++.+ .++++..++++.+++.++++.+|+|.+|.+|++|.+|||||||
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 4999999999999999999999875 5678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHH
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
|++||||++++|++++||||||+||+++++.+++.+.. ..+++|+|+|||+++.++.+|+|++|++|++++.|+++++.
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~-~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALET-LMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHH
Confidence 99999999999999999999999999999988776544 45789999999999999999999999999999999999999
Q ss_pred hcCchHHHHHH
Q 000680 807 LAGTAFEQLVN 817 (1354)
Q Consensus 807 ~~~~~~~~~~~ 817 (1354)
++++.|.++.+
T Consensus 563 ~~~~~~~~l~~ 573 (576)
T TIGR02204 563 AKGGLYARLAR 573 (576)
T ss_pred HcCChHHHHHh
Confidence 88887877653
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-64 Score=597.52 Aligned_cols=459 Identities=23% Similarity=0.315 Sum_probs=382.3
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcC-----CC-CcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI-----PK-ITSGILIGVYAGVSTASAVFVYFRSFFA 959 (1354)
Q Consensus 886 ~~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~-----~~-~~~~~~~~iy~~l~~~~~i~~~~~~~~~ 959 (1354)
++..+.|.+...+ .+...+.+.++.....+..+++++..++. .. ........+..++.++++++.+++.+++
T Consensus 135 ~~rl~~l~~~~~~--~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 135 LKRLLGLLKPEWK--WLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred HHHHHHHhchhHH--HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566554322 23333333333444455666665544332 11 1111234556677788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000680 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1354)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l 1039 (1354)
.+.+.+...++|.++|++++|+.++|||.+.+|+|+||+++|...+...++..+...+.+.++.++.+++|++.+|.+.+
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltl 292 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTL 292 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000680 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1354)
Q Consensus 1040 ~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1354)
+.+..+++...+.++|.+..|++.+..+++-+.......|.+++++|||+|+.|++..++|.+.+++..+..........
T Consensus 293 v~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~ 372 (716)
T KOG0058|consen 293 VTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYG 372 (716)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999877666544443333
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC
Q 000680 1120 WLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP 1198 (1354)
Q Consensus 1120 wl~~~l~~l~~~~~~~~-~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~ 1198 (1354)
.+....++.+++..+.+ .....++..|.+++|.+..++.|...+...+.++...++++.+...|.+|++||+|.+|.-+
T Consensus 373 ~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~ 452 (716)
T KOG0058|consen 373 IFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIP 452 (716)
T ss_pred HhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCC
Confidence 33333344444433333 33355677899999999999999999999999999999999999999999999999877644
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEEEEeC--CCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEE
Q 000680 1199 AIVEDKRPPSSWPFKGRIELRQLKIRYR--PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276 (1354)
Q Consensus 1199 ~~~~~~~~~~~wp~~G~I~f~nVsf~Y~--~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~I 1276 (1354)
.. +...|. ..+|.|+|+||+|+|+ |+. +||||+||+|+|||+||+||||||||||++++|.|||||++|+|++
T Consensus 453 ~~--G~~~p~--~~~G~IeF~~VsFaYP~Rp~~-~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 453 LT--GTLAPD--HLQGVIEFEDVSFAYPTRPDV-PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILL 527 (716)
T ss_pred CC--Cccccc--cccceEEEEEeeeecCCCCCc-hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 32 222222 4689999999999994 444 4999999999999999999999999999999999999999999999
Q ss_pred cCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCCC----Cccccc
Q 000680 1277 DGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSS----GKLFSA 1351 (1354)
Q Consensus 1277 DGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt~----G~n~s~ 1351 (1354)
||+||++++.+.||++||+|.|||+||+|||||||.+.. +.+||||.+|+++||.||||+++|+||||. |..+|-
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 999999999999999999999999999999999996432 589999999999999999999999999993 445553
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-61 Score=606.97 Aligned_cols=540 Identities=21% Similarity=0.254 Sum_probs=403.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN-RGEE--NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1354)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~-~~~~--~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1354)
+.+.+++.+++..++.++..++..+.|.++..+++-.. .+.. .....+..++++++..++..++.....+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777778888888899999999998887431 1110 00111111222323333444444334456678888
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHH
Q 000680 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPG 423 (1354)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~---~~lG~~~l~g 423 (1354)
++...+...+|+|.++++....++..+|++++.++.|++++.++.. .+..+....+.+++++++++ +.+++.++++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988777778899999999999999998654 34444444455554444443 3444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG 503 (1354)
Q Consensus 424 l~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~ 503 (1354)
++++.+++ ...+.+..++..++..+..++..+.+.|.++|+++||.|+.|+.+.++.++..++-.+.-.+.....+..
T Consensus 170 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 170 LLLLLLLL--PLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222 2345666777788888888999999999999999999999999887777665544333222222222221
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Q 000680 504 TV-IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRS-MGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1354)
Q Consensus 504 ~~-~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~-l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~ 581 (1354)
.. ...+....+.++.+.+..+.. +.++.+..++.+.+... ...|+..++..+..+.++++|.+||.++++.++..+.
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~~~-g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGGVG-GNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 11 111122222222333333343 67788876665554433 3468888899999999999999999999976432111
Q ss_pred hhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---
Q 000680 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658 (1354)
Q Consensus 582 ~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--- 658 (1354)
. +........+.|+++|++|+|+++ ++++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 327 ~-~~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i 404 (574)
T PRK11160 327 P-TTSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPI 404 (574)
T ss_pred C-cccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEh
Confidence 1 011111234579999999999753 34799999999999999999999999999999999999999999999987
Q ss_pred ----------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 ----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 ----------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
.|+||||+|+++++|++|||.++.+ .++++..++++.++++++++. |+|.+|.+||+|.+||||||||
T Consensus 405 ~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 405 ADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred hhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHH
Confidence 3999999999999999999999875 678899999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHh
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
++||||++++|++++||||||+||+++++.+.+.+. ...+++|+|++||+++.++.||+|++|++|++++.|+++|+++
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~-~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLA-EHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999887654 4457899999999999999999999999999999999999999
Q ss_pred cCchHHHHHH
Q 000680 808 AGTAFEQLVN 817 (1354)
Q Consensus 808 ~~~~~~~~~~ 817 (1354)
+++.|.++.+
T Consensus 563 ~~g~y~~l~~ 572 (574)
T PRK11160 563 QQGRYYQLKQ 572 (574)
T ss_pred cCcHHHHHHh
Confidence 9888887653
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-61 Score=605.00 Aligned_cols=526 Identities=21% Similarity=0.268 Sum_probs=398.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000680 287 LLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSS 366 (1354)
Q Consensus 287 ~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~ 366 (1354)
++..++..+.|+++..+++............+.+++.+++..++..++.....+...+.+.++...+...+|+|.++++.
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 44556677889999998886533211112222333344444444444443334455667888888899999999999887
Q ss_pred ccCCCCCHHHHHHHHHhHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 367 LGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLG-ALPGLVLFLICGLLNVPFAKILQKC 444 (1354)
Q Consensus 367 ~~~~~~~~G~ivNlms~D~~~i~~~~-~~~~~~w~~plqi~~~~~~L~~~lG~~-~l~gl~v~~i~~~l~~~~~~~~~~~ 444 (1354)
....+.++|+++|.++.|++++.+.. ..+..++..++.+++++++++..++|. +++.++++.+.+.+...+.+.+.+.
T Consensus 85 ~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 85 EFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667789999999999999998654 345555655555555544443334442 2333333333333344456667777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 445 QSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRRE----KEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFL 520 (1354)
Q Consensus 445 q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~----~El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~ 520 (1354)
.++..+..++..+.++|.++|+++||.|++|+.+.++..+..+ .+.+..+.............. ....++.+.
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~ 241 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIG---MANLLAIGG 241 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 7777777888889999999999999999999987666655333 333322221111111111111 111112222
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhccccCCCCcEEEEee
Q 000680 521 GCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEG 600 (1354)
Q Consensus 521 ~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~ 600 (1354)
+..++.++.+|.+.+++.+.++..+..|+..++..+..+.+++++.+||.+++..++..+.. ..+.+..++.|+++|+
T Consensus 242 g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~~~~~~I~~~~v 319 (569)
T PRK10789 242 GSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--SEPVPEGRGELDVNIR 319 (569)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CCCCCCCCCcEEEEEE
Confidence 22333347899999999999999999999999999999999999999999999765322111 1111123457999999
Q ss_pred EEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCC
Q 000680 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTS 667 (1354)
Q Consensus 601 ~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~yv~Q~~ 667 (1354)
+|+|+.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|+|
T Consensus 320 ~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 398 (569)
T PRK10789 320 QFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTP 398 (569)
T ss_pred EEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCC
Confidence 9999754 35799999999999999999999999999999999999999999999987 489999999
Q ss_pred CCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000680 668 WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1354)
Q Consensus 668 ~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1354)
+++++|++|||.++.+ .++++++++++.+++++++..+|+|.+|.+|++|.+||||||||++||||++++|+++|||||
T Consensus 399 ~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEp 478 (569)
T PRK10789 399 FLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDA 478 (569)
T ss_pred eeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 9999999999999864 678889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchHHHHHHHh
Q 000680 747 FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819 (1354)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 819 (1354)
||+||+++++++.+.+.. ..+++|+|++||+++.++.+|+|++|++|++++.|++++++++++.|.++.+.+
T Consensus 479 ts~LD~~~~~~i~~~l~~-~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 479 LSAVDGRTEHQILHNLRQ-WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred cccCCHHHHHHHHHHHHH-HhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 999999999999876544 457899999999999999999999999999999999999998888888876543
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-61 Score=605.65 Aligned_cols=534 Identities=18% Similarity=0.249 Sum_probs=402.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1354)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~ 351 (1354)
.+.+++.+.+..+..++..++..+.|+++..+++.+.... .... ++..+++..++..+......+...++..++|.
T Consensus 14 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK13657 14 LGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-DIFP---LLAAWAGFGLFNIIAGVLVARHADRLAHRRRL 89 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777788888889999999998888654321 1111 11111111122222222223445677788888
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHH
Q 000680 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLF 427 (1354)
Q Consensus 352 ~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~v~ 427 (1354)
.+...+|+|.++++.....+.++|++++.++.|++.+.+... .+.......+..++.+++++ +.+++..+++ +
T Consensus 90 ~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~---~ 166 (588)
T PRK13657 90 AVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVL---G 166 (588)
T ss_pred HHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 899999999999987766778999999999999999875432 22222222222222222222 2333333333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000680 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR----REKEFKWLSEAQLRKAYG 503 (1354)
Q Consensus 428 ~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~----R~~El~~l~~~~~~~~~~ 503 (1354)
++...+...+.+..++.+++.++..++..+...|.++|+++||.|+.|+.+.++..+. ++.+.+..+.........
T Consensus 167 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK13657 167 IVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLN 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345566778888888889999999999999999999999999998776555443 333333222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchh
Q 000680 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1354)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~ 583 (1354)
.+.... ..+.+..++++... ++.+|.+.+++++.++..+..|+..+...+..+.+++.+++|+.+++..++..+...
T Consensus 247 ~~~~~~--~~~~~~~~g~~~v~-~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 323 (588)
T PRK13657 247 RAASTI--TMLAILVLGAALVQ-KGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPP 323 (588)
T ss_pred HHHHHH--HHHHHHHHHHHHHH-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 111111 11223334444444 478999999999999999999999999999999999999999999987643221111
Q ss_pred hhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000680 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1354)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----- 658 (1354)
.....+..++.|+++|++|+|+++ +++|+|+|+++++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~ 401 (588)
T PRK13657 324 GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRT 401 (588)
T ss_pred CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhh
Confidence 111111223469999999999743 4699999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 --------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
.|+|+||+|+++++|++|||.++.+ .++++..++++.+++++.++.+|+|.+|.+|++|.+||||||||++
T Consensus 402 ~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRia 481 (588)
T PRK13657 402 VTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLA 481 (588)
T ss_pred CCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHH
Confidence 5999999999999999999999864 6788899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcC
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
||||++++|++++||||||+||+++++.+++.+.. ..+++|+|+|||+++.++.+|+|++|++|++++.|+++++++.+
T Consensus 482 lARall~~~~iliLDEpts~LD~~t~~~i~~~l~~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~ 560 (588)
T PRK13657 482 IARALLKDPPILILDEATSALDVETEAKVKAALDE-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARG 560 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCC
Confidence 99999999999999999999999999999876644 34689999999999999999999999999999999999999888
Q ss_pred chHHHHHHH
Q 000680 810 TAFEQLVNA 818 (1354)
Q Consensus 810 ~~~~~~~~~ 818 (1354)
+.|.++.+.
T Consensus 561 ~~y~~l~~~ 569 (588)
T PRK13657 561 GRFAALLRA 569 (588)
T ss_pred ChHHHHHHH
Confidence 888887754
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-60 Score=613.21 Aligned_cols=543 Identities=21% Similarity=0.232 Sum_probs=415.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1354)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1354)
..++.+++.+....+..++..++.++.|+++..+++.+-... +....+.+++++++..++..++.....+...+++.++
T Consensus 132 ~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~-~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (694)
T TIGR01846 132 PAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHR-GLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRI 210 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777778888888889999999999887553211 1122223333344444445555444455667788899
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000680 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1354)
Q Consensus 350 r~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~ 428 (1354)
...+...+|+|.++++...-++.++|+++|.+ .|++.+.++.. .+.......+.+++.+++++..-++-+++.+++++
T Consensus 211 ~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 289 (694)
T TIGR01846 211 DVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLV 289 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987776778999999999 69999988643 22222222222333333443333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYW 508 (1354)
Q Consensus 429 i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~ 508 (1354)
+...+...+.+.+++..++.++..+++.+.+.|.++|+++||.++.|+.+.++.++.-++..+...+.............
T Consensus 290 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR01846 290 CYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIE 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455677778888888889999999999999999999999999988777766555444333333222222221111
Q ss_pred HHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhcc
Q 000680 509 MSP-TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1354)
Q Consensus 509 ~~p-~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~ 587 (1354)
... ....++.+.+..++..+.+|.+.+.+...+...+..|+..+...+..+.+++++++|+.++++.++..+.. ....
T Consensus 370 ~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~~ 448 (694)
T TIGR01846 370 LIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLAA 448 (694)
T ss_pred HHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCCC
Confidence 111 11122223333333347899999999999999999999999999999999999999999999765432211 1111
Q ss_pred ccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000680 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1354)
Q Consensus 588 ~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------- 658 (1354)
.+..++.|+++|++|+|+++ ++++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 449 ~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~ 527 (694)
T TIGR01846 449 LPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPA 527 (694)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHH
Confidence 12234679999999999754 35699999999999999999999999999999999999999999999988
Q ss_pred ----eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000680 659 ----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 659 ----~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1354)
+|+||||+|.++++|++|||.++.+ .++++..++++.++++++++.+|+|.+|.+|++|.+||||||||++||||
T Consensus 528 ~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 528 WLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARA 607 (694)
T ss_pred HHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHH
Confidence 3899999999999999999999864 67888999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchHH
Q 000680 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1354)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 813 (1354)
++++|++++||||||+||+++++.+.+.+.. ..+++|+|++||+++.++.||+|++|++|++++.|++++++++++.|.
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~ 686 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMRE-ICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYA 686 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHH-HhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHH
Confidence 9999999999999999999999999876644 457899999999999999999999999999999999999999888888
Q ss_pred HHHH
Q 000680 814 QLVN 817 (1354)
Q Consensus 814 ~~~~ 817 (1354)
++.+
T Consensus 687 ~l~~ 690 (694)
T TIGR01846 687 RLWQ 690 (694)
T ss_pred HHHH
Confidence 8764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-61 Score=599.98 Aligned_cols=502 Identities=19% Similarity=0.248 Sum_probs=373.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1354)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~ 351 (1354)
.+.+++.++...++.++..++..+.|+++..+++........... +.++.++++..++..+......+...+.+.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (529)
T TIGR02868 8 LQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPPVLYL-SVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLG 86 (529)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777778888888899999999988754322111111 1111111122233333332333455677888888
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHH
Q 000680 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLF 427 (1354)
Q Consensus 352 ~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~-~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~v~ 427 (1354)
.+...+|+|.++++....++.++|+++|.++.|++++.+.... +..+....+.+++++++++ +.+++.++++++++
T Consensus 87 ~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~ 166 (529)
T TIGR02868 87 RLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLA 166 (529)
T ss_pred HHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8999999999999887777889999999999999999886543 3333444444444444443 34444444333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIY 507 (1354)
Q Consensus 428 ~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~ 507 (1354)
.++.+ ....+..++..++..+..++..+..+|.++|+++||.|++|+.+.++.++..++..+...+.....+....+.
T Consensus 167 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (529)
T TIGR02868 167 GFVAP--LVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQ 244 (529)
T ss_pred HHHHH--HHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 2223334555667778889999999999999999999999999988887766654444333333333222222
Q ss_pred HHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhh-
Q 000680 508 WMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR- 585 (1354)
Q Consensus 508 ~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~- 585 (1354)
.....+ ..++.+.+..++.++.+|.+.+.+.+.+...+..|+..++..+..+.++++|.+|+.++++.++..+.....
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~ 324 (529)
T TIGR02868 245 LLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPA 324 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC
Confidence 221111 112222232333346899999998888889999999999999999999999999999999765432111000
Q ss_pred -ccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000680 586 -ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1354)
Q Consensus 586 -~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------ 658 (1354)
.......+.|+++|++|+|+++ +++|+|+||++++||.++|+||+|||||||+++|+|+++|++|+|.++|
T Consensus 325 ~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~ 402 (529)
T TIGR02868 325 AGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL 402 (529)
T ss_pred CcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH
Confidence 0011123569999999999753 3699999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+||||||+|++|++||+|||.+|.+ .+++++.++++.++++++++.+|+|.+|.|||+|.+||||||||++||
T Consensus 403 ~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiA 482 (529)
T TIGR02868 403 QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALA 482 (529)
T ss_pred HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHH
Confidence 7999999999999999999999865 688999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 779 (1354)
||++++|+|++||||||+||+++++.|.+.+. ...+++|+|+|||++
T Consensus 483 Rall~~~~iliLDE~TSaLD~~te~~I~~~l~-~~~~~~TvIiItHrl 529 (529)
T TIGR02868 483 RALLADAPILLLDEPTEHLDAGTESELLEDLL-AALSGKTVVVITHHL 529 (529)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEecCC
Confidence 99999999999999999999999999987765 456789999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-61 Score=598.83 Aligned_cols=519 Identities=20% Similarity=0.226 Sum_probs=398.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1354)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~ 354 (1354)
+++.++...++.++..++..+.|+++..+++..-... +....+.+++++++..++..++.....+...+.+.++...+.
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 4 NKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSG-SVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777788888899999999999988543211 112222334444444555555555555677788999999999
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHH--HHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHH
Q 000680 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLA--IGVLFGVVGLGALPGLVLFLIC 430 (1354)
Q Consensus 355 ~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~--~~~~w~~plqi~~~--~~~L~~~lG~~~l~gl~v~~i~ 430 (1354)
..+|+|.++++.. ..+...+.++.|++++.++... +..+...++.++.+ ++.+.+.+++.+++++++++
T Consensus 83 ~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~-- 155 (544)
T TIGR01842 83 QPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAVVLV-- 155 (544)
T ss_pred HHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--
Confidence 9999999998752 2355677788999999876442 33334444433322 22223445554444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMS 510 (1354)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~~ 510 (1354)
.+.....+..++..++.++..+++.+.++|.++|+++||.|++|+.+.++.++..++..+...+.....+....+....
T Consensus 156 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 156 -GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred -HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333456677777888899999999999999999999999999999988887766665444433333222222211111
Q ss_pred HHH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhccc
Q 000680 511 PTI--ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL 588 (1354)
Q Consensus 511 p~~--v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~ 588 (1354)
..+ +.++.++++... ++.+|++.+++.+.++..+..|+..++..+..+.++++|.+|+.+++..++..+.. .+.
T Consensus 235 ~~~~~~~~~~~g~~l~~-~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~ 310 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAI-DGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPL 310 (544)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCC
Confidence 111 122233344333 47899999999999999999999999999999999999999999999765432211 111
Q ss_pred cCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------
Q 000680 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1354)
Q Consensus 589 ~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------- 658 (1354)
+..++.++++|++|+|+++ ++++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 311 ~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 311 PEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389 (544)
T ss_pred CCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH
Confidence 2233579999999999753 35799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 659 ---SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 659 ---~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
.++|+||+|+++++|++|||.++.+ .+++++.++++.+++++.++.+|+|.+|.+|++|.+||||||||++||||+
T Consensus 390 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARal 469 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL 469 (544)
T ss_pred HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHH
Confidence 4999999999999999999986654 778889999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHh
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
+++|++++||||||+||+++++.+.+.+.....+++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 470 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 470 YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred hcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999988765444346899999999999988899999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=598.91 Aligned_cols=533 Identities=24% Similarity=0.334 Sum_probs=404.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1354)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~ 354 (1354)
++ .+....++.++..++....|.++..+++......... ..+...+++..++..++.....+...+.+.++...+.
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGEL---LELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 6777777888888899999999998887654111111 1111122222223333333334455566688888888
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHH
Q 000680 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWF-HLTWSLALQLFLAIGVLF---GVVGLGALPGLVLFLIC 430 (1354)
Q Consensus 355 ~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~-~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~v~~i~ 430 (1354)
..+|+|.++++....++...|++++.++.|++.+....... ..+-.+++.++..+++++ +.+++..+.+++++.+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~- 167 (567)
T COG1132 89 RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLAL- 167 (567)
T ss_pred HHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-
Confidence 99999999999776677789999999999999998866543 222223333333333333 2344333333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000680 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG-TVIYWM 509 (1354)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~-~~~~~~ 509 (1354)
....+.++.++..++..+..++..+.+.|.++|+++||.|+.|+...++..+..++..+.-.+.....+.. ......
T Consensus 168 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 168 --VLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334555677888888888999999999999999999999998775555444333322211111111111 111222
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhcccc
Q 000680 510 SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQ 589 (1354)
Q Consensus 510 ~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~ 589 (1354)
..+....+.+.+......+.++.+.+.+.+.+...+..|+..+...+..+.++..|.+|+.++++.++...+... ...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~--~~~ 323 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD--PLK 323 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC--CCC
Confidence 222222233333333334679999999999999999999999999999999999999999999987543211111 022
Q ss_pred CCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------
Q 000680 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658 (1354)
Q Consensus 590 ~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----------- 658 (1354)
...+.|+++|++|+|++ ++++|+|+||++++||.+|||||+|||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 324 DTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred CCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence 34467999999999985 35799999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 659 --SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 659 --~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
+||||||+|++|++||+|||.+|.+ .++++..++++.+++++.++.+|+|.+|.+||+|.+||||||||++||||++
T Consensus 402 r~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 402 RKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred HHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 4999999999999999999999988 5888999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchHHHH
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 815 (1354)
+||+|++||||||+||+++++.|.+.+. ...++||+|+|+|+++.+.+||+|+||++|+|++.|+|+|++++++.|.++
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~-~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l 560 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALK-KLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARL 560 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHH-HHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHH
Confidence 9999999999999999999999987665 344788999999999999999999999999999999999999999999988
Q ss_pred HHHh
Q 000680 816 VNAH 819 (1354)
Q Consensus 816 ~~~~ 819 (1354)
...+
T Consensus 561 ~~~~ 564 (567)
T COG1132 561 YQAQ 564 (567)
T ss_pred HHHh
Confidence 7654
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-59 Score=588.85 Aligned_cols=534 Identities=18% Similarity=0.236 Sum_probs=402.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1354)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~ 351 (1354)
++.+++.++...++.++..++..+.|+++..+++....... . ..++...++..++..+......+...++..++|.
T Consensus 14 l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (585)
T TIGR01192 14 LNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-V---LPTLALWAGFGVFNTIAYVLVAREADRLAHGRRA 89 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777778888888899999999999999886533221 1 1111111112222223222233456678888899
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHH
Q 000680 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLF 427 (1354)
Q Consensus 352 ~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~v~ 427 (1354)
.+...+|+|.++++....++.++|++++.++.|++.+.++.. .+.......+.+++++++++ +.+++.+++. +
T Consensus 90 ~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~---~ 166 (585)
T TIGR01192 90 TLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVL---G 166 (585)
T ss_pred HHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 899999999999987766677899999999999999886543 33333444444444433333 2333333322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000680 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREK----EFKWLSEAQLRKAYG 503 (1354)
Q Consensus 428 ~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~----El~~l~~~~~~~~~~ 503 (1354)
.+...+...+.+..++.+++..+..++..+.+.|.++||++||.|+.|+.+.++.++.-++ +.+..+.......+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (585)
T TIGR01192 167 ILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLN 246 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223334456677777778888888899999999999999999999998877666554433 222222211111121
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchh
Q 000680 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1354)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~ 583 (1354)
.++..... +.++.++++... ++.++.+.+++.+.++..+..|+..++..+..+.+++.+++|+.++++.++..++..
T Consensus 247 ~~~~~~~~--~~v~~~g~~~v~-~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 323 (585)
T TIGR01192 247 RMASTISM--MCILVIGTVLVI-KGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPA 323 (585)
T ss_pred HHHHHHHH--HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCc
Confidence 11111111 112223333333 478999999999999999999999999999999999999999999987543221111
Q ss_pred hhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000680 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1354)
Q Consensus 584 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----- 658 (1354)
+....+...+.++++|++|+|+++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 401 (585)
T TIGR01192 324 DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINT 401 (585)
T ss_pred cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhh
Confidence 111111223469999999999743 3689999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 --------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
.++|+||+|+++++|++|||.++.+ .++++..++++.+++++.+..+|+|.+|.+|++|.+||||||||++
T Consensus 402 ~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~ 481 (585)
T TIGR01192 402 VTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLA 481 (585)
T ss_pred CCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHH
Confidence 4899999999999999999999864 5677788899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcC
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
||||++++|++++||||||+||+++++.+.+.+. ...+++|+|+|||+++.++.||+|++|++|++++.|+++++.+++
T Consensus 482 lARall~~p~ililDEpts~LD~~~~~~i~~~l~-~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 560 (585)
T TIGR01192 482 IARAILKNAPILVLDEATSALDVETEARVKNAID-ALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD 560 (585)
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHH-HHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCC
Confidence 9999999999999999999999999999876554 445689999999999999999999999999999999999999988
Q ss_pred chHHHHHHH
Q 000680 810 TAFEQLVNA 818 (1354)
Q Consensus 810 ~~~~~~~~~ 818 (1354)
+.|.++...
T Consensus 561 ~~y~~l~~~ 569 (585)
T TIGR01192 561 GRFYKLLRR 569 (585)
T ss_pred ChHHHHHHh
Confidence 888887654
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-59 Score=551.19 Aligned_cols=527 Identities=23% Similarity=0.301 Sum_probs=408.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 283 AICALLRTIAVVVGPLLLYAFVN-YSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQ 361 (1354)
Q Consensus 283 ~~~~~~~~~~~~~~P~ll~~li~-~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~ 361 (1354)
.++.++..+....+-.++-..++ .+... ....-+.++++++++.++.+++...--...++.+.++|..+...+++|.
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~--~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQ--LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544433 22221 1222234455556666677776655556778999999999999999999
Q ss_pred hcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-H---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000680 362 LKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-W---FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPF 437 (1354)
Q Consensus 362 L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~---~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i~~~l~~~~ 437 (1354)
.++....-+...+|++.++++.-++.+..++. | ....-..|+-+++++++..|.-|.-.+..++.+.+++. .+
T Consensus 84 ~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMi---lv 160 (559)
T COG4988 84 AKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMI---LV 160 (559)
T ss_pred HhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HH
Confidence 99998777778899999999999988776433 2 23333456667777766666655544444444333332 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 438 AKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI----ESRREKEFKWLSEAQLRKAYGTVIYWMSPTI 513 (1354)
Q Consensus 438 ~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i----~~~R~~El~~l~~~~~~~~~~~~~~~~~p~~ 513 (1354)
++..++..+++++....=-..-=+-|+|+.++|.|+-.+..+++| ++.|+.-|+.||-.....+...++...+-
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi-- 238 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI-- 238 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 566666666777666666667778889999999999876555544 66888888888765544444434333322
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhh-ccccCCC
Q 000680 514 ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR-ISLQKSD 592 (1354)
Q Consensus 514 v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~-~~~~~~~ 592 (1354)
...+.+.+..+.+.++++-..+|.++-+---.-.|++.+...+..-.++..+.+.+..|+..+..+...... .....+.
T Consensus 239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~ 318 (559)
T COG4988 239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP 318 (559)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence 222334555555524889888888888877778899999999999999999999999999887654432211 1122233
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~ 659 (1354)
..+..+|.+|.|+++ +++++|+||++++|+.++|||+||||||||+++|+|+++|++|+|.++| +
T Consensus 319 ~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 319 IEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred ceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 455566999999865 3799999999999999999999999999999999999999999999987 5
Q ss_pred EEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000680 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 660 i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1354)
++||+|+|.++++|+||||.++++ .+++...++++..++.+.++. |+|-+|.|||+|.+|||||+|||+||||+++++
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999987 568899999999999999999 999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchHHHHHHH
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1354)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 818 (1354)
++|||||||++||+++++.|.+.+ ....++||+|++||+++.+.++|+|++|++|+++++|+++++.++++.|.+++.+
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~~l-~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~ 554 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQAL-QELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQ 554 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHHHH-HHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHH
Confidence 999999999999999999887654 4555679999999999999999999999999999999999999999999999876
Q ss_pred hh
Q 000680 819 HR 820 (1354)
Q Consensus 819 ~~ 820 (1354)
++
T Consensus 555 q~ 556 (559)
T COG4988 555 QE 556 (559)
T ss_pred Hh
Confidence 43
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=588.08 Aligned_cols=505 Identities=22% Similarity=0.275 Sum_probs=385.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 276 LKENIFIAICALLRTIAVVVGPLLLYAFVNYSN-RGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1354)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~-~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~ 354 (1354)
|+.++...++.++..++..+.|+++..+++... ... ....-+.+++++++..++..++.....+...+++.++...+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGE-PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777788888899999999999998652 221 222222233333344444455444445667778888888899
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHH
Q 000680 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLFLIC 430 (1354)
Q Consensus 355 ~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~---~~lG~~~l~gl~v~~i~ 430 (1354)
..+|+|.++++....++.++|+++|.++.|++++.++.. .+..+....+.+++++++++ +.+++..+++++++++
T Consensus 81 ~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~- 159 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI- 159 (529)
T ss_pred HHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-
Confidence 999999999887666778999999999999999987544 35555555555554444443 4444444433332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000680 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKE----FKWLSEAQLRKAYGTVI 506 (1354)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~E----l~~l~~~~~~~~~~~~~ 506 (1354)
+...+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.++.++.-++. .+..+..........++
T Consensus 160 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02857 160 --FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF 237 (529)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223456777777788888999999999999999999999999998877776544332 22222211111111111
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhc
Q 000680 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1354)
Q Consensus 507 ~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~ 586 (1354)
..... +....++++.+. ++.+|.+.+++.+.+...+..|+..+...+..+.+++++.+|+.++++.++.+... ..
T Consensus 238 ~~~~~--~~~~~~~~~~~~-~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~--~~ 312 (529)
T TIGR02857 238 ATLSV--ALVAVYIGFRLL-AGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK--AP 312 (529)
T ss_pred HHHHH--HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--cC
Confidence 11111 111223444444 46899999999999999999999999999999999999999999999754322111 11
Q ss_pred cccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------
Q 000680 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1354)
Q Consensus 587 ~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------- 658 (1354)
......+.|+++|++|+|+++ ++++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 313 ~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~ 391 (529)
T TIGR02857 313 VTAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA 391 (529)
T ss_pred CCCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCH
Confidence 111123479999999999754 35799999999999999999999999999999999999999999999987
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
+++||+|+|+++++|++|||.++.+ .++++..++++.++++++++.+|+|.+|.+|++|.+||||||||++|||
T Consensus 392 ~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laR 471 (529)
T TIGR02857 392 DSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALAR 471 (529)
T ss_pred HHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHH
Confidence 3999999999999999999999865 5778899999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEE
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1354)
|++++|++++||||||+||+++++.+++.+. ...+++|+|+|||+++.++.||+|++|
T Consensus 472 al~~~~~ililDE~ts~lD~~~~~~i~~~l~-~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 472 AFLRDAPLLLLDEPTAHLDAETEALVTEALR-ALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHH-HhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999987654 445789999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-59 Score=627.96 Aligned_cols=543 Identities=19% Similarity=0.205 Sum_probs=382.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 273 NVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSA 352 (1354)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~ 352 (1354)
+.+++.+++..++.++..++..+.|+++..+++-+-+.......+..++..+++..++..++.....|...+++.++-..
T Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~ 900 (1466)
T PTZ00265 821 FSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKT 900 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455577777777777788888888888887632221110111222222222222333333222233455677777777
Q ss_pred HHHHHHHHHhcCCcccC--CCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000680 353 LMVAVYQKQLKLSSLGR--KKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1354)
Q Consensus 353 l~~~iy~K~L~ls~~~~--~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i 429 (1354)
+...+|+|.++.+.... .++++|++++.++.|++.+.++.. .+..+...++.+++++++++. +.|. .+++++.+
T Consensus 901 lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~-~~~~--l~l~~~~~ 977 (1466)
T PTZ00265 901 MKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFY-FCPI--VAAVLTGT 977 (1466)
T ss_pred HHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHH
Confidence 77788888888775433 357899999999999999987543 233333344444444433332 1221 11111111
Q ss_pred HHHHHHHHHHHHHHH-HHHH-----------------HHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHH
Q 000680 430 CGLLNVPFAKILQKC-QSEF-----------------MIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFK 491 (1354)
Q Consensus 430 ~~~l~~~~~~~~~~~-q~~~-----------------~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~ 491 (1354)
...+...+.+..+.. .++. .+..++....++|.++|||+||.|+-|+.+.++..+.-+...+
T Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~ 1057 (1466)
T PTZ00265 978 YFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNK 1057 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 111112222322211 1111 1123344678999999999999999999988877665544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 492 WLSEAQLRKAYGTVIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRIN 570 (1354)
Q Consensus 492 ~l~~~~~~~~~~~~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~ 570 (1354)
..++.....+....+..+...+ ..++.+++..++..+.++.+.++.++..+.....++..+...+..+.++++|.+|+.
T Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~ 1137 (1466)
T PTZ00265 1058 GQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYY 1137 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222222222111111111111 223333343444457899999888877766555678888899999999999999999
Q ss_pred HHhcccC-CCcchhhhcc---ccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCC
Q 000680 571 AFLLDHE-LNNDDVRRIS---LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 571 ~fL~~~e-~~~~~~~~~~---~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~ 646 (1354)
+++..++ .+..+..... +....+.|+++|++|+|+.+++.++|+|+||+|++|+.+|||||+|||||||+++|+|+
T Consensus 1138 ~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ 1217 (1466)
T PTZ00265 1138 PLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRF 1217 (1466)
T ss_pred HHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 9997542 2111111111 11234579999999999865556899999999999999999999999999999999999
Q ss_pred ccC------------------------------------------------------CCcEEEEcC-------------e
Q 000680 647 IPK------------------------------------------------------ISGTVNLYG-------------S 659 (1354)
Q Consensus 647 ~~~------------------------------------------------------~~G~i~~~g-------------~ 659 (1354)
++| ++|+|.++| .
T Consensus 1218 ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~ 1297 (1466)
T PTZ00265 1218 YDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNL 1297 (1466)
T ss_pred CCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhh
Confidence 998 699999988 4
Q ss_pred EEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000680 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 660 i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1354)
||||+|+|.+|++||||||.+|.+ .++++.+++++.++++++++.||+|.+|.||++|.+|||||||||+||||++++|
T Consensus 1298 i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p 1377 (1466)
T PTZ00265 1298 FSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREP 1377 (1466)
T ss_pred ccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999965 6788899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhhcCEEEEEeC----CeEE-EecChHHHHh-cCch
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEG----GQIT-QSGNYQELLL-AGTA 811 (1354)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~----G~i~-~~g~~~~l~~-~~~~ 811 (1354)
+||||||||||||+++++.|.+.+.... .+++|+|+|||+++.++.||+|++|++ |+++ ++|+|+||++ .++.
T Consensus 1378 ~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~ 1457 (1466)
T PTZ00265 1378 KILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGV 1457 (1466)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCCh
Confidence 9999999999999999999876654433 368999999999999999999999999 9955 8999999998 4788
Q ss_pred HHHHHHH
Q 000680 812 FEQLVNA 818 (1354)
Q Consensus 812 ~~~~~~~ 818 (1354)
|.++.+.
T Consensus 1458 Y~~l~~~ 1464 (1466)
T PTZ00265 1458 YKKYVKL 1464 (1466)
T ss_pred HHHHHhh
Confidence 8887643
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-57 Score=620.19 Aligned_cols=471 Identities=17% Similarity=0.193 Sum_probs=358.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000680 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1354)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~ 422 (1354)
+.+.+.-..+-..+|++.++.+..-.++..+|+|+|.++.|++.+++... .+..+...++.++.++++++..-.+.+++
T Consensus 1031 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~ 1110 (1522)
T TIGR00957 1031 IGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVI 1110 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555566677777665555567899999999999999988543 44555566666666655554332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY 502 (1354)
Q Consensus 423 gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~ 502 (1354)
.++++++...+...+.+..+..++.....++...+..+|.++|+++||.|+||+.|.++..+.-+...+...........
T Consensus 1111 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1190 (1522)
T TIGR00957 1111 IPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRW 1190 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222333333344445555566677788999999999999999999999887766555543332221111111
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Q 000680 503 GT-VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1354)
Q Consensus 503 ~~-~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~ 581 (1354)
.. .+..+...++ +..+.+.....+.++++.+..++.+...+..|+..+...+..+.++.+|.+|+.+|++.++.++.
T Consensus 1191 ~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~ 1268 (1522)
T TIGR00957 1191 LAVRLECVGNCIV--LFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPW 1268 (1522)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 11 1111111111 11122223333678999999999999999999999999999999999999999999965432211
Q ss_pred hhhh-cccc--CCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC
Q 000680 582 DVRR-ISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG 658 (1354)
Q Consensus 582 ~~~~-~~~~--~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g 658 (1354)
..+. .+++ +.++.|+++|++|+|+++. .++|+|+||+|++||.+||||++|||||||+++|+|+++|++|+|.++|
T Consensus 1269 ~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG 1347 (1522)
T TIGR00957 1269 QIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG 1347 (1522)
T ss_pred cccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECC
Confidence 1111 1111 2456899999999998653 4799999999999999999999999999999999999999999999998
Q ss_pred -------------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -------------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
+|+||||+|.+|++||||||....++++++..++++.|++++.++.+|+|.+|++||+|.+||||||
T Consensus 1348 ~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957 1348 LNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred EEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence 4999999999999999999983336788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 805 (1354)
||++||||++++|+|+|||||||+||+++.+.|.+. ++...+++|+|+|+|+++.+.++|+|+||++|+|+|.|+|+|+
T Consensus 1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~-l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQST-IRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999887654 4555688999999999999999999999999999999999999
Q ss_pred HhcCchHHHHHHH
Q 000680 806 LLAGTAFEQLVNA 818 (1354)
Q Consensus 806 ~~~~~~~~~~~~~ 818 (1354)
+++++.|.++.++
T Consensus 1507 l~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1507 LQQRGIFYSMAKD 1519 (1522)
T ss_pred HhCCCHHHHHHHH
Confidence 9988888888754
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-57 Score=523.68 Aligned_cols=519 Identities=23% Similarity=0.289 Sum_probs=393.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCC-cc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000680 290 TIAVVVGPLLLYAFVNYSNRGE-EN--LQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSS 366 (1354)
Q Consensus 290 ~~~~~~~P~ll~~li~~~~~~~-~~--~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~ 366 (1354)
-.+....|++.+..++-.++.+ .+ .......+.+.++..+..+++.---.+....+..++-.....-+|+..+.++-
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4566778999998888765221 11 11122333344455555555443333444556666666777788888888876
Q ss_pred ccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000680 367 LGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP-GLVLFLICGLLNVPFAKILQKC 444 (1354)
Q Consensus 367 ~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~-gl~v~~i~~~l~~~~~~~~~~~ 444 (1354)
....+..+|++.+.|..-...|.++.. .+..+.-..+++.+....++...|++..+ .+..+.....+...+..+-.++
T Consensus 123 ~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~f 202 (591)
T KOG0057|consen 123 SFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202 (591)
T ss_pred HhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHH
Confidence 666667899999999888777777544 23344445577788888899999975432 2223333334444567777889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 000680 445 QSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIE-SRREKEFKWLSEAQLRKA---YGTVIYWMSPTIISSVIFL 520 (1354)
Q Consensus 445 q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~-~~R~~El~~l~~~~~~~~---~~~~~~~~~p~~v~~~~f~ 520 (1354)
+++..++.|+..+.+-+.|.|-.+||.|+=|+.-.++.. .+++.|-..++-.+.... ....++. . ..+.+.|.
T Consensus 203 R~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFs-v--~~~~im~l 279 (591)
T KOG0057|consen 203 RKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFS-V--ALTFIMVL 279 (591)
T ss_pred HHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHH-H--HHHHHHHH
Confidence 999999999999999999999999999999987665553 344444333322222111 1111211 1 12222333
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhccccCCCCcEEEEee
Q 000680 521 GCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEG 600 (1354)
Q Consensus 521 ~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~ 600 (1354)
+..-.....+|.+.....-+++..|+.|+..|......+.|+.+-.+-....+..++... ....+....++.|+|+|+
T Consensus 280 ~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~--~~~~~i~~~~~~I~F~dV 357 (591)
T KOG0057|consen 280 GSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQ--EAALPIELFGGSIEFDDV 357 (591)
T ss_pred HhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhh--hccCCcccCCCcEEEEee
Confidence 322222357899999999999999999999999999999888877766554333222111 101223334567999999
Q ss_pred EEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCC
Q 000680 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTS 667 (1354)
Q Consensus 601 ~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~yv~Q~~ 667 (1354)
+|+|+++ +++|+++||+|++||.+||+|+|||||||++++|+++.+ .+|+|.++| .||||||+.
T Consensus 358 ~f~y~~k--~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~ 434 (591)
T KOG0057|consen 358 HFSYGPK--RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDS 434 (591)
T ss_pred EEEeCCC--CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcc
Confidence 9999864 579999999999999999999999999999999999999 999999998 399999999
Q ss_pred CCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000680 668 WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1354)
Q Consensus 668 ~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1354)
.+||.||.+||.+|.+ ...++..++++..++++-+..+|+|++|.+||+|..|||||||||+||||+..||+|+++|||
T Consensus 435 ~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEa 514 (591)
T KOG0057|consen 435 VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEA 514 (591)
T ss_pred cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCc
Confidence 9999999999999987 456777888888999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchHHHHHH
Q 000680 747 FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817 (1354)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 817 (1354)
||+||.++++.|++.+.. ...+||+|+|.|+++.++++|+|+++++|++.+.|+++|++...+.+.++..
T Consensus 515 TS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~ 584 (591)
T KOG0057|consen 515 TSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWT 584 (591)
T ss_pred ccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhc
Confidence 999999999999987654 6789999999999999999999999999999999999999996666666653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=610.57 Aligned_cols=472 Identities=19% Similarity=0.242 Sum_probs=344.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000680 343 RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGAL 421 (1354)
Q Consensus 343 ~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l 421 (1354)
.+.+.+.-..+...+|++.++.+..-.++..+|+|+|.++.|++.+++... .+..+....++++.+++++.....+..+
T Consensus 978 ~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~ 1057 (1622)
T PLN03130 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLW 1057 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566667777777766555678899999999999999987543 4445555555555554443332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA 501 (1354)
Q Consensus 422 ~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~ 501 (1354)
+.+++++++..+.....+..++.++..+..+....+..+|.++|+++||.|++|+.|.+...+..+...+..........
T Consensus 1058 ~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1137 (1622)
T PLN03130 1058 AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNR 1137 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222233333444444455566677889999999999999999998887766555544332211111111
Q ss_pred HHHHHHHHHHHHHHHHH-HHH-HHHhCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000680 502 YGTVIYWMSPTIISSVI-FLG-CALTGSAPLN-----ASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLL 574 (1354)
Q Consensus 502 ~~~~~~~~~p~~v~~~~-f~~-~~l~~~~~Lt-----~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~ 574 (1354)
+.... ...+..++. +++ +.+..++..+ +..+-.+++....+..++..+......+.++.+|++|+.+|++
T Consensus 1138 wl~~~---l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~ 1214 (1622)
T PLN03130 1138 WLAIR---LETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYID 1214 (1622)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11000 011111111 111 2122222111 2333334445555666777777777888899999999999997
Q ss_pred ccCCCcchhh-hcccc--CCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCC
Q 000680 575 DHELNNDDVR-RISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651 (1354)
Q Consensus 575 ~~e~~~~~~~-~~~~~--~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~ 651 (1354)
.++..+...+ ..+++ +.++.|+++|++|+|+++ .+++|+|+||+|++||.+||||++|||||||+++|+|+++|++
T Consensus 1215 ~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~ 1293 (1622)
T PLN03130 1215 LPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293 (1622)
T ss_pred CCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCC
Confidence 5433221111 11111 234689999999999754 3479999999999999999999999999999999999999999
Q ss_pred cEEEEcC-------------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCC
Q 000680 652 GTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1354)
Q Consensus 652 G~i~~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~ 718 (1354)
|+|.++| +|+||||+|.+|++||||||..+.++++++..++++.|++++.++.+|+|.+|+|||+|.
T Consensus 1294 G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~ 1373 (1622)
T PLN03130 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGE 1373 (1622)
T ss_pred ceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCC
Confidence 9999998 499999999999999999999988888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEE
Q 000680 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798 (1354)
Q Consensus 719 ~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~ 798 (1354)
+||||||||++||||++++|+|++||||||+||+++.+.|.+. ++...+++|+|+|+|+++.+.+||+|+||++|+|+|
T Consensus 1374 nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~-I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE 1452 (1622)
T PLN03130 1374 NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVE 1452 (1622)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999987654 455567899999999999999999999999999999
Q ss_pred ecChHHHHhc-CchHHHHHHHh
Q 000680 799 SGNYQELLLA-GTAFEQLVNAH 819 (1354)
Q Consensus 799 ~g~~~~l~~~-~~~~~~~~~~~ 819 (1354)
.|+|+|++++ ++.|.++.+..
T Consensus 1453 ~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1453 FDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred eCCHHHHHhCCCCHHHHHHHHc
Confidence 9999999987 57888887653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-56 Score=605.67 Aligned_cols=470 Identities=19% Similarity=0.242 Sum_probs=342.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000680 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1354)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~ 422 (1354)
+.+.+.-..+...+|++.++.+..-.++.++|+++|.++.|++.+++... .+..+....++++.+++++.....+..++
T Consensus 976 ~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~ 1055 (1495)
T PLN03232 976 SSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWA 1055 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455566667777665555678899999999999999987544 33344444455555544443332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY 502 (1354)
Q Consensus 423 gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~ 502 (1354)
.+++++++..+.....+..+..++..+..+..-.+..+|.++|+++||.|++|+.|.++.++..+...+..........+
T Consensus 1056 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 1135 (1495)
T PLN03232 1056 IMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRW 1135 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221112222223333445555666667778899999999999999999998877666555444322111111110
Q ss_pred HHHHHHHHHHHHHHH-HHHH-HHHhCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000680 503 GTVIYWMSPTIISSV-IFLG-CALTGSAPLN-----ASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1354)
Q Consensus 503 ~~~~~~~~p~~v~~~-~f~~-~~l~~~~~Lt-----~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~ 575 (1354)
..... ..+..++ .+++ +.+...+.+. ++.+-.+++....+..|+..+...+..+..+.+|.+||.++++.
T Consensus 1136 l~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~ 1212 (1495)
T PLN03232 1136 LTIRL---ETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDL 1212 (1495)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00000 0111111 1111 2222212221 22222344555667788999999999999999999999999975
Q ss_pred cCCCcchhhh-cccc--CCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCc
Q 000680 576 HELNNDDVRR-ISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652 (1354)
Q Consensus 576 ~e~~~~~~~~-~~~~--~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G 652 (1354)
++..+...+. .+++ +..+.|+++|++|+|+++ .+++|+|+||+|++||.+||||++|||||||+++|+|+++|++|
T Consensus 1213 ~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G 1291 (1495)
T PLN03232 1213 PSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKG 1291 (1495)
T ss_pred CccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 4322111111 1111 234679999999999754 35799999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCC
Q 000680 653 TVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1354)
Q Consensus 653 ~i~~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~ 719 (1354)
+|.++| +|+||||+|.+|++||||||..+.++++++..++++.|++++.++.+|+|.+|++|++|.+
T Consensus 1292 ~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1371 (1495)
T PLN03232 1292 RIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGEN 1371 (1495)
T ss_pred eEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCC
Confidence 999998 4999999999999999999999888889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEe
Q 000680 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1354)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1354)
||||||||++||||++++|+|++||||||+||+++.+.|.+. ++...+++|+|+|||+++.+.++|+|+||++|+|+|.
T Consensus 1372 LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~-L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~ 1450 (1495)
T PLN03232 1372 FSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRT-IREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEY 1450 (1495)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-HHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999987654 4555678999999999999999999999999999999
Q ss_pred cChHHHHhcCc-hHHHHHHH
Q 000680 800 GNYQELLLAGT-AFEQLVNA 818 (1354)
Q Consensus 800 g~~~~l~~~~~-~~~~~~~~ 818 (1354)
|+|+|++++++ .|.++.+.
T Consensus 1451 Gt~~eLl~~~~~~f~~l~~~ 1470 (1495)
T PLN03232 1451 DSPQELLSRDTSAFFRMVHS 1470 (1495)
T ss_pred CCHHHHHhCCCCHHHHHHHH
Confidence 99999998764 78888754
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=508.67 Aligned_cols=473 Identities=23% Similarity=0.349 Sum_probs=355.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHh
Q 000680 340 FGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVL--FGVVG 417 (1354)
Q Consensus 340 ~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L--~~~lG 417 (1354)
..+.....|+-+.+.-.+|+|....+.........|++.|.+..|++.++++.......|...+-++.+..+. |.-++
T Consensus 80 lvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~ 159 (573)
T COG4987 80 LVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIP 159 (573)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3455566788888889999999999988777889999999999999999998777766666554443333332 44455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 418 LGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ 497 (1354)
Q Consensus 418 ~~~l~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~ 497 (1354)
.+.+.|+...+..+.+...+.+.-++..++..+.+..=-+-..+.+.|....+++|-++.|.+.++..-+.=.+.-+|.+
T Consensus 160 ~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~ 239 (573)
T COG4987 160 LALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQA 239 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666665555555555556666666666666666666667889999999999999999987776543322222222222
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000680 498 LRKAYGTVIYW-MSPTIISSVIFLGCALTGSAPLNA-STIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575 (1354)
Q Consensus 498 ~~~~~~~~~~~-~~p~~v~~~~f~~~~l~~~~~Lt~-~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~ 575 (1354)
.......++.. ..-.+++...+......+.+..+. ..+...+..|..+..-...-|.++...-|+..|.+|+.+.+.+
T Consensus 240 ~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q 319 (573)
T COG4987 240 RFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQ 319 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccC
Confidence 22222222211 122222212222222223234442 2222222222222211112236777888999999999998876
Q ss_pred cCCCcchhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Q 000680 576 HELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1354)
Q Consensus 576 ~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~ 655 (1354)
++....+ +... +..+..++++|++|+|+++ +.++|+|+||++++||.+||+|++|||||||++.|.|-++|++|+|.
T Consensus 320 ~~e~~~~-~~~~-~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~ 396 (573)
T COG4987 320 KPEVTFP-DEQT-ATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396 (573)
T ss_pred CcccCCC-cccc-CCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeee
Confidence 5433211 1111 1122279999999999976 46899999999999999999999999999999999999999999999
Q ss_pred EcC-------------eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 656 LYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 656 ~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
.+| .+++++|.+.+|++|+|||+..+++ ..+|...+++++.+|++-++..|+|.+|.+||.|..||
T Consensus 397 ~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LS 476 (573)
T COG4987 397 LNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLS 476 (573)
T ss_pred ECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCC
Confidence 988 4899999999999999999999987 46788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecC
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1354)
||||||++|||++.+|+++++|||||.|||+.+++++.+.+. ...+|||+|+|||++..++++|+|++|++|+++++|+
T Consensus 477 GGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~-~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~ 555 (573)
T COG4987 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF-EHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGT 555 (573)
T ss_pred chHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHH-HHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCC
Confidence 999999999999999999999999999999999999987654 4457999999999999999999999999999999999
Q ss_pred hHHHHhcCchHHHHH
Q 000680 802 YQELLLAGTAFEQLV 816 (1354)
Q Consensus 802 ~~~l~~~~~~~~~~~ 816 (1354)
|++++.+++.|.++.
T Consensus 556 ~~~Ll~~~g~~~~l~ 570 (573)
T COG4987 556 HAELLANNGRYKRLY 570 (573)
T ss_pred HHhhhccccHHHHHh
Confidence 999999888887764
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-55 Score=596.19 Aligned_cols=465 Identities=15% Similarity=0.173 Sum_probs=348.9
Q ss_pred HHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000680 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLIC 430 (1354)
Q Consensus 352 ~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i~ 430 (1354)
.+-..+|++.++.+..-.++..+|+|+|.++.|++.+.+.+. .+..+....+.++.++++++....+..++.++++++.
T Consensus 1032 ~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~ 1111 (1560)
T PTZ00243 1032 NMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLY 1111 (1560)
T ss_pred HHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777666555677899999999999999988544 3445555556665555554433322222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000680 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT-VIYWM 509 (1354)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~-~~~~~ 509 (1354)
..+...+.+..+..++.....++.-.+..+|.++|+++||.|++|+.|.++..+.-+...+...+......... ..-..
T Consensus 1112 ~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l 1191 (1560)
T PTZ00243 1112 YRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFL 1191 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333344455555666666777778999999999999999999998877764443333221111111111111 11111
Q ss_pred HHHHHHHH-HHHHH-HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc-ch----
Q 000680 510 SPTIISSV-IFLGC-ALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN-DD---- 582 (1354)
Q Consensus 510 ~p~~v~~~-~f~~~-~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~-~~---- 582 (1354)
...++.++ .++.+ ++.+...++++.+..++.+...+..|+..+...+..+.++.+|++|+.+|++..+.++ ..
T Consensus 1192 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~ 1271 (1560)
T PTZ00243 1192 SNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEE 1271 (1560)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccc
Confidence 11111111 11222 1223345788887777777788889999999999999999999999999995321110 00
Q ss_pred -------------------hhhc-c-----ccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHH
Q 000680 583 -------------------VRRI-S-----LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637 (1354)
Q Consensus 583 -------------------~~~~-~-----~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKS 637 (1354)
.+.. + .....+.|+|+|++|+|+++ ..++|+|+||+|++||.+||||++|||||
T Consensus 1272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKS 1350 (1560)
T PTZ00243 1272 VDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKS 1350 (1560)
T ss_pred ccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHH
Confidence 0000 0 01123579999999999764 34699999999999999999999999999
Q ss_pred HHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhc
Q 000680 638 SLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINN 704 (1354)
Q Consensus 638 tLl~~i~g~~~~~~G~i~~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~ 704 (1354)
||+++|+|+++|++|+|.++| +|+||||+|.+|++||||||..+..+++++..++++.|++++.++.
T Consensus 1351 TLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~ 1430 (1560)
T PTZ00243 1351 TLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVAS 1430 (1560)
T ss_pred HHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhh
Confidence 999999999999999999998 4999999999999999999988777888999999999999999999
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHHhcC-CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhh
Q 000680 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND-ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783 (1354)
Q Consensus 705 l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~-~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 783 (1354)
+|+|.+|.+|++|.+||||||||++||||++++ |+|+|||||||+||+++.+.|.+. +....+++|+|+|+|+++.+.
T Consensus 1431 lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~-L~~~~~~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243 1431 ESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT-VMSAFSAYTVITIAHRLHTVA 1509 (1560)
T ss_pred CcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH-HHHHCCCCEEEEEeccHHHHH
Confidence 999999999999999999999999999999996 899999999999999999998654 455567899999999999999
Q ss_pred hcCEEEEEeCCeEEEecChHHHHhc-CchHHHHHHH
Q 000680 784 EVDRILVLEGGQITQSGNYQELLLA-GTAFEQLVNA 818 (1354)
Q Consensus 784 ~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 818 (1354)
++|+|+||++|+|++.|+++|++++ ++.|.++.+.
T Consensus 1510 ~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~ 1545 (1560)
T PTZ00243 1510 QYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEA 1545 (1560)
T ss_pred hCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999999974 6788888754
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-56 Score=556.83 Aligned_cols=441 Identities=24% Similarity=0.340 Sum_probs=382.8
Q ss_pred HHHHHHHHHHhHHHHHHhhhcC----CCCcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000680 908 AQSGFVGLQAAATYWLAYAIQI----PKITSGIL-IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAP 982 (1354)
Q Consensus 908 ~~~~~~~~~~~~~~wl~~~~~~----~~~~~~~~-~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p 982 (1354)
..+..+.+.++.++.....+|. .......+ ..+++++++...++.++|.+...+.+.+....+-.++++|+++.|
T Consensus 162 ~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lp 241 (709)
T COG2274 162 ASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLP 241 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCc
Confidence 3334445556666666555543 11222222 334555667788899999999999999999999999999999999
Q ss_pred CccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 983 MLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAREL 1062 (1354)
Q Consensus 983 ~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l 1062 (1354)
++||+++++|++++|++ |++.|...+...+...+..++..+..+++|++.+|+++++++..++++..+.....+..|+.
T Consensus 242 l~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~ 320 (709)
T COG2274 242 LSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRK 320 (709)
T ss_pred HHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999996 77888888888877777777778888899999999999998888888877777777777777
Q ss_pred HHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000680 1063 IRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAAL-FLV 1141 (1354)
Q Consensus 1063 ~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~-~~v 1141 (1354)
.+...+..+...++..|++.|+.|||+.+.|+++..++++..+++.+..+.......+......++..+..+.+.. .+.
T Consensus 321 ~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~ 400 (709)
T COG2274 321 TRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAI 400 (709)
T ss_pred HHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888899999999999999999999999999999999999999999999889888888887775544443 456
Q ss_pred HhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEE
Q 000680 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQL 1221 (1354)
Q Consensus 1142 l~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nV 1221 (1354)
++..|.+|.|.+.++.+.+..+++|+..+++.+++++....+.||+.++++.|+|.+. ++.+...|+.+|+|+|+||
T Consensus 401 lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~---~~~~~~~~~~~g~I~~~nv 477 (709)
T COG2274 401 LVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGEIEFENV 477 (709)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---ccccccccccCceEEEEEE
Confidence 7789999999999999999999999999999999999999999999999999998643 2224455678899999999
Q ss_pred EEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceeccccc
Q 000680 1222 KIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301 (1354)
Q Consensus 1222 sf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~ 1301 (1354)
+|+|+++.|++|+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|++++++++||++|++||||++
T Consensus 478 sf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~ 557 (709)
T COG2274 478 SFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF 557 (709)
T ss_pred EEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccch
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1302 LFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1302 LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
||+|||||||.-.+ +.+||||++||+.|++||||+++|.|||| +|.|+|-|
T Consensus 558 Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGG 613 (709)
T COG2274 558 LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGG 613 (709)
T ss_pred hhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHH
Confidence 99999999996333 46899999999999999999999999999 58888854
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=494.48 Aligned_cols=527 Identities=22% Similarity=0.297 Sum_probs=412.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1354)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1354)
...+....+++.++..+++..+-.++..+.|+.+-..-+-+- +..+...-..+.+.....++++.++..--.+...|+|
T Consensus 13 ~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL-~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig 91 (580)
T COG4618 13 LLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVL-PSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIG 91 (580)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhc-cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777888888888888888999987655443221 1122223334444444455556665544456678999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000680 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF------WFHLTWSLALQLFLAIGVLFGVVGLGA 420 (1354)
Q Consensus 347 ~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~------~~~~~w~~plqi~~~~~~L~~~lG~~~ 420 (1354)
.++-..|..-||.-+++.....+......+.. .|.+.+..|.. ++...| .|+=++++ +++.-.+|+.+
T Consensus 92 ~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW-~P~yl~v~-fl~Hp~lG~~a 165 (580)
T COG4618 92 ERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPW-MPLYLAVI-FLFHPWLGLIA 165 (580)
T ss_pred HHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCch-HHHHHHHH-HHHHHHHHHHH
Confidence 99999999999998864433222222223333 36666665543 344455 46644443 45667899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 421 LPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK 500 (1354)
Q Consensus 421 l~gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~ 500 (1354)
++|.++++.+..+|- +..++--++..+..-+|....+-.+.|..+|+.+|..+...++..+...+-++...+.+-..
T Consensus 166 ~~ga~iLv~la~ln~---~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~ 242 (580)
T COG4618 166 LAGAIILVVLALLNE---RATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRN 242 (580)
T ss_pred HHHHHHHHHHHHHHH---HHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999988888777763 44555566777888899999999999999999999999999999998888887766655443
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000680 501 AY-GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN 579 (1354)
Q Consensus 501 ~~-~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~ 579 (1354)
.. +...-.+--.+-+.+.=.+.+++-++.+|++.++.+--+..-.-.|+...-..+.++..|+.|.+|++++|......
T Consensus 243 ~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~ 322 (580)
T COG4618 243 GAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAA 322 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 22 22111111111222222233344447899999998877777777899999999999999999999999999754322
Q ss_pred cchhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-
Q 000680 580 NDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658 (1354)
Q Consensus 580 ~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g- 658 (1354)
.++.+.+.+++.+.++++++.=+ ...+|+++|+||++++||-++|+||+|||||||.++|.|..+|.+|.|+++|
T Consensus 323 ---~~~m~LP~P~g~L~Ve~l~~~PP-g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga 398 (580)
T COG4618 323 ---AERMPLPAPQGALSVERLTAAPP-GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGA 398 (580)
T ss_pred ---cCCCCCCCCCceeeEeeeeecCC-CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecch
Confidence 23455667788999999999654 4568999999999999999999999999999999999999999999999998
Q ss_pred ------------eEEEEeCCCCCCCCcHHHHHh-cCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 ------------SIAYVSQTSWIQSGSIRDNIL-YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 ------------~i~yv~Q~~~~~~~ti~eni~-~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
+|||.||+--+|.+||.|||. |+.+.|.++.-++.+..+.++-+-.+|+|++|.||+.|.+||||||
T Consensus 399 ~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQR 478 (580)
T COG4618 399 DLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQR 478 (580)
T ss_pred hhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHH
Confidence 599999999999999999997 7777888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 805 (1354)
|||+||||+|.||.+++||||-|+||.+.++.+.+-+.....+|.|+|+|||+++.+..+|+|++|+||++...|+.+|+
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eV 558 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEV 558 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHH
Confidence 99999999999999999999999999999999988777777889999999999999999999999999999999999998
Q ss_pred Hh
Q 000680 806 LL 807 (1354)
Q Consensus 806 ~~ 807 (1354)
++
T Consensus 559 La 560 (580)
T COG4618 559 LA 560 (580)
T ss_pred HH
Confidence 75
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-54 Score=539.41 Aligned_cols=510 Identities=17% Similarity=0.146 Sum_probs=363.6
Q ss_pred HHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 271 ITN-VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1354)
Q Consensus 271 l~~-~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ri 349 (1354)
+++ .+++.+++..++.++..++..+.|.++..+++...... . ....+..++++. ..++..-..+...+.+.++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 84 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG-Q--GSLFSFGGLCLL---ALLFRIGADIFPAYAGMHI 84 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-c--hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 455 67777888888888888888999998887765211010 0 111111122221 1222222233456778888
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000680 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1354)
Q Consensus 350 r~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i 429 (1354)
...+...+|+|.++++.....+.++|+++|.++.|++.+.++...+..+....+.++++++++++.-...+++.++++.+
T Consensus 85 ~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~ 164 (555)
T TIGR01194 85 IANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIII 164 (555)
T ss_pred HHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88888899999999887655667899999999999999998765444444444444444444433221112222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 000680 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE--KFKSLI----ESRREKEFKWLSEAQLRKAYG 503 (1354)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~--~f~~~i----~~~R~~El~~l~~~~~~~~~~ 503 (1354)
.+.+..+..++.++...+..+..++..+...|.++|+++||.|+.|+ ...++. ++.|+...+..+.. ....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 241 (555)
T TIGR01194 165 GTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIF---IAAE 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHH
Confidence 22223334555666677777788889999999999999999999854 223333 33333222211111 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcch-
Q 000680 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD- 582 (1354)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~- 582 (1354)
.+........+.++.+.+. .. +.+|.+.+++.+.+...+..|+..+...+..+.++++|.+||.++++.++.++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~--~~-~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~ 318 (555)
T TIGR01194 242 NFGQLLFFLLIGCALFAAA--MF-ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPEL 318 (555)
T ss_pred HHHHHHHHHHHHHHHHHHH--Hh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 1111111111111111111 11 4789999888888899999999999999999999999999999998532111000
Q ss_pred --hhhc-----cccCCCCcEEEEeeEEEeCCCC--CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcE
Q 000680 583 --VRRI-----SLQKSDRSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1354)
Q Consensus 583 --~~~~-----~~~~~~~~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~ 653 (1354)
.+.. +.......|+++|++|+|++++ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~ 398 (555)
T TIGR01194 319 ELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGE 398 (555)
T ss_pred cccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 0000 1112235799999999997532 236999999999999999999999999999999999999999999
Q ss_pred EEEcC-------------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCC
Q 000680 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1354)
Q Consensus 654 i~~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~L 720 (1354)
|.++| .++|++|+|+++++|+++|+ ....++++..++++.++++++++.+|+|++|. .+|
T Consensus 399 i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~L 471 (555)
T TIGR01194 399 ILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TAL 471 (555)
T ss_pred EEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccC
Confidence 99987 38999999999999999995 23356777889999999999999999999884 789
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHH-hcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEe
Q 000680 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1354)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1354)
|||||||++||||++++|+++|||||||+||+++++.+.+.+.+. ..+++|+|+|||+++.+..||+|++|++|++++.
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999998776543 3468999999999999999999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-55 Score=546.80 Aligned_cols=406 Identities=21% Similarity=0.240 Sum_probs=341.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHH
Q 000680 944 VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023 (1354)
Q Consensus 944 l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~ 1023 (1354)
+.++..++.++..++....+.+...++|.++++++++.|.+||++.++|++++|+++|++.++..+...+..++..++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888899999999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHH
Q 000680 1024 LAIIGIMTFVTWQVLVVAIFAMVAVRFVQ-RYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLK 1102 (1354)
Q Consensus 1024 i~~i~v~~~~~~~l~l~~l~~~~~~~~i~-~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~ 1102 (1354)
++.++++++.+|.++++++..++++.++. .++.+..++..+...+..+...+++.|+++|+++||+|+.|+++.+++.+
T Consensus 142 ~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 221 (529)
T TIGR02868 142 SAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEA 221 (529)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHH
Confidence 88999999999999887776655554443 44445556666666677788999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000680 1103 LVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYI 1181 (1354)
Q Consensus 1103 ~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~ 1181 (1354)
..++..+..........+......++..+..+.+ .+....+..|.++.|.+..++.|+..+..++..+...+.+++...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (529)
T TIGR02868 222 ADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVR 301 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777766665555554444444443332222 223344568899999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHH
Q 000680 1182 ISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLIS 1261 (1354)
Q Consensus 1182 ~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~ 1261 (1354)
.+.+|+.++++.++|.+.. +...+...+|..++|+|+||+|+|+++. ++|+|+||+|+|||+|||||+||||||||++
T Consensus 302 ~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~ 379 (529)
T TIGR02868 302 AAAERIEEVTGAKGPRPEG-VVPAAGALGLGKPTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLM 379 (529)
T ss_pred HHHHHHHHHhcCCCCcCCC-CCCCCcccCCCCceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 9999999999877653321 1111112334567899999999997544 5999999999999999999999999999999
Q ss_pred HHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCC
Q 000680 1262 ALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPN 1340 (1354)
Q Consensus 1262 lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1354)
+|.|+|+|++|+|++||+||+++ .+++|++|++|||||+||+|||||||...+ +++|||+++|++.|+++|+|++||+
T Consensus 380 lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~ 458 (529)
T TIGR02868 380 LLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPD 458 (529)
T ss_pred HHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcc
Confidence 99999999999999999999999 999999999999999999999999998643 5799999999999999999999999
Q ss_pred CcCC----CCcccccc
Q 000680 1341 KLDS----SGKLFSAA 1352 (1354)
Q Consensus 1341 gldt----~G~n~s~~ 1352 (1354)
|||| .|.|+|-|
T Consensus 459 GldT~ige~G~~LSGG 474 (529)
T TIGR02868 459 GLDTVLGEGGARLSGG 474 (529)
T ss_pred cccchhccccCcCCHH
Confidence 9999 37888865
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-56 Score=496.27 Aligned_cols=456 Identities=22% Similarity=0.344 Sum_probs=339.7
Q ss_pred HHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---H
Q 000680 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWF-HLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI---C 430 (1354)
Q Consensus 355 ~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~-~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~~i---~ 430 (1354)
..+|++...+|-.-.-...+||+...|..-.+.+. +..++ ..+--..+.++++++ |..+-.-...|++|++. .
T Consensus 296 ~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~v--YF~~~Fn~wFgLIVfl~m~lY 372 (790)
T KOG0056|consen 296 TELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMV--YFFIKFNIWFGLIVFLMMLLY 372 (790)
T ss_pred HHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhh--hhhhhHhHHHHHHHHHHHHHH
Confidence 34555555554332223457888877765444433 22221 222222244455544 33333334455554433 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK----FKSLIESRREKEFKWLSEAQLRKAYGTVI 506 (1354)
Q Consensus 431 ~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~----f~~~i~~~R~~El~~l~~~~~~~~~~~~~ 506 (1354)
..+...+...-.++|++....-.+--....+.|-+..+||.|+.|+. +.+.|....+.|-+.+..-.+++.....+
T Consensus 373 ~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~I 452 (790)
T KOG0056|consen 373 CYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGI 452 (790)
T ss_pred hheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 22233344555667776654444444455677788999999999864 44555556666655544443443333322
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhc
Q 000680 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1354)
Q Consensus 507 ~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~ 586 (1354)
...+ +.....+.+|... .+.+|.+...-.....-.|..|++.+......+....+-.+|+.+.+++++.-.+.....
T Consensus 453 i~lg--ll~gsll~aY~Vt-~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~ 529 (790)
T KOG0056|consen 453 IGLG--LLAGSLLCAYRVT-EQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAP 529 (790)
T ss_pred hhhH--Hhhhhheeeeeee-eccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCC
Confidence 2221 1222233444444 478999987777777888999999999999999999999999999987654221111112
Q ss_pred cccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------
Q 000680 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1354)
Q Consensus 587 ~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------- 658 (1354)
+.....+.|+++|++|+|+++ +|+|+||||++++|+.+|+|||+|+||||+++.+.++++.++|+|.++|
T Consensus 530 pl~~~~G~i~fsnvtF~Y~p~--k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~ 607 (790)
T KOG0056|consen 530 PLKVTQGKIEFSNVTFAYDPG--KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ 607 (790)
T ss_pred CccccCCeEEEEEeEEecCCC--CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHH
Confidence 223356789999999999875 6899999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCCC-CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~~-~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
+||.|||+..+||.||..||.++++- ..|...++.+++++++.+-.+|+|+.|.+||||..|||||||||++||
T Consensus 608 ~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiAR 687 (790)
T KOG0056|consen 608 SSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIAR 687 (790)
T ss_pred HHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHH
Confidence 49999999999999999999999873 456677788999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc-Cch
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA-GTA 811 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~ 811 (1354)
++..+|.|++|||.|||||.++++.| +.++.....++|.|+|.|+++.+-+||.|++++||+|+|.|+++|++.+ ++.
T Consensus 688 tiLK~P~iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~ 766 (790)
T KOG0056|consen 688 TILKAPSIILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGA 766 (790)
T ss_pred HHhcCCcEEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCc
Confidence 99999999999999999999999997 4566677789999999999999999999999999999999999999987 778
Q ss_pred HHHHHHHh
Q 000680 812 FEQLVNAH 819 (1354)
Q Consensus 812 ~~~~~~~~ 819 (1354)
|+++.+.+
T Consensus 767 Ya~MWq~q 774 (790)
T KOG0056|consen 767 YADMWQAQ 774 (790)
T ss_pred HHHHHHHH
Confidence 88887544
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-53 Score=576.60 Aligned_cols=471 Identities=19% Similarity=0.191 Sum_probs=349.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000680 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1354)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~ 422 (1354)
+.+.+.-..+...++++.++.+..-.++..+|+|+|.++.|++.+.+... .+..+....+.+++++++++...++.+++
T Consensus 951 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~ 1030 (1490)
T TIGR01271 951 HTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIA 1030 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666655444567899999999999999987543 44455555556666655555444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000680 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLR-KA 501 (1354)
Q Consensus 423 gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~-~~ 501 (1354)
.+++++++..+...+.+..+..++.....+....+..+|.++|+.+||.|+||+.|.++..+.-+...+........ ..
T Consensus 1031 ~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 1110 (1490)
T TIGR01271 1031 AIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRW 1110 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444455566666777788889999999999999999999998877766544322111111000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Q 000680 502 YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581 (1354)
Q Consensus 502 ~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~ 581 (1354)
+...+....-.++..+.+.. ++....+++.+-.++++...+..++..+...+..+..+.+|.+||.+|++.++..+.
T Consensus 1111 l~~~~~~i~~~~~~~~~~l~---~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~ 1187 (1490)
T TIGR01271 1111 FQMRIDIIFVFFFIAVTFIA---IGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPR 1187 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 11001000111111111111 111223455555566666667778888888888999999999999999865432211
Q ss_pred hhh--------------h-ccc--cCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHh
Q 000680 582 DVR--------------R-ISL--QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL 644 (1354)
Q Consensus 582 ~~~--------------~-~~~--~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~ 644 (1354)
..+ . .++ .+..+.|+++|++|+|+++ .+++|+|+||+|++||.++|||++|||||||+++|+
T Consensus 1188 ~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~ 1266 (1490)
T TIGR01271 1188 PSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL 1266 (1490)
T ss_pred ccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 000 0 000 1234679999999999864 467999999999999999999999999999999999
Q ss_pred CCccCCCcEEEEcC-------------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcc
Q 000680 645 GEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711 (1354)
Q Consensus 645 g~~~~~~G~i~~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t 711 (1354)
|+++ .+|+|.++| +++|+||+|.+|++||||||.....+++++..++++.|++.+.++.+|+|.+|
T Consensus 1267 rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt 1345 (1490)
T TIGR01271 1267 RLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDF 1345 (1490)
T ss_pred hhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccccc
Confidence 9997 799999988 49999999999999999999876678899999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEE
Q 000680 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1354)
Q Consensus 712 ~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1354)
.||++|.+||||||||++||||++++|+|+|||||||+||+++.+.|.+.+ +...+++|+|+|||+++.+..+|+|++|
T Consensus 1346 ~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L-~~~~~~~TvI~IaHRl~ti~~~DrIlvL 1424 (1490)
T TIGR01271 1346 VLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL-KQSFSNCTVILSEHRVEALLECQQFLVI 1424 (1490)
T ss_pred ccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHH-HHHcCCCEEEEEecCHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999886654 4556789999999999999999999999
Q ss_pred eCCeEEEecChHHHHhcCchHHHHHHHhh
Q 000680 792 EGGQITQSGNYQELLLAGTAFEQLVNAHR 820 (1354)
Q Consensus 792 ~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 820 (1354)
++|+|++.|++++++++++.|.++.++..
T Consensus 1425 ~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1425 EGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred ECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 99999999999999987788988876543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-54 Score=541.04 Aligned_cols=438 Identities=23% Similarity=0.334 Sum_probs=360.2
Q ss_pred HHHHHHHHHhHHHHHHhhhcCCC--C-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 000680 909 QSGFVGLQAAATYWLAYAIQIPK--I-TSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLF 985 (1354)
Q Consensus 909 ~~~~~~~~~~~~~wl~~~~~~~~--~-~~~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~f 985 (1354)
..+...+....++++...++... . ....+...++++.++..++.++..+...+.+.+...++|.++++++++.|++|
T Consensus 23 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~ 102 (567)
T COG1132 23 LLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSF 102 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 33344455555665554443211 1 11123334444555667777777888888889999999999999999999999
Q ss_pred ccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 986 FDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRI 1065 (1354)
Q Consensus 986 Fd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl 1065 (1354)
|+++++|++++|+++|++.++..+......+...++.+++.+++++..+|.+.++.+...+++.+...++.+..++..+.
T Consensus 103 ~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (567)
T COG1132 103 FDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRR 182 (567)
T ss_pred hCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988866666678888889999999999999888887777777777777777888888
Q ss_pred HhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhc
Q 000680 1066 NGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAA-LFLVLIP 1144 (1354)
Q Consensus 1066 ~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~-~~~vl~~ 1144 (1354)
.....+.+.+.+.|+++|+++||+|+.++...+++.+..+...+...........+.....++..+....+. +....+.
T Consensus 183 ~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (567)
T COG1132 183 VREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVL 262 (567)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999888888877766666544444444444333444433332222 2233456
Q ss_pred CCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEE
Q 000680 1145 RGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIR 1224 (1354)
Q Consensus 1145 ~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~ 1224 (1354)
.+.++.|.+..++.|...+..++..+...+..++....|.||+.++++.+++... ...+ .++..|+|+|+||+|+
T Consensus 263 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~I~f~~vsf~ 337 (567)
T COG1132 263 SGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKDTIGSIEFENVSFS 337 (567)
T ss_pred cCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCCCCCeEEEEEEEEE
Confidence 7789999999999999999999999999999999999999999999987665321 1111 3346689999999999
Q ss_pred eCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccc
Q 000680 1225 YRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304 (1354)
Q Consensus 1225 Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~ 1304 (1354)
|+++ ++||+|+||+|+|||++|||||||||||||+++|+|+|||++|+|+|||+||+++++++||++|++|||||+||+
T Consensus 338 y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~ 416 (567)
T COG1132 338 YPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS 416 (567)
T ss_pred cCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec
Confidence 9764 459999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCC-CCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1305 GSVRTNLDPLGL-YSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1305 GTIR~NLdp~~~-~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
||||+||+++.+ +||||+++|+++|+++|||+++|+|||| .|.|+|.|
T Consensus 417 ~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgG 469 (567)
T COG1132 417 GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGG 469 (567)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHH
Confidence 999999998765 7999999999999999999999999999 47888865
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-54 Score=552.68 Aligned_cols=460 Identities=21% Similarity=0.246 Sum_probs=370.3
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC--CCc-c--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 887 KPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP--KIT-S--GILIGVYAGVSTASAVFVYFRSFFAAH 961 (1354)
Q Consensus 887 ~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~-~--~~~~~iy~~l~~~~~i~~~~~~~~~~~ 961 (1354)
+.+++|++..+. .+...+++.++...+.+..+++....++.- ... . ...+.+++++.++..++.+++.+....
T Consensus 150 ~~l~~~~~~~~~--~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (711)
T TIGR00958 150 FRLLGLSGRDWP--WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNY 227 (711)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555553322 223333344445556666677666555421 111 1 123344555566677788888889999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000680 962 LGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVA 1041 (1354)
Q Consensus 962 ~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~ 1041 (1354)
.+.+...++|.++++++++.|++||+++++|+++||+++|++.++..+...+..++..++.+++.+++++..+|++.++.
T Consensus 228 ~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~ 307 (711)
T TIGR00958 228 TMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVT 307 (711)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000680 1042 IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWL 1121 (1354)
Q Consensus 1042 l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1121 (1354)
+..+++..++.+++.+..++..+...+..+...+++.|+++|+++||+|+.|+++.+++.+..++..+............
T Consensus 308 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (711)
T TIGR00958 308 LINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGY 387 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777788887787777777888888999999999999999999999999999999887766654443332222
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCC
Q 000680 1122 ILRVEALQNLTL-FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAI 1200 (1354)
Q Consensus 1122 ~~~l~~l~~~~~-~~~~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~ 1200 (1354)
.....++..+.. ++..+...++..|.++.|.+..++.|...+..++..+...+.++++...+.+|+.++++.+++.+..
T Consensus 388 ~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~ 467 (711)
T TIGR00958 388 LWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT 467 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 222222222211 1222233455689999999999999999999999999999999999999999999999877654321
Q ss_pred CCCCCCCCCCCCcceEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCe
Q 000680 1201 VEDKRPPSSWPFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1354)
Q Consensus 1201 ~~~~~~~~~wp~~G~I~f~nVsf~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGv 1279 (1354)
. ....++..|.|+|+||+|+|+.+ .++||+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++||+
T Consensus 468 --~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~ 543 (711)
T TIGR00958 468 --G--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGV 543 (711)
T ss_pred --C--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 1 11223467899999999999642 246999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhccCceecccccccccchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1280 DI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+++++.+++|++|++|||||++|+|||||||... .+++|||+++|+++++++++|+++|+|||| .|.|+|-|
T Consensus 544 ~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 621 (711)
T TIGR00958 544 PLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGG 621 (711)
T ss_pred EHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHH
Confidence 99999999999999999999999999999999744 357899999999999999999999999999 47788854
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=524.46 Aligned_cols=506 Identities=16% Similarity=0.167 Sum_probs=348.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 267 VRKVITNVYLKENIFIAICALLRTIAVVVG-PLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRS 345 (1354)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (1354)
+++.+++.+++.++...++.++..++..+. |++...+++..... ...-+.+++.+++..++..+ ..+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS---LLVLPEFLGLLLLLMAVTLG----SQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 455667777888888888888888887764 67767777644221 11111111111111111111 22334455
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000680 346 GMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1354)
Q Consensus 346 ~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~ 425 (1354)
+.++...+...+|+|.++++....++..+|+++|.++.|++.+..+...+..++...+.++++++++++.-++.+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 66666667777888888887665567789999999999999998765556667777777777777666543333344333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc--h----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQS--W----EEKFKSLIESRREKEFKWLSEAQLR 499 (1354)
Q Consensus 426 v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~--w----E~~f~~~i~~~R~~El~~l~~~~~~ 499 (1354)
++.+.+.+...+.++.++..++.++..+++.+.++|.++|++++++.. . ++.|.+..++.++...+..+ .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 231 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADT----F 231 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHH----H
Confidence 333333445566777788888889999999999999999999998433 2 33344444444433332211 1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000680 500 KAYGTVIYWMSPTI-ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHEL 578 (1354)
Q Consensus 500 ~~~~~~~~~~~p~~-v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~ 578 (1354)
.............+ +.+..+.... .+...++...++ ......+..|+..+...+..+.+++++.+|+.+++..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~ 308 (547)
T PRK10522 232 HLSAVNWSNIMMLGAIGLVFYMANS-LGWADTNVAATY--SLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYK 308 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhcCChHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 11111110011111 1111111111 111122222222 2223335689999999999999999999999999754432
Q ss_pred CcchhhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC
Q 000680 579 NNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG 658 (1354)
Q Consensus 579 ~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g 658 (1354)
++.. +. ...+..+.++++|++|+|+.+ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 309 ~~~~-~~-~~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 384 (547)
T PRK10522 309 AEFP-RP-QAFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384 (547)
T ss_pred cccc-cc-cccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 1101 11 111112479999999999742 4699999999999999999999999999999999999999999999987
Q ss_pred -------------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -------------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
+++|++|+|.++++|++|| +...++++.+++++.+++..+++. ++|. .+|.+||||||
T Consensus 385 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~ 455 (547)
T PRK10522 385 KPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQK 455 (547)
T ss_pred EECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHH
Confidence 4999999999999999999 444566677777777777665542 2221 24789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEEEe
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1354)
||++||||++++|++++||||||+||+++++.+.+.+..... +++|+|+|||+++.+..+|+|++|++|++++.
T Consensus 456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999998876654432 58999999999999999999999999999876
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=544.40 Aligned_cols=438 Identities=21% Similarity=0.275 Sum_probs=361.9
Q ss_pred HHHHHHHHHhHHHHHHhhhcC--CCCc--c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000680 909 QSGFVGLQAAATYWLAYAIQI--PKIT--S-GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPM 983 (1354)
Q Consensus 909 ~~~~~~~~~~~~~wl~~~~~~--~~~~--~-~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~ 983 (1354)
.++...+.+..++.+...++. +... . .....+++++.++..++.+++.+.....+.+...+++.+++++++++|+
T Consensus 145 ~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~ 224 (686)
T TIGR03797 145 GLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPV 224 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 333444555555555544432 1111 1 1223445555666778888999999999999999999999999999999
Q ss_pred ccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 984 LFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELI 1063 (1354)
Q Consensus 984 ~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~ 1063 (1354)
+||++.++|++++|++ |++.++..+...+...+..++.+++.++++++++|++.++++.+++++..+..++.+..+...
T Consensus 225 ~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~ 303 (686)
T TIGR03797 225 SFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKE 303 (686)
T ss_pred HHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997 789998888877777666666677788888999999988877666666666666666666666
Q ss_pred HHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000680 1064 RINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVL 1142 (1354)
Q Consensus 1064 rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~vl 1142 (1354)
+......+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..+.......|......++..+..+++ .+.+.+
T Consensus 304 ~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~l 383 (686)
T TIGR03797 304 RRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISL 383 (686)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667788999999999999999999999999999999998888888777777777666665554433322 333445
Q ss_pred hcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEE
Q 000680 1143 IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLK 1222 (1354)
Q Consensus 1143 ~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVs 1222 (1354)
+..|.++.|.+..+.++...+..|+..+...+.+++....+.+|+.++++.|+|.+. +..++ .+..|.|+|+||+
T Consensus 384 v~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~~--~~~~~~I~~~nvs 458 (686)
T TIGR03797 384 LGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTDP--GKLSGAIEVDRVT 458 (686)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCCC--CCCCceEEEEEEE
Confidence 568999999999999999999999999999999999999999999999987766431 11111 1346789999999
Q ss_pred EEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccc
Q 000680 1223 IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302 (1354)
Q Consensus 1223 f~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~L 1302 (1354)
|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++|++|++|||||+|
T Consensus 459 f~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 538 (686)
T TIGR03797 459 FRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRL 538 (686)
T ss_pred EEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCcc
Confidence 99976667799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1303 FRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1303 F~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+|||||||..++.++|||+++|++.|+++++|+++|+|||| .|.|+|-|
T Consensus 539 f~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGG 592 (686)
T TIGR03797 539 MSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGG 592 (686)
T ss_pred CcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHH
Confidence 999999999876668999999999999999999999999999 57888865
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-53 Score=546.68 Aligned_cols=460 Identities=19% Similarity=0.217 Sum_probs=368.4
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcC--CCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKITS---GILIGVYAGVSTASAVFVYFRSFFAA 960 (1354)
Q Consensus 886 ~~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~--~~~~~---~~~~~iy~~l~~~~~i~~~~~~~~~~ 960 (1354)
++.++.+++..++.. ...+++.++...+.++.++++...++. ++... ..+..+++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKLI--VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666443332 222333334445556666666665543 11111 11223344455666778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000680 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1354)
Q Consensus 961 ~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~ 1040 (1354)
..+.+...+++.++++++++.|++||++.++|++++|++ |.+.+...+...+...+..++.+++.++++++++|+++++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 300 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLL 300 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998 8888877776666666666667777777888999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000680 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1354)
Q Consensus 1041 ~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1354)
++..++++..+...+.+..++..+......+...+++.|+++|+.|||+||.|+++.+++.+..++..+..+.......+
T Consensus 301 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (708)
T TIGR01193 301 SLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQG 380 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777778888888888888889999999999999999999999999999988888777666655544444
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000680 1121 LILRVEALQNLTL-FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1354)
Q Consensus 1121 l~~~l~~l~~~~~-~~~~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~ 1199 (1354)
......++..+.. ++..+.+.++..|.+|.|.+.++.++...+..|+..+...+.+++....+++|+.++++.|+|.+.
T Consensus 381 ~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 460 (708)
T TIGR01193 381 QQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFIN 460 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 4333333332222 222333455568999999999999999999999999999999999999999999999988877532
Q ss_pred CCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCe
Q 000680 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1354)
Q Consensus 1200 ~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGv 1279 (1354)
. ......++..|.|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|+|||+
T Consensus 461 ~---~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~ 536 (708)
T TIGR01193 461 K---KKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536 (708)
T ss_pred c---ccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCE
Confidence 1 1112234457899999999999644 46999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhccCceecccccccccchhhhcCCC--CCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--GLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1280 DI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~--~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+++++.+++|++|++|||||+||+|||||||..+ .+++|+|+++|++.++++++|+++|+|||| .|.|+|-|
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgG 615 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGG 615 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHH
Confidence 99999999999999999999999999999999755 358999999999999999999999999999 57888865
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-53 Score=534.29 Aligned_cols=458 Identities=18% Similarity=0.144 Sum_probs=357.4
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcC---CC--Cc-chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 887 KPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI---PK--IT-SGILIGVYAGVSTASAVFVYFRSFFAA 960 (1354)
Q Consensus 887 ~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~---~~--~~-~~~~~~iy~~l~~~~~i~~~~~~~~~~ 960 (1354)
+.+++|++..++... +.+++.++...+....++.+...++. ++ .. ...++.+++++.++..++.+++.++..
T Consensus 11 ~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 11 RWLKQQSKPAKRWLN--LSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred HHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667765443322 22333333444445555555544431 11 11 112334455555667778888889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000680 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1354)
Q Consensus 961 ~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~ 1040 (1354)
..+.+...+++.++++++++.|++||++.++|++++|+++|++.++..+...+..++..++.+++.++++++++|+++++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888888888888888999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000680 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1354)
Q Consensus 1041 ~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1354)
++.++++..++..++.+..++..+...+..+...+++.|+++|+++||+|+.|+++.+++.+..++..+..........+
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFL 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776677777777777777777778888999999999999999999999999999999888877766655554444
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhcCCccChhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 000680 1121 LILRVEALQNLTLFTAA-LFLVLIPRGYVAPGLV---------GLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQF 1190 (1354)
Q Consensus 1121 l~~~l~~l~~~~~~~~~-~~~vl~~~g~ls~g~~---------gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~ 1190 (1354)
......++..+.++++. .++... .|.++.|.+ .+++.++..+..|+..+...+.++.....+.+|+.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 327 (588)
T PRK11174 249 SSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTF 327 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433322221 222222 356665543 2333566778899999999999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCC
Q 000680 1191 MHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA 1270 (1354)
Q Consensus 1191 ~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~ 1270 (1354)
++.|++.+. ++. .+...+..++|+|+||+|.|.++ ++||+|+||+|+|||++||||+||||||||+++|.|+| |+
T Consensus 328 l~~~~~~~~--~~~-~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~ 402 (588)
T PRK11174 328 LETPLAHPQ--QGE-KELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY 402 (588)
T ss_pred HcCCCcccC--CCc-cccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC
Confidence 987765321 111 11111234689999999988655 46999999999999999999999999999999999999 99
Q ss_pred CCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----C
Q 000680 1271 GGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----S 1345 (1354)
Q Consensus 1271 ~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~ 1345 (1354)
+|+|++||+|+++++.+++|++|++|||||+||+|||||||..++ +++|||+++|++.|++++||++||+|||| .
T Consensus 403 ~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 403 QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred CcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 999999999999999999999999999999999999999997653 58999999999999999999999999999 4
Q ss_pred Ccccccc
Q 000680 1346 GKLFSAA 1352 (1354)
Q Consensus 1346 G~n~s~~ 1352 (1354)
|.|+|-|
T Consensus 483 G~~LSGG 489 (588)
T PRK11174 483 AAGLSVG 489 (588)
T ss_pred CCCCCHH
Confidence 7788854
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=542.23 Aligned_cols=464 Identities=18% Similarity=0.205 Sum_probs=375.3
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcC--CCCc-c--hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKIT-S--GILIGVYAGVSTASAVFVYFRSFFAA 960 (1354)
Q Consensus 886 ~~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~--~~~~-~--~~~~~iy~~l~~~~~i~~~~~~~~~~ 960 (1354)
++.++.+++..++... ..+++.++...+.++.++.+...++. ++.. . ..+..+++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSRGALL--YLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666664433222 22222333334445555555554432 1111 1 12234445555667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000680 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1354)
Q Consensus 961 ~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~ 1040 (1354)
..+.+...+++.++++++++.|++||++.++|++++|+++| +.+...+...+..++..++.+++.++++++++|+++++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 298 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 57887787777788888888888889999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000680 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1354)
Q Consensus 1041 ~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1354)
++..++++.++..++.+..++..+......+...+++.|+++|+.+||+++.|+.+.+++.+..++..+..........+
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777777777777777777777888999999999999999999999999999998888877777666666666
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000680 1121 LILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1354)
Q Consensus 1121 l~~~l~~l~~~~~~~~-~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~ 1199 (1354)
......++..+..+++ .+.++++..|.++.|.+.++.++...+..|+..+...+.+++....+.+|+.++++.|+|.+.
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 6655555554433322 333455678999999999999999999999999999999999999999999999988776532
Q ss_pred CCCC--C-CCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEE
Q 000680 1200 IVED--K-RPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276 (1354)
Q Consensus 1200 ~~~~--~-~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~I 1276 (1354)
.... . .....++..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 1100 0 011113456899999999999876667999999999999999999999999999999999999999999999
Q ss_pred cCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCccccc
Q 000680 1277 DGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSA 1351 (1354)
Q Consensus 1277 DGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~ 1351 (1354)
||+|+++++.+++|++|++|||||+||+|||||||..++ +++|+|+++|++.++++++|.++|+|||| .|.|+|-
T Consensus 539 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSG 618 (710)
T TIGR03796 539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSG 618 (710)
T ss_pred CCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCH
Confidence 999999999999999999999999999999999997654 58999999999999999999999999999 5888886
Q ss_pred c
Q 000680 1352 A 1352 (1354)
Q Consensus 1352 ~ 1352 (1354)
|
T Consensus 619 G 619 (710)
T TIGR03796 619 G 619 (710)
T ss_pred H
Confidence 5
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-52 Score=534.67 Aligned_cols=460 Identities=21% Similarity=0.238 Sum_probs=368.4
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcC--CCCc--ch-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKIT--SG-ILIGVYAGVSTASAVFVYFRSFFAA 960 (1354)
Q Consensus 886 ~~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~--~~~~--~~-~~~~iy~~l~~~~~i~~~~~~~~~~ 960 (1354)
++.++.+++..++... ..+++.++...+.++.++.+...++. +... .. .+..+++++.++..++.+++.++..
T Consensus 135 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 135 KHWFWSTLKESWPLYR--DVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred chHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666654333222 22223333344455566665555442 1111 11 1223344445567788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000680 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1354)
Q Consensus 961 ~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~ 1040 (1354)
+.+.+...+++.++++|++++|++| ++.++|++++|+ +|++.+...+...+...+..++.++..++++++++|+++++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999998 788999999999 79999999988877777777777777788888999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000680 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1354)
Q Consensus 1041 ~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1354)
.+..++++..+..++.+..++..+......+...+++.|+++|+.+||+|+.|+.+.+++.+..++..+..+.......+
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777778889999999999999999999999999999999988877777666665555
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000680 1121 LILRVEALQNLTLF-TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1354)
Q Consensus 1121 l~~~l~~l~~~~~~-~~~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~ 1199 (1354)
......++..+..+ +..+.+.++..|.++.|.+.+++++...+..|+..+...+.+++....+.+|+.++++.|+|.+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 55444444433222 22233445568999999999999999999999999999999999999999999999998776432
Q ss_pred CCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCe
Q 000680 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1354)
Q Consensus 1200 ~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGv 1279 (1354)
. .......+..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++||+
T Consensus 451 ~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 527 (694)
T TIGR03375 451 G---TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV 527 (694)
T ss_pred C---CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 1 1111112346889999999999765567999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1280 DI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+++++++++|++|++|||||++|+|||||||...+ +++|+|+++|++.++++|+|+++|+|||| .|.|+|-|
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgG 605 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHH
Confidence 999999999999999999999999999999998654 48999999999999999999999999999 47788865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-52 Score=525.90 Aligned_cols=438 Identities=22% Similarity=0.308 Sum_probs=350.5
Q ss_pred HHHHHHHHHHhHHHHHHhhhcC--CCCc--chHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000680 908 AQSGFVGLQAAATYWLAYAIQI--PKIT--SGIL---IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFK 980 (1354)
Q Consensus 908 ~~~~~~~~~~~~~~wl~~~~~~--~~~~--~~~~---~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~ 980 (1354)
+.+....+.+..++++...++. .... .... +.+++++.++..++.+++.+.....+.+...+++.++++++++
T Consensus 31 ~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~ 110 (592)
T PRK10790 31 MLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALR 110 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444555666666655542 1111 1111 2223444455667778888888999999999999999999999
Q ss_pred CCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 981 APMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAR 1060 (1354)
Q Consensus 981 ~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr 1060 (1354)
+|++||++.++|++++|+++|++.++..+...+..++..++.+++.++++++++|++.++.+..+++...+...+.+..+
T Consensus 111 ~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~ 190 (592)
T PRK10790 111 QPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYST 190 (592)
T ss_pred CCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888888888888889999999877665554444444555555556
Q ss_pred HHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000680 1061 ELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWL-ILRVEALQNLTLFTAALF 1139 (1354)
Q Consensus 1061 ~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl-~~~l~~l~~~~~~~~~~~ 1139 (1354)
...+......+...+++.|+++|+.+||+|+.++++.+++.+..++..+..+.......+. .....++..+..+++.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (592)
T PRK10790 191 PIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLML 270 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666677888999999999999999999999999999988777666655444433332 222333332222222111
Q ss_pred HHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEE
Q 000680 1140 LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELR 1219 (1354)
Q Consensus 1140 ~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~ 1219 (1354)
......|.++.|.+.+++.|...+..|+..+...+.++++...+.+|+.++++.++++.. .. ..++..|+|+|+
T Consensus 271 ~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~---~~~~~~~~i~~~ 344 (592)
T PRK10790 271 FGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---ND---DRPLQSGRIDID 344 (592)
T ss_pred HHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CC---ccCCCCCeEEEE
Confidence 112357899999999999999999999999999999999999999999999987654321 11 112345789999
Q ss_pred EEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceeccc
Q 000680 1220 QLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQE 1299 (1354)
Q Consensus 1220 nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQd 1299 (1354)
||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++|++|++||||
T Consensus 345 ~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~ 423 (592)
T PRK10790 345 NVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQD 423 (592)
T ss_pred EEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccC
Confidence 999999754 4699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1300 PTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1300 p~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+||+||||+||..+++++|+|+++|++++|++++|+++|+|||| .|.|+|-|
T Consensus 424 ~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGG 480 (592)
T PRK10790 424 PVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVG 480 (592)
T ss_pred CccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHH
Confidence 999999999999988788999999999999999999999999999 47888865
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=513.52 Aligned_cols=410 Identities=18% Similarity=0.207 Sum_probs=344.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHH
Q 000680 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1354)
Q Consensus 938 ~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~ 1017 (1354)
.++++++.++..++.+++.+.....+.+...+++.++++++++.|.+||++.++|++++|+++|++.++..+...+..++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~ 126 (529)
T TIGR02857 47 LGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLV 126 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44555666677788889999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHH
Q 000680 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1354)
Q Consensus 1018 ~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~ 1097 (1354)
..++.+++.+++++..+|.++++++..+++..++...+.+..++..+......+...+++.|+++|+++||+|+.|+++.
T Consensus 127 ~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~ 206 (529)
T TIGR02857 127 LAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQA 206 (529)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHH
Confidence 88888888888889999988777665555555555555555556666666677788999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176 (1354)
Q Consensus 1098 ~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~ 1176 (1354)
+++.+..++..+..........+......++..+..+++ .+.++.+..|.++.|.+.+++.|+..+..|+..+...+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~ 286 (529)
T TIGR02857 207 AAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHA 286 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888777766666656666555555554433332 2233334488999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccH
Q 000680 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGK 1256 (1354)
Q Consensus 1177 le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGK 1256 (1354)
++....+.+|+.++++.+++... .. +...+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+|||||
T Consensus 287 ~~~~~~~~~ri~~ll~~~~~~~~---~~--~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGK 361 (529)
T TIGR02857 287 RADGVAAAEALFAVLDAPRPLAG---KA--PVTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGK 361 (529)
T ss_pred HHHHHHHHHHHHHHhCCCcccCC---Cc--CCCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCH
Confidence 99999999999999985543221 11 11122346899999999997655579999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHH
Q 000680 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTI 1335 (1354)
Q Consensus 1257 STL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I 1335 (1354)
|||+++|.|+|+|++|+|++||+|+++++.+++|+++++|||||++|+|||||||.... +++|+|+++|++.+++++++
T Consensus 362 STL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i 441 (529)
T TIGR02857 362 STLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFV 441 (529)
T ss_pred HHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999997543 57999999999999999999
Q ss_pred hcCCCCcCC----CCcccccc
Q 000680 1336 SSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1336 ~~Lp~gldt----~G~n~s~~ 1352 (1354)
+++|+|||| .|.++|-|
T Consensus 442 ~~lp~Gldt~v~e~g~~LSgG 462 (529)
T TIGR02857 442 AALPQGLDTLIGEGGAGLSGG 462 (529)
T ss_pred HhCcccccchhccccccCCHH
Confidence 999999999 47788754
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=515.60 Aligned_cols=407 Identities=18% Similarity=0.191 Sum_probs=340.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHH
Q 000680 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1354)
Q Consensus 941 y~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~ 1020 (1354)
+.++.++..++.++..+.....+.+...++|.+++++++++|++||++.++|++++|+++|++.++..+...+..++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667778888888999999999999999999999999999999999999999999999999999999898888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHH
Q 000680 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVR-FVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN 1099 (1354)
Q Consensus 1021 ~~~i~~i~v~~~~~~~l~l~~l~~~~~~~-~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~ 1099 (1354)
+.+++.++++++++|+++++++.++++.. .+..++.+..++..+......+.+.+.+.|+++|+++||+|+.|+++.++
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 98999999999999999887655444433 34455666667777777788889999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccChhHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000680 1100 YLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFT-LTGTQVFLSRWYCYLA 1178 (1354)
Q Consensus 1100 ~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~vl~~~g~ls~g~~gl~l~ya~~-l~~~l~~l~~~~~~le 1178 (1354)
+.+..++..+..........+.....+++..+..+++...+.....|.++.|.+..++.|+.. ...++..+...+..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~ 305 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLG 305 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888877777666666666555555443333322222223688899988887777644 4567777888889999
Q ss_pred HHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHH
Q 000680 1179 NYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT 1258 (1354)
Q Consensus 1179 ~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKST 1258 (1354)
....|.+|+.++++.|+|.+.. ...++ .+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+|||||||
T Consensus 306 ~~~~s~~ri~~ll~~~~~~~~~--~~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKST 381 (574)
T PRK11160 306 QVIASARRINEITEQKPEVTFP--TTSTA--AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKST 381 (574)
T ss_pred HHHHHHHHHHHHHhCCCCCCCC--cccCC--CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHH
Confidence 9999999999999877653211 11111 1345789999999999765456999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhc
Q 000680 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISS 1337 (1354)
Q Consensus 1259 L~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~ 1337 (1354)
|+++|.|+|+|++|+|++||+|+++++.+++|++|++|||||+||+|||||||.... +.+|+|+++|++++++++++++
T Consensus 382 L~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~ 461 (574)
T PRK11160 382 LLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED 461 (574)
T ss_pred HHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC
Confidence 999999999999999999999999999999999999999999999999999996443 5799999999999999999999
Q ss_pred CCCCcCC----CCcccccc
Q 000680 1338 LPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1338 Lp~gldt----~G~n~s~~ 1352 (1354)
|+|||| .|.++|-|
T Consensus 462 -p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 462 -DKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred -ccccCchhcCCCCCCCHH
Confidence 999999 67888854
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-51 Score=514.57 Aligned_cols=407 Identities=19% Similarity=0.269 Sum_probs=351.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHH
Q 000680 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1354)
Q Consensus 941 y~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~ 1020 (1354)
++++.++..++.+++.++....+.+....++.++++++++.|.++|++...|++++|+++|++.+...+...+..++..+
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T PRK11176 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777788888888899999999999999999999999999999999999999999999999988888888999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHH
Q 000680 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNY 1100 (1354)
Q Consensus 1021 ~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~ 1100 (1354)
+.+++.++++++.+|+++++++..++++.++..+..+..++..+......+...+++.|.++|+.+||+|+.++++.+++
T Consensus 151 ~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~ 230 (582)
T PRK11176 151 ASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF 230 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHH
Confidence 99999999999999998887777767766666677777777777777778889999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 1101 LKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAA-LFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLAN 1179 (1354)
Q Consensus 1101 ~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~-~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~ 1179 (1354)
.+..+...+..........+.....+++..+....+. +....+..|.+++|.+.+++++...+..|+..+...+..++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 310 (582)
T PRK11176 231 DKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888777777777766666665544333322 223445679999999999999999999999999999999999
Q ss_pred HhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHH
Q 000680 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259 (1354)
Q Consensus 1180 ~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL 1259 (1354)
...+.+|+.++++.++|.+. +.. ...|..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||
T Consensus 311 ~~~~~~ri~~~~~~~~~~~~---~~~--~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTL 385 (582)
T PRK11176 311 GMAACQTLFAILDLEQEKDE---GKR--VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTI 385 (582)
T ss_pred HHHHHHHHHHHhcCCCcCCC---CCc--CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHH
Confidence 99999999999987765321 111 1124457899999999997665679999999999999999999999999999
Q ss_pred HHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCC--CCCCHHHHHHHHHHcCCchHHhc
Q 000680 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--GLYSDDEIWKALEKCQLKTTISS 1337 (1354)
Q Consensus 1260 ~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~--~~~sDeeI~~AL~~a~l~~~I~~ 1337 (1354)
+++|+|+|+|++|+|++||+|+++++.+++|++|++|||||++|+||||+||.-. ++++|+|+++|++.+++++++++
T Consensus 386 l~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~ 465 (582)
T PRK11176 386 ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINK 465 (582)
T ss_pred HHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999742 34899999999999999999999
Q ss_pred CCCCcCC----CCcccccc
Q 000680 1338 LPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1338 Lp~gldt----~G~n~s~~ 1352 (1354)
||+|||| .|.|+|-|
T Consensus 466 lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 466 MDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred cccccCceeCCCCCcCCHH
Confidence 9999999 47778754
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-51 Score=513.66 Aligned_cols=440 Identities=19% Similarity=0.286 Sum_probs=373.9
Q ss_pred HHHHHHHHHHhHHHHHHhhhcCC--CC-c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000680 908 AQSGFVGLQAAATYWLAYAIQIP--KI-T--SGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAP 982 (1354)
Q Consensus 908 ~~~~~~~~~~~~~~wl~~~~~~~--~~-~--~~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p 982 (1354)
+.++..++.+..++++...++.. .. . ...+.++++++.++..++.+++.++....+.+....++..+++++++.|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~ 101 (571)
T TIGR02203 22 AMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLP 101 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444445555556655444321 11 1 1122345666677778888999999999999999999999999999999
Q ss_pred CccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 983 MLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAREL 1062 (1354)
Q Consensus 983 ~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l 1062 (1354)
.++|++.+.|++++|+++|++.++..+...+..++..++.+++.++++++.+|+++++.+.++++..++..++.+..++.
T Consensus 102 ~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~ 181 (571)
T TIGR02203 102 VSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRI 181 (571)
T ss_pred HHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888888888888888888888
Q ss_pred HHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000680 1063 IRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT-AALFLV 1141 (1354)
Q Consensus 1063 ~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~-~~~~~v 1141 (1354)
.+......++..+++.|+++|+.+||+++.++++.+++.+..+...+..........+......++..+...+ ..+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (571)
T TIGR02203 182 SKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALF 261 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999999888887777777777666655555443332 233344
Q ss_pred HhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEE
Q 000680 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQL 1221 (1354)
Q Consensus 1142 l~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nV 1221 (1354)
.+..|.+++|.+..+.+++..+..|+..+...+..++....+.+|+.++++.++|.+. +..+.. +..++|+|+||
T Consensus 262 ~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~--~~~~~i~~~~v 336 (571)
T TIGR02203 262 QAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT---GTRAIE--RARGDVEFRNV 336 (571)
T ss_pred HHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCCCC--CCCCeEEEEEE
Confidence 5568999999999999999999999999999999999999999999999987665432 111111 24578999999
Q ss_pred EEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceeccccc
Q 000680 1222 KIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301 (1354)
Q Consensus 1222 sf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~ 1301 (1354)
+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++|+++++|||||+
T Consensus 337 ~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~ 416 (571)
T TIGR02203 337 TFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVV 416 (571)
T ss_pred EEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcc
Confidence 99997655579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCC--CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1302 LFRGSVRTNLDPLG--LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1302 LF~GTIR~NLdp~~--~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
+|+||||+||.-++ +++|+|+++||+++++++++.++|+|||| .|.|+|-|
T Consensus 417 lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 417 LFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred cccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 99999999997553 58999999999999999999999999998 47788864
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-51 Score=522.69 Aligned_cols=461 Identities=20% Similarity=0.268 Sum_probs=369.0
Q ss_pred cHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcC--CCC--cc-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 885 GWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKI--TS-GILIGVYAGVSTASAVFVYFRSFFA 959 (1354)
Q Consensus 885 ~~~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~--~~~--~~-~~~~~iy~~l~~~~~i~~~~~~~~~ 959 (1354)
+++.++.+++..++... ..+++.++...+..+.++.+...++. +.. .. ..+..+++++.++..++.+++.++.
T Consensus 126 ~~~~~~~~~~~~~~~~~--~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQFR--EVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred cHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666654333222 22222333344445556666555442 111 11 1223344555566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000680 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1354)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l 1039 (1354)
...+.+...+++.+++++++++|++||++.++|++++|+ +|++.+...+...+..++..++.+++.++++++++|++++
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 282 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTG 282 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 6999999988777777666666666667888899999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000680 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1354)
Q Consensus 1040 ~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1354)
+++..++++..+..+..+..++..+...+..+...+++.|+++|+.+||+||.|+.+.+++.+..++..+..+.......
T Consensus 283 i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (694)
T TIGR01846 283 VVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766666666666665555555555566677888999999999999999999999999999999988888777777777
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC
Q 000680 1120 WLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP 1198 (1354)
Q Consensus 1120 wl~~~l~~l~~~~~~~~-~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~ 1198 (1354)
+.....+++..+..+++ .+.+.++..|.++.|.+.++.+++..+..|+..+...+.+++....+.+|+.++++.|+|.+
T Consensus 363 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 442 (694)
T TIGR01846 363 IAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPR 442 (694)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 76666666555433332 23344556899999999999999999999999999999999999999999999998877643
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcC
Q 000680 1199 AIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1354)
Q Consensus 1199 ~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDG 1278 (1354)
.. +..+. .+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+|||
T Consensus 443 ~~--~~~~~--~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 443 SA--GLAAL--PELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred CC--CCCCC--CCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 21 11111 123578999999999987666799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1279 vDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
+|+++++.+++|+++++|||||++|+|||||||...+ +++|+++++|++.++++++++++|+|||| .|.|+|-|
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 597 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHH
Confidence 9999999999999999999999999999999997543 57999999999999999999999999999 47788865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-49 Score=498.17 Aligned_cols=504 Identities=16% Similarity=0.148 Sum_probs=362.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 278 ENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQE-GLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1354)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~-~~~~-g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~ 355 (1354)
.++...++.++.+.+....|.+...+++.+.+.+. .... .+.+++++++. +++.....|...++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~----~~~~~~~~~~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPA----SFINSAIKYLLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777788888999999999998886543321 1111 11122222222 233333334466677788888888
Q ss_pred HHHHHHhcCCcc----cCCCCCHHHHHHHHHhHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHH
Q 000680 356 AVYQKQLKLSSL----GRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLGALPG-LVLFLI 429 (1354)
Q Consensus 356 ~iy~K~L~ls~~----~~~~~~~G~ivNlms~D~~~i~~~~-~~~~~~w~~plqi~~~~~~L~~~lG~~~l~g-l~v~~i 429 (1354)
.++++.++-... ..++ .+|++.+.++.|++.+.+.. ..+..+...++.++.+++.++..++|....+ ++.+.+
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 777777663211 1122 57999999999999998854 3456666777888888888887677654332 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM 509 (1354)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~ 509 (1354)
.+.+...+.+.+.+..++..+..++-....+|.++|+++||.|+-|+...++.++.-++-.+..++.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34445556777888888888899999999999999999999999999877776554444333333333222221111111
Q ss_pred HH----HHHHHHHHHHHHHhCC----CCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000680 510 SP----TIISSVIFLGCALTGS----APLNASTIFTV----LATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE 577 (1354)
Q Consensus 510 ~p----~~v~~~~f~~~~l~~~----~~Lt~~~~Ft~----l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e 577 (1354)
.. ..+..+..+..++... +.+|.+..+.. ..++..+..|+..+...+..+.++.++.+|+.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111111112122211 46787754332 334667789999999999999999999999999996422
Q ss_pred C-Cc-----chhhh-----------------ccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCC
Q 000680 578 L-NN-----DDVRR-----------------ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGA 634 (1354)
Q Consensus 578 ~-~~-----~~~~~-----------------~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~Gs 634 (1354)
. +. ..... .......+.|+++|++|+|+.+ +++|+|+||++++||+++|+|||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceEEECCCCEEEEECCCCC
Confidence 1 10 00000 0011123469999999999642 4699999999999999999999999
Q ss_pred CHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCCCcHHHHHhcCC--------CCCHHHHHHHHHHhccHHHHhc
Q 000680 635 GKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGK--------PMDKARYDKAIKACALDKDINN 704 (1354)
Q Consensus 635 GKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~~~ti~eni~~g~--------~~~~~~~~~~~~~~~l~~~l~~ 704 (1354)
|||||+++|+|+++|++|+|.+++ +++|+||+|+++++|++|||.++. ..++++..++++.+++.+.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999998864 699999999999999999999874 2345677889999999888877
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh
Q 000680 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784 (1354)
Q Consensus 705 l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~ 784 (1354)
|.|.+|..+ .+.+||||||||++||||++++|++++||||||+||+++++.+.+.+.+ .|+|+|+|||+++.++.
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKY 644 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHh
Confidence 888888875 5789999999999999999999999999999999999999998775533 38999999999999989
Q ss_pred cCEEEEEeC
Q 000680 785 VDRILVLEG 793 (1354)
Q Consensus 785 ~d~i~~l~~ 793 (1354)
||++++|++
T Consensus 645 ~d~il~l~~ 653 (659)
T TIGR00954 645 HEYLLYMDG 653 (659)
T ss_pred CCEEEEEeC
Confidence 999999963
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-49 Score=498.49 Aligned_cols=462 Identities=21% Similarity=0.268 Sum_probs=366.0
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcC--CCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 887 KPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKIT---SGILIGVYAGVSTASAVFVYFRSFFAAH 961 (1354)
Q Consensus 887 ~~y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~--~~~~---~~~~~~iy~~l~~~~~i~~~~~~~~~~~ 961 (1354)
+.+++|++..++.. .+.+++.+....+.+..++.+...++. .+.. ....+.+++++.++..++.+++.++...
T Consensus 7 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 7 AALWPFVRPYRGRV--LAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555655433222 222223333444455555555554432 1111 1122334444455566677788888889
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000680 962 LGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVA 1041 (1354)
Q Consensus 962 ~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~ 1041 (1354)
.+.+....++..+++++++.|.++|++...|++++|+++|++.++......+..++..++.+++.++++++++|++++++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888888888888889999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000680 1042 IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWL 1121 (1354)
Q Consensus 1042 l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1121 (1354)
+..++++..+..++.+..+...+.....+....+++.|+++|+.+||+|+.++++.+++.+..+...+..........|+
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666667777777777777888889999999999999999999999999999999887777666555555555
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCC
Q 000680 1122 ILRVEALQNLTL-FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAI 1200 (1354)
Q Consensus 1122 ~~~l~~l~~~~~-~~~~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~ 1200 (1354)
......+..+.. +...+.+..+..|.+++|.+..+..|+..+..|+..+...+.++.+...+.+|+.++++.++|.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 544444333222 2222234445689999999999999999999999999999999999999999999999876553211
Q ss_pred CCCCCCCCCCCCcceEEEEEEEEEeCCCC-CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCe
Q 000680 1201 VEDKRPPSSWPFKGRIELRQLKIRYRPNA-PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1354)
Q Consensus 1201 ~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~-~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGv 1279 (1354)
. ...+..+|..+.|+|+||+|+|+++. +++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||+
T Consensus 325 ~--~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~ 402 (576)
T TIGR02204 325 A--HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGV 402 (576)
T ss_pred C--CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 1 11112234557899999999997532 56999999999999999999999999999999999999999999999999
Q ss_pred eCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1280 DI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+++++.+++|++++++||||++|+|||||||...+ +.+|++++++|+++++.++++++|+|+|| .|.|+|.|
T Consensus 403 ~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgG 480 (576)
T TIGR02204 403 DLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGG 480 (576)
T ss_pred EHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHH
Confidence 999999999999999999999999999999998543 47899999999999999999999999997 47788865
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=493.77 Aligned_cols=444 Identities=18% Similarity=0.216 Sum_probs=349.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcCCCC-c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000680 905 GVLAQSGFVGLQAAATYWLAYAIQIPKI-T-SGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAP 982 (1354)
Q Consensus 905 ~~~~~~~~~~~~~~~~~wl~~~~~~~~~-~-~~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p 982 (1354)
.+++.++...+.+..++++...++.-.. . ...++.+++++.++..+..++......+...+....+..++++++++.|
T Consensus 24 ~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 103 (588)
T PRK13657 24 LAVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLP 103 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3334444455566666666665543111 1 1112233333333333444444445555556666667779999999999
Q ss_pred CccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 983 MLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAREL 1062 (1354)
Q Consensus 983 ~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l 1062 (1354)
..+|++.+.|++++|+++|++.+...+...+..++..++..++.++++++.+|+++++.+.+++++..+..++.+..++.
T Consensus 104 ~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~ 183 (588)
T PRK13657 104 LAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDG 183 (588)
T ss_pred HHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887777777777777777777788889999998888777777777788888888888
Q ss_pred HHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000680 1063 IRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT-AALFLV 1141 (1354)
Q Consensus 1063 ~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~-~~~~~v 1141 (1354)
.+......+...+++.|+++|+.+||+|+.++.+.+++.+..+...+..........+.....+++..+..++ ..+.+.
T Consensus 184 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 263 (588)
T PRK13657 184 QAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAA 263 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999999998888777766555555555444444433332222 223344
Q ss_pred HhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEE
Q 000680 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQL 1221 (1354)
Q Consensus 1142 l~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nV 1221 (1354)
.+..|.+++|.+..++.++..+..++..+...+.++..+..+.+|+.++++.+++.+.. ++..+.. +..+.|+|+||
T Consensus 264 ~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~~~~--~~~~~I~~~~v 340 (588)
T PRK13657 264 LVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-PGAIDLG--RVKGAVEFDDV 340 (588)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-CCCCCcC--CCCCeEEEEEE
Confidence 55689999999999999999999999999999999999999999999998765442211 1111111 23568999999
Q ss_pred EEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceeccccc
Q 000680 1222 KIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301 (1354)
Q Consensus 1222 sf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~ 1301 (1354)
+|+|+++ +++|+|+||+++|||+|||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++|++|++|||||.
T Consensus 341 sf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 419 (588)
T PRK13657 341 SFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAG 419 (588)
T ss_pred EEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcc
Confidence 9999643 469999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1302 LFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1302 LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
+|+||||+||.-+. +.+|+|+++|++++++++++.++|+|+|| .|+|+|-|
T Consensus 420 lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 475 (588)
T PRK13657 420 LFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475 (588)
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence 99999999997443 57899999999999999999999999999 46788854
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=488.77 Aligned_cols=457 Identities=18% Similarity=0.210 Sum_probs=354.4
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 889 FMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK--ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKA 966 (1354)
Q Consensus 889 y~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~~--~~~~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~ 966 (1354)
+++|++..+.. +.+.+++.++...+.++.++.++..++.-. .....++.+++++.++..+..++........+.+.
T Consensus 10 l~~~l~~~k~~--~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (585)
T TIGR01192 10 ALSYLNVHKNR--VLLIVIANITLAAITIAEPILFGRIIDAISSKSDVLPTLALWAGFGVFNTIAYVLVAREADRLAHGR 87 (585)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555543332 223333334444555566666555444211 11111222222333334444455555555666667
Q ss_pred HHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000680 967 SKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMV 1046 (1354)
Q Consensus 967 s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~ 1046 (1354)
..+++++++++++++|++||+++++|++++|+++|++.+.......+..++..++.+++.+++++.++|.++++++.+++
T Consensus 88 ~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 167 (585)
T TIGR01192 88 RATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGI 167 (585)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778899999999999999999999999999999999998888778777777787888888889999999988887778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000680 1047 AVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVE 1126 (1354)
Q Consensus 1047 ~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~ 1126 (1354)
++.++.+.+.+..++..+......+...+++.|+++|+++||+|+.++.+.+++.+..++..+..+.......+......
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (585)
T TIGR01192 168 LYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNR 247 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888889999999999999999999999999999988888766665554443333333333
Q ss_pred HHHHHHHH-HHHHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCC
Q 000680 1127 ALQNLTLF-TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKR 1205 (1354)
Q Consensus 1127 ~l~~~~~~-~~~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~ 1205 (1354)
++..+..+ +..+.++++..|.++.|.+.+++.|+..+..++..+...+.++.....+.+|+.++.+.+++... ...
T Consensus 248 ~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~ 324 (585)
T TIGR01192 248 MASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PAD 324 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---Ccc
Confidence 33332222 22233445568999999999999999999999999999999999999999999999876554321 111
Q ss_pred CCCCC-CCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCC
Q 000680 1206 PPSSW-PFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM 1284 (1354)
Q Consensus 1206 ~~~~w-p~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i 1284 (1354)
++ .+ +..|.|+|+||+|+|+++. ++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|++||+|++++
T Consensus 325 ~~-~~~~~~~~i~~~~v~~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~ 402 (585)
T TIGR01192 325 AP-ELPNVKGAVEFRHITFEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTV 402 (585)
T ss_pred CC-CCCCCCCeEEEEEEEEECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhC
Confidence 11 12 2357899999999997543 599999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1285 GLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1285 ~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
+.+++|+++++|||||.+|+||||+||.... +++|+|+++|++.+++++++.++|+|+|| .|.++|-|
T Consensus 403 ~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgG 475 (585)
T TIGR01192 403 TRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475 (585)
T ss_pred CHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHH
Confidence 9999999999999999999999999997543 47899999999999999999999999997 46677754
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=491.02 Aligned_cols=410 Identities=17% Similarity=0.249 Sum_probs=338.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHH
Q 000680 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1354)
Q Consensus 938 ~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~ 1017 (1354)
+++++++.++..++.+++.++....+.+...++|.++++++++.|++||++.++|++++|+++|++.++......+..++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~ 118 (569)
T PRK10789 39 IGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLV 118 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444455566677778788888889999999999999999999999999999999999999999999977777777777
Q ss_pred HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHH
Q 000680 1018 ASGTELLAIIGIM-TFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096 (1354)
Q Consensus 1018 ~~~~~~i~~i~v~-~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f 1096 (1354)
..++..++.++++ ++++|++.++.+..++++.++.+.+.+..++..+..+...+.+.+++.|+++|+++||+|+.|+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 198 (569)
T PRK10789 119 DSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQ 198 (569)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHH
Confidence 7666655555555 478998888777666776677777777777777777777888999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLT-LFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYC 1175 (1354)
Q Consensus 1097 ~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~-~~~~~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~ 1175 (1354)
.+++.+..++..+..........+..........+. ++...+.+.++..|.++.|.+..++.|...+..|+..+...+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~ 278 (569)
T PRK10789 199 SALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFN 278 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888777666655544444433333332222 2222233345568999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCcc
Q 000680 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSG 1255 (1354)
Q Consensus 1176 ~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSG 1255 (1354)
+++...++.+|+.++++.++|.+.. ....+ +..|.|+|+||+|+|+++..++|+|+||+|+|||++||||+||||
T Consensus 279 ~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsG 353 (569)
T PRK10789 279 IVERGSAAYSRIRAMLAEAPVVKDG--SEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSG 353 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCC--CCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCC
Confidence 9999999999999999876553211 11111 235789999999999765556999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCC-CCCCHHHHHHHHHHcCCchH
Q 000680 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTT 1334 (1354)
Q Consensus 1256 KSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~AL~~a~l~~~ 1334 (1354)
||||+++|.|+|+|++|+|++||+|+++++.+++|+++++|||||++|+||||+||... .+++|+++++|++.++++++
T Consensus 354 KSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~ 433 (569)
T PRK10789 354 KSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDD 433 (569)
T ss_pred HHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999754 35799999999999999999
Q ss_pred HhcCCCCcCC----CCcccccc
Q 000680 1335 ISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1335 I~~Lp~gldt----~G~n~s~~ 1352 (1354)
+.++|+|+|| .|.++|-|
T Consensus 434 i~~lp~gl~t~~~~~g~~LSgG 455 (569)
T PRK10789 434 ILRLPQGYDTEVGERGVMLSGG 455 (569)
T ss_pred HHhCcCcccceecCCCCcCCHH
Confidence 9999999998 46677754
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=494.56 Aligned_cols=468 Identities=19% Similarity=0.237 Sum_probs=341.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000680 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1354)
Q Consensus 344 ~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L~~~lG~~~l~ 422 (1354)
..|++.-..|-..++++.++-+..-.+...+|+|+|..|.|++.+++... .+.......++++.++++.-...-+..++
T Consensus 884 ~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~ 963 (1381)
T KOG0054|consen 884 KGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIA 963 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 34455555555555666665544444567899999999999999987544 34444444454444443333322233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY 502 (1354)
Q Consensus 423 gl~v~~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~ 502 (1354)
.+++.+++..+..++.+-.+..++--...+.-=.+..+|.|+|+-+|+.|+.|+.|.++-...-+.-.+.. .+..+.
T Consensus 964 ~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~---f~~~~a 1040 (1381)
T KOG0054|consen 964 IIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAF---FLSISA 1040 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHH---HHHHHH
Confidence 33333333333222222222222222233444566899999999999999999999887655444332211 111111
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000680 503 GTV----IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHEL 578 (1354)
Q Consensus 503 ~~~----~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~ 578 (1354)
+.. +-..+-.++..+++.. ++..++..+++.|=-+++.--.+..-+..+-.....+-.-.+|.+|+.+|.+.++.
T Consensus 1041 ~RWla~Rle~ig~~~v~~~al~~-vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E 1119 (1381)
T KOG0054|consen 1041 NRWLAVRLELLGNLVVLIAALFA-VLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE 1119 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC
Confidence 111 1111222222222222 12222236788877777776666666666666666666678999999999984332
Q ss_pred Ccchhhhc-cc--cCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Q 000680 579 NNDDVRRI-SL--QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1354)
Q Consensus 579 ~~~~~~~~-~~--~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~ 655 (1354)
.+...+.. ++ -++++.|+|+|.+..|.++ .+++|+||||+|++||.+||||++|||||||+++|.++.+|.+|+|.
T Consensus 1120 ~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~ 1198 (1381)
T KOG0054|consen 1120 APLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEIL 1198 (1381)
T ss_pred CCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEE
Confidence 22112111 22 2467899999999999987 46899999999999999999999999999999999999999999999
Q ss_pred EcC-------------eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 656 LYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 656 ~~g-------------~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
+|| +++.+||+|.+|+||+|.|+.--.++.+++..++++.|.|++.++.+|+|-+++|.|+|.|+|=
T Consensus 1199 IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~Sv 1278 (1381)
T KOG0054|consen 1199 IDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSV 1278 (1381)
T ss_pred EcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCCh
Confidence 998 5999999999999999999997778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecCh
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~ 802 (1354)
||||-+|||||+.++++|++|||+|+++|++|-..| ++.++..-+++|||.+.|+++.+-++|||+|||+|+|+|.|+|
T Consensus 1279 GQRQLlCLARALLr~skILvLDEATAsVD~~TD~lI-Q~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP 1357 (1381)
T KOG0054|consen 1279 GQRQLLCLARALLRKSKILVLDEATASVDPETDALI-QKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSP 1357 (1381)
T ss_pred HHHHHHHHHHHHhccCCEEEEecccccCChHHHHHH-HHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCCh
Confidence 999999999999999999999999999999998764 6677778899999999999999999999999999999999999
Q ss_pred HHHHhcCc-hHHHHHH
Q 000680 803 QELLLAGT-AFEQLVN 817 (1354)
Q Consensus 803 ~~l~~~~~-~~~~~~~ 817 (1354)
++|+++++ .|.+++.
T Consensus 1358 ~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1358 AELLSDKDSLFSSLLK 1373 (1381)
T ss_pred HHHHhCCcchHHHHHH
Confidence 99998754 4544543
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-48 Score=484.52 Aligned_cols=436 Identities=15% Similarity=0.125 Sum_probs=333.2
Q ss_pred HHHHHHHhHHHHHHhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccC
Q 000680 911 GFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTP 990 (1354)
Q Consensus 911 ~~~~~~~~~~~wl~~~~~~~~~~~~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p 990 (1354)
......+..++.+..+.+.........+..++++.++..++.++..++....+.+...++|.++++++++.|++||++.+
T Consensus 29 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~ 108 (555)
T TIGR01194 29 AGGLAIIALLASINNAIHEENFLGQGSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRG 108 (555)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcC
Confidence 33344455555666555432111111222344555666778888889999999999999999999999999999999999
Q ss_pred cchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000680 991 VGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTK 1070 (1354)
Q Consensus 991 ~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~ 1070 (1354)
+|++++|+++|++.++..+.. +..++..++.+++.++++++.+|.++++++.++++..++..+..+..++..+......
T Consensus 109 ~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (555)
T TIGR01194 109 AHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEE 187 (555)
T ss_pred cchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999998754 6677777788888888999999999888776666665655555555566666666677
Q ss_pred chHHHHHHHHhcchHHHHhcccHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 000680 1071 APVMNYTAETSQGVVTIRAFNMVD--RFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYV 1148 (1354)
Q Consensus 1071 spl~s~~~Etl~Gl~tIRaf~~e~--~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~vl~~~g~l 1148 (1354)
+.+.+++.|.+.|+++||+|+.++ ...+++.+..++..+................+++..+...+..+ .....+.+
T Consensus 188 ~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 265 (555)
T TIGR01194 188 DAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALF--AAAMFASI 265 (555)
T ss_pred HHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcCC
Confidence 889999999999999999999954 45666666666655554433322222222222221111111111 11123788
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCC--CC-CCC--CCCCCCcceEEEEEEEE
Q 000680 1149 APGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIV--ED-KRP--PSSWPFKGRIELRQLKI 1223 (1354)
Q Consensus 1149 s~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~--~~-~~~--~~~wp~~G~I~f~nVsf 1223 (1354)
+.|.+..++.|+..+..|+..+...+.+++...+|.+|+.++++.+.+++... ++ ... .+.....+.|+|+||+|
T Consensus 266 t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f 345 (555)
T TIGR01194 266 DAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHM 345 (555)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEE
Confidence 99999999999999999999999999999999999999999986432221110 00 000 01112347899999999
Q ss_pred EeCCC---CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccc
Q 000680 1224 RYRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEP 1300 (1354)
Q Consensus 1224 ~Y~~~---~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp 1300 (1354)
+|++. .+++|+|+||+|++||++||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++|+++++|||||
T Consensus 346 ~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 425 (555)
T TIGR01194 346 NPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADF 425 (555)
T ss_pred EeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccCh
Confidence 99643 236999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCCCCcccccc
Q 000680 1301 TLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSGKLFSAA 1352 (1354)
Q Consensus 1301 ~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt~G~n~s~~ 1352 (1354)
++|++|+|+|+.| +.+|++++++++.++++++++++|+||||. .++|-|
T Consensus 426 ~lf~~ti~~n~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-~~LSgG 474 (555)
T TIGR01194 426 HLFDDLIGPDEGE--HASLDNAQQYLQRLEIADKVKIEDGGFSTT-TALSTG 474 (555)
T ss_pred hhhhhhhhccccc--chhHHHHHHHHHHcCCchhhcccccccCCc-ccCCHH
Confidence 9999999999854 468999999999999999999999999985 666643
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=453.11 Aligned_cols=391 Identities=18% Similarity=0.289 Sum_probs=314.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000680 949 AVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIG 1028 (1354)
Q Consensus 949 ~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~ 1028 (1354)
+++.-+|+++......-+.+.+--++++|+..++++|+-...+|+++.-+.+-.+.+. .+......+...++.+...++
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~v 351 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMV 351 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhh
Confidence 5667778888888888899999999999999999999999999998888877777666 455555555555555555554
Q ss_pred HH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHH
Q 000680 1029 IM-TFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDID 1107 (1354)
Q Consensus 1029 v~-~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~ 1107 (1354)
.. ...+|++.++++..+.+|.++......--.+.+|....+.-.-.+.-.+++-+..|+|-|++|+...++|.+.++.+
T Consensus 352 YF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Y 431 (790)
T KOG0056|consen 352 YFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKY 431 (790)
T ss_pred hhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHH
Confidence 33 35789999988888888776433222222222333333333334456788999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000680 1108 ASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVER 1186 (1354)
Q Consensus 1108 ~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveR 1186 (1354)
++..+.....-..+...-..+..+.++...++ ++.+..+.++.|...++.+|.+++..|++|+...+..+|++.+-.||
T Consensus 432 qk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEn 511 (790)
T KOG0056|consen 432 QKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMEN 511 (790)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHH
Confidence 99888776665555544443333333333332 33445788999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcc
Q 000680 1187 IKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1187 I~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~ 1266 (1354)
++++++.++|-. +....|+---.+|.|+|+||+|.|+|+.| ||+||||+++||+.||+||+||+||||++.+|+||
T Consensus 512 mfdllkee~eVv---d~P~a~pl~~~~G~i~fsnvtF~Y~p~k~-vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRf 587 (790)
T KOG0056|consen 512 MFDLLKEEPEVV---DLPGAPPLKVTQGKIEFSNVTFAYDPGKP-VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRF 587 (790)
T ss_pred HHHHhhcCchhh---cCCCCCCccccCCeEEEEEeEEecCCCCc-eeecceEEecCCcEEEEECCCCCchhHHHHHHHHH
Confidence 999998666532 22112222235799999999999999876 99999999999999999999999999999999999
Q ss_pred cCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC
Q 000680 1267 VEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS 1344 (1354)
Q Consensus 1267 ~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt 1344 (1354)
||.++|+|+|||+||+++..++||++||+||||.+||++||-+||.... .++|||+.+|++.|++||-|.++|+||+|
T Consensus 588 fdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t 666 (790)
T KOG0056|consen 588 FDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNT 666 (790)
T ss_pred hhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhh
Confidence 9999999999999999999999999999999999999999999997433 47999999999999999999999999999
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-49 Score=439.19 Aligned_cols=411 Identities=23% Similarity=0.314 Sum_probs=317.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHH
Q 000680 400 SLALQLFLAIGVLFGVVGLGALPGLVLFLIC-GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKF 478 (1354)
Q Consensus 400 ~~plqi~~~~~~L~~~lG~~~l~gl~v~~i~-~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f 478 (1354)
...+++.+..+++|+..||...+..++.+++ ..+.......-...+++..++..+.-....+.|-+-.++|.|+=|+.+
T Consensus 65 P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e 144 (497)
T COG5265 65 PTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYE 144 (497)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhh
Confidence 3457899999999998887654443333333 333222233333344444444444445678889999999999999887
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 479 KSLIESRREK----EFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPE 554 (1354)
Q Consensus 479 ~~~i~~~R~~----El~~l~~~~~~~~~~~~~~~~~p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl~~lp~ 554 (1354)
.++-.+..+. +++.......++.....++...- ... ......-+..+.+|.+.....-++...+..|++.+..
T Consensus 145 ~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l--~~~-m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~ 221 (497)
T COG5265 145 AVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGL--RVM-MTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGF 221 (497)
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHH-HhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHH
Confidence 6665444433 33221111122222222211111 111 1111112234789999988888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcchhhhcccc-CCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCC
Q 000680 555 ALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQ-KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVG 633 (1354)
Q Consensus 555 ~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~-~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~G 633 (1354)
....+-|+++..++..+-+..+-...+..+-.+.. ...+.|.|+|++|.|+++ +++|+++||++++|+.++|||++|
T Consensus 222 ~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG 299 (497)
T COG5265 222 SYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESG 299 (497)
T ss_pred HHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCC
Confidence 99999999999999988775432111111111111 345679999999999875 689999999999999999999999
Q ss_pred CCHHHHHHHHhCCccCCCcEEEEcCe-------------EEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccH
Q 000680 634 AGKSSLLYAILGEIPKISGTVNLYGS-------------IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALD 699 (1354)
Q Consensus 634 sGKStLl~~i~g~~~~~~G~i~~~g~-------------i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~ 699 (1354)
+||||+++.+.+++++++|.|.++|+ ||.|||+..+||.|+..||.+|++ ..++....+.+++++.
T Consensus 300 ~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~ 379 (497)
T COG5265 300 AGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIH 379 (497)
T ss_pred CcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhh
Confidence 99999999999999999999999983 999999999999999999999987 4567788899999999
Q ss_pred HHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCc
Q 000680 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1354)
Q Consensus 700 ~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 779 (1354)
+.++.+|+|.+|.|||+|-.|||||||||++||++..+|+|++|||.|||||.|+++.|-. .++...+|+|.+++.|++
T Consensus 380 ~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~-~l~~~~~~rttlviahrl 458 (497)
T COG5265 380 DFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA-ALREVSAGRTTLVIAHRL 458 (497)
T ss_pred HHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH-HHHHHhCCCeEEEEeehh
Confidence 9999999999999999999999999999999999999999999999999999999999854 445666899999999999
Q ss_pred chhhhcCEEEEEeCCeEEEecChHHHHhcCchHHHHH
Q 000680 780 EFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816 (1354)
Q Consensus 780 ~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 816 (1354)
+.+-.||.|+||++|+|+|.|+++|+++.++.|.++.
T Consensus 459 sti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw 495 (497)
T COG5265 459 STIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMW 495 (497)
T ss_pred hhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHh
Confidence 9999999999999999999999999999998887764
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=440.13 Aligned_cols=404 Identities=20% Similarity=0.270 Sum_probs=337.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHH
Q 000680 943 GVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTE 1022 (1354)
Q Consensus 943 ~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~ 1022 (1354)
++++...+..|+..+..+....++-.++|.++|+++...+..-......|+++||+..|++.+|...-..+...+..++.
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~ 145 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVL 145 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHH
Confidence 45667778888888899999999999999999999999999999999999999999999999999988888888888887
Q ss_pred HHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHH
Q 000680 1023 LLAIIGIMTFVTWQVLVVA-IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101 (1354)
Q Consensus 1023 ~i~~i~v~~~~~~~l~l~~-l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~ 1101 (1354)
.+++++.+.+++|++.+.+ +.++.....+...+.+..|...+.-...+..+.+++.|-+.|....+.||+++++.+.+.
T Consensus 146 ~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~ 225 (573)
T COG4987 146 IAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225 (573)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 7778788888888886644 344444455666677778888888888999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000680 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTLF-TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLS-RWYCYLAN 1179 (1354)
Q Consensus 1102 ~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~-~~~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~-~~~~~le~ 1179 (1354)
+.-+...+..........|-...+.++..+.+. ..+..+.....|..+.-.+.+++..++....++.-+. ..+.++..
T Consensus 226 ~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq 305 (573)
T COG4987 226 ATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQ 305 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhH
Confidence 999999999999999999998888877776555 2333333344565553333333333344455555555 55678889
Q ss_pred HhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcc-eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHH
Q 000680 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKG-RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT 1258 (1354)
Q Consensus 1180 ~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G-~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKST 1258 (1354)
...|.+|+.+..+.++|.... +.. -|..| .++++||+|+|+.+.++||+|+||++++||||||+|||||||||
T Consensus 306 ~~~Sa~Rl~~i~~q~~e~~~~--~~~----~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 306 VIASARRLNDILDQKPEVTFP--DEQ----TATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred HHHHHHHHhhhccCCcccCCC--ccc----cCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHH
Confidence 999999999998877765432 111 12222 79999999999888888999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhc
Q 000680 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISS 1337 (1354)
Q Consensus 1259 L~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~AL~~a~l~~~I~~ 1337 (1354)
++++|.|-|+|++|+|..+|+|++.++-+++|+.|++++|.++||+||+|+||.-- .++||||+|+||++++|++++++
T Consensus 380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~ 459 (573)
T COG4987 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLES 459 (573)
T ss_pred HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999522 24899999999999999999999
Q ss_pred CCCCcCC----CCcccccc
Q 000680 1338 LPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1338 Lp~gldt----~G~n~s~~ 1352 (1354)
.|+||+| +|.++|-|
T Consensus 460 ~p~gl~t~lge~G~~LSGG 478 (573)
T COG4987 460 APDGLNTWLGEGGRRLSGG 478 (573)
T ss_pred ChhhhhchhccCCCcCCch
Confidence 9999999 68888854
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=468.20 Aligned_cols=430 Identities=15% Similarity=0.151 Sum_probs=336.2
Q ss_pred HHHHHHHhHHHHHHhhhcCC----CCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 000680 911 GFVGLQAAATYWLAYAIQIP----KIT-SGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLF 985 (1354)
Q Consensus 911 ~~~~~~~~~~~wl~~~~~~~----~~~-~~~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~f 985 (1354)
+...+.+..++.+...++.- ... ...++.+++++.++..++.+++.++....+.+....++.++++++++.|+.
T Consensus 17 ~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~- 95 (544)
T TIGR01842 17 VINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLR- 95 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-
Confidence 33444555566555554421 111 112334445555667778888889999999999999999999999999984
Q ss_pred ccccCcchHHHHHhhcHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 986 FDSTPVGRILTRLSSDLSILDFDIPF-SIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIR 1064 (1354)
Q Consensus 986 Fd~~p~G~IlnRfs~Di~~id~~l~~-~l~~~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~r 1064 (1354)
..|..++++++|++.++..+.. .+..++..++.++ .++++++++|++.++++..++++.++..++.+..++..+
T Consensus 96 ----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~ 170 (544)
T TIGR01842 96 ----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLK 170 (544)
T ss_pred ----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3367789999999999987766 4555555555444 345678889998777665555555555555555566666
Q ss_pred HHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Q 000680 1065 INGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLT-LFTAALFLVLI 1143 (1354)
Q Consensus 1065 l~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~-~~~~~~~~vl~ 1143 (1354)
...+..+...+++.|+++|+++||+|+.++.+.+++.+..++..+.................++..+. +++.++.++++
T Consensus 171 ~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 250 (544)
T TIGR01842 171 EATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLA 250 (544)
T ss_pred HHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788899999999999999999999999999999888776666554444443333333333322 22223334455
Q ss_pred cCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEE
Q 000680 1144 PRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKI 1223 (1354)
Q Consensus 1144 ~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf 1223 (1354)
..|.+++|.+.+++.|...+..|+..+...+.+++....+.+|+.++++.++|.+. ....+ +..+.|+|+||+|
T Consensus 251 ~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~~~~v~~ 324 (544)
T TIGR01842 251 IDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLSVENVTI 324 (544)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEEEEEEEE
Confidence 68999999999999999999999999999999999999999999999987665321 11111 2357899999999
Q ss_pred EeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceeccccccc
Q 000680 1224 RYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303 (1354)
Q Consensus 1224 ~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF 1303 (1354)
+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+.+|+++++|||||++|
T Consensus 325 ~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf 404 (544)
T TIGR01842 325 VPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELF 404 (544)
T ss_pred EcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccc
Confidence 99765557999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1304 RGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1304 ~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
+||+|+||..++ +++|+|+++|++.++++++++++|+|+|| .|.++|-|
T Consensus 405 ~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgG 458 (544)
T TIGR01842 405 PGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGG 458 (544)
T ss_pred cccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHH
Confidence 999999997554 48999999999999999999999999999 47788754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-46 Score=437.16 Aligned_cols=413 Identities=18% Similarity=0.206 Sum_probs=353.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHH
Q 000680 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015 (1354)
Q Consensus 936 ~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~ 1015 (1354)
.+++..++..++..+..+.+.......+.++...+|.++++++.+.+..|-+..|+|+....++.-++.++..+...+..
T Consensus 41 ~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq 120 (559)
T COG4988 41 PLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQ 120 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677788888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHH
Q 000680 1016 VAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDR 1095 (1354)
Q Consensus 1016 ~~~~~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~ 1095 (1354)
++.+.+..+..++.+++.+|...++.+..+|+...+.......++...+..-.+...+.+||-+.++|+.|+|+|++.+.
T Consensus 121 ~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~ 200 (559)
T COG4988 121 MFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEA 200 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHH
Confidence 99999999999999999999987766554444444444455556666666777788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC-CccChhHHHHHHHHHHHHHHHHHHHHHH
Q 000680 1096 FFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV-LIPR-GYVAPGLVGLSLSYAFTLTGTQVFLSRW 1173 (1354)
Q Consensus 1096 f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~v-l~~~-g~ls~g~~gl~l~ya~~l~~~l~~l~~~ 1173 (1354)
..++..+.-.+..+..+...+..---+..+|++..+.+..+++.+. .+.. |.++....-+++..+.-+..|+..+...
T Consensus 201 ~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~ 280 (559)
T COG4988 201 TEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSF 280 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999888888888877776666666667788888887776666543 2334 7888888888889999999999999999
Q ss_pred HHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCC
Q 000680 1174 YCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTG 1253 (1354)
Q Consensus 1174 ~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTG 1253 (1354)
|..-.++..+.|.+..+++.|.+.+... ......|-...+|+.+|++++|+++. ++++|+||+++|||++||||+||
T Consensus 281 fH~~~~g~aa~d~i~~~l~~~~~~~~~~--~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SG 357 (559)
T COG4988 281 FHAAAAGEAAADKLFTLLESPVATPGSG--EKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASG 357 (559)
T ss_pred HHHHhhhhhHHHHHHHHhcCCCCCCCCc--cccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCC
Confidence 9999999999999999998777644211 11123333345677779999997665 69999999999999999999999
Q ss_pred ccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCc
Q 000680 1254 SGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLK 1332 (1354)
Q Consensus 1254 SGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~ 1332 (1354)
||||||+++|.||.+|++|+|.+||+|+++++.+++|+++++|||+|++|+|||||||.-++ +.|||||++|++++++.
T Consensus 358 aGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~ 437 (559)
T COG4988 358 AGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLL 437 (559)
T ss_pred CCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHH
Confidence 99999999999999999999999999999999999999999999999999999999996444 37999999999999999
Q ss_pred hHHhcCCCCcCC----CCcccccc
Q 000680 1333 TTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1333 ~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
||+.. |+|+|| +|.+.|.|
T Consensus 438 ~~v~~-p~GLdt~ige~G~~LSgG 460 (559)
T COG4988 438 EFVPK-PDGLDTVIGEGGAGLSGG 460 (559)
T ss_pred HhhcC-CCcccchhccCCCCCCHH
Confidence 99999 999998 68888865
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=482.76 Aligned_cols=206 Identities=20% Similarity=0.350 Sum_probs=167.8
Q ss_pred CcEEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 593 RSVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
..++++|++++|+... ..++|+||||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 4689999999996422 34799999999999999999999999999999999999999999987643
Q ss_pred --------------eEEEEeCCC--CC-CCCcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccc
Q 000680 659 --------------SIAYVSQTS--WI-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEI 713 (1354)
Q Consensus 659 --------------~i~yv~Q~~--~~-~~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~i 713 (1354)
.||||+|+| -+ ...||+||+.++. ..+. ++..++++..++.+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 489999998 34 4579999998752 1222 233344444444210 1123
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEE
Q 000680 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVL 791 (1354)
Q Consensus 714 g~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l 791 (1354)
..+..+|||||||||+||||++.+|++|||||||++||+.+.+.+.+.+..... .|+|+|+||||++.+.. ||+|++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 467789999999999999999999999999999999999999998876555443 38999999999999876 8999999
Q ss_pred eCCeEEEecChHHHH
Q 000680 792 EGGQITQSGNYQELL 806 (1354)
Q Consensus 792 ~~G~i~~~g~~~~l~ 806 (1354)
++|++++.|+++++.
T Consensus 243 ~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 243 YQGEAVETGSVEQIF 257 (623)
T ss_pred eCCeecccCCHHHhh
Confidence 999999999887764
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=503.66 Aligned_cols=190 Identities=21% Similarity=0.282 Sum_probs=154.8
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCc----cCCCcEEEEcC------------eEEEEeCCCCC-CCC
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI----PKISGTVNLYG------------SIAYVSQTSWI-QSG 672 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~----~~~~G~i~~~g------------~i~yv~Q~~~~-~~~ 672 (1354)
+++|+|+|+++++||+++|+|||||||||||++|+|.. +|.+|+|.++| .++|++|++.+ .+.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 46899999999999999999999999999999999986 46899999987 28999998755 567
Q ss_pred cHHHHHhcCCC----------CCHHHHH-----HHHHHhccHHHHhcCCCCCcccccC-CCCCCChHHHHHHHHHHHHhc
Q 000680 673 SIRDNILYGKP----------MDKARYD-----KAIKACALDKDINNFDHGDLTEIGQ-RGLNLSGGQKQRIQLARAVYN 736 (1354)
Q Consensus 673 ti~eni~~g~~----------~~~~~~~-----~~~~~~~l~~~l~~l~~gd~t~ig~-~g~~LSgGQkqRv~lARal~~ 736 (1354)
||+||+.|+.. ..++.+. .+++..+|. +--+|.+|+ ....|||||||||+||||++.
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-------~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLS-------HTRNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcc-------cccCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 99999988521 2222221 223333332 222456654 467899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCc-chhh-hcCEEEEEeCCeEEEecChHHHH
Q 000680 737 DADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQV-EFLS-EVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 737 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~-~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
+|++++|||||++||+.++..+.+.+.+... .|+|+|+++||+ +.+. .+|+|++|++|++++.|+.+++.
T Consensus 227 ~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 227 GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999999876665544 489999999997 4554 48999999999999999998874
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=476.18 Aligned_cols=197 Identities=23% Similarity=0.341 Sum_probs=163.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|++++|+. +++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4889999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCCC-----C-----CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHH
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGKP-----M-----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~~-----~-----~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQ 724 (1354)
++|++|++.++ +.|++||+.++.. . +. ++..+.++.+++.+ ....+..+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-----------DLDEKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCCHHH
Confidence 89999998664 5699999987531 0 11 12222333333321 1235678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 725 kqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
||||+||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++|||++++.. ||++++|++|++++.|+++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999988766555568999999999999876 8999999999998776544
Q ss_pred H
Q 000680 804 E 804 (1354)
Q Consensus 804 ~ 804 (1354)
+
T Consensus 231 ~ 231 (510)
T PRK09700 231 D 231 (510)
T ss_pred h
Confidence 3
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-47 Score=472.67 Aligned_cols=198 Identities=21% Similarity=0.334 Sum_probs=161.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEEcC-------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~--~~G~i~~~g------------- 658 (1354)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 5899999999963 4699999999999999999999999999999999999986 899999876
Q ss_pred -eEEEEeCCCCCC-CCcHHHHHhcCCCC------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 -SIAYVSQTSWIQ-SGSIRDNILYGKPM------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 -~i~yv~Q~~~~~-~~ti~eni~~g~~~------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.++|++|++.++ +.|++||+.++... +.+...+.+ .+-++.+...+ ....+..+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~--~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRA-----QKLLAQLKLDI--NPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHH-----HHHHHHcCCCC--CcccchhhCCHHHHHHHHH
Confidence 289999998664 56999999986421 221111111 11222222211 1235678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|||++.+|+++||||||++||+...+.+.+.+.....+|+|+|++|||++++.. ||++++|++|++++.|+
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 999999999999999999999999999988666554568999999999999876 89999999999987654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=475.44 Aligned_cols=204 Identities=20% Similarity=0.352 Sum_probs=164.4
Q ss_pred cEEEEeeEEEeCCC-CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000680 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g--------- 658 (1354)
-++++|++++|+.. ...++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124799999999999999999999999999999999999986 799998765
Q ss_pred --------eEEEEeCCCC--C-CCCcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCC
Q 000680 659 --------SIAYVSQTSW--I-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1354)
Q Consensus 659 --------~i~yv~Q~~~--~-~~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~ 719 (1354)
++||++|+|. + ...|++||+.++. ..+. ++..++++.+++.+.. .....+..+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 3899999984 3 3469999986421 1221 2344455555553210 012356789
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEE
Q 000680 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1354)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1354)
|||||||||+||||++.+|+++||||||++||+...+++.+.+.+... .|+|+|+||||++.+.. ||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999876655443 38999999999999876 8999999999999
Q ss_pred EecChHHH
Q 000680 798 QSGNYQEL 805 (1354)
Q Consensus 798 ~~g~~~~l 805 (1354)
+.|+++++
T Consensus 237 ~~g~~~~~ 244 (529)
T PRK15134 237 EQNRAATL 244 (529)
T ss_pred EeCCHHHH
Confidence 88876654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=444.34 Aligned_cols=206 Identities=25% Similarity=0.387 Sum_probs=167.9
Q ss_pred cEEEEeeEEEeCCCCC-CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC----CcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI----SGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~-~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~----~G~i~~~g---------- 658 (1354)
-++++|.+..|..... .++++||||+|.+||++||+|.+||||||+.++|+|.+++. +|+|.++|
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5889999988876532 25999999999999999999999999999999999999987 89998877
Q ss_pred -------eEEEEeCCCC---CCCCcHHHHHh----cCCCC-CH---HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCC
Q 000680 659 -------SIAYVSQTSW---IQSGSIRDNIL----YGKPM-DK---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1354)
Q Consensus 659 -------~i~yv~Q~~~---~~~~ti~eni~----~g~~~-~~---~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~L 720 (1354)
.|||++|+|+ -+-.||.+-|. ..... .+ ++..+.++..++.+... . +..+..|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~-------~--~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPER-------R--DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhh-------h--ccCCccc
Confidence 4999999985 23357766654 22222 12 23333444444433222 1 4678899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEE
Q 000680 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1354)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1354)
||||||||.||+|+..+|+++|+||||+|||+.++++|.+.+.... ..|.++|+||||+..+.+ ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999998766544 468899999999999987 89999999999999
Q ss_pred ecChHHHHhc
Q 000680 799 SGNYQELLLA 808 (1354)
Q Consensus 799 ~g~~~~l~~~ 808 (1354)
.|+.++++++
T Consensus 236 ~G~~~~i~~~ 245 (539)
T COG1123 236 TGPTEEILSN 245 (539)
T ss_pred ecCHHHHHhc
Confidence 9999998754
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-47 Score=469.28 Aligned_cols=193 Identities=22% Similarity=0.399 Sum_probs=157.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~--~~G~i~~~g-------------- 658 (1354)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 688999999963 4699999999999999999999999999999999999987 799999876
Q ss_pred eEEEEeCCCCCC-CCcHHHHHhcCCCC-------CHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 SIAYVSQTSWIQ-SGSIRDNILYGKPM-------DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ~i~yv~Q~~~~~-~~ti~eni~~g~~~-------~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.++|++|++.++ +.|++||+.++... +.+ +.+++++.+++.... ...+..+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN----------VTRPVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc----------ccCchhhCCHHHHH
Confidence 389999998664 56999999886421 111 122223333221100 02346789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
||+||||++.+|+++||||||++||+...+.+.+.+.....+|+|+|++|||++++.. ||+|++|++|++++.|
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeec
Confidence 9999999999999999999999999999999988665555568999999999999876 8999999999987543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=464.92 Aligned_cols=206 Identities=18% Similarity=0.319 Sum_probs=161.8
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCC-C
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ-S 671 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~-~ 671 (1354)
|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++|++|++.++ +
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 688999999963 4699999999999999999999999999999999999999999999976 699999997654 5
Q ss_pred CcHHHHHhcCCC-C------------------C-HHHHHHHHH----------HhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 672 GSIRDNILYGKP-M------------------D-KARYDKAIK----------ACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 672 ~ti~eni~~g~~-~------------------~-~~~~~~~~~----------~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
.|++||+.++.. . + ...+.+..+ .....+-++.+...+. .......+||
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~~LS 157 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE-QHYGLMSEVA 157 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh-HhcCchhhcC
Confidence 699999987531 0 0 000000000 0011122333322110 0124567999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeE-EEe
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI-TQS 799 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i-~~~ 799 (1354)
|||||||+||||++.+|+++||||||++||+.+.+++.+.+. ..++|||+||||++++.. ||+|++|++|++ ++.
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~ 234 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN---ERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYP 234 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH---hCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999877543 247899999999999876 899999999999 478
Q ss_pred cChHHHHh
Q 000680 800 GNYQELLL 807 (1354)
Q Consensus 800 g~~~~l~~ 807 (1354)
|+++++++
T Consensus 235 g~~~~~~~ 242 (530)
T PRK15064 235 GNYDEYMT 242 (530)
T ss_pred CCHHHHHH
Confidence 99988764
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-45 Score=420.30 Aligned_cols=401 Identities=21% Similarity=0.305 Sum_probs=307.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHH
Q 000680 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015 (1354)
Q Consensus 936 ~~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~ 1015 (1354)
..+..|++..+++.+|..++.+++.+...++-++...+.+++.+++.++||.+..+|.+.+++.+-...+...+...+..
T Consensus 75 ~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~ 154 (591)
T KOG0057|consen 75 ALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFN 154 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999999999999999999999999888888888877777766
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccchHHHHHHHHhcchHHHHhcccH
Q 000680 1016 VAASGTELLAIIGIMT-FVTWQVLVVAIFAMVAVRFVQRYYIATARE-LIRINGTTKAPVMNYTAETSQGVVTIRAFNMV 1093 (1354)
Q Consensus 1016 ~~~~~~~~i~~i~v~~-~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~-l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e 1093 (1354)
++..++.+......+. -..+.+.++.+..+..|..+ ..+....|. .++....+.....+..-|++.+-.+||+||.|
T Consensus 155 i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~-Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE 233 (591)
T KOG0057|consen 155 IIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAF-TIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNE 233 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhee-EEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccH
Confidence 6666665554443333 23444444444433333221 111122222 22233344455667888999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCccChhHHHHHHHHHHHHHHHHHHHHH
Q 000680 1094 DRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSR 1172 (1354)
Q Consensus 1094 ~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~ 1172 (1354)
++..++|+..+.+.-+...........+.+.-..+.++....+..+ +--+..+.++.|.+.+..+...++..+++.+..
T Consensus 234 ~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~ 313 (591)
T KOG0057|consen 234 EYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGS 313 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHH
Confidence 9999999999988777665544443333332222222211111111 111345788999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCC
Q 000680 1173 WYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRT 1252 (1354)
Q Consensus 1173 ~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrT 1252 (1354)
.+.++-.++.-.+-.+...+.... ..+...|. -+..|.|+|+||+|.|.|+. +||||+||+|++||||||||++
T Consensus 314 vyr~~~q~l~Dm~~~~~l~~~~~~---i~~~~~~i--~~~~~~I~F~dV~f~y~~k~-~iL~gvsf~I~kGekVaIvG~n 387 (591)
T KOG0057|consen 314 VYRELRQALTDMRTLFILLEVDED---IQEAALPI--ELFGGSIEFDDVHFSYGPKR-KVLKGVSFTIPKGEKVAIVGSN 387 (591)
T ss_pred HHHHHHHHHHhHHHHHhhhhhhhh---hhhccCCc--ccCCCcEEEEeeEEEeCCCC-ceecceeEEecCCCEEEEECCC
Confidence 999998888776665543321111 11111122 23457899999999998765 4999999999999999999999
Q ss_pred CccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCC
Q 000680 1253 GSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQL 1331 (1354)
Q Consensus 1253 GSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l 1331 (1354)
||||||++++|+||+| .+|+|+|||+||++++++.+|+.||+||||..||++||-+||...+ ..||||+.++||++++
T Consensus 388 GsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~ 466 (591)
T KOG0057|consen 388 GSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGL 466 (591)
T ss_pred CCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCc
Confidence 9999999999999999 9999999999999999999999999999999999999999997554 4799999999999999
Q ss_pred chHHhcCCCCcCC
Q 000680 1332 KTTISSLPNKLDS 1344 (1354)
Q Consensus 1332 ~~~I~~Lp~gldt 1344 (1354)
||.|+++|+||+|
T Consensus 467 hd~i~~l~~GY~T 479 (591)
T KOG0057|consen 467 HDVISRLPDGYQT 479 (591)
T ss_pred HHHHHhccccchh
Confidence 9999999999999
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=463.82 Aligned_cols=198 Identities=24% Similarity=0.417 Sum_probs=168.3
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5899999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCCCCC---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGKPMD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~~~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
++|++|++.++ +.|++||+.++.... +++..+.++..++... ...+..+|||||||||+||||++
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHHHHHH
Confidence 89999998765 569999999875322 2334445555544322 23567789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
.+|+++||||||++||+...+.+.+.+.....+|+|+|++|||++++.. ||+|++|++|++++.|+++++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999999999999999999999988766555568999999999999876 899999999999988876664
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=466.56 Aligned_cols=193 Identities=20% Similarity=0.334 Sum_probs=160.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
-++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4889999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCCCC-------CHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGKPM-------DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~~~-------~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
++|++|++.++ +.|++||+.++... +.. +..++++.+++ ++. ...+..+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l---------~~~--~~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNL---------RFS--SDKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCC---------CCC--ccCchhhCCHHHHHH
Confidence 89999998654 57999999986421 121 22223333332 221 235678999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++.+.. ||+|++|++|++++.|
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999987665554568899999999999876 8999999999998754
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=464.74 Aligned_cols=197 Identities=23% Similarity=0.326 Sum_probs=166.8
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
-++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3789999999963 3599999999999999999999999999999999999999999998865 27
Q ss_pred EEEeCCCCC---------CCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 661 AYVSQTSWI---------QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 661 ~yv~Q~~~~---------~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|++|++.. +..|++||+.++.. ++++.+++++..++.+..+ .+..+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLD-----------RRFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhhh-----------CCcccCCHHHHHHHHHH
Confidence 999998642 14689999876521 2445666777766654332 56678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
||++.+|+++||||||++||+...+++.+.+.....+|+|+|++||+++.+.. ||+|++|++|+++..|+++++
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999988776555568999999999999876 899999999999988876654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=474.21 Aligned_cols=202 Identities=24% Similarity=0.354 Sum_probs=172.7
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eE
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i 660 (1354)
..|+++|+++.|+++ ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 468999999999632 35799999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCCCCC-CCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 661 AYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 661 ~yv~Q~~~~~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
|||||++.++ ..|++||+.|+.. .. +++.++.++.++|.+.. .++..+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~-----------~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKR-----------NEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 9999998765 5699999987421 12 22344555555554322 3667899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
|++.+|+++|||||||+||+..++.+++.+.+. .+|+|+|++||+++.+.. ||||++|++|+++..|+.+++.+
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l-~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999998866554 468999999999999876 89999999999999999998864
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=467.16 Aligned_cols=195 Identities=26% Similarity=0.391 Sum_probs=160.4
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cCCCcEEEEc---------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLY--------------- 657 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~--~~~~G~i~~~--------------- 657 (1354)
++++|++++|+. +++|+|+||++.+||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 468999999963 46999999999999999999999999999999999997 7999999875
Q ss_pred --------C-----------------------eEEEEeCC-CCC-CCCcHHHHHhcCCC---CC----HHHHHHHHHHhc
Q 000680 658 --------G-----------------------SIAYVSQT-SWI-QSGSIRDNILYGKP---MD----KARYDKAIKACA 697 (1354)
Q Consensus 658 --------g-----------------------~i~yv~Q~-~~~-~~~ti~eni~~g~~---~~----~~~~~~~~~~~~ 697 (1354)
| .++|++|+ +.+ ...|++||+.++.. .+ .++..++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1 28999997 444 45799999987521 22 124445566666
Q ss_pred cHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEc
Q 000680 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVT 776 (1354)
Q Consensus 698 l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvt 776 (1354)
+.+.+ .++..+|||||||||+||||++.+|+++||||||++||+++.+++.+.+.+... .|+|||+||
T Consensus 158 l~~~~-----------~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRI-----------THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 64332 256678999999999999999999999999999999999999999876655433 489999999
Q ss_pred CCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 777 HQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 777 H~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
||++.+.. ||+|++|++|++++.|+++
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~ 254 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPD 254 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHH
Confidence 99999876 8999999999997665433
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=461.08 Aligned_cols=206 Identities=26% Similarity=0.352 Sum_probs=163.2
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCC
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~~ 671 (1354)
-++++|++++|+. ++++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+++ ++||++|+|.+++
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 5899999999962 24699999999999999999999999999999999999999999999864 6999999998764
Q ss_pred -CcHHHHHhcCCC-CC---------------H-H-------HHHHHHHH----------hccHHHHhcCCCCCcccccCC
Q 000680 672 -GSIRDNILYGKP-MD---------------K-A-------RYDKAIKA----------CALDKDINNFDHGDLTEIGQR 716 (1354)
Q Consensus 672 -~ti~eni~~g~~-~~---------------~-~-------~~~~~~~~----------~~l~~~l~~l~~gd~t~ig~~ 716 (1354)
.|++||+.++.. +. . + ++.++.+. ..+...++.+... ....+
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~~ 160 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP---PWDAK 160 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC---cccCc
Confidence 699999987531 00 0 0 00001000 0111222332221 12467
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
..+|||||||||+||||++.+|+++|||||||+||+.+.+++.+.+. .. +.|+|+||||++++.. ||+|++|++|+
T Consensus 161 ~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~-~~--~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLH-DY--PGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHH-hC--CCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 78999999999999999999999999999999999999999876543 32 2599999999999987 79999999999
Q ss_pred EE-EecChHHHHh
Q 000680 796 IT-QSGNYQELLL 807 (1354)
Q Consensus 796 i~-~~g~~~~l~~ 807 (1354)
++ +.|+++++.+
T Consensus 238 i~~~~g~~~~~~~ 250 (556)
T PRK11819 238 GIPWEGNYSSWLE 250 (556)
T ss_pred EEEecCCHHHHHH
Confidence 86 7899888754
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-46 Score=459.36 Aligned_cols=192 Identities=22% Similarity=0.350 Sum_probs=160.3
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 5889999999963 3699999999999999999999999999999999999999999999865 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCCC------CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGKP------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~~------~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
++|++|++.++ +.|++||+.++.. .+. ++..++++.+++.. ....+..+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-----------DPDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-----------CcCCchhhCCHHHHHHH
Confidence 89999998765 4699999998631 122 12333333333321 12356789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEe
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1354)
+||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++++.. ||+|++|++|+++..
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999999999999999999988766554568999999999999876 899999999998753
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=458.11 Aligned_cols=206 Identities=27% Similarity=0.353 Sum_probs=166.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCC-
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ- 670 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~- 670 (1354)
-++++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ .|||++|+|+++
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 4789999999962 24699999999999999999999999999999999999999999999874 699999999875
Q ss_pred CCcHHHHHhcCCCC------------------CH---------HHHHHHHHHhccH-------HHHhcCCCCCcccccCC
Q 000680 671 SGSIRDNILYGKPM------------------DK---------ARYDKAIKACALD-------KDINNFDHGDLTEIGQR 716 (1354)
Q Consensus 671 ~~ti~eni~~g~~~------------------~~---------~~~~~~~~~~~l~-------~~l~~l~~gd~t~ig~~ 716 (1354)
+.|++||+.++... +. .++.++++.++.. +-++.+... ....+
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP---PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC---cccCc
Confidence 56999999875310 01 1223333333321 122222221 12467
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
..+|||||||||+||||++.+|+++||||||++||+++.+++.+.+.. . ++|+|+|||+++++.. ||++++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~-~--~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE-Y--PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 789999999999999999999999999999999999999998775433 2 3599999999999987 79999999999
Q ss_pred EE-EecChHHHHh
Q 000680 796 IT-QSGNYQELLL 807 (1354)
Q Consensus 796 i~-~~g~~~~l~~ 807 (1354)
++ +.|+++++.+
T Consensus 236 i~~~~g~~~~~~~ 248 (552)
T TIGR03719 236 GIPWEGNYSSWLE 248 (552)
T ss_pred EEEecCCHHHHHH
Confidence 76 7899888764
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=456.05 Aligned_cols=190 Identities=26% Similarity=0.344 Sum_probs=157.1
Q ss_pred EeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eEEEE
Q 000680 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SIAYV 663 (1354)
Q Consensus 598 ~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~i~yv 663 (1354)
+|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 2 ~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 2 SNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 578888863 4699999999999999999999999999999999999999999999876 38999
Q ss_pred eCCCCC-CCCcHHHHHhcCCC------CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 664 SQTSWI-QSGSIRDNILYGKP------MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 664 ~Q~~~~-~~~ti~eni~~g~~------~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
+|++.+ ++.|++||+.++.. .+.+ +.+++++.+++. .....+..+|||||||||+|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHHHHHHHH
Confidence 999865 46799999987631 1221 122222222221 1223567899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. ||++++|++|++++.|+
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 217 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQP 217 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999988766555568999999999999876 89999999999987654
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=436.03 Aligned_cols=392 Identities=16% Similarity=0.137 Sum_probs=298.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHH
Q 000680 945 STASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELL 1024 (1354)
Q Consensus 945 ~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i 1024 (1354)
.++..++.+++.++....+.+...++|.++++++++.|++||+++++|++++|+++|++.+...+. .+..++..++.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i 136 (547)
T PRK10522 58 LLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTL 136 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 333345667788888889999999999999999999999999999999999999999999987654 4667777888888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccH---HHHHHHHH
Q 000680 1025 AIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMV---DRFFQNYL 1101 (1354)
Q Consensus 1025 ~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e---~~f~~~~~ 1101 (1354)
+.++++++++|+++++++..+++..++..++.+..++..+...+..+...+++.|.++|+.+|+ ++.+ +.+.+++.
T Consensus 137 ~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~ 215 (547)
T PRK10522 137 GSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYE 215 (547)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHh
Confidence 8889999999999988877777776676667666666666667778899999999999999995 5443 45667777
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIP-RGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANY 1180 (1354)
Q Consensus 1102 ~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~vl~~-~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~ 1180 (1354)
+..+...+.................++. .+..++..+... .+..+.+.++++..+...+..|+..+...+.+++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~ 292 (547)
T PRK10522 216 PDAQEYRHHIIRADTFHLSAVNWSNIMM---LGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSA 292 (547)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666555443332221111111111111 111111111110 112233444444455556778999999999999999
Q ss_pred hhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHH
Q 000680 1181 IISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLI 1260 (1354)
Q Consensus 1181 ~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~ 1260 (1354)
..+.+|+.++.+.|+|++. ++..+. |..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+
T Consensus 293 ~~a~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~ 366 (547)
T PRK10522 293 QVAFNKLNKLALAPYKAEF--PRPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLA 366 (547)
T ss_pred HHHHHHHHHHhcccccccc--cccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHH
Confidence 9999999998765543221 111111 123689999999999743 4699999999999999999999999999999
Q ss_pred HHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCC
Q 000680 1261 SALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPN 1340 (1354)
Q Consensus 1261 ~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1354)
++|.|+|+|++|+|++||+|+++++.+++|+++++|||||++|+||+++| . ...+|++++++++++++.+++. .|+
T Consensus 367 ~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n-~--~~~~~~~~~~~~~~~~l~~~~~-~~~ 442 (547)
T PRK10522 367 MLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE-G--KPANPALVEKWLERLKMAHKLE-LED 442 (547)
T ss_pred HHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc-c--CchHHHHHHHHHHHcCCchhhh-ccc
Confidence 99999999999999999999999999999999999999999999999999 2 3568999999999999998876 466
Q ss_pred CcCCCCcccccc
Q 000680 1341 KLDSSGKLFSAA 1352 (1354)
Q Consensus 1341 gldt~G~n~s~~ 1352 (1354)
|.. .|.|+|-|
T Consensus 443 ~~~-~G~~LSgG 453 (547)
T PRK10522 443 GRI-SNLKLSKG 453 (547)
T ss_pred cCC-CCCCCCHH
Confidence 543 46777754
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=426.99 Aligned_cols=264 Identities=25% Similarity=0.358 Sum_probs=222.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhccccCCCCcEEEEeeEEEeCCC
Q 000680 528 APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPE 607 (1354)
Q Consensus 528 ~~Lt~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~ 607 (1354)
++++|+++|+++++|+.+..|+..+|..... .+|++.|+..+|.+...+.. ..+.++.|+++|++++|..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~~ 93 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMNR 93 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecCC
Confidence 6799999999999999999999988876543 56999998877654321111 12344689999999999753
Q ss_pred CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------------eEEEEeCCC
Q 000680 608 LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------------SIAYVSQTS 667 (1354)
Q Consensus 608 ~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g---------------~i~yv~Q~~ 667 (1354)
..++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++| +++|+||+|
T Consensus 94 -~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 94 -TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred -CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 3569999999999999999999999999999999999996 5799988654 599999999
Q ss_pred CCCCCcHHHHHhcCCCC---C-HH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000680 668 WIQSGSIRDNILYGKPM---D-KA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 668 ~~~~~ti~eni~~g~~~---~-~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1354)
|++++|++|||.|+..+ + ++ .+.++++.|++.++++ +.+++++.+||||||||++||||++++|+
T Consensus 173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqkqRl~LARAl~~~p~ 245 (329)
T PRK14257 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEPE 245 (329)
T ss_pred ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999986432 1 22 3677788888766553 56789999999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
|+||||||+|||+++.+++. +++....+++|+|+|||+++++.. ||+|++|++|+|++.|+++++....
T Consensus 246 IlLLDEPts~LD~~~~~~i~-~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 246 VLLMDEPTSALDPIATAKIE-ELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred EEEEeCCcccCCHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 99999999999999999965 455555667999999999999987 9999999999999999999987543
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=401.85 Aligned_cols=386 Identities=18% Similarity=0.267 Sum_probs=320.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 000680 956 SFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMT-FVT 1034 (1354)
Q Consensus 956 ~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~-~~~ 1034 (1354)
..++...+..+.+.+--+.|.|++.+.+.|.-+..+|-+..-...-..-++..+.+.+...+..++.+....+++. ..+
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 3455667777888888889999999999999888777655444444445555566666666666666655555544 468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHH
Q 000680 1035 WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHT 1114 (1354)
Q Consensus 1035 ~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~ 1114 (1354)
|+++++.+..+++|.++.......--..+|....+.+...+.-.+++-+-.|+|.||.|+.+..+|.+.++.+.++....
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99998888888887776554444444566777778888888999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcC
Q 000680 1115 NGVMEWLILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI 1193 (1354)
Q Consensus 1115 ~~~~~wl~~~l~~l~~~~~~~~~~~-~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~ 1193 (1354)
...-.|+.+.-..+........... ...+..|.++.|.+.....|..+++.|++.+...+.++.++....|+.++.++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 8888888776555544332222222 233467899999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCC-CcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCC
Q 000680 1194 PPEPPAIVEDKRPPSSWP-FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272 (1354)
Q Consensus 1194 ~~E~~~~~~~~~~~~~wp-~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G 1272 (1354)
+.|.. +....|+-|| ..|.|.|+||+|.|.|..| +|+|+||++++|+|+||||++|+||||+..+|+||||+++|
T Consensus 243 ~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r~-iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 243 EAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred chhhc---cCCCCccccccccceEEEEEEEeeccccch-hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 77643 3333456675 4689999999999998875 99999999999999999999999999999999999999999
Q ss_pred EEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCCC
Q 000680 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSS 1345 (1354)
Q Consensus 1273 ~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt~ 1345 (1354)
+|.|||.||+++..+.||+.||+||||.+||++|+..|+...+ ..|+||+++|++.|++++||+++|+||||+
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~ 392 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTG 392 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcc
Confidence 9999999999999999999999999999999999999997544 479999999999999999999999999994
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=447.73 Aligned_cols=206 Identities=22% Similarity=0.328 Sum_probs=156.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCCC
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~~~ 672 (1354)
|.++|++++|+. +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++| .++|++|++.....
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~ 78 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQ 78 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 678999999964 4699999999999999999999999999999999999999999999987 58999997544445
Q ss_pred cHHHHHhcCCC-C--------------CHHHHHHHHH----------HhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 673 SIRDNILYGKP-M--------------DKARYDKAIK----------ACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 673 ti~eni~~g~~-~--------------~~~~~~~~~~----------~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
|+.+++.-+.. + +...|..... ......-++.+...+ .....+..+||||||||
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~~~LSgGerqR 157 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN-EQLERPVSDFSGGWRMR 157 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc-hhhcCchhhcCHHHHHH
Confidence 66666542210 0 0001100000 001112233332210 11235678999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE-EecChHHH
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQEL 805 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l 805 (1354)
|+||||++.+||+|||||||++||+.+..++.+.+.. . +.|+|+||||++++.. ||+|++|++|++. +.|+|+++
T Consensus 158 v~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~-~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 158 LNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS-Y--QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred HHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 9999999999999999999999999999998765433 2 4699999999999986 8999999999996 68888887
Q ss_pred Hh
Q 000680 806 LL 807 (1354)
Q Consensus 806 ~~ 807 (1354)
..
T Consensus 235 ~~ 236 (638)
T PRK10636 235 EV 236 (638)
T ss_pred HH
Confidence 53
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=427.83 Aligned_cols=206 Identities=28% Similarity=0.420 Sum_probs=166.6
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCC-
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ- 670 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~- 670 (1354)
.|.++|++++|+ ++++++|+|+++.+|+++||||+|||||||||++|.|+..|++|+|...+ ++||++|++...
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 478899999995 45799999999999999999999999999999999999999999999987 799999998876
Q ss_pred CCcHHHHHhcCCCCC---HHHHHHHHH------------------H-------hccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 671 SGSIRDNILYGKPMD---KARYDKAIK------------------A-------CALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 671 ~~ti~eni~~g~~~~---~~~~~~~~~------------------~-------~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
..||+|.+..+...- ..+++.... . ......+..+...+. ..+..+|||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~---~~~~~~LSG 156 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE---DRPVSSLSG 156 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc---cCchhhcCH
Confidence 459999998774310 111221111 0 112222333322221 356789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE-Eec
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSG 800 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g 800 (1354)
|||.||+|||||..+||+|||||||++||..+.+++-+.+. ..+| |+|+||||.+||.. |++|+-+++|++. +.|
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~--~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK--RYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH--hCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecC
Confidence 99999999999999999999999999999999999866543 3456 99999999999998 7999999999885 789
Q ss_pred ChHHHHhc
Q 000680 801 NYQELLLA 808 (1354)
Q Consensus 801 ~~~~l~~~ 808 (1354)
+|+.+.+.
T Consensus 234 ny~~~~~~ 241 (530)
T COG0488 234 NYSSYLEQ 241 (530)
T ss_pred CHHHHHHH
Confidence 99988754
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=375.27 Aligned_cols=202 Identities=26% Similarity=0.424 Sum_probs=177.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
-|+++|++.+|+. ..+|+|||++|++||.++|+||+||||||||++|.|+.+|++|+|.++| +
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4789999999984 4699999999999999999999999999999999999999999999998 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCC----CCC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
+|+|+|+..+| ..|+.|||..+. ... +++..+.++..+|.+..+ ..+.+|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~-----------~yP~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKAD-----------AYPAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhh-----------hCccccCcHHHHHHHH
Confidence 78999998875 679999999863 222 234445666667766555 4556899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
||||..+|+++|+|||||||||+....+.+-.......|.|.|+|||++.|.++ ||||+.|++|+|+++|+++++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999887666667789999999999999998 7999999999999999999998664
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-43 Score=442.30 Aligned_cols=204 Identities=24% Similarity=0.371 Sum_probs=157.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe--EEEEeCCCCC-C
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQTSWI-Q 670 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~--i~yv~Q~~~~-~ 670 (1354)
.++++|++++|+. .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|. ++|++|.+.. .
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~ 79 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV 79 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC
Confidence 3789999999963 46999999999999999999999999999999999999999999999874 7999998643 3
Q ss_pred CCcHHHHHhcCCCC-------------------CHH---HHHHH---HH-------HhccHHHHhcCCCCCcccccCCCC
Q 000680 671 SGSIRDNILYGKPM-------------------DKA---RYDKA---IK-------ACALDKDINNFDHGDLTEIGQRGL 718 (1354)
Q Consensus 671 ~~ti~eni~~g~~~-------------------~~~---~~~~~---~~-------~~~l~~~l~~l~~gd~t~ig~~g~ 718 (1354)
.+++.+++..+... ..+ .+..+ ++ ......-++.+... ...+..
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~----~~~~~~ 155 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD----PDAALS 155 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC----CCCchh
Confidence 46787776432100 000 00000 00 00111222222221 135678
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE
Q 000680 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1354)
Q Consensus 719 ~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1354)
+|||||||||+||||++.+|+++||||||++||+.+.+++.+.+.. . +.|+|+||||++++.. ||+|++|++|+++
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~-~--~~tvlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKT-F--QGSIIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHh-C--CCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999998765543 2 3599999999999987 8999999999997
Q ss_pred -EecChHHHHh
Q 000680 798 -QSGNYQELLL 807 (1354)
Q Consensus 798 -~~g~~~~l~~ 807 (1354)
+.|+|+++..
T Consensus 233 ~~~g~~~~~~~ 243 (635)
T PRK11147 233 SYPGNYDQYLL 243 (635)
T ss_pred EecCCHHHHHH
Confidence 5698888764
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=448.61 Aligned_cols=197 Identities=23% Similarity=0.321 Sum_probs=156.4
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEEcC----------eEEEEeCCCCC-CCCcHH
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG----------SIAYVSQTSWI-QSGSIR 675 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~---~G~i~~~g----------~i~yv~Q~~~~-~~~ti~ 675 (1354)
..+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+ .+.||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 46899999999999999999999999999999999999998 99999987 38999999754 567999
Q ss_pred HHHhcCCC-------CC-------HH---------HHHHHHHHhc---------cHHHHhcC--CCCCcccccC-CCCCC
Q 000680 676 DNILYGKP-------MD-------KA---------RYDKAIKACA---------LDKDINNF--DHGDLTEIGQ-RGLNL 720 (1354)
Q Consensus 676 eni~~g~~-------~~-------~~---------~~~~~~~~~~---------l~~~l~~l--~~gd~t~ig~-~g~~L 720 (1354)
||+.|+.. ++ ++ +.+..++++. .+.-++.+ .+-.+|.+|. ....|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 99988521 10 11 1111111111 11223333 3334677765 45789
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcc-hh-hhcCEEEEEeCCeEE
Q 000680 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVE-FL-SEVDRILVLEGGQIT 797 (1354)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~-~l-~~~d~i~~l~~G~i~ 797 (1354)
||||||||+|||+++.+|++++|||||+|||+.+...+.+.+.+... .|+|+|+++|++. .+ ..+|+|++|++|+++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence 99999999999999999999999999999999999999876655433 5899999999973 44 458999999999999
Q ss_pred EecChHHHH
Q 000680 798 QSGNYQELL 806 (1354)
Q Consensus 798 ~~g~~~~l~ 806 (1354)
+.|+.+++.
T Consensus 418 y~G~~~~~~ 426 (1470)
T PLN03140 418 YQGPRDHIL 426 (1470)
T ss_pred EeCCHHHHH
Confidence 999999876
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=424.23 Aligned_cols=205 Identities=23% Similarity=0.322 Sum_probs=148.5
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCC
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~~~~ 672 (1354)
..|.++|++++|+. .++|+|+||+|++|++++|+|+|||||||||++|+|+.. .| +--+|+|+|++|++.-.+.
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~--~g-~p~~g~I~~~~Q~~~g~~~ 249 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI--DG-IPKNCQILHVEQEVVGDDT 249 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CC-CCCCCEEEEEeccCCCCCC
Confidence 45999999999963 359999999999999999999999999999999999741 13 2223578889997543344
Q ss_pred cHHHHHhcCC-----------------------------------CCCH----HHHHHHHHHhcc----------HHHHh
Q 000680 673 SIRDNILYGK-----------------------------------PMDK----ARYDKAIKACAL----------DKDIN 703 (1354)
Q Consensus 673 ti~eni~~g~-----------------------------------~~~~----~~~~~~~~~~~l----------~~~l~ 703 (1354)
|+.|.++-.. ..+. +++.++.+..++ ..-+.
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~ 329 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA 329 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 5543322100 0011 122222222211 11122
Q ss_pred cCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhh
Q 000680 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783 (1354)
Q Consensus 704 ~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~ 783 (1354)
.+...+ .....+..+||||||||++||||++.+|+++||||||++||+...+++.+.+.. . ++|+|+||||++++.
T Consensus 330 ~lgl~~-~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~-~--~~tviivsHd~~~l~ 405 (718)
T PLN03073 330 GLSFTP-EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK-W--PKTFIVVSHAREFLN 405 (718)
T ss_pred HCCCCh-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH-c--CCEEEEEECCHHHHH
Confidence 222110 112345678999999999999999999999999999999999999998775533 2 679999999999998
Q ss_pred h-cCEEEEEeCCeEE-EecChHHHHh
Q 000680 784 E-VDRILVLEGGQIT-QSGNYQELLL 807 (1354)
Q Consensus 784 ~-~d~i~~l~~G~i~-~~g~~~~l~~ 807 (1354)
. ||+|++|++|++. +.|+++++..
T Consensus 406 ~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 406 TVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred HhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 7 8999999999996 7888887643
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=414.62 Aligned_cols=450 Identities=10% Similarity=-0.005 Sum_probs=346.0
Q ss_pred HHHHHHHhccc---hhHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC--CCcc------hHHHHHHHHHHHHHHHHHHHHH
Q 000680 888 PFMDYLNVSKG---MSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP--KITS------GILIGVYAGVSTASAVFVYFRS 956 (1354)
Q Consensus 888 ~y~~y~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~------~~~~~iy~~l~~~~~i~~~~~~ 956 (1354)
.+++|+++.+. +..+++.+++.++...+.+..+++.+..++.- .... ..++.+++++.++..+..++..
T Consensus 81 ~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~ 160 (659)
T TIGR00954 81 FLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLK 160 (659)
T ss_pred HHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544332 22344455555556667777788777665531 1111 1122233344455556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HhH
Q 000680 957 FFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTF-VTW 1035 (1354)
Q Consensus 957 ~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~~i~v~~~-~~~ 1035 (1354)
.+......+..+++|++.+++....++.|||+ ++|++++|+++|++.+...+...+..++..++.+++.+++++. .+|
T Consensus 161 ~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~ 239 (659)
T TIGR00954 161 ELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGS 239 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 77777888899999999999999999999997 8999999999999999999999999999999998888887776 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHH
Q 000680 1036 QVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTN 1115 (1354)
Q Consensus 1036 ~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~ 1115 (1354)
.+.++++...++..++.+++.+..+++.+..+...+...+.++|.++|+.+||+|+.++.+.+++.+..++..+......
T Consensus 240 ~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~ 319 (659)
T TIGR00954 240 VGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLII 319 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888899999999999999999999999999999999999999999999999999999988888887777
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHH-H-HHhc----CCccChhHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHhhH
Q 000680 1116 GVMEWLILRVEALQNLT--LFTAALF-L-VLIP----RGYVAPGLVGL-SLSY---AFTLTGTQVFLSRWYCYLANYIIS 1183 (1354)
Q Consensus 1116 ~~~~wl~~~l~~l~~~~--~~~~~~~-~-vl~~----~g~ls~g~~gl-~l~y---a~~l~~~l~~l~~~~~~le~~~~s 1183 (1354)
....++....+++.... .+...+. . ++.. .|.++.|.... +++| ..++..++..++..+.+++...++
T Consensus 320 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~ 399 (659)
T TIGR00954 320 KFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGF 399 (659)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666664321 1111111 1 2222 26788886433 5555 566789999999999999999999
Q ss_pred HHHHHHhhcCCCCCCC------CCCCCC--------C------CCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCC
Q 000680 1184 VERIKQFMHIPPEPPA------IVEDKR--------P------PSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEG 1243 (1354)
Q Consensus 1184 veRI~e~~~~~~E~~~------~~~~~~--------~------~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~G 1243 (1354)
.+|+.++++.++|... ..++.. + .......|.|+++||+++|+++ +++|+|+||+|++|
T Consensus 400 ~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~G 478 (659)
T TIGR00954 400 TARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSG 478 (659)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCC
Confidence 9999999975433110 000000 0 0000134679999999999644 35999999999999
Q ss_pred cEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCC--------C
Q 000680 1244 TRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--------G 1315 (1354)
Q Consensus 1244 ekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~--------~ 1315 (1354)
|++||||++|||||||+++|.|+++|++|+|.+|+ |+++++|||+|.+|++|+|+||... .
T Consensus 479 e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 547 (659)
T TIGR00954 479 NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRR 547 (659)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhcc
Confidence 99999999999999999999999999999999875 7899999999999999999999521 2
Q ss_pred CCCHHHHHHHHHHcCCchHHhcCCCCcCCC---Cccccc
Q 000680 1316 LYSDDEIWKALEKCQLKTTISSLPNKLDSS---GKLFSA 1351 (1354)
Q Consensus 1316 ~~sDeeI~~AL~~a~l~~~I~~Lp~gldt~---G~n~s~ 1351 (1354)
..++++++++++.+++++++.. |.|+|+. |.++|-
T Consensus 548 ~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSg 585 (659)
T TIGR00954 548 GLSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSG 585 (659)
T ss_pred CCCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCH
Confidence 3578999999999999999987 9999985 345554
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=373.47 Aligned_cols=204 Identities=26% Similarity=0.386 Sum_probs=176.4
Q ss_pred EEEEeeEEEeCCC--CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~--~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
|+++++++.|... ...++|+|+||+|++||+.+|+|.+|+|||||+++|.++.+|++|+|.++|
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999863 235689999999999999999999999999999999999999999999998
Q ss_pred --eEEEEeCCCCCCC-CcHHHHHhcCCCC---C-H---HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 659 --SIAYVSQTSWIQS-GSIRDNILYGKPM---D-K---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 659 --~i~yv~Q~~~~~~-~ti~eni~~g~~~---~-~---~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
+||+++|++.+.+ .||.|||.|+.+. + + +|..+.++..+|.+.. +..+.+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~-----------~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKA-----------DRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------ccCchhcCcchhhHH
Confidence 4999999998876 7999999997542 2 2 2344444445555332 366789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHH
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
+|||||+.+|+|+|.|||||||||++.+.|.+.+.+.. .-|-|+++|||.++.++. |||+.||++|+++|+|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999988665543 348899999999999988 8999999999999999999998
Q ss_pred hcC
Q 000680 807 LAG 809 (1354)
Q Consensus 807 ~~~ 809 (1354)
.++
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 765
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=370.13 Aligned_cols=207 Identities=23% Similarity=0.423 Sum_probs=164.4
Q ss_pred CcEEEEeeEEEeCCC-CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC--------
Q 000680 593 RSVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g-------- 658 (1354)
.-+.++|.+.++... ....++++|||+|.+||.+|+||.+|||||-..++|+|+++. -+|+|.++|
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 356788877766532 345789999999999999999999999999999999999975 478998877
Q ss_pred ---------eEEEEeCCCCC-CC--CcHHHHH----hcCCCCC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCC
Q 000680 659 ---------SIAYVSQTSWI-QS--GSIRDNI----LYGKPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1354)
Q Consensus 659 ---------~i~yv~Q~~~~-~~--~ti~eni----~~g~~~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~ 718 (1354)
+|+.++|+|.- .| .||..-| ....... +++..+.++..++.+-- ..+...+.
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~--------~rl~~yPH 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPE--------KRLDAYPH 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchh--------hhhhhCCc
Confidence 59999999953 22 3665444 3333332 34445555555554321 23456788
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeE
Q 000680 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 719 ~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1354)
+|||||||||.||.||..+||++|-||||.|||..+..+|.+.+.... ..|-.++++|||+..+++ ||||+||.+|++
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEE
Confidence 999999999999999999999999999999999999999987655443 347899999999999987 899999999999
Q ss_pred EEecChHHHHh
Q 000680 797 TQSGNYQELLL 807 (1354)
Q Consensus 797 ~~~g~~~~l~~ 807 (1354)
+|.|+.+++..
T Consensus 237 vE~~~t~~lF~ 247 (534)
T COG4172 237 VETGTTETLFA 247 (534)
T ss_pred eecCcHHHHhh
Confidence 99998777753
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=361.29 Aligned_cols=203 Identities=30% Similarity=0.407 Sum_probs=175.7
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
|+++|+++.|.+ +.+++|+||+|++||+++++||+||||||+|++|.++++|++|+|.++| +||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 789999999983 5699999999999999999999999999999999999999999999998 599
Q ss_pred EEeCCCCC-CCCcHHHHHhcCC---CCCHH----HHHHHHHHhccHH-HHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 662 YVSQTSWI-QSGSIRDNILYGK---PMDKA----RYDKAIKACALDK-DINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 662 yv~Q~~~~-~~~ti~eni~~g~---~~~~~----~~~~~~~~~~l~~-~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
||-|+.-+ ++.||.|||..-. .++++ +.++.++..+|++ +.. .+.+.+|||||+|||.+||
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~----------~RyP~eLSGGQQQRVGv~R 148 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYA----------DRYPHELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHh----------hcCchhcCcchhhHHHHHH
Confidence 99999765 5789999998742 24544 4555666666654 222 2567899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchh-hhcCEEEEEeCCeEEEecChHHHHhcCc
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1354)
||+.+|+|+|+||||+||||-+++.+-+++..... -++|+|+||||+++. +.+|||.+|++|+|++.+++++++.++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 99999999999999999999999998877665443 489999999999885 5599999999999999999999998754
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=382.74 Aligned_cols=222 Identities=27% Similarity=0.363 Sum_probs=201.7
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.|+++|++++|+++ ..++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++| ++
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 58999999999743 3469999999999999999999999999999999999998 799999987 48
Q ss_pred EEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 661 ~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
+|+||+|+++++|++||+....+++.++..++++.+++...+..+|.+.+|.+++.|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999964334667788899999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchHHHHHHH
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 818 (1354)
+||||||++||+++.+.+.+.+.. ..+++|+|+|||+++.+..||+|++|++|++++.|++++++++++.|.+++..
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~-~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQ-AFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHH-hcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 999999999999999987765543 34689999999999998889999999999999999999999877777777654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=364.82 Aligned_cols=190 Identities=33% Similarity=0.453 Sum_probs=165.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEeC
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------~i~yv~Q 665 (1354)
.+.+++++.+|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++| .+|||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 5789999999985 5799999999999999999999999999999999999999999999987 5899999
Q ss_pred CCCC-CCCcHHHHHhcCCCCC-------HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 000680 666 TSWI-QSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1354)
Q Consensus 666 ~~~~-~~~ti~eni~~g~~~~-------~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1354)
++-+ +-.||+|||.+|.+.. +++..+.++..+|...-+ ..+.+|||||||||+||||++.+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~-----------~~P~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFED-----------KYPHQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhh-----------cCccccChHHHHHHHHHHHHhcC
Confidence 9865 4689999999986532 235666677777765444 45678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhh-hcCEEEEEeC--CeEE
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEG--GQIT 797 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~--G~i~ 797 (1354)
|+++||||||+|||+.|+.++.+.+.+.+. .++|+++||||+++.- -+|||++|.+ |+|.
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999888877654 5789999999998865 4899999998 5553
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=367.34 Aligned_cols=201 Identities=32% Similarity=0.531 Sum_probs=175.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEE
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAY 662 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----------~i~y 662 (1354)
..|+++|++++|+.+ ++|+||||+|++|++++|+||||||||||+|+|+|+++|.+|+|.+.| +|||
T Consensus 3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 358999999999853 599999999999999999999999999999999999999999999876 4999
Q ss_pred EeCCC---CCCCCcHHHHHhcCCCC-----------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 663 VSQTS---WIQSGSIRDNILYGKPM-----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 663 v~Q~~---~~~~~ti~eni~~g~~~-----------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
|||.. |-++.||+|-+..|... |.+..+++++..++.+..+ ++..+|||||+|||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-----------r~i~~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-----------RQIGELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-----------CcccccCcHHHHHH
Confidence 99964 67889999999987432 3467778888888774322 55678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
-|||||+++||+++|||||+|+|+.+++.+++.+.....+|+||++||||++.+.. +|+|+.|+ +++...|++++...
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 99999999999999999999999999999998766666679999999999998765 89999995 56889999999875
Q ss_pred c
Q 000680 808 A 808 (1354)
Q Consensus 808 ~ 808 (1354)
.
T Consensus 228 ~ 228 (254)
T COG1121 228 E 228 (254)
T ss_pred H
Confidence 4
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=368.86 Aligned_cols=201 Identities=26% Similarity=0.414 Sum_probs=177.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++|+|+. +++++|+||++++||+++|+|||||||||||++|+|.++|.+|+|.++| .+
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3689999999983 5799999999999999999999999999999999999999999999998 59
Q ss_pred EEEeCCCCC-CCCcHHHHHhcCCC-----------CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 661 AYVSQTSWI-QSGSIRDNILYGKP-----------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 661 ~yv~Q~~~~-~~~ti~eni~~g~~-----------~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
||+||++.. ++.||+|-+.+|+. .|++...++++.+++.+..+ +...+|||||||||
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~-----------r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD-----------RPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc-----------CcccccChhHHHHH
Confidence 999999754 57799999999852 13345666688887766443 45678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhh-hcCEEEEEeCCeEEEecChHHHH
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
.|||||+++|+++|||||||+||....-++++.+.+.. .+|+|+|+|+||++... .||++++|++|+++.+|+++|++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999998877665 56899999999999865 59999999999999999999987
Q ss_pred hc
Q 000680 807 LA 808 (1354)
Q Consensus 807 ~~ 808 (1354)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 54
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=346.97 Aligned_cols=206 Identities=27% Similarity=0.408 Sum_probs=179.5
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCC-----cEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS-----GTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~-----G~i~~~g--------- 658 (1354)
..++++|.++.|+. ..+|+|||++|++++++|++||+||||||||+++.++.+..+ |+|.++|
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 56899999999984 469999999999999999999999999999999999887765 8998887
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCCC---C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~~---~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
+||.|+|.|..|++||+|||.+|... . ++..++.++.++|.+..+. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 49999999999999999999998532 1 2456677777888765542 23467889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||+|||||+.-+|+|+|||||||||||.+..+| ++++..+.++-|+|+|||+++...+ +|+...+.+|+++|.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 999999999999999999999999999999997 4566666678899999999999887 69999999999999999999
Q ss_pred HHhcC
Q 000680 805 LLLAG 809 (1354)
Q Consensus 805 l~~~~ 809 (1354)
+..++
T Consensus 235 iF~~P 239 (253)
T COG1117 235 IFTNP 239 (253)
T ss_pred hhcCc
Confidence 87654
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=378.73 Aligned_cols=203 Identities=32% Similarity=0.427 Sum_probs=179.9
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~y 662 (1354)
.|+++|++++|++. .+++|+|++|++||+++++|||||||||||++|+|+.+|++|+|.++| .||+
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999753 289999999999999999999999999999999999999999999988 4999
Q ss_pred EeCCCCC-CCCcHHHHHhcCCCCC-------HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWI-QSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~-~~~ti~eni~~g~~~~-------~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
|+|+.-+ +++||+|||.||.... +++.+++.+..++++.++ .++.+||||||||||||||+
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~-----------r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN-----------RKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHh-----------cCcccCChhhHHHHHHHHHH
Confidence 9999876 5779999999986542 457777888888888776 45678999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhh-hcCEEEEEeCCeEEEecChHHHHhcCc
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1354)
.++|+++|||||+|+||++.+..+..++.+... -+.|+|.||||..+.. .+|||+||++|+|.+.|++.|+.++..
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 999999999999999999999998887766433 3789999999987765 589999999999999999999987643
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=361.80 Aligned_cols=203 Identities=32% Similarity=0.440 Sum_probs=176.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.|.++|.+..|+. .++++|||++|+.||++++.|||||||||||++|+|+..|++|+|.++| +
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 4678888888874 4689999999999999999999999999999999999999999999987 4
Q ss_pred EEEEeCCCCC-CCCcHHHHHhcCCCC---------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 660 IAYVSQTSWI-QSGSIRDNILYGKPM---------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 660 i~yv~Q~~~~-~~~ti~eni~~g~~~---------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
||||+|+.-+ +.+||.|||.||.+. .+.+..+.++.|.|+.--+ .++.+||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-----------ryP~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-----------RYPAQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-----------cCchhcChHHHHHHH
Confidence 9999999865 578999999999732 2345666677777754333 567799999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||||+..+|++|||||||+|||++..+.+...+.+...+ |.|+++||||.++... ||||++|++|+|.+.|+++|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999999987766655444 8899999999998655 89999999999999999999986
Q ss_pred cCc
Q 000680 808 AGT 810 (1354)
Q Consensus 808 ~~~ 810 (1354)
.+.
T Consensus 228 ~P~ 230 (345)
T COG1118 228 HPA 230 (345)
T ss_pred CCC
Confidence 543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=379.53 Aligned_cols=204 Identities=30% Similarity=0.433 Sum_probs=179.5
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEE
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~ 661 (1354)
..++++|++.+|+ +..+++|+||+|++||+++++|||||||||||++|+|+..|++|+|.++| .|+
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4699999999998 35799999999999999999999999999999999999999999999998 499
Q ss_pred EEeCCCCC-CCCcHHHHHhcCCCC----C-H---HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 662 YVSQTSWI-QSGSIRDNILYGKPM----D-K---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 662 yv~Q~~~~-~~~ti~eni~~g~~~----~-~---~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
+|+|+.-+ +++||+|||.||... . + +++.++++..+|....+ +++.+|||||||||+|||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~-----------R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD-----------RKPHQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh-----------hChhhhChHHHHHHHHHH
Confidence 99999776 578999999999762 2 2 36667777777765333 677899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcch-hhhcCEEEEEeCCeEEEecChHHHHhcCc
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1354)
||..+|+++|||||+||||.+.++++..++..... .|.|.|+||||.++ +..+|||+||++|+|.+.|+++|+...+.
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~ 229 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPA 229 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcc
Confidence 99999999999999999999999999887776543 48999999999977 55689999999999999999999987653
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=346.18 Aligned_cols=205 Identities=27% Similarity=0.422 Sum_probs=176.9
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
+..|+++++++++.. +.+++|+||+|++||+++|+||+||||||||++|.|+++|++|+|.+.|
T Consensus 6 ~~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 467999999999974 5799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEeCCCCCCC-CcHHHHHhcCC----CCCHHHHH----HHHHHhccHHH-HhcCCCCCcccccCCCCCCChHHH
Q 000680 659 ---SIAYVSQTSWIQS-GSIRDNILYGK----PMDKARYD----KAIKACALDKD-INNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 ---~i~yv~Q~~~~~~-~ti~eni~~g~----~~~~~~~~----~~~~~~~l~~~-l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
++|+++|+.-+|. .||+||+.|.. ..+++.++ ..+++++|..+ .+.+ +.+||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----------PsELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY-----------PSELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----------chhhcchHH
Confidence 4999999988874 69999999953 23444333 45677888776 5544 468999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc--CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
+|++||||+..||+++++|||||||||.+...+ ++++.... -|-|+|+||||++.+.. ||+++++.||+|+..|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 999999999999999999999999999998875 55555433 37899999999998876 799999999999999999
Q ss_pred HHHHhcCch
Q 000680 803 QELLLAGTA 811 (1354)
Q Consensus 803 ~~l~~~~~~ 811 (1354)
+|+.+.+..
T Consensus 231 ~el~~sd~P 239 (263)
T COG1127 231 EELLASDDP 239 (263)
T ss_pred HHHHhCCCH
Confidence 999886543
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=402.54 Aligned_cols=179 Identities=23% Similarity=0.331 Sum_probs=147.7
Q ss_pred eeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE-----------EcC---------
Q 000680 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-----------LYG--------- 658 (1354)
Q Consensus 599 ~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~-----------~~g--------- 658 (1354)
+.++.|+.+ ..+|++++ .+++||+++|+||||||||||+++|+|+++|++|+|. ++|
T Consensus 78 ~~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 478888742 36899999 9999999999999999999999999999999999996 544
Q ss_pred ------eEEEEeC----CCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 659 ------SIAYVSQ----TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 659 ------~i~yv~Q----~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
+++|.+| .|.++.+|++||+.... ..++.+++++..++.... ..+..+||||||||+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~qrv 221 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENIL-----------DRDISELSGGELQRV 221 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHH
Confidence 2455554 56667789999997521 234566677766665433 256678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCC
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1354)
+||||++++|++|+||||||+||++..+++++.+..... |+|+|+|||+++.+.. +|+|++|++|
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999876655545 8999999999999876 8999999753
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=364.53 Aligned_cols=219 Identities=41% Similarity=0.710 Sum_probs=196.3
Q ss_pred cCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCC
Q 000680 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668 (1354)
Q Consensus 589 ~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~ 668 (1354)
+.....++++|+++.+ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++|++|+++
T Consensus 34 ~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~ 108 (282)
T cd03291 34 SSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSW 108 (282)
T ss_pred CCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCccc
Confidence 3456679999999962 35999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000680 669 IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1354)
Q Consensus 669 ~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1354)
+++.|++||+.++......++.+.++++++.+.++.++.+..+.+++++.+||||||||++||||++++|+++||||||+
T Consensus 109 l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~ 188 (282)
T cd03291 109 IMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188 (282)
T ss_pred ccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 98899999999876555556677788888988899999988888889999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchH
Q 000680 749 AVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1354)
Q Consensus 749 ~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 812 (1354)
+||+.+.+.+.+.++....+++|+|++||+++.+..||++++|++|++++.|+.+++.+....+
T Consensus 189 gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 252 (282)
T cd03291 189 YLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDF 252 (282)
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHH
Confidence 9999999988876654445678999999999999889999999999999999999987654333
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=348.29 Aligned_cols=193 Identities=28% Similarity=0.407 Sum_probs=163.0
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
++++|++..|.... ..++|+++||+|++||+++|+||+||||||||++|.|+.+|++|.|.++|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 56889999887542 24789999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeCCCC-CCCCcHHHHHhcCC----CCC---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 659 --SIAYVSQTSW-IQSGSIRDNILYGK----PMD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 659 --~i~yv~Q~~~-~~~~ti~eni~~g~----~~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
+||||+|+.. +++.|++|||.++. ... +++.++.++..+|.+... ..++.+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 3999999976 57889999999532 111 334445555555554333 245779999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEE
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1354)
|+|||++.+|+++|.||||.+||.++++.+++.+..... .|+|+|+||||......|||++.|+||++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999987766544 489999999999999999999999999954
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=359.27 Aligned_cols=219 Identities=31% Similarity=0.469 Sum_probs=192.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|+++.|+.. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4689999999643 35699999999999999999999999999999999999999999999987 389
Q ss_pred EEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 662 yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
|++|++++++.|++||+.++.. ...++..+.++..++.+.++.+|.|..+..++++.+|||||||||+||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999988999999998653 334455566666778888888888877778889999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCchHHHH
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 815 (1354)
+||||||++||+...+.+.+.+... .+|+|+|++||+++.+..||++++|++|++++.|+++++.++.+.+..+
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHH
Confidence 9999999999999999988766544 4589999999999999889999999999999999999988765555443
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=352.49 Aligned_cols=201 Identities=56% Similarity=0.983 Sum_probs=183.3
Q ss_pred EEEEeeEEEeCCCCC--CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCC
Q 000680 595 VKIQEGNFSWDPELA--IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~--~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~~~~ 672 (1354)
++++|+++.|++... .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+|+|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 468999999975321 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCH
Q 000680 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1354)
Q Consensus 673 ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~ 752 (1354)
|++||+.++..++.++..++.+.+++.+.+..+|.|..|.+++++.+||||||||++||||++++|++++|||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999999876666677788888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhhcCEEEEEeCCe
Q 000680 753 HTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1354)
Q Consensus 753 ~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1354)
+..+.+++.++... .+++|+|++||+++.+..+|++++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999887665433 45789999999999988899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=341.33 Aligned_cols=200 Identities=30% Similarity=0.445 Sum_probs=172.7
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
.|+++|++..|+. .+.+|+||||+|++||+++|+|++||||||||++|.|+.+|++|+|.++|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999974 46799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEeCCCCC-CCCcHHHHHhcCCC------------CCHHHHH---HHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 659 -SIAYVSQTSWI-QSGSIRDNILYGKP------------MDKARYD---KAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 659 -~i~yv~Q~~~~-~~~ti~eni~~g~~------------~~~~~~~---~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
++||++|++.+ +..||.+|++.|.- +.++... ++++..++.+... .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 49999999876 67799999987741 2333333 3344444443322 5778999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEe
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1354)
|||+|||+|||||+++|+++|-|||+++|||.+++++++.+.+.. ..|.|+|+.-|++++..+ ||||+-|++|+|+++
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999998877654 468999999999999875 999999999999999
Q ss_pred cChHHHH
Q 000680 800 GNYQELL 806 (1354)
Q Consensus 800 g~~~~l~ 806 (1354)
|+.+|+.
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9999964
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=349.17 Aligned_cols=399 Identities=17% Similarity=0.207 Sum_probs=293.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHH-HHHHHHHH
Q 000680 943 GVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSI-VFVAASGT 1021 (1354)
Q Consensus 943 ~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l-~~~~~~~~ 1021 (1354)
.+.+..+++.++|+.++.+.+.+.-+.+..+.+...+++|..--...+....+ +|.+++..++...- .-++..-
T Consensus 71 ~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaP- 145 (580)
T COG4618 71 GLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAP- 145 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCc-
Confidence 44556778888999999999999999999999999988877644333333443 48888887775432 2222221
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHH
Q 000680 1022 ELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101 (1354)
Q Consensus 1022 ~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~ 1101 (1354)
..-..+++++.+.|++.++++.-.++.+.+...--...|+--+..++..+.-..+..-+..+..+|+|.|+.+...+++.
T Consensus 146 W~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~ 225 (580)
T COG4618 146 WMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWG 225 (580)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHH
Confidence 22234456666777776666544443333333323333333344444555567788889999999999999877777766
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 1102 KLVDIDASLFFHTNGVMEWLILRVEALQN-LTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANY 1180 (1354)
Q Consensus 1102 ~~~d~~~~~~~~~~~~~~wl~~~l~~l~~-~~~~~~~~~~vl~~~g~ls~g~~gl~l~ya~~l~~~l~~l~~~~~~le~~ 1180 (1354)
+....+....-...-.+.-++...-.+-. +-..+.++.++++.+|++|+|.+...-..+.....|+...+..|.++-.+
T Consensus 226 ~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~A 305 (580)
T COG4618 226 RFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAA 305 (580)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHH
Confidence 55544332221111111111111000000 11223344566778999999998887777778888999999999999999
Q ss_pred hhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHH
Q 000680 1181 IISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLI 1260 (1354)
Q Consensus 1181 ~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~ 1260 (1354)
..|..|+.+.++..++.... -..|. .+|.+..|++++.=++...|+|+||||+++|||-+|||||||||||||.
T Consensus 306 r~s~~Rl~~lL~~~p~~~~~---m~LP~---P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLa 379 (580)
T COG4618 306 RQSYKRLNELLAELPAAAER---MPLPA---PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLA 379 (580)
T ss_pred HHHHHHHHHHHHhCccccCC---CCCCC---CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHH
Confidence 99999999999765554321 11121 3699999999996555556899999999999999999999999999999
Q ss_pred HHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCC
Q 000680 1261 SALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLP 1339 (1354)
Q Consensus 1261 ~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp 1339 (1354)
++|.|.+.|.+|+|.+||-|+++.+.++|=++|||.|||-.||+|||++||.-|+ +.++|.|.+|++.|+.||.|.+||
T Consensus 380 R~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP 459 (580)
T COG4618 380 RLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLP 459 (580)
T ss_pred HHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999998777 678888999999999999999999
Q ss_pred CCcCC----CCcccccc
Q 000680 1340 NKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1340 ~gldt----~G~n~s~~ 1352 (1354)
+|||| +|..+|.|
T Consensus 460 ~GYdT~iG~~G~~LSgG 476 (580)
T COG4618 460 QGYDTRIGEGGATLSGG 476 (580)
T ss_pred CCccCccCCCCCCCCch
Confidence 99999 57788765
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=323.37 Aligned_cols=199 Identities=29% Similarity=0.437 Sum_probs=174.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
+.++++.|+|...+ =..+++|+.||+++|+||+||||||||+.|+|+..|.+|+|.++| .++.+
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 46778999997432 257899999999999999999999999999999999999999988 39999
Q ss_pred eCCCCCCC-CcHHHHHhcCCC-------CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 664 SQTSWIQS-GSIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 664 ~Q~~~~~~-~ti~eni~~g~~-------~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
+|+..+|. .||.+||.+|.. .++++.+.+..+.+|...++++|. +|||||||||+|||++.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHh
Confidence 99998875 599999999853 245677888888899988887774 79999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
++.+|+|||||||||||.-+..+...+.... .++.|+++|||+++.+.. +|+++++++|+|.++|+.+++....
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 9999999999999999999998776554433 467899999999999876 8999999999999999999987643
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=351.51 Aligned_cols=202 Identities=28% Similarity=0.482 Sum_probs=180.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|.+|+|+++ .++|+|+|++|++||.++|+|+||||||||++++.|+++|++|.|.++| +
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999865 5799999999999999999999999999999999999999999998876 3
Q ss_pred EEEEeCCC--CCCCCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 660 IAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 660 i~yv~Q~~--~~~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
||||+|+| .++..||.|.+.||.. .+ +++.+++++.|++.+..+ +.+.+|||||||||+|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-----------r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-----------RPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-----------CCccccCCcceeeHHh
Confidence 99999999 5788999999999853 33 345677888888877644 4567999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|.+|..+|++++||||||+||+...+.+.+.+.+...+ |+|+|++|||++.+.. ||++++|++|+++.+|+++++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999998877666555 6899999999999887 999999999999999999988754
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=354.76 Aligned_cols=215 Identities=32% Similarity=0.503 Sum_probs=189.8
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|+++.|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999753335799999999999999999999999999999999999999999999877 399
Q ss_pred EEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 662 yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
|++|++.+++.|++||+.++.. ...++..+.++.+++.+.++.+|.|..+..+.+..+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998888899999998753 234455667777788888888888888888888999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCc
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1354)
+||||||++||++..+.+.+.+.... +|+|+|++||+++.+..||++++|++|++++.|+.+++.....
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 229 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKG 229 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcCh
Confidence 99999999999999999887665544 7899999999999988899999999999999999888865443
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=336.32 Aligned_cols=205 Identities=25% Similarity=0.401 Sum_probs=176.3
Q ss_pred cEEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
.++++|.++.|+... ..++++||||+|.+||+++|+|++|||||||.++|+|+.+|++|+|.++|
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 578999999998542 12599999999999999999999999999999999999999999999988
Q ss_pred eEEEEeCCCC---CCCCcHHHHHhcCCC-----CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 SIAYVSQTSW---IQSGSIRDNILYGKP-----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ~i~yv~Q~~~---~~~~ti~eni~~g~~-----~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.|-+|+|+|. -+..||++-|.-+.. ..+++..++++..+|.+... .+++.+|||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l----------~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFL----------DRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHH----------hcCchhcChhHHHHHHH
Confidence 3899999985 256799888764322 23456777888888876543 25677899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||||..+|+++|||||||+||+.+...|.+.+.+.. ..+-|.|+||||+..+.+ ||||+||++|+++|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999998766543 356799999999999987 899999999999999999998865
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=351.50 Aligned_cols=212 Identities=30% Similarity=0.501 Sum_probs=190.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++++|+.. +++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 57899999999632 3699999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000680 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 661 ~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1354)
+|++|++++++.|++||+.++.+ ...++..+.++.+++.+.++.+|.|..+..+.++.+|||||||||+||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999888899999998754 34456677788889988899999888888888999999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
++||||||++||+.+.+.+.+.+... .+++|+|++||+++.++.||++++|++|++++.|+.+++...
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999988766544 468999999999999888999999999999999998887643
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=354.68 Aligned_cols=216 Identities=27% Similarity=0.388 Sum_probs=193.9
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
.+.++++|++++|+.. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 4579999999999753 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000680 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 659 ~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1354)
.++|++|+|++++.|++||+........+++.++++..++.+.++.+|.|.++.+++++.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999765444556677788888899999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcC
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
++++|||||++||+++.+.+++.+.. ..+++|+|++||+++.+..||+|++|++|++++.|+++++.+..
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~-~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 245 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMT-AFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQE 245 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHH-hcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhcc
Confidence 99999999999999999887765543 44689999999999999889999999999999999999987653
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=351.33 Aligned_cols=213 Identities=32% Similarity=0.544 Sum_probs=189.4
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999643 23689999999999999999999999999999999999999999999876 389
Q ss_pred EEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 662 yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
|++|++++++.|++||+.++.. ...+.+.+..+.+.+.+.++.++.|..+..+.++.+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988999999998753 345566677777888888999988887888889999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcC
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
+||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+..||++++|++|++++.|+.+++....
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERL-MKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC
Confidence 9999999999999999987765444 4689999999999999889999999999999999999886554
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=369.75 Aligned_cols=203 Identities=25% Similarity=0.351 Sum_probs=172.5
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996422 34699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 -~i~yv~Q~~~~~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
+|||++|++.++ +.|++||+.++.. .++ ++..+.++..+|.+.. ..++.+|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~-----------~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKH-----------DSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 389999999876 5799999998632 222 2334445555554322 3567799999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||||++.+|+++|||||||+||+.+.+.+.+.+.+...+ |.|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 999999999999999999999999999998766654443 8999999999999876 89999999999999999999976
Q ss_pred c
Q 000680 808 A 808 (1354)
Q Consensus 808 ~ 808 (1354)
.
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 4
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=350.50 Aligned_cols=214 Identities=33% Similarity=0.549 Sum_probs=190.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|+++.|+.+ .++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999632 4689999999999999999999999999999999999999999999977 289
Q ss_pred EEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 662 yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
|++|++++++.|++||+.++.. ...+...+.++.+++.+.++.++.|..+.++.++.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998753 334455667778888888899999988888889999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhcCch
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 811 (1354)
+||||||++||+++.+.+.+.+..... |+|+|++||+++.+..||++++|++|++++.|+.+++.+....
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~ 228 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGL 228 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccH
Confidence 999999999999999998876654444 8999999999999988999999999999999999888765433
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=371.15 Aligned_cols=203 Identities=31% Similarity=0.447 Sum_probs=175.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~y 662 (1354)
.++++|+++.|+. +.++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .|||
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 3789999999942 24699999999999999999999999999999999999999999999987 3999
Q ss_pred EeCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
|+|++.++ +.||+|||.|+.. .++ ++.+++++..+|.+..+ .++.+|||||||||+||||+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLD-----------RKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 99999886 5799999998743 222 34456666666654433 55678999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
+.+|+++|||||||+||+...+.+.+.+..... .|.|+|+||||++.+.. ||+|++|++|++++.|+++++.++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 999999999999999999999999887765444 38999999999998765 8999999999999999999997654
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=322.01 Aligned_cols=193 Identities=24% Similarity=0.404 Sum_probs=173.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
|+|+|++..|+.. +++|+|+||+|++||++-|+||+||||||||++|.++.+|++|+|.++|
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999865 5799999999999999999999999999999999999999999999987
Q ss_pred eEEEEeCCCC-CCCCcHHHHHhcCCCC---C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 SIAYVSQTSW-IQSGSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ~i~yv~Q~~~-~~~~ti~eni~~g~~~---~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
+||+|+|+.- +++.||.||+.|.... . +++..++++..+|.+....+|. +|||||||||+|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 5999999976 5788999999996432 2 4566778888899888887764 799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhc-CEEEEEeCCeEEEec
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSG 800 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~-d~i~~l~~G~i~~~g 800 (1354)
|||+..+|+++|-||||.+|||..+..|++.+.+....|.||+++|||.+.+... -+++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999999999999987666677899999999999999886 789999999998653
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=354.33 Aligned_cols=192 Identities=27% Similarity=0.421 Sum_probs=170.0
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~------------- 659 (1354)
..+++++.+..|+ ...+++||||+|++||+.|++|.||+|||||+++|.|.++|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 4689999999998 357999999999999999999999999999999999999999999999983
Q ss_pred -EEEEeCCCCC-CCCcHHHHHhcCCCC------C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 660 -IAYVSQTSWI-QSGSIRDNILYGKPM------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 660 -i~yv~Q~~~~-~~~ti~eni~~g~~~------~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
||+|.|++.+ .+.||.|||..|.+- + .++.++..+.+++.-|.+ ++...||=|||||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLsVG~qQR 148 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLSVGEQQR 148 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCCcchhHH
Confidence 9999999876 677999999998752 2 234555556666655543 5677899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEE
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1354)
|.|-+|||++|+++||||||+-|-|...+++|+.+.+...+|+|||++||.++++.. ||++-||.+|+++.
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 999999999999999999999999999999999887777899999999999999876 89999999999863
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=363.38 Aligned_cols=197 Identities=25% Similarity=0.359 Sum_probs=165.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~------------- 659 (1354)
.-++++|++++|+. .++|+|+||++.+||+++++|.||+|||||+|.|.|.++|++|+|.++|+
T Consensus 7 ~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 45889999999984 57999999999999999999999999999999999999999999999983
Q ss_pred -EEEEeCCCCC-CCCcHHHHHhcCCCC-------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 660 -IAYVSQTSWI-QSGSIRDNILYGKPM-------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 660 -i~yv~Q~~~~-~~~ti~eni~~g~~~-------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
|+.|.|+..+ ++.||.|||.+|.+. |..+.++..+ +-++.+..... ...+..+||+||||-|+|
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~lg~~~~--~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARLGLDID--PDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHcCCCCC--hhhhhhhCCHHHHHHHHH
Confidence 9999999875 788999999888642 2232222111 11222211111 335677899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEe
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1354)
|||+..++++++||||||+|+.+..+++|+.+.+...+|.++|+|||+++++.. ||||.||+||+.+..
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 999999999999999999999999999999887777899999999999999876 899999999998854
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=346.31 Aligned_cols=206 Identities=28% Similarity=0.436 Sum_probs=187.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 47899999999743 24699999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 661 ~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
+|++|++.+++.|++||+.+......++..+.++..++.+.+..++.|..+..++++.+||||||||++||||++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999988999999987665666777788888999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecC
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1354)
++|||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+..+|++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREA-FKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999987765443 45689999999999998899999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=362.07 Aligned_cols=208 Identities=23% Similarity=0.391 Sum_probs=173.5
Q ss_pred CCCcEEEEeeEEEeCCCC--CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------
Q 000680 591 SDRSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------- 658 (1354)
.+..++++|++|.|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 345699999999997432 24699999999999999999999999999999999999999999998864
Q ss_pred -------------------eEEEEeCCC--CCCCCcHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCc
Q 000680 659 -------------------SIAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDL 710 (1354)
Q Consensus 659 -------------------~i~yv~Q~~--~~~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~ 710 (1354)
.++||+|+| .+++.|++|||.|+.. .+.+ +..+.++.+++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------- 167 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD---------- 167 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------
Confidence 279999998 6788899999998732 2222 2233333333321
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhh-hcCEEE
Q 000680 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRIL 789 (1354)
Q Consensus 711 t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~ 789 (1354)
...++++.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.....+|+|+|+|||+++.+. .||+|+
T Consensus 168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 1234678899999999999999999999999999999999999999998766554456899999999999875 599999
Q ss_pred EEeCCeEEEecChHHHHhc
Q 000680 790 VLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 790 ~l~~G~i~~~g~~~~l~~~ 808 (1354)
+|++|++++.|+++++...
T Consensus 248 vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EEECCEEEEeCCHHHHhcC
Confidence 9999999999999998754
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=366.21 Aligned_cols=203 Identities=27% Similarity=0.344 Sum_probs=173.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEE
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~ 661 (1354)
..++++|+++.|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| ++|
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 36899999999963 4689999999999999999999999999999999999999999999987 489
Q ss_pred EEeCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000680 662 YVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 662 yv~Q~~~~~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1354)
||+|++.++ +.|++|||.|+.. .++ ++.+++++..++.... ..++.+|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~-----------~r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFE-----------DRYVDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHH
Confidence 999999876 5799999999743 222 2344455555554322 35678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
++.+|+++|||||||+||+...+.+.+.+..... .|+|+|+||||.+++.. ||+|++|++|+|++.|+++++....
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999998876655443 38999999999998755 8999999999999999999997654
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-38 Score=349.82 Aligned_cols=200 Identities=27% Similarity=0.384 Sum_probs=167.7
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
++++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 4699999999999999999999999999999999999999999998866
Q ss_pred eEEEEeCCCCCCC-CcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 ~i~yv~Q~~~~~~-~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
.++|++|++.+++ .|++||+.++.. .+. ++..++++.+++.+.. ..+..+|||||||||+
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 2899999987765 599999987521 222 2233444444443322 3566789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999998876655444 48999999999998876 89999999999999999988764
Q ss_pred c
Q 000680 808 A 808 (1354)
Q Consensus 808 ~ 808 (1354)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 3
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=342.82 Aligned_cols=205 Identities=38% Similarity=0.598 Sum_probs=182.5
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|+++.|+.. ..++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 47899999999642 24699999999999999999999999999999999999999999999877 38
Q ss_pred EEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000680 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 661 ~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1354)
+|++|++++++.|++||+.++.. .++++..+.++.+++.+.++..|.|..|.+.++..+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999998888899999988643 34556777888889998889999998888888899999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEec
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1354)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 800 (1354)
++||||||++||+.+.+.+.+.+.... +++|+|++||+++.+..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999887665443 348999999999988779999999999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=365.88 Aligned_cols=202 Identities=30% Similarity=0.389 Sum_probs=173.9
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~y 662 (1354)
.++++|++++|+. ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .+||
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4899999999973 4589999999999999999999999999999999999999999999987 3999
Q ss_pred EeCCCCCC-CCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
|+|++.++ +.||+|||.|+.. .+ .++.+++++..+|.+.+ .+++.+|||||||||+||||+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSE-----------RKYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 99999876 5799999998743 22 23444555555554332 366789999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
+.+|+++|||||||+||+...+++.+.+..... .|.|+|+||||.+++.. ||+|++|++|++++.|+++++.+..
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999877665444 38899999999998765 8999999999999999999998754
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=366.71 Aligned_cols=189 Identities=26% Similarity=0.361 Sum_probs=163.2
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEEEEeCCCCCCC-
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQS- 671 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------------~i~yv~Q~~~~~~- 671 (1354)
+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++||+|++++++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 4689999999999999999999999999999999999999999999877 4999999999875
Q ss_pred CcHHHHHhcCCCC---CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEe
Q 000680 672 GSIRDNILYGKPM---DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1354)
Q Consensus 672 ~ti~eni~~g~~~---~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLD 744 (1354)
.||+|||.|+..+ +. ++..++++..+|... .++++.+|||||||||+||||++++|+++|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-----------~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-----------EHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6999999986432 22 233444444455433 34677899999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 745 DPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 745 ep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
|||||||+.+++.+++.+..... .++|+|+||||++++.. ||+|++|++|++++.|+++++..+.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 99999999999999988776544 48999999999998755 8999999999999999999998654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=356.32 Aligned_cols=204 Identities=22% Similarity=0.402 Sum_probs=172.2
Q ss_pred EEEEeeEEEeCCCCC--CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPELA--IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~--~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
|+++|++|+|+.... +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 689999999974321 3599999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEeCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ---~i~yv~Q~~--~~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.++|++|+| .+++.|+.||+.|+.. .++ +++.++++..++.+++ .++.+.+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHHH
Confidence 279999998 6778899999998742 222 2345555555553322 13567899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
|++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++++.. ||+|++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999887655444468999999999999865 999999999999999999998
Q ss_pred Hhc
Q 000680 806 LLA 808 (1354)
Q Consensus 806 ~~~ 808 (1354)
...
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 653
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=354.62 Aligned_cols=204 Identities=25% Similarity=0.379 Sum_probs=174.3
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| ++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48899999999743234699999999999999999999999999999999999999999999887 38
Q ss_pred EEEeCCCC--CCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 661 ~yv~Q~~~--~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|++|+|. ++..||+|||.|+.. .++ ++..++++..++....+ ..+.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999984 567899999998732 222 34556666667654433 45678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999998876655444 38999999999999877999999999999999999988654
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=364.51 Aligned_cols=204 Identities=28% Similarity=0.375 Sum_probs=175.0
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eE
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SI 660 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i 660 (1354)
...++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .+
T Consensus 12 ~~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 12 SPLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred CceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 345899999999973 4589999999999999999999999999999999999999999999987 39
Q ss_pred EEEeCCCCCC-CCcHHHHHhcCCCC---CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 661 AYVSQTSWIQ-SGSIRDNILYGKPM---DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 661 ~yv~Q~~~~~-~~ti~eni~~g~~~---~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
+|++|++.++ ..||+|||.|+... .+ ++.+++++..++...++ .++.+|||||||||+|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQ-----------RKPHQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHHHHH
Confidence 9999998776 66999999997432 22 23455566666654443 456789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
|++.+|+++|||||||+||++.++.+.+.+..... .|.|+|+||||.+++.. +|+|++|++|+|++.|+++++....
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999998877665444 48999999999998654 9999999999999999999998754
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=355.91 Aligned_cols=204 Identities=23% Similarity=0.375 Sum_probs=173.0
Q ss_pred EEEEeeEEEeCCCC--CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997432 14699999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEeCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ---~i~yv~Q~~--~~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.|+||+|+| .+++.|++|||.|+.. .+. ++.+++++.++|..++. ..++.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 289999998 5678899999998632 222 34556666666653321 2567789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
|++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999998876655444 48999999999999865 89999999999999999998
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8654
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=355.03 Aligned_cols=206 Identities=26% Similarity=0.412 Sum_probs=172.1
Q ss_pred cEEEEeeEEEeCCCC--CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
.++++|+++.|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999997432 14699999999999999999999999999999999999999999998876
Q ss_pred --eEEEEeCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 --SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 --~i~yv~Q~~--~~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
++||+||+| .+++.|++|||.|+.. .+. ++..++++.++|.. .+...+++.+||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHH
Confidence 389999998 4678899999998632 232 23445555555531 112346678999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
++||||++.+|+++||||||++||+.+.+++.+.+..... .|+|+|++||+++++.. ||+|++|++|++++.|+.+++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999998876655444 38999999999999865 999999999999999999998
Q ss_pred Hhc
Q 000680 806 LLA 808 (1354)
Q Consensus 806 ~~~ 808 (1354)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13637 233 FKE 235 (287)
T ss_pred HhC
Confidence 653
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=364.02 Aligned_cols=203 Identities=28% Similarity=0.420 Sum_probs=174.1
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCC--cEEEEcC-----------e
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS--GTVNLYG-----------S 659 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~--G~i~~~g-----------~ 659 (1354)
+.++++|++++|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++ |+|.++| .
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 46899999999973 368999999999999999999999999999999999999999 9999987 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
|+||+|++.++ ..||+|||.|+.. ..+ ++.+++++..+|.+.. .+++.+|||||||||+||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAA-----------AHLPAQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchh-----------hCChhhCCHHHHHHHHHH
Confidence 89999999876 5699999998642 222 2344555555554333 356779999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC--CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||++.+|+++|||||||+||+...+++.+.+.....+ |.|+|+||||++++.. +|+|++|++|++++.|+++++.++
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998877655444 7899999999998765 899999999999999999999875
Q ss_pred C
Q 000680 809 G 809 (1354)
Q Consensus 809 ~ 809 (1354)
.
T Consensus 230 p 230 (362)
T TIGR03258 230 P 230 (362)
T ss_pred c
Confidence 4
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=362.10 Aligned_cols=201 Identities=31% Similarity=0.433 Sum_probs=172.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
++++|+++.|+. .++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++| +++|+
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEE
Confidence 789999999964 4699999999999999999999999999999999999999999999987 49999
Q ss_pred eCCCCCCC-CcHHHHHhcCCCC-------CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 664 SQTSWIQS-GSIRDNILYGKPM-------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 664 ~Q~~~~~~-~ti~eni~~g~~~-------~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|++.++. .|++||+.|+... +. ++..+.++..++.+.. ..++.+|||||||||+||
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGq~QRvalA 148 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA-----------DRYPAQLSGGQKQRVALA 148 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHHHH
Confidence 99998764 7999999987431 21 2334445555554322 356789999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
||++.+|+++|||||||+||+...+.+.+.+.....+ |+|+|+||||++.+.. ||+|++|++|++++.|+++++..++
T Consensus 149 rAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 149 RALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228 (353)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999998766654444 7899999999998766 8999999999999999999997654
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=344.67 Aligned_cols=199 Identities=30% Similarity=0.406 Sum_probs=168.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 789999999964 4699999999999999999999999999999999999999999999876 38999
Q ss_pred eCCCCCC-CCcHHHHHhcCCCC-------CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 664 SQTSWIQ-SGSIRDNILYGKPM-------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 664 ~Q~~~~~-~~ti~eni~~g~~~-------~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|+|.++ +.|++||+.++... +. ++..+.++.+++.+.. ..++.+||||||||++||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 148 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVALA 148 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHHHH
Confidence 9999876 46999999876321 11 1233444444443322 356678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||++.+|+++||||||++||+++.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 999999999999999999999999998876555444 37899999999998765 89999999999999999988764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=355.95 Aligned_cols=202 Identities=24% Similarity=0.388 Sum_probs=171.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eE
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i 660 (1354)
..++++|+++.|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 46899999999963 4699999999999999999999999999999999999999999999976 49
Q ss_pred EEEeCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 661 AYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 661 ~yv~Q~~~~~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
||+||++.++ +.|++||+.+... .+. ++.+++++.+++.+.. ..+..+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-----------DAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-----------cCchhhCCHHHHHHHHHHH
Confidence 9999998776 5799999985221 121 2333445555443322 2456789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|++++|++++|||||++||+...+.+++.+.....+|+|+|++||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999988765554568999999999999976 899999999999999999998653
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=353.75 Aligned_cols=204 Identities=25% Similarity=0.423 Sum_probs=171.3
Q ss_pred EEEEeeEEEeCCCC--CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 13699999999999999999999999999999999999999999998853
Q ss_pred -----------------------eEEEEeCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCC
Q 000680 659 -----------------------SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFD 706 (1354)
Q Consensus 659 -----------------------~i~yv~Q~~--~~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~ 706 (1354)
.|||++|+| .++..||+|||.|+.. .++ ++..++++.++|..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---- 158 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY---- 158 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 279999986 4677899999998742 222 2345555555554221
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-c
Q 000680 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-V 785 (1354)
Q Consensus 707 ~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~ 785 (1354)
.++++.+||||||||++||||++.+|+++||||||++||+...+.+.+.+.....+|+|+|+||||++.+.. |
T Consensus 159 ------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 159 ------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred ------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 236678999999999999999999999999999999999999999887665544568999999999998765 8
Q ss_pred CEEEEEeCCeEEEecChHHHHhc
Q 000680 786 DRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 786 d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|+|++|++|++++.|+++++..+
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999998654
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=363.44 Aligned_cols=202 Identities=26% Similarity=0.382 Sum_probs=173.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~y 662 (1354)
.++++|++++|+. .++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++| .++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4789999999963 4689999999999999999999999999999999999999999999977 3999
Q ss_pred EeCCCCCC-CCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
++|++.++ +.|++||+.|+.. .+ +++.+++++.+++.+.++ .+..+|||||||||+||||+
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-----------~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHHHH
Confidence 99998876 5699999998643 22 234455666666654332 55678999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
+.+|+++||||||++||+...+.+.+.+..... .|+|+|+||||++.+.. ||+|++|++|++++.|+++++....
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999998876655444 38899999999998765 8999999999999999999987653
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=345.12 Aligned_cols=199 Identities=22% Similarity=0.344 Sum_probs=166.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~i 660 (1354)
++++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 467899999963 4699999999999999999999999999999999999999999998876 28
Q ss_pred EEEeCCCCCCC-CcHHHHHhcCCCCC-------------H----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 661 AYVSQTSWIQS-GSIRDNILYGKPMD-------------K----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 661 ~yv~Q~~~~~~-~ti~eni~~g~~~~-------------~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
+|++|++.++. .|++||+.++.... . ++..+.++..++. ...+.++.+|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-----------DLADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-----------chhhCChhhCCH
Confidence 99999987765 59999998753210 1 1222333333332 123467789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|||||++||||++.+|++++|||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999988766544478999999999999876 89999999999999999
Q ss_pred hHHHHh
Q 000680 802 YQELLL 807 (1354)
Q Consensus 802 ~~~l~~ 807 (1354)
++++..
T Consensus 227 ~~~~~~ 232 (236)
T cd03219 227 PDEVRN 232 (236)
T ss_pred HHHhcc
Confidence 888753
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=352.10 Aligned_cols=205 Identities=21% Similarity=0.411 Sum_probs=170.5
Q ss_pred cEEEEeeEEEeCCCC--CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
.++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997432 24699999999999999999999999999999999999999999998876
Q ss_pred ----eEEEEeCCC--CCCCCcHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 ----~i~yv~Q~~--~~~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.|||++|+| .+++.|++|||.|+.. .+.+ +..+.++.++|..+. ...++.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV----------MSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHH
Confidence 379999997 4677899999998632 2322 233444444443211 2356789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
||++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999998876655443 48999999999999865 8999999999999999999
Q ss_pred HHHhc
Q 000680 804 ELLLA 808 (1354)
Q Consensus 804 ~l~~~ 808 (1354)
++.+.
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 88654
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=349.52 Aligned_cols=199 Identities=29% Similarity=0.460 Sum_probs=171.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48899999999632 4699999999999999999999999999999999999999999999877 38
Q ss_pred EEEeCCC--CCCCCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 661 AYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 661 ~yv~Q~~--~~~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|++|+| .++..|++||+.|+.. .+ ++++.++++.+++.+..+ ....+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRD-----------KPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CChhhCCHHHHHHHHHH
Confidence 9999998 5678899999998632 22 234556666666654433 45568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. ||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999887665554458999999999999865 999999999999999998754
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=336.78 Aligned_cols=198 Identities=42% Similarity=0.792 Sum_probs=177.6
Q ss_pred EEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------
Q 000680 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------------- 658 (1354)
Q Consensus 596 ~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----------------- 658 (1354)
.+.|++|+|+.+ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 567899999754 4699999999999999999999999999999999999999999998854
Q ss_pred eEEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000680 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 659 ~i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1354)
.++|++|+|.+++.|++||+.++.+.+.++..++++++++.+.++.+|.|+++.++.++.+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 38999999998889999999987666666677888999998888889999999889999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHH-HHHHh-cCCcEEEEEcCCcchhhhcCEEEEEeCCe
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNE-CVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1354)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~-~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1354)
+++||||||++||+.+.+.+.+. ++... .+++|+|++||+.+.+..+|++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988773 44433 35789999999999988899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=338.74 Aligned_cols=192 Identities=31% Similarity=0.417 Sum_probs=161.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 468899999964 4699999999999999999999999999999999999999999999876 38999
Q ss_pred eCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 664 SQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 664 ~Q~~~~~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
+|++.++ +.|++||+.++.. .+. ++..+.++.+++.+.++ +...+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHHHh
Confidence 9998765 5799999987532 122 23445555555544332 456789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++++.. ||++++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999998876655444 48999999999998876 8999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=335.39 Aligned_cols=188 Identities=34% Similarity=0.503 Sum_probs=161.3
Q ss_pred EEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEEEeCC
Q 000680 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYVSQT 666 (1354)
Q Consensus 597 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----------~i~yv~Q~ 666 (1354)
++|++++|+.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|+
T Consensus 2 ~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 57899999642 4699999999999999999999999999999999999999999999877 48999999
Q ss_pred C--CCCCCcHHHHHhcCCC---CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 000680 667 S--WIQSGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1354)
Q Consensus 667 ~--~~~~~ti~eni~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1354)
| .+++.|++||+.++.. .++++..++++.+++.+.++ .+..+||||||||++||||++.+|+++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-----------RHPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-----------CCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 7 4567899999988643 12345667777777754433 455689999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE
Q 000680 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1354)
Q Consensus 742 lLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1354)
||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999887665544568999999999999875 8999999999974
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=358.50 Aligned_cols=203 Identities=27% Similarity=0.371 Sum_probs=170.8
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
++++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999997321 35799999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeCCCCCCC-CcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 -~i~yv~Q~~~~~~-~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
+|+|++|++.++. .|++||+.++.. .+. ++..+.++..++.+. ...++.+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHH
Confidence 3999999998764 799999987532 222 233344444444332 23567789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999876655443 48999999999999876 89999999999999999999876
Q ss_pred c
Q 000680 808 A 808 (1354)
Q Consensus 808 ~ 808 (1354)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=339.45 Aligned_cols=197 Identities=21% Similarity=0.369 Sum_probs=167.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 468999999963 4699999999999999999999999999999999999999999999876 3899
Q ss_pred EeCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
++|++.++. .|++||+.++.. .+ .++.++.++.+++.+..+ .+..+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-----------RLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 999987654 699999987421 21 234455666666654332 45678999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
+.+|+++||||||++||+++.+.+.+.+.....+ |+|+|++||+++++.. +|++++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999988766655444 8899999999999876 899999999999999887764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=339.11 Aligned_cols=190 Identities=24% Similarity=0.411 Sum_probs=160.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
++++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6789999999643 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEeCCCCCC-CCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 SIAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ~i~yv~Q~~~~~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.++|++|++.++ +.|++||+.++.. .+ +++..++++.+++.+..+ ....+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-----------ALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 389999999775 4699999987521 11 234555666666654333 4556899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeE
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1354)
|||++++|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++++.. ||++++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999887665544468999999999999876 899999999975
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=341.37 Aligned_cols=195 Identities=31% Similarity=0.455 Sum_probs=164.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCc-----cCCCcEEEEcC-----------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI-----PKISGTVNLYG----------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~-----~~~~G~i~~~g----------- 658 (1354)
++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 468999999964 36999999999999999999999999999999999999 99999998876
Q ss_pred ----eEEEEeCCCCCCCCcHHHHHhcCCCC----C----HHHHHHHHHHhccHHHHhcCCCCCcccccCC--CCCCChHH
Q 000680 659 ----SIAYVSQTSWIQSGSIRDNILYGKPM----D----KARYDKAIKACALDKDINNFDHGDLTEIGQR--GLNLSGGQ 724 (1354)
Q Consensus 659 ----~i~yv~Q~~~~~~~ti~eni~~g~~~----~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~--g~~LSgGQ 724 (1354)
.++|++|++.+++.|++||+.++... . +++..++++.+++.+.+. .+ +.+|||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~~LSgG~ 146 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVK-----------DRLHALGLSGGQ 146 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHh-----------ccCCcccCCHHH
Confidence 38999999987788999999875321 1 123445555555544332 22 57899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 725 kqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
|||++||||++.+|+++||||||++||+.+.+.+++.+.....+ +|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcc
Confidence 99999999999999999999999999999999998766554444 899999999998875 8999999999999998866
Q ss_pred H
Q 000680 804 E 804 (1354)
Q Consensus 804 ~ 804 (1354)
+
T Consensus 226 ~ 226 (227)
T cd03260 226 Q 226 (227)
T ss_pred c
Confidence 5
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=338.97 Aligned_cols=197 Identities=31% Similarity=0.422 Sum_probs=165.0
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEeC
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------~i~yv~Q 665 (1354)
++++|++++|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999997421 14699999999999999999999999999999999999999999999977 4899999
Q ss_pred CCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 000680 666 TSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1354)
Q Consensus 666 ~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1354)
++.++. .|++||+.++.. .+ .++..+.++.+++.+.++ .+..+||||||||++||||++++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHHHHHcC
Confidence 998765 799999987532 11 234455566666654333 45678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEe--CCeEEEecCh
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLE--GGQITQSGNY 802 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 802 (1354)
|+++||||||++||+.+.+.+++.+..... .++|+|++||+++.+.. ||++++|+ +|+++++++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999876655433 47899999999998765 89999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=340.45 Aligned_cols=202 Identities=25% Similarity=0.377 Sum_probs=172.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4789999999963 4699999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCCCCCCcHHHHHhcCCCC---CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 000680 661 AYVSQTSWIQSGSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1354)
Q Consensus 661 ~yv~Q~~~~~~~ti~eni~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1354)
+|++|++.+++.|++||+.++... ..++..+.++.+++..++ ..+++.+||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999988888999999876432 233445566666664222 1256778999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999999999999999998876655444 48999999999999876 899999999999999999988754
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=359.03 Aligned_cols=205 Identities=26% Similarity=0.361 Sum_probs=173.7
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eE
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SI 660 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i 660 (1354)
...++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .|
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 346999999999963 4689999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 661 AYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 661 ~yv~Q~~~~~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
||++|++-++ +.||.|||.|+.. .++ ++..+.++..++.... ..++.+|||||||||+|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA-----------KRKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 9999999876 5699999998742 222 2334445555554322 2566799999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcCc
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1354)
|++.+|+++|||||||+||+...+.+.+.+..... .|.|+|+||||.+++.. +|+|++|++|++++.|+++++..+..
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 99999999999999999999999998876655433 47999999999998655 89999999999999999999986543
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=346.45 Aligned_cols=203 Identities=24% Similarity=0.429 Sum_probs=174.5
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|+++.|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 58999999999642 34699999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 661 AYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 661 ~yv~Q~~--~~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|++|+| .+++.|++|||.++.. .++ ++..++++.++|...++ .+..+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLN-----------REPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHH
Confidence 9999998 4667899999988632 122 34556666667765544 45568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||++.+|+++||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999998766554444 8999999999999888999999999999999999888654
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=333.76 Aligned_cols=192 Identities=22% Similarity=0.347 Sum_probs=165.8
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 468999999963 4699999999999999999999999999999999999999999999977 38999
Q ss_pred eCCCCCC-CCcHHHHHhcCC---CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000680 664 SQTSWIQ-SGSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 664 ~Q~~~~~-~~ti~eni~~g~---~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1354)
+|++.++ +.|++||+.++. ..++++.+++++..++.+.++ +++.+||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9998765 679999998753 124556666777777755433 4567899999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999887665544468999999999999876 8999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=342.53 Aligned_cols=199 Identities=31% Similarity=0.419 Sum_probs=166.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
++++|++++|+.+ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4688999999641 4699999999999999999999999999999999999999999998876
Q ss_pred eEEEEeCCCCCCC-CcHHHHHhcCCC------------CC---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 659 SIAYVSQTSWIQS-GSIRDNILYGKP------------MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 659 ~i~yv~Q~~~~~~-~ti~eni~~g~~------------~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
.++|++|++.++. .|++||+.++.. .. .++..+.++..++... ...++.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 3899999987654 799999987531 01 1223333444444322 2356789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
|||||++||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999876655443 48999999999999885 8999999999999999
Q ss_pred ChHHHH
Q 000680 801 NYQELL 806 (1354)
Q Consensus 801 ~~~~l~ 806 (1354)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 988864
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=342.33 Aligned_cols=198 Identities=30% Similarity=0.425 Sum_probs=166.4
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
++++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 678999999962 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEeCCCCCC-CCcHHHHHhcCCCC------------C---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 659 SIAYVSQTSWIQ-SGSIRDNILYGKPM------------D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 659 ~i~yv~Q~~~~~-~~ti~eni~~g~~~------------~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
.++|++|++.++ +.|++||+.++... . .++..++++.+++...+ ..++.+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 289999998765 47999999875310 1 12334445555554332 356789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999998876655433 47899999999999865 8999999999999999
Q ss_pred ChHHH
Q 000680 801 NYQEL 805 (1354)
Q Consensus 801 ~~~~l 805 (1354)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 98886
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=345.82 Aligned_cols=201 Identities=26% Similarity=0.436 Sum_probs=170.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~i 660 (1354)
++++|++++|+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 678999999963 24599999999999999999999999999999999999999999998876 28
Q ss_pred EEEeCCCC--CCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 661 ~yv~Q~~~--~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|++|+|. +++.|++|||.++.. .+. ++..++++.+++.... ...+.+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYR-----------HRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCCcccCCHHHHHHHHHH
Confidence 99999985 467899999988632 222 2344555555554433 255678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||++.+|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999887765544568999999999999977999999999999999999987643
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=336.81 Aligned_cols=198 Identities=30% Similarity=0.471 Sum_probs=165.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~i 660 (1354)
++++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 468999999963 3699999999999999999999999999999999999999999999876 28
Q ss_pred EEEeCCCCCCC-CcHHHHHhcCCCCC-----HHHHHHHHHHh-ccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000680 661 AYVSQTSWIQS-GSIRDNILYGKPMD-----KARYDKAIKAC-ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 661 ~yv~Q~~~~~~-~ti~eni~~g~~~~-----~~~~~~~~~~~-~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1354)
+|++|++.++. .|++||+.++.... .++..++++.. .+.. ....++.+||||||||++||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKE-----------RRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhh-----------hhhCchhhCCHHHHHHHHHHHH
Confidence 99999997765 59999998764321 11222333332 1211 1236678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHH
Q 000680 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
++.+|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999999999999999887665544468999999999998766 8999999999999999888764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=359.59 Aligned_cols=201 Identities=24% Similarity=0.429 Sum_probs=173.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4789999999963 4699999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCCCC-CCCcHHHHHhcCCC-----C------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 661 AYVSQTSWI-QSGSIRDNILYGKP-----M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 661 ~yv~Q~~~~-~~~ti~eni~~g~~-----~------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
||++|++.+ ++.|++||+.++.. + +.++.+++++..++.+.. .....+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~-----------~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA-----------DRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHH
Confidence 999999876 68899999988641 1 123445556655554332 245678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
+||||++++|+++||||||++||+.....+.+.+.....+|+|+|++||+++.+.+ ||++++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999887665554468899999999999865 89999999999999999999875
Q ss_pred c
Q 000680 808 A 808 (1354)
Q Consensus 808 ~ 808 (1354)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=354.64 Aligned_cols=203 Identities=26% Similarity=0.406 Sum_probs=171.3
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------e
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------S 659 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~ 659 (1354)
...|+++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 39 ~~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 39 TVAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred ceeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 346999999999973 4699999999999999999999999999999999999999999999987 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcC-CC--CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYG-KP--MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g-~~--~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+||+||++.++ ..|++||+.+. .. .+. ++.+++++.++|.+.. .++..+||||||||++||
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-----------~~~~~~LS~G~kqrv~lA 184 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DARVSDLSGGMKRRLTLA 184 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------CCChhhCCHHHHHHHHHH
Confidence 99999998874 67999999752 11 121 2233344444443221 256678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||++++|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999988766555568999999999999976 899999999999999999998643
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=337.18 Aligned_cols=191 Identities=28% Similarity=0.411 Sum_probs=159.0
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
++++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997421 14699999999999999999999999999999999999999999998865
Q ss_pred --eEEEEeCCCCCCC-CcHHHHHhcCCCC---C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 659 --SIAYVSQTSWIQS-GSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 659 --~i~yv~Q~~~~~~-~ti~eni~~g~~~---~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
.++|++|++.++. .|++||+.++... + +++..++++.+++.+.+ ..++.+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL-----------NHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-----------hcChhhcCHHHHHHH
Confidence 3899999988765 5999999885321 1 12344455555554322 356678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeE
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1354)
+||||++.+|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999998876655444 48999999999998877899999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=338.31 Aligned_cols=197 Identities=24% Similarity=0.348 Sum_probs=164.8
Q ss_pred cEEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
.++++|+++.|+.+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 488999999997432 14699999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEeCCCCCCC-CcHHHHHhcCC---CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 ---SIAYVSQTSWIQS-GSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 ---~i~yv~Q~~~~~~-~ti~eni~~g~---~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
.++|++|++.++. .|++||+.++. ..+. ++..++++.+++.+. ..+++.+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 3899999987764 59999998742 1221 234445555555332 235667899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecC
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1354)
++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999998876655443 5899999999999998889999999999998765
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=350.46 Aligned_cols=201 Identities=26% Similarity=0.391 Sum_probs=169.8
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eE
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i 660 (1354)
..++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 46899999999963 4699999999999999999999999999999999999999999999876 48
Q ss_pred EEEeCCCCCC-CCcHHHHHhcC-C--CCCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 661 AYVSQTSWIQ-SGSIRDNILYG-K--PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 661 ~yv~Q~~~~~-~~ti~eni~~g-~--~~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
||+||++.++ ..|++||+.+. . ..+.. +.+++++.+++.+.. ..+..+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCchhhCCHHHHHHHHHHH
Confidence 9999998776 57999999742 1 12222 233344444443322 2556789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
|++++|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999987766555568999999999999876 89999999999999999999864
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=347.54 Aligned_cols=204 Identities=24% Similarity=0.423 Sum_probs=170.3
Q ss_pred cEEEEeeEEEeCCCC--CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
.++++|+++.|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997421 24699999999999999999999999999999999999999999998876
Q ss_pred ----eEEEEeCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 ----~i~yv~Q~~--~~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|+| .+++.|++||+.++.. ... ++..++++.+++..++ ...++.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCCHHHH
Confidence 279999997 4667899999987531 222 2344455555554221 1356789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999887665544468999999999999865 89999999999999999998
Q ss_pred HHh
Q 000680 805 LLL 807 (1354)
Q Consensus 805 l~~ 807 (1354)
+.+
T Consensus 232 ~~~ 234 (287)
T PRK13641 232 IFS 234 (287)
T ss_pred Hhc
Confidence 764
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=330.01 Aligned_cols=189 Identities=25% Similarity=0.471 Sum_probs=163.7
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~ 659 (1354)
+.++++|++++|+.. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 568999999999743 24699999999999999999999999999999999999999999999876 4
Q ss_pred EEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000680 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 660 i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1354)
++|++|+|.+++.|++||+.+...++.++..+.++ +++++.+||||||||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999988899999998654444332222221 246778999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecC
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1354)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~ 801 (1354)
++||||||++||+...+.+.+.+... .+++|+|++||+++.+..+|++++|++|++.+.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREE-FTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999887765544 46899999999999987899999999999998775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=313.78 Aligned_cols=504 Identities=15% Similarity=0.146 Sum_probs=320.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000680 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESF-TQRHCFFGSRRSGM 347 (1354)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~ 347 (1354)
-.++|.+++.++....+.+...+ ++-.++-.+-++.-+..+.......+.+++.+..++.+. +..--.+..+..-.
T Consensus 5 l~llr~nr~~~i~~~a~s~a~g~---~g~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is~lg~t~~gq~~I~ 81 (546)
T COG4615 5 LLLLRQNRWPFISVMALSLASGA---LGIGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQLGLTTLGQHFIY 81 (546)
T ss_pred HHHhcccccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788777665544443333 333333333333322222111111122222222222221 12112223333444
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000680 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1354)
Q Consensus 348 rir~~l~~~iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~plqi~~~~~~L~~~lG~~~l~gl~v~ 427 (1354)
++|..++..|..--+ ..-.+..++.+..-++.|+..|.-.+..+..+-.+.+-+..++..|+.+-+...+..++.+
T Consensus 82 klr~~~~~kil~tpl----erier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~i 157 (546)
T COG4615 82 KLRSEFIKKILDTPL----ERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWI 157 (546)
T ss_pred HHHHHHHHHHhcCHH----HHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666665554443222 2223456788999999999998866666666655555566666677766665555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHH-
Q 000680 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE--KFKS-LIESRREKEFKWLSEAQLRKAYG- 503 (1354)
Q Consensus 428 ~i~~~l~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~--~f~~-~i~~~R~~El~~l~~~~~~~~~~- 503 (1354)
++.+..+.....+..++..+..+..|+-.+..+.++.|-|.+|+..=.. .+.+ .+...++.|- ...+...+.
T Consensus 158 vv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~----~~~~~n~f~~ 233 (546)
T COG4615 158 VVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH----HIIRANTFHL 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh----hhhhhhHHHH
Confidence 6666667666666666677777888999999999999999998865322 1222 2222333221 111112221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcch
Q 000680 504 TVIYWMSPTIISSVIFLGCALTGSAPL-NASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1354)
Q Consensus 504 ~~~~~~~p~~v~~~~f~~~~l~~~~~L-t~~~~Ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e~~~~~ 582 (1354)
....|..-.+.+++....|.... -.. +...+.|.....-.++.|+.+....++.+.+|.++++||.++=.+|+...-.
T Consensus 234 la~~~~ni~l~~lIGlvf~lal~-~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~ 312 (546)
T COG4615 234 LAVNWSNIMLLGLIGLVFWLALS-LGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFP 312 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCC
Confidence 12223322222222211111111 011 1224444444455679999999999999999999999999985444332111
Q ss_pred hhhccccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe---
Q 000680 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--- 659 (1354)
Q Consensus 583 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~--- 659 (1354)
+....++-..++++|+.|+|.+. ..-+..||++|++||++-|+|.||||||||++.+.|+++|++|+|.++|+
T Consensus 313 --~~q~~p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~ 388 (546)
T COG4615 313 --RPQAFPDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVS 388 (546)
T ss_pred --CCCcCCcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCC
Confidence 11111224579999999999864 36789999999999999999999999999999999999999999999984
Q ss_pred ----------EEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 660 ----------IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 660 ----------i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
++-|+-+-|+|+.+ +-++. -.++..++.++..++....+ +.+|..+ ...||-|||+|+
T Consensus 389 ~e~ledYR~LfSavFsDyhLF~~l-----l~~e~~as~q~i~~~LqrLel~~kts-l~d~~fs-----~~kLStGQkKRl 457 (546)
T COG4615 389 AEQLEDYRKLFSAVFSDYHLFDQL-----LGPEGKASPQLIEKWLQRLELAHKTS-LNDGRFS-----NLKLSTGQKKRL 457 (546)
T ss_pred CCCHHHHHHHHHHHhhhHhhhHhh-----hCCccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----ccccccchHHHH
Confidence 22333333433322 11222 34566677777666665443 3444433 256999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHH-hcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEe
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1354)
++--|+.-+.|||++||=-+.-||+-++..++..+-. ..+||||+.||||-.+...|||++.|++|++++.
T Consensus 458 All~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 9999999999999999999999999999988877643 4579999999999999999999999999999864
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=339.76 Aligned_cols=197 Identities=27% Similarity=0.316 Sum_probs=168.2
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEe
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVS 664 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------~i~yv~ 664 (1354)
..++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 46999999999963 4699999999999999999999999999999999999999999999876 489999
Q ss_pred CCCCCCC-CcHHHHHhcCCCC-CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 000680 665 QTSWIQS-GSIRDNILYGKPM-DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1354)
Q Consensus 665 Q~~~~~~-~ti~eni~~g~~~-~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ill 742 (1354)
|++.+++ .|++||+.++... .+++..+.++..++.+.+ .+++.+||||||||++||||++.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9987765 7999999986321 234455666666665433 35677999999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 743 FDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 743 LDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
|||||++||+.+.+.+.+.+..... .++|+|++||+++++.. ||+|++|++|++++.|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999998876655433 47899999999999865 8999999999999887654
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=338.03 Aligned_cols=200 Identities=24% Similarity=0.389 Sum_probs=168.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 678999999963 4699999999999999999999999999999999999999999999876 3899
Q ss_pred EeCCCCC-CCCcHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWI-QSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~-~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
++|++.+ +..|++||+.++.. ...+ +..+.++..++.+ ..++++.+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-----------RADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHH
Confidence 9999876 57899999986532 2221 2233344433332 23466789999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
+.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+..||++++|++|++++.|+++++.++
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999876655443 58999999999999888999999999999999999888654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=342.34 Aligned_cols=205 Identities=24% Similarity=0.390 Sum_probs=171.0
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g--------- 658 (1354)
..++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 46899999999963 369999999999999999999999999999999999864 5899998865
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCC---C-C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQ 724 (1354)
.++|++|++.+++.|++||+.++.. . . +++.++.++.+++.+.+. +..++.+.+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 3899999998887899999987521 1 1 223444555555543222 12346778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 725 kqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
||||+||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL-KARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988765544 457899999999999865 8999999999999999999
Q ss_pred HHHhc
Q 000680 804 ELLLA 808 (1354)
Q Consensus 804 ~l~~~ 808 (1354)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 88644
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=346.19 Aligned_cols=198 Identities=29% Similarity=0.389 Sum_probs=166.3
Q ss_pred EEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------e
Q 000680 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------S 659 (1354)
Q Consensus 597 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------------~ 659 (1354)
++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 27 ~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 27 KEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 4566666653 4689999999999999999999999999999999999999999998865 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
++|++|++.++ +.|++||+.++.. .+ .++..++++.+++.+.++ ....+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEH-----------KYPDELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 89999999876 5799999987521 22 234455666666654443 45568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999998876655433 48999999999998865 899999999999999999998754
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=340.66 Aligned_cols=204 Identities=25% Similarity=0.359 Sum_probs=172.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEEcC------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG------------ 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~---~~~G~i~~~g------------ 658 (1354)
.|+++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999963 469999999999999999999999999999999999974 6899999876
Q ss_pred -eEEEEeCCCCCCCCcHHHHHhcCCCC---------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 659 -SIAYVSQTSWIQSGSIRDNILYGKPM---------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 659 -~i~yv~Q~~~~~~~ti~eni~~g~~~---------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
.++|++|++.+++.|++||+.++... ..++..+.++.+++.+.+.. ...+++.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 38999999998889999999875311 11234556666666543332 13467789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
+||||++++|++++|||||++||+++.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999887755443 458999999999998875 89999999999999999998864
Q ss_pred c
Q 000680 808 A 808 (1354)
Q Consensus 808 ~ 808 (1354)
.
T Consensus 231 ~ 231 (246)
T PRK14269 231 N 231 (246)
T ss_pred C
Confidence 3
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=335.22 Aligned_cols=205 Identities=29% Similarity=0.439 Sum_probs=175.6
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------ 658 (1354)
..+.++++|++++|+.....++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 44679999999999753234699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeCCCCCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 000680 659 -SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1354)
Q Consensus 659 -~i~yv~Q~~~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~ 736 (1354)
.++|++|++.+++.|++||+.++.. .....+.+..+...+.+.++.++.|-.+.+++++.+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 3899999998888899999998643 22223333444455677788887776677788899999999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeE
Q 000680 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1354)
Q Consensus 737 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1354)
+|+++||||||++||++..+.+.+.+... .+++|+|++||+++++..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDW-PERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999987765543 346899999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=337.97 Aligned_cols=202 Identities=27% Similarity=0.406 Sum_probs=168.3
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 67899999996431 12699999999999999999999999999999999999999999998865
Q ss_pred -eEEEEeCCCCCCC-CcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 -~i~yv~Q~~~~~~-~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
.++|++|++.++. .|++||+.++.. .+. ++..+.++..++.+.+ ..+..+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKA-----------DAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hcChhhCCHHHHHHHH
Confidence 3899999998775 799999987522 221 2334444444444322 3566789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999988766554443 8999999999999876 89999999999999999888753
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=334.09 Aligned_cols=189 Identities=37% Similarity=0.572 Sum_probs=159.7
Q ss_pred EEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEeCCCC
Q 000680 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQTSW 668 (1354)
Q Consensus 597 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------~i~yv~Q~~~ 668 (1354)
++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|++.
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 5789999963 4689999999999999999999999999999999999999999999987 3999999986
Q ss_pred C---CCCcHHHHHhcCCCC-----------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 669 I---QSGSIRDNILYGKPM-----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 669 ~---~~~ti~eni~~g~~~-----------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
+ ++.|++||+.++... .+++.+++++.+++.+.++ .+..+||||||||++||||+
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVLLARAL 147 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHHH
Confidence 5 457999999875321 1234556666666654433 45678999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
+.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. ||++++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999887666544478999999999999876 8999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=334.85 Aligned_cols=195 Identities=21% Similarity=0.355 Sum_probs=163.5
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEE
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~ 661 (1354)
++++|++++|+... ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 67899999997431 12699999999999999999999999999999999999999999999876 389
Q ss_pred EEeCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000680 662 YVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 662 yv~Q~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1354)
|++|++.++. .|++||+.+... .+ .++..+.++..++.+.+ .+++.+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-----------DRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hhhhhhcCHHHHHHHHHHHH
Confidence 9999998766 599999976321 11 22344555555554333 35678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999887665554568999999999998876 8999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=345.71 Aligned_cols=202 Identities=26% Similarity=0.448 Sum_probs=172.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
.++++|+++.|+. +.++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 5899999999963 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEeCCC--CCCCCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 659 SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 ~i~yv~Q~~--~~~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
.++|++|+| .+++.|++||+.++.. +. .++..++++.+++.... ..++.+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 289999998 4678899999987521 22 23445556666665432 3567899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999988766554443 8999999999999875 99999999999999999999865
Q ss_pred c
Q 000680 808 A 808 (1354)
Q Consensus 808 ~ 808 (1354)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=337.59 Aligned_cols=199 Identities=23% Similarity=0.401 Sum_probs=166.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~i 660 (1354)
++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 468899999963 4699999999999999999999999999999999999999999998865 38
Q ss_pred EEEeCCCCCCC-CcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHH
Q 000680 661 AYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 661 ~yv~Q~~~~~~-~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lAR 732 (1354)
+|++|++.++. .|++||+.++.. ... ++.++.++..++.+. ..+.+.+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL-----------RKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHH
Confidence 99999987765 599999987532 111 122334444444322 23667899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 733 al~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
|++.+|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999887665544468999999999988766 89999999999999999888754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=329.78 Aligned_cols=206 Identities=27% Similarity=0.411 Sum_probs=174.5
Q ss_pred cEEEEeeEEEeCCCC---------------------CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCc
Q 000680 594 SVKIQEGNFSWDPEL---------------------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~---------------------~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G 652 (1354)
.|+++|++.-+..+. ...-++|+||+|+.||+.+|.|-+|||||||++++.++.+|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 567777777665432 12347899999999999999999999999999999999999999
Q ss_pred EEEEcC-----------------eEEEEeCCCC-CCCCcHHHHHhcCCCCC-------HHHHHHHHHHhccHHHHhcCCC
Q 000680 653 TVNLYG-----------------SIAYVSQTSW-IQSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDH 707 (1354)
Q Consensus 653 ~i~~~g-----------------~i~yv~Q~~~-~~~~ti~eni~~g~~~~-------~~~~~~~~~~~~l~~~l~~l~~ 707 (1354)
+|.++| +++.|+|+.- +++.||.||+.||.+.. +++..++++..+|+..-+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~---- 159 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD---- 159 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh----
Confidence 999988 4999999965 57789999999997632 334555666677766544
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-c
Q 000680 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-V 785 (1354)
Q Consensus 708 gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~ 785 (1354)
.++.+||||+||||.|||||..+|||+|+|||||||||-.+..+-++++.... -+||+|+||||+++.-+ .
T Consensus 160 -------~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 160 -------KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -------cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 45668999999999999999999999999999999999999999888876543 37899999999998655 7
Q ss_pred CEEEEEeCCeEEEecChHHHHhcCc
Q 000680 786 DRILVLEGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 786 d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1354)
|||.+|+||+|++.|+++|+..++.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCcc
Confidence 9999999999999999999997654
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=345.32 Aligned_cols=201 Identities=26% Similarity=0.439 Sum_probs=176.2
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~ 661 (1354)
.++++|++..|+. ++.+|+||||+|++||+++++||||||||||+++|+|+.+|++|+|.+.| ++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 4778999999973 24699999999999999999999999999999999999999999999987 499
Q ss_pred EEeCCCCC-CCCcHHHHHhcC-----CC--CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000680 662 YVSQTSWI-QSGSIRDNILYG-----KP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 662 yv~Q~~~~-~~~ti~eni~~g-----~~--~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1354)
|+||+|.+ ...|++||+.|- .+ .++++.+++++..+|.++. ..+..+||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 99999975 567999999873 22 2355777888877776522 25677899999999999999
Q ss_pred HhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCC-cEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~-~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
|.++|++++|||||+||||..++.+++.+.....+| +||+++||.++.+.. ||+|++|++|++++.|+.+++..
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999988777666666 799999999999887 89999999999999999988754
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=334.13 Aligned_cols=198 Identities=24% Similarity=0.427 Sum_probs=166.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|+++.|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4689999999642 24699999999999999999999999999999999999999999999876 3899
Q ss_pred EeCCCCCC-CCcHHHHHhcCC---CCC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWIQ-SGSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~~-~~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
++|++.++ +.|++||+.++. ... .++..++++.+++.+.+ .....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHHHHH
Confidence 99998776 679999998642 122 23445566666664333 245678999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
+.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEV-RKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999988765543 346899999999999876 899999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=340.59 Aligned_cols=205 Identities=29% Similarity=0.393 Sum_probs=170.7
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g--------- 658 (1354)
..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 46899999999963 3699999999999999999999999999999999999987 489998865
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQ 724 (1354)
.++|++|++.+++.|++|||.++.. .+. ++..+.++.+++.+.+. .....++.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcccCCHHH
Confidence 3899999998888999999988632 121 23344445555432221 11235678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 725 kqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
|||++||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++++.. +|++++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988765544 457899999999999866 8999999999999999999
Q ss_pred HHHhc
Q 000680 804 ELLLA 808 (1354)
Q Consensus 804 ~l~~~ 808 (1354)
++.++
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 98654
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=333.76 Aligned_cols=192 Identities=30% Similarity=0.426 Sum_probs=161.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
++++|++++|+. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999999974 3699999999999999999999999999999999999999999999876 38999
Q ss_pred eCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 664 SQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 664 ~Q~~~~~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
+|++.++ +.|++||+.++.. ... ++..+.++..++.+.+ ...+.+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL-----------DRKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHH-----------hCChhhCCHHHHHHHHHHHHHh
Confidence 9999876 5699999987521 222 2334445555554332 3566789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
.+|++++|||||++||+++.+.+.+.+..... +++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999998876655444 48999999999998876 8999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=338.86 Aligned_cols=203 Identities=29% Similarity=0.421 Sum_probs=169.1
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC-----CcEEEEcC-----------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG----------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~-----~G~i~~~g----------- 658 (1354)
++++|++++|+. .++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 689999999974 35899999999999999999999999999999999999998 99998865
Q ss_pred ----eEEEEeCCCCCCCCcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 ----SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ----~i~yv~Q~~~~~~~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.++|+||++.+++.|++||+.++.. .+. ++..++++..++.++++ .....++.+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 3899999998888999999987521 111 23344455555542221 1234667899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
|++||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999987755443 335899999999998875 899999999999999999988
Q ss_pred Hhc
Q 000680 806 LLA 808 (1354)
Q Consensus 806 ~~~ 808 (1354)
.++
T Consensus 231 ~~~ 233 (247)
T TIGR00972 231 FTN 233 (247)
T ss_pred HhC
Confidence 643
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=310.60 Aligned_cols=201 Identities=25% Similarity=0.344 Sum_probs=172.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
+++.+.+.+|++ ...+++|+||++++||+++|.|+||+||||+|+.|.+++.|++|+|.++| +||.
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 567888999975 34589999999999999999999999999999999999999999999987 5888
Q ss_pred EeCCCCC-CCCcHHHHHhcCCC-C------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWI-QSGSIRDNILYGKP-M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~-~~~ti~eni~~g~~-~------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
++-+.-+ ...|+||||.|... + -+.+..+..+..++.+-++ .+..++|-||||||++|||+
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHHH
Confidence 8865444 56799999986321 1 2456666777777766554 57778999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
++||++++||||+||||..+.+.+.+.+......|+++|+.||.++.++. ||+|+++++|+++..|+.+++.+.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999998777666666679999999999999985 999999999999999999998754
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=344.19 Aligned_cols=204 Identities=22% Similarity=0.350 Sum_probs=173.5
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCC---cEEEEcC-----------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS---GTVNLYG----------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~---G~i~~~g----------- 658 (1354)
..++++|+++.|+.. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 468999999999643 2469999999999999999999999999999999999999987 8998876
Q ss_pred --eEEEEeCCCC--CCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 --SIAYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 --~i~yv~Q~~~--~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
.+||++|+|. +++.|++||+.|+.. .+. ++..++++.+++.+.++ ....+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-----------SEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHH
Confidence 3899999984 568899999998632 222 23455666666654333 5567999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHH
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
++||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999998876655444 389999999999998779999999999999999999886
Q ss_pred hc
Q 000680 807 LA 808 (1354)
Q Consensus 807 ~~ 808 (1354)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 53
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=339.28 Aligned_cols=203 Identities=28% Similarity=0.397 Sum_probs=167.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4688999999742 4699999999999999999999999999999999999999999999876 389
Q ss_pred EEeCCCCCC-CCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000680 662 YVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 662 yv~Q~~~~~-~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1354)
|++|+|.++ ..|++||+.++.. .+. ++..+.++..++.. .....+++.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 999999876 4799999987532 221 22333344444332 012246678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
++.+|++++|||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. +|+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999998876665444 48999999999998765 899999999999999998887543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=342.84 Aligned_cols=204 Identities=25% Similarity=0.393 Sum_probs=172.9
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++++|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48899999999753334699999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCC--CCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 661 ~yv~Q~~~--~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|++|+|. +++.|+.|||.++.. ... ++++++++.+++....+ .++.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999983 667899999987521 222 23455566666643322 45678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999988766544443 8999999999999888999999999999999999998754
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=336.82 Aligned_cols=200 Identities=26% Similarity=0.417 Sum_probs=168.2
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------~ 659 (1354)
++++|++++|+. +++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 678999999963 4699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
++|++|++.++ ..|++||+.++. ..+. ++..++++..++.+. ...++.+||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAER-----------AHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHH-----------HhcChhhcCHHHHHHHHH
Confidence 89999998765 579999998753 1222 223344444444332 235667899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|||++.+|++++|||||++||+++.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999887655444468999999999999876 899999999999999999987653
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=342.17 Aligned_cols=204 Identities=25% Similarity=0.412 Sum_probs=172.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~ 659 (1354)
..++++|++++|+.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 6 ~~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 368999999999632 35699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEeCCC--CCCCCcHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 660 IAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 660 i~yv~Q~~--~~~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
++|++|+| .+++.|++||+.++.. ++.+ +..++++..++.+.++ .++.+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-----------KEPQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CCcccCCHHHHHHHHH
Confidence 89999998 4567899999987531 2322 2344555566654433 5567999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|||++.+|+++||||||++||+.+.+.+++.+.....+ ++|+|++||+++.+..||++++|++|++.+.|+.+++.+.
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999998766655444 5899999999998877999999999999999998887643
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=344.64 Aligned_cols=204 Identities=21% Similarity=0.349 Sum_probs=169.0
Q ss_pred EEEEeeEEEeCCCC--CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
++++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997432 14699999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEeCCC--CCCCCcHHHHHhcCCC---CCHHH----HHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MDKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ---~i~yv~Q~~--~~~~~ti~eni~~g~~---~~~~~----~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.|+|++|+| .+++.|++||+.++.. .+.+. .+++++..++..+ ....++.+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHHH
Confidence 289999997 5677899999987531 22222 2333444444321 123567899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
|++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999887665544458999999999999875 899999999999999999887
Q ss_pred Hhc
Q 000680 806 LLA 808 (1354)
Q Consensus 806 ~~~ 808 (1354)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 653
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=354.73 Aligned_cols=189 Identities=33% Similarity=0.469 Sum_probs=162.2
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------------eEEEEeCCCC
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------------SIAYVSQTSW 668 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------------~i~yv~Q~~~ 668 (1354)
..+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +++|++|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 4579999999999999999999999999999999999999999999876 3999999998
Q ss_pred CCC-CcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 669 IQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 669 ~~~-~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
+++ .|++||+.++.. .++ ++..++++..+|.+.. ...+.+|||||||||+||||++++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~-----------~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWA-----------DKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 875 799999998642 222 2344555555554332 245678999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
+|||||||+||+.+.+.+.+.+..... .++|+|++|||++++.+ +|+|++|++|++++.|+++++..++
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCc
Confidence 999999999999999999887766544 38999999999999755 8999999999999999999997653
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=349.33 Aligned_cols=208 Identities=24% Similarity=0.364 Sum_probs=172.4
Q ss_pred CCcEEEEeeEEEeCCCC----------CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---
Q 000680 592 DRSVKIQEGNFSWDPEL----------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~----------~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--- 658 (1354)
+.-++++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 34689999999996421 24689999999999999999999999999999999999999999998876
Q ss_pred -------------eEEEEeCCCC--C-CCCcHHHHHhcCC-----CCCHH----HHHHHHHHhccHHHHhcCCCCCcccc
Q 000680 659 -------------SIAYVSQTSW--I-QSGSIRDNILYGK-----PMDKA----RYDKAIKACALDKDINNFDHGDLTEI 713 (1354)
Q Consensus 659 -------------~i~yv~Q~~~--~-~~~ti~eni~~g~-----~~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~i 713 (1354)
+++||+|+|. + +..||.|||.++. ..+++ +..+.++..++.++ ..
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~~ 155 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------LI 155 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------Hh
Confidence 4999999983 4 4689999997531 13322 23344555555322 12
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEE
Q 000680 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVL 791 (1354)
Q Consensus 714 g~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l 791 (1354)
...+.+|||||||||+||||++.+|+++|+||||++||+.+.+.+.+.+..... .|.|+|+||||++.+.. ||+|++|
T Consensus 156 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl 235 (331)
T PRK15079 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235 (331)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 466789999999999999999999999999999999999999999876655443 48899999999999986 8999999
Q ss_pred eCCeEEEecChHHHHhcC
Q 000680 792 EGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 792 ~~G~i~~~g~~~~l~~~~ 809 (1354)
++|+|++.|+.+++.++.
T Consensus 236 ~~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 236 YLGHAVELGTYDEVYHNP 253 (331)
T ss_pred ECCEEEEEcCHHHHHcCC
Confidence 999999999999998654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=345.20 Aligned_cols=206 Identities=23% Similarity=0.375 Sum_probs=168.1
Q ss_pred CcEEEEeeEEEeCCCC--CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000680 593 RSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------ 658 (1354)
+.++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4689999999997432 13599999999999999999999999999999999999999999998765
Q ss_pred ------eEEEEeCCCC--CCCCcHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 ------SIAYVSQTSW--IQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 ------~i~yv~Q~~~--~~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
.++|++|+|. +++.|++||+.++.. ...+ +..+.++..++..+ ..++.+.+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~----------~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPED----------YVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhcCChhhCCHH
Confidence 3899999984 466799999988632 2221 12223333333111 123567899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999998876654433 48999999999998765 89999999999999999
Q ss_pred hHHHHhc
Q 000680 802 YQELLLA 808 (1354)
Q Consensus 802 ~~~l~~~ 808 (1354)
++++.+.
T Consensus 235 ~~~~~~~ 241 (289)
T PRK13645 235 PFEIFSN 241 (289)
T ss_pred HHHHhcC
Confidence 9887653
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=339.72 Aligned_cols=204 Identities=26% Similarity=0.408 Sum_probs=170.4
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
++.++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 356899999999963 4699999999999999999999999999999999999999999998765
Q ss_pred -------------eEEEEeCCCCCCC-CcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCC
Q 000680 659 -------------SIAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1354)
Q Consensus 659 -------------~i~yv~Q~~~~~~-~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~ 716 (1354)
.++|+||++.++. .|++||+.++. ..+. ++..+.++..++...+ .++.
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~ 149 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKY 149 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCC
Confidence 3899999998765 69999998642 1121 2233344444443221 1356
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.....+|+|+|+|||+++.+.. ||+|++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 78999999999999999999999999999999999999999987665544468999999999999986 89999999999
Q ss_pred EEEecChHHHHhc
Q 000680 796 ITQSGNYQELLLA 808 (1354)
Q Consensus 796 i~~~g~~~~l~~~ 808 (1354)
+++.|+++++.+.
T Consensus 230 i~~~~~~~~~~~~ 242 (257)
T PRK10619 230 IEEEGAPEQLFGN 242 (257)
T ss_pred EEEeCCHHHhhhC
Confidence 9999999987643
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=339.37 Aligned_cols=207 Identities=28% Similarity=0.410 Sum_probs=172.7
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC-------
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG------- 658 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g------- 658 (1354)
..+.++++|+++.|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 10 ~~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 10 APSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred CCceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 3456899999999963 369999999999999999999999999999999999986 5899998865
Q ss_pred --------eEEEEeCCCCCCCCcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 659 --------SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 659 --------~i~yv~Q~~~~~~~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
+++|++|++.+++.|++||+.++.. .+. ++.+++++..++..++. ...++++.+|||
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 159 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSG 159 (260)
T ss_pred cchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCH
Confidence 3899999998878999999987532 222 23445555555533222 223567889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++++.|+
T Consensus 160 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 238 (260)
T PRK10744 160 GQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGN 238 (260)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999987765544 457899999999999865 89999999999999999
Q ss_pred hHHHHhc
Q 000680 802 YQELLLA 808 (1354)
Q Consensus 802 ~~~l~~~ 808 (1354)
.+++...
T Consensus 239 ~~~~~~~ 245 (260)
T PRK10744 239 TDTIFTK 245 (260)
T ss_pred HHHHHhC
Confidence 9988654
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=330.26 Aligned_cols=192 Identities=28% Similarity=0.443 Sum_probs=161.5
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEeC
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------~i~yv~Q 665 (1354)
++++|+++.|+. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 468999999963 4699999999999999999999999999999999999999999999987 4999999
Q ss_pred CCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 000680 666 TSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1354)
Q Consensus 666 ~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1354)
++.++. .|++||+.+... .. +++..+.++..++...+ .++..+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHHHhcC
Confidence 987765 699999986421 11 22334445555554332 356678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999887665544568899999999999876 8999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=341.55 Aligned_cols=202 Identities=23% Similarity=0.315 Sum_probs=169.1
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
..++++|+++.|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 35899999999963 4689999999999999999999999999999999999999999998875
Q ss_pred --eEEEEeCCCCCCC-CcHHHHHhcCC----CCCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 --SIAYVSQTSWIQS-GSIRDNILYGK----PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 --~i~yv~Q~~~~~~-~ti~eni~~g~----~~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
.++|++|++.+++ .|++||+.++. ..+.+ +..+.++..++.+.. ..+..+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA-----------KLMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHH
Confidence 3899999998765 59999998642 12221 233344444443222 24567899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999998876655443 37899999999999876 899999999999999999998
Q ss_pred Hhc
Q 000680 806 LLA 808 (1354)
Q Consensus 806 ~~~ 808 (1354)
.+.
T Consensus 232 ~~~ 234 (269)
T PRK11831 232 QAN 234 (269)
T ss_pred hcC
Confidence 754
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=332.66 Aligned_cols=192 Identities=27% Similarity=0.413 Sum_probs=159.8
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 67899999996422 24699999999999999999999999999999999999999999998865
Q ss_pred --eEEEEeCCCCCC-CCcHHHHHhcCC---CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 659 --SIAYVSQTSWIQ-SGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 659 --~i~yv~Q~~~~~-~~ti~eni~~g~---~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
.++|++|++.++ +.|++||+.++. .++. ++..+.++.+++.+.+ ...+.+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI-----------NHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHH
Confidence 389999998776 569999998742 1222 2334445555554322 355678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEE
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1354)
+||||++.+|+++||||||++||+++.+.+.+.+..... .++|+|++||+++++..+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999998876654443 478999999999998889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=341.30 Aligned_cols=204 Identities=24% Similarity=0.376 Sum_probs=173.9
Q ss_pred cEEEEeeEEEeCCCC---CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000680 594 SVKIQEGNFSWDPEL---AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~---~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------ 658 (1354)
-++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 488999999997431 24699999999999999999999999999999999999999999999876
Q ss_pred --eEEEEeCCCC--CCCCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 --SIAYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 --~i~yv~Q~~~--~~~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
.++|++|+|. ++..|+.||+.|+.. .+ +++.+++++.++|.+.++ ....+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR-----------HAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHH
Confidence 3899999984 556799999998632 22 234556666777765443 4567899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHH
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999998876554433 489999999999998789999999999999999999986
Q ss_pred hc
Q 000680 807 LA 808 (1354)
Q Consensus 807 ~~ 808 (1354)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=333.01 Aligned_cols=201 Identities=22% Similarity=0.356 Sum_probs=166.5
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|+++.|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4889999999963 4699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEeCCCCCCC-CcHHHHHhcCCCC-CHHHH----HHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000680 660 IAYVSQTSWIQS-GSIRDNILYGKPM-DKARY----DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 660 i~yv~Q~~~~~~-~ti~eni~~g~~~-~~~~~----~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1354)
++|++|++.++. .|++||+.++... +.+.. .++++... .+.. ....++.+||||||||++||||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~---~l~~-------~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFP---RLHE-------RRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHH---HHHH-------HHhCchhhCCHHHHHHHHHHHH
Confidence 899999987765 6999999876421 21222 22222221 1111 1124677899999999999999
Q ss_pred HhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999887665544568999999999998765 89999999999999999999864
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=337.51 Aligned_cols=200 Identities=21% Similarity=0.339 Sum_probs=167.7
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 5899999999963 4699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEeCCCCCCC-CcHHHHHhcCCC-----------C-----C------HHHHHHHHHHhccHHHHhcCCCCCcccccCC
Q 000680 660 IAYVSQTSWIQS-GSIRDNILYGKP-----------M-----D------KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1354)
Q Consensus 660 i~yv~Q~~~~~~-~ti~eni~~g~~-----------~-----~------~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~ 716 (1354)
++|++|++.++. .|++||+.++.. + . .++..+.++..++.+ ..+.+
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-----------HANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-----------hhhCC
Confidence 789999998765 599999997521 0 0 012222233333322 23467
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCC
Q 000680 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGG 794 (1354)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1354)
+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 7899999999999999999999999999999999999999988766655444 7899999999999876 8999999999
Q ss_pred eEEEecChHHHHh
Q 000680 795 QITQSGNYQELLL 807 (1354)
Q Consensus 795 ~i~~~g~~~~l~~ 807 (1354)
++++.|+.+++..
T Consensus 231 ~i~~~~~~~~~~~ 243 (255)
T PRK11300 231 TPLANGTPEEIRN 243 (255)
T ss_pred eEEecCCHHHHhh
Confidence 9999999988754
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=354.76 Aligned_cols=188 Identities=27% Similarity=0.407 Sum_probs=160.7
Q ss_pred CcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEEEEeCCCCCC-CC
Q 000680 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQ-SG 672 (1354)
Q Consensus 611 ~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------------~i~yv~Q~~~~~-~~ 672 (1354)
++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| +++|++|++.++ +.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 479999999999999999999999999999999999999999999875 389999999876 56
Q ss_pred cHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 673 SIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 673 ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
|++||+.++.. ++. ++..++++.++|.+.++ .++.+|||||||||+||||++.+|+++||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~-----------~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH-----------SYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998632 222 23445556566544332 5567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 746 PFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
||++||+.+.+.+.+.+..... .++|+|++||+++++.. +|+|++|++|++++.|+++++....
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc
Confidence 9999999999998877665443 58999999999999865 8999999999999999999987653
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=339.57 Aligned_cols=203 Identities=22% Similarity=0.334 Sum_probs=170.3
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++++|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999743 24689999999999999999999999999999999999999999999987 38
Q ss_pred EEEeCCCC--CCCCcHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 661 AYVSQTSW--IQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 661 ~yv~Q~~~--~~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|++|+|. +++.|+++|+.++.. ...+ +..++++..++.+.. ..++.+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHH
Confidence 99999985 566799999988632 2222 233344444443222 256779999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||++.+|+++||||||++||+.+.+.+++.+..... +|+|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999998876655433 37899999999999878999999999999999999988654
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=337.07 Aligned_cols=199 Identities=26% Similarity=0.386 Sum_probs=169.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 689999999963 4699999999999999999999999999999999999999999999876 389
Q ss_pred EEeCCCCCCC-CcHHHHHhcCCC-----C---C---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 662 YVSQTSWIQS-GSIRDNILYGKP-----M---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 662 yv~Q~~~~~~-~ti~eni~~g~~-----~---~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
|++|++.++. .|+.||+.++.. + . .++..++++.+++.+.. ..++..||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLA-----------DRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHH-----------cCCcccCCHHHHHHHH
Confidence 9999987665 499999988631 1 1 22344555555554433 2567789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. +|++++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999887665544468999999999999876 89999999999999999988764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=338.00 Aligned_cols=201 Identities=27% Similarity=0.432 Sum_probs=167.5
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3789999999963 3699999999999999999999999999999999999999999997754
Q ss_pred ------eEEEEeCCCCCC-CCcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 ------SIAYVSQTSWIQ-SGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~-~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
.++|++|++.++ +.|++||+.++. ..+. ++..+.++..++... ...++.+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChH
Confidence 389999998776 479999997642 1222 123333443333221 23567899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+.
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999887655544468999999999999876 899999999999999999
Q ss_pred HHHHhc
Q 000680 803 QELLLA 808 (1354)
Q Consensus 803 ~~l~~~ 808 (1354)
+++.+.
T Consensus 229 ~~~~~~ 234 (250)
T PRK11264 229 KALFAD 234 (250)
T ss_pred HHHhcC
Confidence 988653
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=339.95 Aligned_cols=200 Identities=27% Similarity=0.371 Sum_probs=167.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------~ 659 (1354)
++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 678999999963 4699999999999999999999999999999999999999999998865 3
Q ss_pred EEEEeCCCC--CCCCcHHHHHhcCC---CCCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 660 IAYVSQTSW--IQSGSIRDNILYGK---PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 660 i~yv~Q~~~--~~~~ti~eni~~g~---~~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
++|++|++. ++..|+.||+.++. ..+.+ +..++++..++.... ..++.+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHH
Confidence 899999985 46678999998742 12222 233455555554322 24567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999887665544468999999999999865 899999999999999999887653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=328.71 Aligned_cols=190 Identities=26% Similarity=0.398 Sum_probs=160.7
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|+++.|+. .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 468999999964 36999999999999 9999999999999999999999999999999877 3899
Q ss_pred EeCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
++|++.++. .|++||+.+... .+ +++.++.++.+++.+..+ ..+.+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHHH
Confidence 999998765 599999986321 11 234455666666654332 45678999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
+++|+++||||||++||+.+.+++.+.+.... +++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELG-EDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887665443 46899999999999875 8999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=313.66 Aligned_cols=209 Identities=29% Similarity=0.436 Sum_probs=172.5
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
-++++|++-.|.. .++|+++||++++||+++++|+||+||||||++|.|..++.+|+|.++| .
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4678999999975 4699999999999999999999999999999999999999999999988 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCCCCCHH-HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGKPMDKA-RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~~~~~~-~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1354)
|+||||...+| +.||+||+..|....+. +..+. .+++-.+.+|.= ......++.+|||||||.+++||||+++
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~L-ker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPRL-KERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChhH-HHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 99999998876 67999999987432221 11110 022223333321 1123478999999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhh-hcCEEEEEeCCeEEEecChHHHHhcCc
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1354)
|++++||||+.+|-|...+.||+.+.....+ |-||++|.++..+.- -+||.+||++|+|+.+|+.+|+.+++.
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 9999999999999999999999877665544 679999999999865 589999999999999999999987643
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=332.74 Aligned_cols=198 Identities=29% Similarity=0.473 Sum_probs=165.7
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~i 660 (1354)
++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999973 4699999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCCCCC-CcHHHHHhcCCCC---C-HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 661 AYVSQTSWIQS-GSIRDNILYGKPM---D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 661 ~yv~Q~~~~~~-~ti~eni~~g~~~---~-~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
+|++|++.++. .|++||+.++... . .+.+.++++..+. +. ....++..+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~---l~-------~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV---LK-------EMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh---HH-------HHhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999998765 5999999875321 1 2233444444331 11 1123567899999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
++|+++||||||++||+.+.+++.+.+..... .++|+|++||+++++.. +|+++++++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999998876655444 37899999999999886 899999999999999998887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=335.25 Aligned_cols=199 Identities=29% Similarity=0.393 Sum_probs=169.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999973 4699999999999999999999999999999999999999999999877 289
Q ss_pred EEeCCCCC-CCCcHHHHHhcCCC-C--C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000680 662 YVSQTSWI-QSGSIRDNILYGKP-M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 662 yv~Q~~~~-~~~ti~eni~~g~~-~--~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1354)
|++|++.+ ++.|++||+.++.. . . +++.++.++..++.... ...+.+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-----------GRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHH
Confidence 99999876 67899999987532 1 1 22344555555554432 24667999999999999999
Q ss_pred Hh------cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 734 VY------NDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 734 l~------~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
++ .+|+++||||||++||+.+.+.+.+.+.... .+|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999887665544 468999999999999875 899999999999999999887
Q ss_pred Hh
Q 000680 806 LL 807 (1354)
Q Consensus 806 ~~ 807 (1354)
.+
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 64
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=338.05 Aligned_cols=206 Identities=23% Similarity=0.378 Sum_probs=171.8
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC-------
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG------- 658 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g------- 658 (1354)
.+..++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 16 ~~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 16 TEIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 4567999999999963 4699999999999999999999999999999999999975 899998876
Q ss_pred --------eEEEEeCCCCCCCCcHHHHHhcCCC---C--C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 659 --------SIAYVSQTSWIQSGSIRDNILYGKP---M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 659 --------~i~yv~Q~~~~~~~ti~eni~~g~~---~--~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
.++|++|+|.+++.|++||+.++.. . . .++..++++.+++.+++. +..++++.+||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 3899999998887899999987531 1 1 123344555555543221 12346778999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-hcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999987755443 347899999999999866 8999999999999999
Q ss_pred ChHHHHh
Q 000680 801 NYQELLL 807 (1354)
Q Consensus 801 ~~~~l~~ 807 (1354)
+.+++..
T Consensus 245 ~~~~~~~ 251 (267)
T PRK14235 245 DTEKMFT 251 (267)
T ss_pred CHHHHHh
Confidence 9998864
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=338.08 Aligned_cols=207 Identities=24% Similarity=0.361 Sum_probs=169.2
Q ss_pred cEEEEeeEEEeCCC------CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000680 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------- 658 (1354)
.++++|++++|+.. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999642 135799999999999999999999999999999999999999999998876
Q ss_pred -------eEEEEeCCCC--C-CCCcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCC
Q 000680 659 -------SIAYVSQTSW--I-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1354)
Q Consensus 659 -------~i~yv~Q~~~--~-~~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~L 720 (1354)
.++|++|+|. + ...|++||+.++. .++. ++..++++..++..+ ..+.++.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE----------DADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh----------hhhCChhhC
Confidence 3899999972 3 4579999996532 1222 233344444444211 123567899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEE
Q 000680 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1354)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1354)
|||||||++||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999988876655443 38999999999999975 89999999999999
Q ss_pred ecChHHHHhcCc
Q 000680 799 SGNYQELLLAGT 810 (1354)
Q Consensus 799 ~g~~~~l~~~~~ 810 (1354)
.|+.+++.....
T Consensus 232 ~g~~~~~~~~~~ 243 (265)
T TIGR02769 232 ECDVAQLLSFKH 243 (265)
T ss_pred ECCHHHHcCCCC
Confidence 999999876433
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=340.28 Aligned_cols=201 Identities=25% Similarity=0.446 Sum_probs=169.5
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------~ 659 (1354)
++++|++++|+. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 678999999963 23699999999999999999999999999999999999999999998876 2
Q ss_pred EEEEeCCC--CCCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 660 IAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 660 i~yv~Q~~--~~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
|+|++|+| .+++.|++||+.++.. ... ++..++++.+++.... ..++.+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-----------NKPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-----------cCChhhCCHHHHHHHHH
Confidence 89999997 4677899999987531 221 2344455555553221 24567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|||++.+|++++|||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999887665544458999999999999875 899999999999999999998653
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=333.27 Aligned_cols=200 Identities=21% Similarity=0.377 Sum_probs=167.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3788999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCCCCCC-CcHHHHHhcCCCC----CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 660 IAYVSQTSWIQS-GSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 660 i~yv~Q~~~~~~-~ti~eni~~g~~~----~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
++|++|++.++. .|++||+.+.... +. ++..+.++..++.. ....+..+||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-----------LRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-----------HhhcchhhCCHHHHHHHHH
Confidence 899999987665 6999999875321 21 12333333333322 2346678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
|||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999998876554444468999999999988765 89999999999999999998864
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=334.23 Aligned_cols=199 Identities=22% Similarity=0.345 Sum_probs=166.6
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
-++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 3789999999963 4699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEeCCCCCCC-CcHHHHHhcCCCCC---------------HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 660 IAYVSQTSWIQS-GSIRDNILYGKPMD---------------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 660 i~yv~Q~~~~~~-~ti~eni~~g~~~~---------------~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
++|++|++.+++ .|++||+.++...+ +++..+.++..++.+ ....+..+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHH
Confidence 899999998776 59999998753211 112233333333322 234667899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL-AGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCH
Confidence 999999999999999999999999999999999988765543 347899999999999876 899999999999999999
Q ss_pred HHHHh
Q 000680 803 QELLL 807 (1354)
Q Consensus 803 ~~l~~ 807 (1354)
+++..
T Consensus 227 ~~~~~ 231 (242)
T TIGR03411 227 DQVQA 231 (242)
T ss_pred HHHhc
Confidence 98764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=329.71 Aligned_cols=189 Identities=26% Similarity=0.409 Sum_probs=159.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
++++|+++.|+.. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999642 4699999999999999999999999999999999999999999998876
Q ss_pred eEEEEeCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ~i~yv~Q~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.++|++|++.++. .|++||+.++.. .. +++..+.++.+++.+.++ ....+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-----------ALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHH
Confidence 3899999997765 699999987531 12 123445556666654333 4556899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeE
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1354)
|||++.+|+++||||||++||+++.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999887665544568999999999999886 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=329.14 Aligned_cols=187 Identities=31% Similarity=0.494 Sum_probs=157.1
Q ss_pred EEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEE
Q 000680 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYV 663 (1354)
Q Consensus 597 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~yv 663 (1354)
++|+++.|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 2 ~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 67899999642 24699999999999999999999999999999999999999999999876 38999
Q ss_pred eCCCC--CCCCcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 664 SQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 664 ~Q~~~--~~~~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
+|++. +++.|++||+.++.. .+. ++..+.++..++.+.+ .+++.+||||||||++||||+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLR-----------DRSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHHHHHHH
Confidence 99983 567899999987522 222 2334455555554333 256678999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
+++|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999988766554458999999999999987 89999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=326.76 Aligned_cols=190 Identities=29% Similarity=0.441 Sum_probs=160.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
|+++|++++|+.. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 4689999999632 2 399999999999999999999999999999999999999999987 38999
Q ss_pred eCCCCCCC-CcHHHHHhcCCCC-------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 664 SQTSWIQS-GSIRDNILYGKPM-------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 664 ~Q~~~~~~-~ti~eni~~g~~~-------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
+|++.++. .|++||+.++... ++++..++++.+++.+..+ ....+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEK-----------RLPGELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHHHh
Confidence 99998765 5999999875321 1234556666666654443 345689999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
.+|+++||||||++||+++.+.+.+.+..... +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999998876655433 48999999999999876 8999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=336.62 Aligned_cols=204 Identities=25% Similarity=0.432 Sum_probs=169.6
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCC---ccC--CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE---IPK--ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~---~~~--~~G~i~~~g---------- 658 (1354)
.++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+ .+| ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5789999999964 4699999999999999999999999999999999996 454 589998865
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC---C-C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|+||++.+++.|++||+.++.. . + +++.+++++.+++.++++ +..++++.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 3899999998887899999987531 1 1 123344555555543222 123467889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999988766554 457899999999999865 89999999999999999999
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.++
T Consensus 232 ~~~~ 235 (250)
T PRK14245 232 IFTN 235 (250)
T ss_pred HhcC
Confidence 8754
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=337.54 Aligned_cols=206 Identities=22% Similarity=0.362 Sum_probs=170.4
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g-------- 658 (1354)
+..++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 11 ~~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 11 NIIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 346999999999964 469999999999999999999999999999999999987 6899998865
Q ss_pred -------eEEEEeCCCCCCCCcHHHHHhcCCCC---C---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -------SIAYVSQTSWIQSGSIRDNILYGKPM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -------~i~yv~Q~~~~~~~ti~eni~~g~~~---~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.++..|++||+.++... + +++..++++.+++...++ +....++.+||||||
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 160 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQ 160 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHH
Confidence 38999999988778999999986432 1 123344455444432221 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeC-----------
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG----------- 793 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~----------- 793 (1354)
||++||||++.+|+++||||||++||+.+.+++.+.+... .+++|+|++||+++.+.. ||++++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL-KKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 9999999999999999999999999999999988765443 457899999999998875 899999996
Q ss_pred CeEEEecChHHHHhc
Q 000680 794 GQITQSGNYQELLLA 808 (1354)
Q Consensus 794 G~i~~~g~~~~l~~~ 808 (1354)
|++++.|+.+++.+.
T Consensus 240 g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 240 GYLVEFNETKKIFNS 254 (269)
T ss_pred ceEEEeCCHHHHHhC
Confidence 678999999998754
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=338.92 Aligned_cols=202 Identities=27% Similarity=0.419 Sum_probs=171.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i 660 (1354)
.++++|++++|+.+ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37889999999632 3589999999999999999999999999999999999999999999876 38
Q ss_pred EEEeCCCC--CCCCcHHHHHhcCC---CCCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 661 AYVSQTSW--IQSGSIRDNILYGK---PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 661 ~yv~Q~~~--~~~~ti~eni~~g~---~~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
+|++|+|. +++.|++||+.++. ..+.+ ++++.++.+++.+.+. ..+..||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-----------RVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHHHHH
Confidence 99999973 56789999998753 23332 3455566666654433 45678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 999999999999999999999999998876655444 38999999999999865 899999999999999999998753
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=337.46 Aligned_cols=202 Identities=25% Similarity=0.355 Sum_probs=170.9
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
+..++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 9 ~~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (265)
T PRK10575 9 DTTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85 (265)
T ss_pred CceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhh
Confidence 346899999999963 3699999999999999999999999999999999999999999999887
Q ss_pred eEEEEeCCCCC-CCCcHHHHHhcCCC--------C---CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 SIAYVSQTSWI-QSGSIRDNILYGKP--------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ~i~yv~Q~~~~-~~~ti~eni~~g~~--------~---~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.++|++|++-+ +..|++||+.++.. . +.++..+.++.+++.+.++ .+..+|||||||
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~q 154 (265)
T PRK10575 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-----------RLVDSLSGGERQ 154 (265)
T ss_pred heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCCHHHHH
Confidence 38999999755 45699999987531 1 1234455666666654333 455689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
|++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 155 RAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999998876655443 37999999999999865 89999999999999999988
Q ss_pred HHh
Q 000680 805 LLL 807 (1354)
Q Consensus 805 l~~ 807 (1354)
+..
T Consensus 235 ~~~ 237 (265)
T PRK10575 235 LMR 237 (265)
T ss_pred hcC
Confidence 754
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=330.50 Aligned_cols=196 Identities=28% Similarity=0.379 Sum_probs=164.2
Q ss_pred CcEEEEeeEEEeCCCCC-CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 593 RSVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~-~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
..++++|++++|++... .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 35899999999975321 3589999999999999999999999999999999999999999998865
Q ss_pred ----eEEEEeCCCCCCC-CcHHHHHhcCC---CCC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 ----SIAYVSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ----~i~yv~Q~~~~~~-~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.++|++|++.++. .|++||+.++. ..+ +++..+.++.+++.+.++ .++.+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge~q 153 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-----------HLPAQLSGGEQQ 153 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHH
Confidence 3899999987765 69999998642 111 234555666666654433 455689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeEEEe
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1354)
|++||||++++|+++||||||++||+...+.+.+.+..... .|+|+|++||+++++..+|++++|++|++++.
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999998876655444 37899999999999878999999999999753
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=329.78 Aligned_cols=188 Identities=23% Similarity=0.421 Sum_probs=159.2
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
++++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 678999999952 24699999999999999999999999999999999999999999998865
Q ss_pred eEEEEeCCCCCC-CCcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 SIAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ~i~yv~Q~~~~~-~~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.++|++|+|.++ ..|++||+.++.. .+ +++.++.++..++.+.++ ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-----------AFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 389999999876 4799999987521 22 234455566666654333 4456899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
|||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999887766544468999999999999886 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=332.83 Aligned_cols=199 Identities=28% Similarity=0.394 Sum_probs=165.8
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 788999999963 4699999999999999999999999999999999999999999998865
Q ss_pred ---eEEEEeCCCCCCC-CcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 ---SIAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ---~i~yv~Q~~~~~~-~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.++|++|++.++. .|++||+.++. .... ++..+.++..++... +...+.+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPY-----------ADRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHH
Confidence 3899999997764 69999997421 1111 223334444444332 23566799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
|++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. +|++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999887655444468999999999999876 899999999999999998886
Q ss_pred Hh
Q 000680 806 LL 807 (1354)
Q Consensus 806 ~~ 807 (1354)
.+
T Consensus 229 ~~ 230 (242)
T PRK11124 229 TQ 230 (242)
T ss_pred cC
Confidence 43
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=337.17 Aligned_cols=203 Identities=22% Similarity=0.303 Sum_probs=171.9
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------ 658 (1354)
+...++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (265)
T PRK10253 4 SVARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80 (265)
T ss_pred cccEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHh
Confidence 3457999999999973 4699999999999999999999999999999999999999999999876
Q ss_pred -eEEEEeCCCCCC-CCcHHHHHhcCC-CC-------C---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -SIAYVSQTSWIQ-SGSIRDNILYGK-PM-------D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -~i~yv~Q~~~~~-~~ti~eni~~g~-~~-------~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.++ +.|++||+.++. +. . .++..++++..++.+.+ ..++.+||||||
T Consensus 81 ~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~ 149 (265)
T PRK10253 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA-----------DQSVDTLSGGQR 149 (265)
T ss_pred hheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----------cCCcccCChHHH
Confidence 389999998765 579999998752 11 1 12344555555554432 256789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
||++||||++.+|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 150 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (265)
T PRK10253 150 QRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPK 229 (265)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999876655444 48899999999998866 8999999999999999998
Q ss_pred HHHh
Q 000680 804 ELLL 807 (1354)
Q Consensus 804 ~l~~ 807 (1354)
++..
T Consensus 230 ~~~~ 233 (265)
T PRK10253 230 EIVT 233 (265)
T ss_pred HHhh
Confidence 8764
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=317.26 Aligned_cols=166 Identities=34% Similarity=0.591 Sum_probs=151.2
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4689999999753 23699999999999999999999999999999999999999999999987 2899
Q ss_pred EeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 000680 663 VSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1354)
Q Consensus 663 v~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ill 742 (1354)
++|++++++.|++||+ +.+||||||||++||||++++|++++
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998889999998 45799999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEec
Q 000680 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1354)
Q Consensus 743 LDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g 800 (1354)
|||||++||+++.+.+++.+... .+++|+|++||++++++.+|++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999988766544 4689999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=330.33 Aligned_cols=198 Identities=24% Similarity=0.341 Sum_probs=164.7
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------e
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~ 659 (1354)
..++++|+++.|+. .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 6 ~~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 6 PLLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred ceEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 46899999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCCCCCCCcHHHHHhcCCC-----CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 660 IAYVSQTSWIQSGSIRDNILYGKP-----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 660 i~yv~Q~~~~~~~ti~eni~~g~~-----~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
++|++|++.+++.|++||+.++.. .++++..+.++..++.+ +....++.+||||||||++||||+
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHH
Confidence 899999999888899999986421 12223344444444432 123467789999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEe-CCeEEEecChH
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLE-GGQITQSGNYQ 803 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~-~G~i~~~g~~~ 803 (1354)
+++|+++||||||++||+.+.+.+.+.+..... +|+|+|++||++++++.||++++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999988776554433 4889999999999998899999994 66667777764
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=336.72 Aligned_cols=205 Identities=26% Similarity=0.379 Sum_probs=169.7
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g--------- 658 (1354)
..++++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 36899999999963 4699999999999999999999999999999999999875 799998765
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. .+.+ +..++++.+++..++. ....+++.+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHH
Confidence 3899999998888999999987531 2222 2333444444432211 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL-KKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987765544 457999999999999866 89999999999999999998
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.++
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 8643
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=345.30 Aligned_cols=187 Identities=24% Similarity=0.382 Sum_probs=160.9
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEEEeCCCCCC-CCcHHH
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAYVSQTSWIQ-SGSIRD 676 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~yv~Q~~~~~-~~ti~e 676 (1354)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+||+||++.++ +.|++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 4689999999999999999999999999999999999999999999977 389999998775 469999
Q ss_pred HHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 000680 677 NILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1354)
Q Consensus 677 ni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~ 749 (1354)
|+.+... .. .++.+++++.+++.+.. ..+..+||||||||++||||++++|++++|||||++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAA-----------DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9986421 11 23455566666665433 256678999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 750 VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 750 lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999988665555568999999999999876 89999999999999999999864
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=343.07 Aligned_cols=198 Identities=24% Similarity=0.391 Sum_probs=169.4
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+||
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEE
Confidence 789999999963 4699999999999999999999999999999999999999999999977 3999
Q ss_pred EeCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH
Q 000680 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal 734 (1354)
+||++.++. .|++||+.+... .+ .++.+++++..++.+.. .++..+||||||||++||||+
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHHH
Confidence 999998764 599999975321 12 23344555555554332 356789999999999999999
Q ss_pred hcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 735 ~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
+++|++++|||||++||+.+.+++++.+... .+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-GKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999988766544 457999999999999876 89999999999999999999864
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=335.74 Aligned_cols=199 Identities=27% Similarity=0.405 Sum_probs=168.1
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 678999999963 4699999999999999999999999999999999999999999999877 389
Q ss_pred EEeCCCC-CCCCcHHHHHhcCCC-C------C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 662 YVSQTSW-IQSGSIRDNILYGKP-M------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 662 yv~Q~~~-~~~~ti~eni~~g~~-~------~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
|++|++. .+..|++||+.++.. . . .++..++++.+++.+.. ..++.+||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-----------DRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHH
Confidence 9999985 456899999987531 1 0 12334445555553322 3567789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||||++.+|+++||||||++||+...+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999887665544458899999999999965 89999999999999999988754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=335.03 Aligned_cols=200 Identities=27% Similarity=0.420 Sum_probs=167.8
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
|+++|+++.|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 468999999963 4699999999999999999999999999999999999999999998765
Q ss_pred ----------eEEEEeCCCCCC-CCcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCC
Q 000680 659 ----------SIAYVSQTSWIQ-SGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1354)
Q Consensus 659 ----------~i~yv~Q~~~~~-~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~ 719 (1354)
.++|++|++.++ ..|++||+.++. ..+. ++..+.++..++.+. .++.+.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK-----------ADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------hhcChhh
Confidence 389999998776 579999998752 1122 233444444444432 2356678
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEE
Q 000680 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1354)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1354)
||||||||++||||++++|+++||||||++||+.+.+.+++.+..... .++|+|++||+++.+.. +|++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999998876655444 38999999999999865 8999999999999
Q ss_pred EecChHHHHhc
Q 000680 798 QSGNYQELLLA 808 (1354)
Q Consensus 798 ~~g~~~~l~~~ 808 (1354)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999988654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=336.25 Aligned_cols=208 Identities=24% Similarity=0.362 Sum_probs=173.8
Q ss_pred CCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC------
Q 000680 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG------ 658 (1354)
Q Consensus 590 ~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g------ 658 (1354)
.....++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 16 ~~~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 16 EEEIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CCCeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 34457999999999963 469999999999999999999999999999999999986 5899998765
Q ss_pred ---------eEEEEeCCCCCCCCcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 659 ---------SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 659 ---------~i~yv~Q~~~~~~~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
.++|++|++.++..|++||+.++.. .++ ++..++++.+++.+++. +..++.+.+||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS 165 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLS 165 (267)
T ss_pred cCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCC
Confidence 3899999998888899999987532 121 23444555555543332 22457788999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
||||||++||||++++|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 244 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYD 244 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999988765544 457899999999999865 8999999999999999
Q ss_pred ChHHHHhc
Q 000680 801 NYQELLLA 808 (1354)
Q Consensus 801 ~~~~l~~~ 808 (1354)
+++++...
T Consensus 245 ~~~~~~~~ 252 (267)
T PRK14237 245 KTRNIFTN 252 (267)
T ss_pred CHHHHhcC
Confidence 99998653
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=335.22 Aligned_cols=205 Identities=27% Similarity=0.418 Sum_probs=168.9
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc--C---CCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~--~---~~G~i~~~g--------- 658 (1354)
..++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|
T Consensus 11 ~~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 11 EVYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred ceEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 35899999999963 369999999999999999999999999999999999987 3 589998765
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCCC----CHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM----DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~~----~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQ 724 (1354)
.++|++|++.+++.|++||+.++... +++ +..++++..++.+.+. +..+.++.+|||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq 160 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQ 160 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHH
Confidence 38999999988888999999875321 211 2233344444433221 12346778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 725 kqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
|||++||||++.+|+++||||||++||+++.+.+.+.+.. ..+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK-LKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH-HhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999988765544 3457899999999999875 8999999999999999999
Q ss_pred HHHhc
Q 000680 804 ELLLA 808 (1354)
Q Consensus 804 ~l~~~ 808 (1354)
++.++
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 98654
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=334.24 Aligned_cols=204 Identities=28% Similarity=0.380 Sum_probs=171.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g---------- 658 (1354)
-++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4789999999963 4699999999999999999999999999999999999875 799998865
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCCC----CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~~----~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.|+... +. ++..++++.+++.+++.. ..+.++.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 38999999998889999999875321 11 234456666665433321 23467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+.+.+++.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~-~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL-KKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999987755443 346899999999999876 89999999999999999999
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14270 233 IFLE 236 (251)
T ss_pred HhcC
Confidence 8654
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=333.59 Aligned_cols=204 Identities=28% Similarity=0.395 Sum_probs=169.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC-----CcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~-----~G~i~~~g---------- 658 (1354)
.++++|+++.|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5889999999963 46999999999999999999999999999999999999987 69998754
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCCC----CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~~----~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++... .+ ++..++++..++.+.++ +..+.++.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 39999999998888999999886321 11 12233333344432221 123577889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999987755443 467999999999999877 79999999999999999998
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 8654
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=326.77 Aligned_cols=198 Identities=27% Similarity=0.462 Sum_probs=168.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
++++|++++|+. .+ .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 678999999963 22 399999999999999999999999999999999999999999887 38999
Q ss_pred eCCCCCCC-CcHHHHHhcCCC----CC---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 664 SQTSWIQS-GSIRDNILYGKP----MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 664 ~Q~~~~~~-~ti~eni~~g~~----~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
+|++.++. .|++||+.++.. .. +++..++++..++.+.++ ....+||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-----------RLPGQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHh-----------CCcccCCHHHHHHHHHHHHHh
Confidence 99997765 599999987531 11 234555666666655443 455689999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
++|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. +|++++|++|++++.|+++++...
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999998876655443 48899999999999876 899999999999999999998754
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=336.91 Aligned_cols=206 Identities=23% Similarity=0.333 Sum_probs=168.7
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g-------- 658 (1354)
+..++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 19 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 19 EHILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred CceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 346899999999963 469999999999999999999999999999999999864 6899998765
Q ss_pred -------eEEEEeCCCCCCCCcHHHHHhcCCCC----CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 -------SIAYVSQTSWIQSGSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 -------~i~yv~Q~~~~~~~ti~eni~~g~~~----~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
.++|++|++.+++.|++||+.++... .. ++..+.++.+++..++. ...+.++.+||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 168 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGG 168 (268)
T ss_pred cHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHH
Confidence 38999999998888999999875321 11 12233333333321111 2235678899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
||||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 247 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL-KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQT 247 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999987755444 446899999999998865 899999999999999999
Q ss_pred HHHHhc
Q 000680 803 QELLLA 808 (1354)
Q Consensus 803 ~~l~~~ 808 (1354)
+++..+
T Consensus 248 ~~~~~~ 253 (268)
T PRK14248 248 EQIFTS 253 (268)
T ss_pred HHHHhC
Confidence 988654
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=342.76 Aligned_cols=207 Identities=20% Similarity=0.302 Sum_probs=171.7
Q ss_pred CcEEEEeeEEEeCCCC-------CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------
Q 000680 593 RSVKIQEGNFSWDPEL-------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~-------~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------- 658 (1354)
..++++|++++|+... ..++++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 3589999999996421 24689999999999999999999999999999999999999999998876
Q ss_pred ---------eEEEEeCCCC--C-CCCcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCC
Q 000680 659 ---------SIAYVSQTSW--I-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1354)
Q Consensus 659 ---------~i~yv~Q~~~--~-~~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~ 718 (1354)
+|+|++|+|. + +..|+.+|+..+. ...+ ++..+.++.++|.++. ....+.
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~p~ 153 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH----------YDRYPH 153 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHH----------hcCCCc
Confidence 4999999983 3 4569999986421 1222 3345555666654221 135678
Q ss_pred CCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeE
Q 000680 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 719 ~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1354)
+|||||||||+||||++.+|+++|+||||++||+.+.+++.+.+..... .|.|+|+||||++.+.. ||+|++|++|+|
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999887665444 48999999999999976 899999999999
Q ss_pred EEecChHHHHhcC
Q 000680 797 TQSGNYQELLLAG 809 (1354)
Q Consensus 797 ~~~g~~~~l~~~~ 809 (1354)
++.|+.+++.++.
T Consensus 234 ve~g~~~~~~~~p 246 (327)
T PRK11308 234 VEKGTKEQIFNNP 246 (327)
T ss_pred EEECCHHHHhcCC
Confidence 9999999998754
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=334.43 Aligned_cols=198 Identities=27% Similarity=0.435 Sum_probs=166.2
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEEcC------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG------------ 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~---~G~i~~~g------------ 658 (1354)
.++++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4789999999963 46999999999999999999999999999999999999986 49998776
Q ss_pred ------eEEEEeCCCCCCC-CcHHHHHhcCCC------------CC---HHHHHHHHHHhccHHHHhcCCCCCcccccCC
Q 000680 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP------------MD---KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~-~ti~eni~~g~~------------~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~ 716 (1354)
.++|++|++.++. .|++||+.++.. .. +++..++++..++.+.+ ..+
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA-----------HQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH-----------hCC
Confidence 2799999987655 699999987531 01 12334455555554322 356
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCC
Q 000680 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1354)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1354)
+.+||||||||++||||++.+|+++||||||++||+++.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 778999999999999999999999999999999999999998876655443 48999999999998765 8999999999
Q ss_pred eEEEecChHHH
Q 000680 795 QITQSGNYQEL 805 (1354)
Q Consensus 795 ~i~~~g~~~~l 805 (1354)
++++.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999999986
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=333.47 Aligned_cols=204 Identities=29% Similarity=0.381 Sum_probs=168.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g---------- 658 (1354)
.++++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4789999999964 3699999999999999999999999999999999999974 799998876
Q ss_pred ---eEEEEeCCCCC-CCCcHHHHHhcCCCC-----CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 ---SIAYVSQTSWI-QSGSIRDNILYGKPM-----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 ---~i~yv~Q~~~~-~~~ti~eni~~g~~~-----~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+ ++.|++||+.++... .. ++..+.++.+++.+.++ ......+.+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 38999999864 578999999875321 11 22334444444432111 123466789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++++|++++|||||++||+.+.+++.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL-KKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 9999999999999999999999999999999988766554 457999999999999865 89999999999999999998
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14247 232 VFTN 235 (250)
T ss_pred HHcC
Confidence 8654
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=327.69 Aligned_cols=196 Identities=21% Similarity=0.302 Sum_probs=168.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEeC
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------~i~yv~Q 665 (1354)
++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 468999999963 4699999999999999999999999999999999999999999999876 4899999
Q ss_pred CCCCC-CCcHHHHHhcCC---CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 000680 666 TSWIQ-SGSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1354)
Q Consensus 666 ~~~~~-~~ti~eni~~g~---~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1354)
++.++ +.|++||+.++. ..++++..+.++..++.+..+ .++.+||||||||++||||++.+|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 98765 479999997642 234556666777777654332 456789999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 742 lLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. ||++++|++|++++.|+.++
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999887665544468899999999999865 89999999999999998654
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=327.94 Aligned_cols=196 Identities=26% Similarity=0.403 Sum_probs=158.4
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
++++|+++.|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 67899999996421 12689999999999999999999999999999999999999999998865
Q ss_pred -eEEEEeCCCC--C-CCCcHHHHHhcCCC-----CCHHHHH----HHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -SIAYVSQTSW--I-QSGSIRDNILYGKP-----MDKARYD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -~i~yv~Q~~~--~-~~~ti~eni~~g~~-----~~~~~~~----~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++. + .+.|++||+.++.. .+++..+ +.++..++.. .....++.+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 3899999983 3 46799999976421 1111111 2223333311 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
||++||||++++|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999988766554444 8999999999999885 8999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=333.68 Aligned_cols=204 Identities=26% Similarity=0.398 Sum_probs=168.2
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cC---CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PK---ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~--~~---~~G~i~~~g---------- 658 (1354)
.++++|++++|+. +++++|+||++++||+++|+||||||||||+++|+|+. +| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 5889999999973 46999999999999999999999999999999999985 36 589998865
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC---C-CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~---~-~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. . ++ ++..++++.+++...+. +..++++.+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 3899999999888999999986521 1 11 12233444444432221 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL-KDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH-hhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999988765443 446899999999998765 89999999999999999999
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.++
T Consensus 234 ~~~~ 237 (252)
T PRK14239 234 MFMN 237 (252)
T ss_pred HHhC
Confidence 8654
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=333.07 Aligned_cols=204 Identities=27% Similarity=0.435 Sum_probs=169.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g---------- 658 (1354)
.++++|++|+|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4889999999963 469999999999999999999999999999999999987 4799998766
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC---C-CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~---~-~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. . ++ ++..++++.+++..+.. ...+.++.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhhCCHHHH
Confidence 3899999999888999999987532 1 11 23344445444432111 112467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++++.. +|+|++|++|++++.|+.++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL-KHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH-HcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987765544 456899999999999876 89999999999999999998
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14251 233 MFIA 236 (251)
T ss_pred HHhC
Confidence 8643
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=332.66 Aligned_cols=194 Identities=26% Similarity=0.411 Sum_probs=163.4
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEeCC
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQT 666 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------~i~yv~Q~ 666 (1354)
++++|+++.|+. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|+
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 678999999963 4699999999999999999999999999999999999999999999976 38999999
Q ss_pred CCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000680 667 SWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 667 ~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1354)
+.++. .|++||+.++.. .. .++..++++..++.+.+ ..++.+||||||||++||||++.+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAE-----------KRYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHHHHhcCC
Confidence 87765 699999987521 22 12345555555554332 2466789999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEe--CCeEEEecCh
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLE--GGQITQSGNY 802 (1354)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 802 (1354)
+++||||||++||+.+.+.+.+.+.... .+|+|+|++||+++.+.. ||++++|+ +|++++.++.
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999887665543 348999999999999876 89999998 5999987654
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=332.50 Aligned_cols=204 Identities=28% Similarity=0.423 Sum_probs=168.8
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g---------- 658 (1354)
.++++|+++.|+. .++++|+||+|++||+++|+||||||||||+++|+|..++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5889999999963 3699999999999999999999999999999999998763 699998875
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC---C-C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. . + +++..+.++.+++.+++. ...++++.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 3899999998877999999987632 1 1 123334444554433322 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987655443 457899999999998876 89999999999999999988
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 7643
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=327.06 Aligned_cols=190 Identities=24% Similarity=0.352 Sum_probs=159.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
++++|+++.|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 678999999942 24699999999999999999999999999999999999999999998876
Q ss_pred eEEEEeCCCCC-CCCcHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 SIAYVSQTSWI-QSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ~i~yv~Q~~~~-~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.++|++|+|.+ ++.|++||+.++.. .+.+ +.++.++..++.+.+ .....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA-----------KNFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCchhCCHHHHHHHHH
Confidence 38999999876 57899999987531 2222 233444444444332 24567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1354)
|||++++|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++++.. ||+|++|++|+++
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999887665544467899999999999987 7999999999986
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=346.03 Aligned_cols=198 Identities=28% Similarity=0.437 Sum_probs=168.7
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------- 658 (1354)
+++ |++++|+. . .+ |+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 455 78888863 2 23 99999999999999999999999999999999999999998765
Q ss_pred -eEEEEeCCCCCC-CCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 659 -~i~yv~Q~~~~~-~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
.++|++|++.++ +.|++||+.++.. .+.++.+++++.+++.+.++ .++.+|||||||||+||||++
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLD-----------RYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHHHHHH
Confidence 389999999876 5799999998743 23455666777776654433 456789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
.+|+++||||||++||+...+.+.+.+.....+ |+|+|+||||++.+.. ||++++|++|++++.|+++++..+.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 999999999999999999999988776554443 7899999999998766 8999999999999999999998664
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=332.80 Aligned_cols=204 Identities=27% Similarity=0.394 Sum_probs=170.8
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g---------- 658 (1354)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999963 368999999999999999999999999999999999976 4799998865
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCCC---C---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~~---~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
+++|++|++.+++.|++||+.++... . +++..++++.+++..++.. ..+.++.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 38999999988878999999876421 1 2234445566666544331 1346788999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEe---------CCeEE
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE---------GGQIT 797 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~---------~G~i~ 797 (1354)
++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|+ +|+++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~ 238 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL-KEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV 238 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 99999999999999999999999999999987655443 446899999999999876 89999998 89999
Q ss_pred EecChHHHHhc
Q 000680 798 QSGNYQELLLA 808 (1354)
Q Consensus 798 ~~g~~~~l~~~ 808 (1354)
+.|+.+++.+.
T Consensus 239 ~~~~~~~~~~~ 249 (264)
T PRK14243 239 EFDRTEKIFNS 249 (264)
T ss_pred EeCCHHHHHhC
Confidence 99999998754
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=331.29 Aligned_cols=199 Identities=22% Similarity=0.276 Sum_probs=162.1
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cCCCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~--~~~~G~i~~~g-------------- 658 (1354)
++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 468999999963 46999999999999999999999999999999999995 79999999876
Q ss_pred eEEEEeCCCCCCC-CcHHHHHhcCCC----------CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCC-CCCh
Q 000680 659 SIAYVSQTSWIQS-GSIRDNILYGKP----------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGL-NLSG 722 (1354)
Q Consensus 659 ~i~yv~Q~~~~~~-~ti~eni~~g~~----------~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~-~LSg 722 (1354)
.++|++|++.++. .|++||+.+... .+. ++..++++..++..++ ...+.. +|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF----------LNRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh----------cccccccCcCH
Confidence 2899999987754 599999976421 111 2233344444443221 113344 5999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh--cCEEEEEeCCeEEEec
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE--VDRILVLEGGQITQSG 800 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~g 800 (1354)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999887665554468999999999999876 6999999999999999
Q ss_pred ChHHHH
Q 000680 801 NYQELL 806 (1354)
Q Consensus 801 ~~~~l~ 806 (1354)
+++++.
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 887653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=325.78 Aligned_cols=188 Identities=29% Similarity=0.433 Sum_probs=158.2
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------~ 659 (1354)
++++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 468999999964 4699999999999999999999999999999999999999999998876 2
Q ss_pred EEEEeCCCCCCC-CcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 660 IAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 660 i~yv~Q~~~~~~-~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
++|++|++.++. .|++||+.++. ..+. ++..+.++.+++.+.+ ..+..+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKA-----------DAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hhCccccCHHHHHHHHH
Confidence 899999998764 79999998752 1222 2334444555554332 35667899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeE
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1354)
|||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999887665544468999999999999876 899999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=332.82 Aligned_cols=206 Identities=19% Similarity=0.311 Sum_probs=169.8
Q ss_pred cEEEEeeEEEeCCC------CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000680 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------- 658 (1354)
.++++|++++|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 58899999999631 124699999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEeCCCC--C-CCCcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 ----SIAYVSQTSW--I-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 ----~i~yv~Q~~~--~-~~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
.++|++|++. + ...|+.+|+.++. .... ++..++++.+++..+.. .....+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA----------SYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH----------hcCchhcCHH
Confidence 3899999984 3 3459999987532 1221 23445566666632221 2355789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999998876665444 38899999999999986 89999999999999999
Q ss_pred hHHHHhcC
Q 000680 802 YQELLLAG 809 (1354)
Q Consensus 802 ~~~l~~~~ 809 (1354)
++++.+..
T Consensus 234 ~~~~~~~~ 241 (267)
T PRK15112 234 TADVLASP 241 (267)
T ss_pred HHHHhcCC
Confidence 99987653
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=328.52 Aligned_cols=199 Identities=26% Similarity=0.398 Sum_probs=171.5
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCC
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~~ 671 (1354)
.++++|+++.|+. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|++.++.
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 4789999999973 4699999999999999999999999999999999999999999999987 5999999986643
Q ss_pred ---CcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000680 672 ---GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1354)
Q Consensus 672 ---~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1354)
.|+++|+.+......++..++++.+++.+.++ .+..+||||||||++||||++.+|+++||||||+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-----------APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred ccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 48999987654445566777788887765443 4567899999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 749 AVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 749 ~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
+||+.+.+.+++.+.....+ ++|+|++||+++++.. +|+|++|++ ++++.|+++++.+
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999988766554444 7899999999999865 899999965 7999999998864
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=310.04 Aligned_cols=161 Identities=26% Similarity=0.441 Sum_probs=145.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCCC
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~~~ 672 (1354)
|+++|++++|+.+ +++|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| +++|++|++.+++.
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 4689999999642 4699999999999999999999999999999999999999999999987 79999999998889
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCH
Q 000680 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1354)
Q Consensus 673 ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~ 752 (1354)
|++||+.++ ++.+||||||||++||||++++|++++|||||++||+
T Consensus 79 tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 79 TLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred cHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 999999864 2457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCC
Q 000680 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1354)
Q Consensus 753 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 794 (1354)
++.+.+.+.+.. . ++|+|++||+.+....||++++|++|
T Consensus 125 ~~~~~l~~~l~~-~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 125 ESEDRLYQLLKE-L--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHHHHH-h--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 999998775543 2 58999999999887779999999876
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=342.48 Aligned_cols=208 Identities=20% Similarity=0.349 Sum_probs=168.9
Q ss_pred cEEEEeeEEEeCCCCC-CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc----CCCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~-~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~----~~~G~i~~~g---------- 658 (1354)
-++++|++++|+.... ..+|+||||+|++||+++|+|+||||||||+++|+|+++ +++|+|.++|
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3789999999975322 368999999999999999999999999999999999997 4899999877
Q ss_pred -------eEEEEeCCCC---CCCCcHHHHHhcC----CCCC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCC
Q 000680 659 -------SIAYVSQTSW---IQSGSIRDNILYG----KPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1354)
Q Consensus 659 -------~i~yv~Q~~~---~~~~ti~eni~~g----~~~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~L 720 (1354)
.|+|++|+|. .+..|+.+++... .... +++..+.++..+|.+. ....+..+.+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhC
Confidence 2899999984 2446887766432 1112 2234445555555321 11234678899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEE
Q 000680 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1354)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1354)
||||||||+||||++.+|+++|+||||++||+.+.+.+.+.+..... .|.|+|+||||++.+.. ||+|++|++|+|++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999887665543 48999999999999865 89999999999999
Q ss_pred ecChHHHHhcC
Q 000680 799 SGNYQELLLAG 809 (1354)
Q Consensus 799 ~g~~~~l~~~~ 809 (1354)
.|+.+++.++.
T Consensus 235 ~g~~~~~~~~p 245 (326)
T PRK11022 235 TGKAHDIFRAP 245 (326)
T ss_pred ECCHHHHhhCC
Confidence 99999998654
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=333.89 Aligned_cols=205 Identities=24% Similarity=0.374 Sum_probs=168.7
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g--------- 658 (1354)
..++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 23 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 23 VVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred eEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 36999999999973 368999999999999999999999999999999999987 6999998866
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCC---C-CHHH----HHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-DKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~---~-~~~~----~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQ 724 (1354)
.++|++|++.++..|++||+.++.. . +++. ..+.++..++..++. ...++++.+|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHH
Confidence 3899999998888899999987531 1 1111 122233332222222 12356788999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 725 kqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
|||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++++.. ||++++|++|++++.|+++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL-KKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH-HcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988755443 447899999999999876 8999999999999999999
Q ss_pred HHHhc
Q 000680 804 ELLLA 808 (1354)
Q Consensus 804 ~l~~~ 808 (1354)
++..+
T Consensus 252 ~~~~~ 256 (271)
T PRK14238 252 KIFSN 256 (271)
T ss_pred HHHcC
Confidence 88654
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=313.03 Aligned_cols=160 Identities=38% Similarity=0.598 Sum_probs=146.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4689999999743 24699999999999999999999999999999999999999999999876 489
Q ss_pred EEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 000680 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1354)
Q Consensus 662 yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1354)
|++|++++++.|++||+ ||||||||++||||++++|+++
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998888999998 9999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeE
Q 000680 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1354)
Q Consensus 742 lLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1354)
||||||++||+++.+.+.+.+.....+|+|+|++||+++.+..||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999987665544568999999999999878999999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=333.61 Aligned_cols=207 Identities=24% Similarity=0.394 Sum_probs=171.4
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC-------
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG------- 658 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g------- 658 (1354)
....++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 22 ~~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 22 EQTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CCcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 3456999999999963 369999999999999999999999999999999999987 4899998765
Q ss_pred --------eEEEEeCCCCCCCCcHHHHHhcCCC---C-C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 659 --------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 659 --------~i~yv~Q~~~~~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
.++|++|++.+++.|++||+.++.. . . +++..++++..++.+++. +..++++.+|||
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 171 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSG 171 (272)
T ss_pred cCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCH
Confidence 4899999998887899999987522 1 1 122344445445543322 234577889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|||||++||||++++|++++|||||++||+.+.+.+.+.+.... +++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 172 Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-SKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999998877655443 47899999999999865 89999999999999999
Q ss_pred hHHHHhc
Q 000680 802 YQELLLA 808 (1354)
Q Consensus 802 ~~~l~~~ 808 (1354)
++++.+.
T Consensus 251 ~~~~~~~ 257 (272)
T PRK14236 251 TDTLFTS 257 (272)
T ss_pred HHHHhcC
Confidence 9987643
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=326.95 Aligned_cols=199 Identities=33% Similarity=0.441 Sum_probs=167.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
++++|++++|+. +++|+|+||++.+||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEE
Confidence 468999999974 3699999999999999999999999999999999999999999998875 48999
Q ss_pred eCCCCCCC-CcHHHHHhcCCC---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 664 SQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 664 ~Q~~~~~~-~ti~eni~~g~~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
||+|.++. .|++||+.++.. .+. ++..++++..++.+.. .....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLG-----------DRYPNQLSGGQRQRVALARALA 146 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCChhhCCHHHHHHHHHHHHHh
Confidence 99998775 599999987642 121 2233444444443322 2456789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
++|++++||||+++||+++.+.+.+.+.....+ ++|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999988766554444 7999999999999876 89999999999999999998864
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=331.28 Aligned_cols=204 Identities=26% Similarity=0.369 Sum_probs=167.3
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g---------- 658 (1354)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4789999999963 4699999999999999999999999999999999999987 499998865
Q ss_pred -----eEEEEeCCCCCCC-CcHHHHHhcCCC---C--CHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP---M--DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~-~ti~eni~~g~~---~--~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
.++|++|++.++. .|++||+.++.. . ..+ +..++++..++..++. .....++.+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 3899999998765 599999987531 1 121 2233333333322221 1234677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
||||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999988766544 346899999999999875 899999999999999999
Q ss_pred HHHHhc
Q 000680 803 QELLLA 808 (1354)
Q Consensus 803 ~~l~~~ 808 (1354)
+++.+.
T Consensus 233 ~~~~~~ 238 (253)
T PRK14267 233 RKVFEN 238 (253)
T ss_pred HHHHhC
Confidence 988654
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=331.67 Aligned_cols=203 Identities=27% Similarity=0.404 Sum_probs=166.7
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC-----------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG----------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g----------- 658 (1354)
-+++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468899999963 469999999999999999999999999999999999986 4799998865
Q ss_pred ----eEEEEeCCCCCCCCcHHHHHhcCCC---C--CHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 ----SIAYVSQTSWIQSGSIRDNILYGKP---M--DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 ----~i~yv~Q~~~~~~~ti~eni~~g~~---~--~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. . +.+ +..++++..++.+++. +.++.++.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 3899999998888899999987521 1 111 2233444444432211 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++++.. ||++++|++|++++.|+.++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL-KKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999887655443 458999999999999876 89999999999999999988
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.+.
T Consensus 235 ~~~~ 238 (251)
T PRK14244 235 IFKN 238 (251)
T ss_pred HhcC
Confidence 8654
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=330.39 Aligned_cols=204 Identities=26% Similarity=0.381 Sum_probs=168.2
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g---------- 658 (1354)
.++++|+++.|++ .++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4789999999963 4689999999999999999999999999999999999874 899998865
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC---C-CHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~---~-~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.++..|++||+.++.. . .++ +.++.++..++..+++ +..++++.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 3899999998888999999987521 1 111 2233344444433221 123567889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++++|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++++.|+.++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEEL-SENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999987665544 457899999999998765 89999999999999999998
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14262 232 IVER 235 (250)
T ss_pred HHhC
Confidence 8653
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=329.09 Aligned_cols=205 Identities=24% Similarity=0.369 Sum_probs=169.2
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc--C---CCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~--~---~~G~i~~~g--------- 658 (1354)
+.++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 46899999999973 469999999999999999999999999999999999986 4 689998866
Q ss_pred ------eEEEEeCCCCCCC-CcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~-~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
.++|++|++.++. .|++||+.++.. .+. ++..+.++.+++...+.. ..+..+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 2899999998766 699999986421 122 233445555555432221 123567899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL-KEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-HhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999987755443 456899999999999865 899999999999999999
Q ss_pred HHHHhc
Q 000680 803 QELLLA 808 (1354)
Q Consensus 803 ~~l~~~ 808 (1354)
+++...
T Consensus 232 ~~~~~~ 237 (252)
T PRK14256 232 KKIFTT 237 (252)
T ss_pred HHHHhC
Confidence 988654
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=328.88 Aligned_cols=203 Identities=25% Similarity=0.381 Sum_probs=168.2
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g---------- 658 (1354)
.++++|+++.|+. +++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4789999999963 4699999999999999999999999999999999999986 599998865
Q ss_pred ----eEEEEeCCCCCCCCcHHHHHhcCCC---CC-H----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 ----SIAYVSQTSWIQSGSIRDNILYGKP---MD-K----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ----~i~yv~Q~~~~~~~ti~eni~~g~~---~~-~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.++|++|++.+++.|++||+.++.. .. + ++..+.++..++.+++. ....+++.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 3899999998888999999987532 11 1 12233444444443332 2234677899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
||+||||++.+|+++||||||++||+++.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL-KKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999987755443 446899999999999876 899999999999999998887
Q ss_pred Hh
Q 000680 806 LL 807 (1354)
Q Consensus 806 ~~ 807 (1354)
..
T Consensus 232 ~~ 233 (249)
T PRK14253 232 FS 233 (249)
T ss_pred Hc
Confidence 54
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=320.41 Aligned_cols=190 Identities=25% Similarity=0.419 Sum_probs=161.1
Q ss_pred EEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEEe
Q 000680 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVS 664 (1354)
Q Consensus 596 ~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv~ 664 (1354)
+++|+++.|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++
T Consensus 2 ~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (213)
T TIGR01277 2 ALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLF 76 (213)
T ss_pred eEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEe
Confidence 68899999962 46799999999999999999999999999999999999999999876 389999
Q ss_pred CCCCCCC-CcHHHHHhcCC-C-C-----CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 000680 665 QTSWIQS-GSIRDNILYGK-P-M-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1354)
Q Consensus 665 Q~~~~~~-~ti~eni~~g~-~-~-----~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~ 736 (1354)
|+|.++. .|++||+.++. + . ++++..++++..++.+..+ ....+||||||||++||||++.
T Consensus 77 q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLD-----------RLPEQLSGGQRQRVALARCLVR 145 (213)
T ss_pred ccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhh-----------CCcccCCHHHHHHHHHHHHHhc
Confidence 9998765 69999998642 1 1 1234555666666654433 4456899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 737 DADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 737 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
+|++++|||||++||+.+.+.+.+.+..... .++|+|++||+++++.. +|++++|++|++++.|.
T Consensus 146 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 146 PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999998876655444 37899999999999875 89999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=330.16 Aligned_cols=206 Identities=21% Similarity=0.295 Sum_probs=165.5
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
.++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 5899999999964 4699999999999999999999999999999999999999999998765
Q ss_pred -------eEEEEeCCCC--C-CCCcHHHHHhcCC----CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHH
Q 000680 659 -------SIAYVSQTSW--I-QSGSIRDNILYGK----PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1354)
Q Consensus 659 -------~i~yv~Q~~~--~-~~~ti~eni~~g~----~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQ 724 (1354)
.++|++|++. + .+.|+.||+.+.. ..+....++ ...+.++.++.++ +..++++.+|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~-~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEIDA-ARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCCh-hHHhCCCccCCHHH
Confidence 2899999984 2 3468999986421 111111111 0112233333221 23457788999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 725 kqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
|||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++++.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999998876654433 38899999999999985 899999999999999999
Q ss_pred HHHHhc
Q 000680 803 QELLLA 808 (1354)
Q Consensus 803 ~~l~~~ 808 (1354)
+++..+
T Consensus 237 ~~~~~~ 242 (258)
T PRK11701 237 DQVLDD 242 (258)
T ss_pred HHHhcC
Confidence 988644
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=305.87 Aligned_cols=208 Identities=22% Similarity=0.355 Sum_probs=169.6
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.+..+|...+|.. +++.+|+||+|++||+|++.||||+||||.+.++.|+.+|++|+|.+++ .
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 4567788888874 5699999999999999999999999999999999999999999999987 3
Q ss_pred EEEEeCCCCCCC-CcHHHHHhcCCCCCH---HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 660 IAYVSQTSWIQS-GSIRDNILYGKPMDK---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 660 i~yv~Q~~~~~~-~ti~eni~~g~~~~~---~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
|||+||+|.+|. .||+|||..-.++.+ +.-++..+.-+|-+++.. . ..-..++.+||||||+|+.|||||.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i---~--hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHI---T--HLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhch---H--HHhcCcccccccchHHHHHHHHHHh
Confidence 999999999985 599999986543321 211222222233333321 1 1113778999999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcch-hhhcCEEEEEeCCeEEEecChHHHHhcC
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
.+|+.+||||||+++||.....|-+.+.....+|-.|+++-|++.+ +.-|||.+++.+|+|..+|+++|+.+++
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 9999999999999999999999865554555678899999999865 6779999999999999999999998654
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=326.44 Aligned_cols=200 Identities=30% Similarity=0.408 Sum_probs=169.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
+.++|++++|+. +++++|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEE
Confidence 468999999974 3699999999999999999999999999999999999999999999876 48999
Q ss_pred eCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 664 SQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 664 ~Q~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
+|++..+. .|++||+.++.. .+ ++++.++++..++.+.++ ....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~laral~ 146 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYAN-----------RKPSQLSGGQQQRVAIARALV 146 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHHh
Confidence 99998774 599999986521 12 234445555555544333 455789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++++.. ||++++|++|++.+.|+.+++...
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999999998876654443 38999999999999876 899999999999999998887643
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=329.05 Aligned_cols=204 Identities=25% Similarity=0.345 Sum_probs=168.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g---------- 658 (1354)
.|+++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+.++ ++|+|.++|
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5899999999963 4699999999999999999999999999999999998753 489998765
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCCC----CHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~~----~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++... +.. +..++++..++.+++. +..++++.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHH
Confidence 38999999988888999999986321 111 2233344444433222 234577889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. +|++++|++|++++.|+.++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~-~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL-KKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 9999999999999999999999999999999987655443 346899999999999875 89999999999999999998
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.+.
T Consensus 235 ~~~~ 238 (253)
T PRK14261 235 IFEN 238 (253)
T ss_pred HHhC
Confidence 8643
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=340.93 Aligned_cols=208 Identities=19% Similarity=0.289 Sum_probs=169.4
Q ss_pred cEEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc----CCCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~----~~~G~i~~~g---------- 658 (1354)
.++++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+.+ +++|+|.++|
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 478999999996432 2469999999999999999999999999999999999986 5899999876
Q ss_pred -------eEEEEeCCCCC---CCCcHHHHHhcCC---CC------C----HHHHHHHHHHhccHHHHhcCCCCCcccccC
Q 000680 659 -------SIAYVSQTSWI---QSGSIRDNILYGK---PM------D----KARYDKAIKACALDKDINNFDHGDLTEIGQ 715 (1354)
Q Consensus 659 -------~i~yv~Q~~~~---~~~ti~eni~~g~---~~------~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~ 715 (1354)
.|+|++|+|.. +..||.+|+.... .. + .++..+.++..+|.+.. ....+
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhC
Confidence 39999999852 4569999986421 00 1 12344455555553211 11235
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeC
Q 000680 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEG 793 (1354)
Q Consensus 716 ~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~ 793 (1354)
.+.+|||||||||+||||++.+|+++|+||||++||+.+.+++.+.+..... .|.|+|+||||++.+.. ||+|++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 6789999999999999999999999999999999999999999877665444 48999999999999976 899999999
Q ss_pred CeEEEecChHHHHhcC
Q 000680 794 GQITQSGNYQELLLAG 809 (1354)
Q Consensus 794 G~i~~~g~~~~l~~~~ 809 (1354)
|+|++.|+.+++.++.
T Consensus 235 G~ive~g~~~~i~~~p 250 (330)
T PRK15093 235 GQTVETAPSKELVTTP 250 (330)
T ss_pred CEEEEECCHHHHHhCC
Confidence 9999999999987653
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=322.29 Aligned_cols=437 Identities=18% Similarity=0.263 Sum_probs=303.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC-----CCHHHHHHHHHhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHH
Q 000680 339 FFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKK-----HSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVL 412 (1354)
Q Consensus 339 ~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~-----~~~G~ivNlms~D~~~i~~~~~-~~~~~w~~plqi~~~~~~L 412 (1354)
.|..+++.++.|..|+.....|-|.-...-+-. +..-..=..++.|+..+.+... ....+....++++.-..+|
T Consensus 107 ~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iL 186 (604)
T COG4178 107 TWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGIL 186 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999999999988755322111 1111233578888887766433 2333344445555555567
Q ss_pred HHHHhHHH---------HHHHH--HHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHhhHHHHHHhchHH
Q 000680 413 FGVVGLGA---------LPGLV--LFLICGLLNVPFAKILQ----KCQS-EFMIAQDERLRSTSEILNNMKIIKLQSWEE 476 (1354)
Q Consensus 413 ~~~lG~~~---------l~gl~--v~~i~~~l~~~~~~~~~----~~q~-~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~ 476 (1354)
|...|.-+ +.|.. ++++.+++...++-++. +... +....-|-|-.++ .+..+...|-+|.-|+
T Consensus 187 w~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lv-rv~enaE~IAly~GE~ 265 (604)
T COG4178 187 WSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLV-RVRENAEAIALYRGEK 265 (604)
T ss_pred HHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHH-HHHhhHHHHHHhcCcH
Confidence 75555221 22222 12223333333332222 2111 1222234455443 4667888999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Q 000680 477 KFKSLIESRREKEFKWLSEAQL----RKAYGTVIYWMS---PTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPV 549 (1354)
Q Consensus 477 ~f~~~i~~~R~~El~~l~~~~~----~~~~~~~~~~~~---p~~v~~~~f~~~~l~~~~~Lt~~~~Ft~l~lf~~l~~pl 549 (1354)
.-.+++++.=..=++..++... +..++....+++ |.++..-- ++. +.++-+...++-..|+.+...+
T Consensus 266 ~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~-----~f~-g~i~~G~lmqa~~aF~~v~ssl 339 (604)
T COG4178 266 VERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPR-----YFS-GQITFGGLMQAVGAFGQVHSSL 339 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHh-----hhc-CcChHHHHHHHHHHHHHHHHHH
Confidence 7666554432222222222111 111111112222 22222111 223 6899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC---CCcch--h--hhc--cccCCCCcEEEEeeEEEeCCCCCCCcceeeeEEe
Q 000680 550 RMIPEALSIMIQVKVSFDRINAFLLDHE---LNNDD--V--RRI--SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620 (1354)
Q Consensus 550 ~~lp~~i~~~~~a~vS~~Ri~~fL~~~e---~~~~~--~--~~~--~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i 620 (1354)
+.+-+....+.+=+.++.|+.+|-.+=| .+... . .+. .... +..|+++|++..-+.. .+.+++.|+++
T Consensus 340 swfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~nl~l~~p~~--~~ll~~l~~~v 416 (604)
T COG4178 340 SWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNA-DHGITLENLSLRTPDG--QTLLSELNFEV 416 (604)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccc-cceeEEeeeeEECCCC--Ceeeccceeee
Confidence 9999999999999999999999974322 11100 0 000 0111 5789999999988764 47899999999
Q ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCCCcHHHHHhcCCC---CCHHHHHHHHHH
Q 000680 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGKP---MDKARYDKAIKA 695 (1354)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~~~ti~eni~~g~~---~~~~~~~~~~~~ 695 (1354)
++||.+.|.|+||||||||+++|.|+.|--+|+|.... .+-|+||.|.++.+|.||-|++... ++++.+.+++.+
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~ 496 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHK 496 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999874 4899999999999999999999753 678899999999
Q ss_pred hccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEE
Q 000680 696 CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775 (1354)
Q Consensus 696 ~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilv 775 (1354)
|+|.+-.+++.+-+. --..||||||||+++||.++++|++++|||.|||||+.++..+++.+ +..+.+.|+|-|
T Consensus 497 vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l-~~~lp~~tvISV 570 (604)
T COG4178 497 VGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLL-KEELPDATVISV 570 (604)
T ss_pred cCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHH-HhhCCCCEEEEe
Confidence 999998888765443 34579999999999999999999999999999999999999998754 556688999999
Q ss_pred cCCcchhhhcCEEEEE
Q 000680 776 THQVEFLSEVDRILVL 791 (1354)
Q Consensus 776 tH~~~~l~~~d~i~~l 791 (1354)
.|+.......++.+-+
T Consensus 571 ~Hr~tl~~~h~~~l~l 586 (604)
T COG4178 571 GHRPTLWNFHSRQLEL 586 (604)
T ss_pred ccchhhHHHHhhheee
Confidence 9998877766665544
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=324.54 Aligned_cols=199 Identities=31% Similarity=0.454 Sum_probs=168.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv 663 (1354)
++++|+++.|+. ++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEE
Confidence 468899999963 279999999999999999999999999999999999999999999987 48999
Q ss_pred eCCCCCC-CCcHHHHHhcCCCC---C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 664 SQTSWIQ-SGSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 664 ~Q~~~~~-~~ti~eni~~g~~~---~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
+|++.++ ..|++||+.++... + .++..+.++.+++.+.++ +++.+||||||||++||||++
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~ 145 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-----------RKPETLSGGEQQRVAIARALV 145 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-----------cCcccCCHHHHHHHHHHHHHH
Confidence 9998776 57999999875321 1 123345566666654443 456789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
++|++++|||||++||+.+.+++.+.+..... +++|+|++||+++++.. +|++++|++|++++.|+++++.+.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999999999998876655433 38999999999999876 899999999999999999887654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=326.94 Aligned_cols=209 Identities=21% Similarity=0.289 Sum_probs=171.8
Q ss_pred CcEEEEeeEEEeCCC-----------------CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Q 000680 593 RSVKIQEGNFSWDPE-----------------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~-----------------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~ 655 (1354)
..|+++|++.+|... ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 457788888777642 134589999999999999999999999999999999999999999999
Q ss_pred EcCeEEEEeCCCCCC-CCcHHHHHhcCC---CCCHHHHH----HHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 656 LYGSIAYVSQTSWIQ-SGSIRDNILYGK---PMDKARYD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 656 ~~g~i~yv~Q~~~~~-~~ti~eni~~g~---~~~~~~~~----~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
++|.++|++|++.+. ..|++||+.++. .++.+... ++++..++.+. +...+.+||||||||
T Consensus 83 ~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qr 151 (264)
T PRK13546 83 RNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEF-----------IYQPVKKYSSGMRAK 151 (264)
T ss_pred ECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCCcccCCHHHHHH
Confidence 999999999998765 569999997642 23333222 23333333322 235678999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHH
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
++||||++++|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 v~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (264)
T PRK13546 152 LGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231 (264)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999887665544568999999999999876 8999999999999999999988
Q ss_pred hcCchH
Q 000680 807 LAGTAF 812 (1354)
Q Consensus 807 ~~~~~~ 812 (1354)
.....+
T Consensus 232 ~~~~~~ 237 (264)
T PRK13546 232 PKYEAF 237 (264)
T ss_pred HHhHHH
Confidence 754433
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=333.26 Aligned_cols=206 Identities=29% Similarity=0.450 Sum_probs=169.1
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g-------- 658 (1354)
+..++++|+++.|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 345899999999963 469999999999999999999999999999999999987 6899998865
Q ss_pred -------eEEEEeCCCCCCCCcHHHHHhcCCC---CC---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -------~i~yv~Q~~~~~~~ti~eni~~g~~---~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.++..|++||+.++.. .. .++.+++++..++...+. ...++++.+||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~ 186 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQ 186 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHH
Confidence 3899999998877899999987521 11 233444555555432221 123467889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEE-EEeCCeEEEecChH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRIL-VLEGGQITQSGNYQ 803 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~-~l~~G~i~~~g~~~ 803 (1354)
||++||||++++|+++||||||++||+.+.+.+.+.+.... +++|+|++||+++++.. +|+++ +|++|+|++.|+++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~-~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA-EEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 99999999999999999999999999999999877655443 45899999999999876 89975 57999999999998
Q ss_pred HHHhc
Q 000680 804 ELLLA 808 (1354)
Q Consensus 804 ~l~~~ 808 (1354)
++.++
T Consensus 266 ~~~~~ 270 (285)
T PRK14254 266 KIFEN 270 (285)
T ss_pred HHHhC
Confidence 87643
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=331.04 Aligned_cols=200 Identities=26% Similarity=0.418 Sum_probs=166.2
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEEE
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYV 663 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----------~i~yv 663 (1354)
.++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v 83 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV 83 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEe
Confidence 5899999999963 24699999999999999999999999999999999999999999999887 39999
Q ss_pred eCCCCC---CCCcHHHHHhcCCC--------C---CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 664 SQTSWI---QSGSIRDNILYGKP--------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 664 ~Q~~~~---~~~ti~eni~~g~~--------~---~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
+|++.+ ...++++|+.++.. . ++++..++++..++.+.. ..+..+||||||||++
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~qrv~ 152 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-----------HRQIGELSGGQKKRVF 152 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-----------cCCcccCCHHHHHHHH
Confidence 999854 34579999875421 0 122344555555554432 2456789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+++++ +|++++.|+++++..
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 9999999999999999999999999999887665544568999999999998765 8999777 899999999998753
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=329.39 Aligned_cols=204 Identities=27% Similarity=0.407 Sum_probs=171.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g--------- 658 (1354)
+.|+++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 15 ~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 15 QKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred ceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 46999999999973 3699999999999999999999999999999999999875 799998754
Q ss_pred --------eEEEEeCCCCCCCCcHHHHHhcCCC---CC-----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 659 --------SIAYVSQTSWIQSGSIRDNILYGKP---MD-----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 659 --------~i~yv~Q~~~~~~~ti~eni~~g~~---~~-----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
.++|++|++.+++.|++||+.++.. .. +++..++++.+++.+++. +..++.+.+|||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~ 164 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLSG 164 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCCH
Confidence 3899999999888899999987531 11 234455555565543332 223567789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|||||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l-~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-HhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999987765543 346899999999999875 89999999999999999
Q ss_pred hHHHHh
Q 000680 802 YQELLL 807 (1354)
Q Consensus 802 ~~~l~~ 807 (1354)
.+++..
T Consensus 244 ~~~~~~ 249 (265)
T PRK14252 244 TDTIFI 249 (265)
T ss_pred HHHHHh
Confidence 988764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=326.22 Aligned_cols=204 Identities=25% Similarity=0.394 Sum_probs=169.3
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC----CCcEEEEcC-----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYG----------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~----~~G~i~~~g----------- 658 (1354)
.++++|++++| . .++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence 58899999999 2 3689999999999999999999999999999999999999 999998876
Q ss_pred eEEEEeCCCC-CC--CCcHHHHHhc-----CCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 SIAYVSQTSW-IQ--SGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ~i~yv~Q~~~-~~--~~ti~eni~~-----g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.++|++|++. .+ ..|+.+|+.+ +....++++.+.++.+++.+. .+.+++.+.+||||||||++|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~l 151 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMMI 151 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHHH
Confidence 3999999984 23 3688888754 222233455666665555321 123456788999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. +|++++|++|++++.|+.+++.+.
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999999999998876655433 47899999999999865 899999999999999999998765
Q ss_pred C
Q 000680 809 G 809 (1354)
Q Consensus 809 ~ 809 (1354)
.
T Consensus 232 ~ 232 (254)
T PRK10418 232 P 232 (254)
T ss_pred C
Confidence 3
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=333.42 Aligned_cols=206 Identities=28% Similarity=0.376 Sum_probs=168.2
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC--------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g-------- 658 (1354)
+..++++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+.+ |++|+|.++|
T Consensus 37 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 37 KPHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred ceEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 346899999999963 359999999999999999999999999999999999864 4999998865
Q ss_pred -------eEEEEeCCCCCCCCcHHHHHhcCCC---C-CHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---M-DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 -------~i~yv~Q~~~~~~~ti~eni~~g~~---~-~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
.++|++|++.+++.|++||+.++.. . +.. +..++++..++...+. ....+++.+||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG 186 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGG 186 (286)
T ss_pred chHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHH
Confidence 3899999998887899999987632 1 111 2223334334321111 1224677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.. ..+++|+|++||+++.+.. ||++++|++|++++.|+.
T Consensus 187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~-~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE-LRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999998875544 3346899999999999876 899999999999999999
Q ss_pred HHHHhc
Q 000680 803 QELLLA 808 (1354)
Q Consensus 803 ~~l~~~ 808 (1354)
+++..+
T Consensus 266 ~~~~~~ 271 (286)
T PRK14275 266 AQLFTN 271 (286)
T ss_pred HHHHhC
Confidence 988654
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=338.78 Aligned_cols=210 Identities=19% Similarity=0.369 Sum_probs=170.1
Q ss_pred CCcEEEEeeEEEeCCC-CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEEcC---------
Q 000680 592 DRSVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG--------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~---~G~i~~~g--------- 658 (1354)
+..++++|++++|... ....+++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 3468999999999643 2346899999999999999999999999999999999999986 99998876
Q ss_pred --------eEEEEeCCCC--C-CCCcHHHHHhcC----CCCCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCC
Q 000680 659 --------SIAYVSQTSW--I-QSGSIRDNILYG----KPMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1354)
Q Consensus 659 --------~i~yv~Q~~~--~-~~~ti~eni~~g----~~~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~ 719 (1354)
.|+|++|+|. + +..|+.+|+... ...+.+ +..+.++..++ +++. ..++..+.+
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~ 161 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHE 161 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCccc
Confidence 3999999983 3 457888887542 122222 22233333332 2221 234678899
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEE
Q 000680 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1354)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1354)
|||||||||+||||++.+|+++|+||||++||+.+.+.+.+.+..... .|.|+|+||||++.+.. ||+|++|++|+|+
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999876655443 38899999999999875 8999999999999
Q ss_pred EecChHHHHhcC
Q 000680 798 QSGNYQELLLAG 809 (1354)
Q Consensus 798 ~~g~~~~l~~~~ 809 (1354)
+.|+.+++.++.
T Consensus 242 e~g~~~~i~~~p 253 (330)
T PRK09473 242 EYGNARDVFYQP 253 (330)
T ss_pred EECCHHHHHhCC
Confidence 999999998754
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=329.00 Aligned_cols=199 Identities=26% Similarity=0.348 Sum_probs=167.2
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC--------CcEEEEcC--------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI--------SGTVNLYG-------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~--------~G~i~~~g-------- 658 (1354)
++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 678999999963 46999999999999999999999999999999999999998 99999977
Q ss_pred -----eEEEEeCCCC-CCCCcHHHHHhcCCC-C-------C---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 659 -----SIAYVSQTSW-IQSGSIRDNILYGKP-M-------D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 659 -----~i~yv~Q~~~-~~~~ti~eni~~g~~-~-------~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
.++|++|++. ++..|++||+.++.. . . .++.+++++..++.. ..++++.+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-----------LVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-----------hhcCCcccCC
Confidence 2799999975 567899999987531 1 1 122344444444432 2346778999
Q ss_pred hHHHHHHHHHHHHh---------cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEE
Q 000680 722 GGQKQRIQLARAVY---------NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILV 790 (1354)
Q Consensus 722 gGQkqRv~lARal~---------~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~ 790 (1354)
|||||||+||||++ .+|+++||||||++||+.+.+.+.+.+.....+ ++|+|++||+++.+.. ||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 599999999999999999999998766554444 7999999999999875 899999
Q ss_pred EeCCeEEEecChHHHHh
Q 000680 791 LEGGQITQSGNYQELLL 807 (1354)
Q Consensus 791 l~~G~i~~~g~~~~l~~ 807 (1354)
|++|++++.|+.+++..
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999988754
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=328.80 Aligned_cols=206 Identities=24% Similarity=0.361 Sum_probs=170.3
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC--------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g-------- 658 (1354)
+..++++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.++ ++|+|.++|
T Consensus 18 ~~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 18 HSVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 347999999999973 3699999999999999999999999999999999999863 689998765
Q ss_pred -------eEEEEeCCCCCCCCcHHHHHhcCCC---CC---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -------~i~yv~Q~~~~~~~ti~eni~~g~~---~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. +. ++...+.++.+++...+.. ...+.+.+||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~ 167 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQ 167 (274)
T ss_pred hhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHH
Confidence 4899999998887899999987632 11 1223344555555333321 23467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEe---------CCe
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE---------GGQ 795 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~---------~G~ 795 (1354)
|||+||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|+ +|+
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~ 246 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL-KEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGK 246 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCce
Confidence 9999999999999999999999999999999988765544 356899999999999876 89999997 899
Q ss_pred EEEecChHHHHhc
Q 000680 796 ITQSGNYQELLLA 808 (1354)
Q Consensus 796 i~~~g~~~~l~~~ 808 (1354)
+++.|+.+++..+
T Consensus 247 ~~~~g~~~~~~~~ 259 (274)
T PRK14265 247 LVEFSPTEQMFGS 259 (274)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999998654
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=330.77 Aligned_cols=205 Identities=24% Similarity=0.338 Sum_probs=170.1
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g--------- 658 (1354)
..++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 20 ~~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 20 PAMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cEEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 35799999999973 4699999999999999999999999999999999999985 699998866
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC----CCHHHH----HHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MDKARY----DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~----~~~~~~----~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. ...+.+ .+.++.+++...+ .+.+++++.+||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQ 169 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHH
Confidence 3899999998888999999987531 222222 2333444443211 1234567889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+.+.+.+++.+.... +++|+|++||+++.+.. +|++++|++|++++.|+.++
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA-DRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999887654433 45899999999999876 89999999999999999999
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.+.
T Consensus 249 ~~~~ 252 (276)
T PRK14271 249 LFSS 252 (276)
T ss_pred HHhC
Confidence 8754
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=328.27 Aligned_cols=204 Identities=25% Similarity=0.408 Sum_probs=170.2
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g---------- 658 (1354)
.++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 6899999999963 3689999999999999999999999999999999999885 489998865
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. .++ ++..++++.+++.+++.. ..+.++.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 3899999998888999999987521 121 233455555565433321 12467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEe-----CCeEEEe
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE-----GGQITQS 799 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~-----~G~i~~~ 799 (1354)
||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++++.. ||++++|+ +|++++.
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL-RSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 9999999999999999999999999999999988766544 346899999999999876 89999997 5999999
Q ss_pred cChHHHHhc
Q 000680 800 GNYQELLLA 808 (1354)
Q Consensus 800 g~~~~l~~~ 808 (1354)
|+.+++.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999998643
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=327.18 Aligned_cols=204 Identities=27% Similarity=0.412 Sum_probs=171.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g---------- 658 (1354)
.++++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 4789999999963 469999999999999999999999999999999999864 4899998766
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|+||++++++.|++||+.++.. .++ +++.+.++.+++.+++..+ .++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 3899999999888899999987521 122 3445566666665544321 2466789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++++.. +|++++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL-KEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQ 231 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999987765544 457899999999999877 79999999999999999999
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14266 232 IFIN 235 (250)
T ss_pred HHhC
Confidence 8644
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=326.87 Aligned_cols=205 Identities=25% Similarity=0.358 Sum_probs=173.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g--------- 658 (1354)
..+.+++.++.|.. .++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 7 ~~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 83 (261)
T PRK14263 7 IVMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 (261)
T ss_pred ceEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccc
Confidence 46788889998863 4699999999999999999999999999999999999986 799998876
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCC---CC---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~---~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkq 726 (1354)
.++|++|++.+++.|++||+.++.. +. .++..+.++..++..++.. ..++++.+|||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~q 156 (261)
T PRK14263 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQ 156 (261)
T ss_pred hHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 2899999999888999999988642 11 2345566666666544432 234677899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEe--------CCeEE
Q 000680 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE--------GGQIT 797 (1354)
Q Consensus 727 Rv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~--------~G~i~ 797 (1354)
|++||||++++|++++|||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||+|++|+ +|+++
T Consensus 157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL-KKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 999999999999999999999999999999988766554 457899999999998876 89999996 89999
Q ss_pred EecChHHHHhc
Q 000680 798 QSGNYQELLLA 808 (1354)
Q Consensus 798 ~~g~~~~l~~~ 808 (1354)
+.|+.+++.+.
T Consensus 236 ~~g~~~~~~~~ 246 (261)
T PRK14263 236 EMGPTAQIFQN 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999998754
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=333.90 Aligned_cols=205 Identities=28% Similarity=0.448 Sum_probs=169.9
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-----CCCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-----~~~G~i~~~g--------- 658 (1354)
..+.++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999974 469999999999999999999999999999999999986 6899998865
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCCC---------------C-----HHHHHHHHHHhccHHHHhcCCCCCccc
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM---------------D-----KARYDKAIKACALDKDINNFDHGDLTE 712 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~~---------------~-----~~~~~~~~~~~~l~~~l~~l~~gd~t~ 712 (1354)
.++|++|++.+++.|++||+.++... + .++..++++.+++..++. +.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-------DR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh-------HH
Confidence 38999999988888999999976321 0 123344455555433332 23
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEE-EE
Q 000680 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRI-LV 790 (1354)
Q Consensus 713 ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i-~~ 790 (1354)
.++++.+|||||||||+||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++ ++
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~-~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEEL-AEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 45778899999999999999999999999999999999999999987765544 345899999999999876 8997 56
Q ss_pred EeCCeEEEecChHHHHhc
Q 000680 791 LEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 791 l~~G~i~~~g~~~~l~~~ 808 (1354)
|++|++++.|+++++.+.
T Consensus 273 l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 273 LTGGELVEYDDTDKIFEN 290 (305)
T ss_pred ecCCEEEEeCCHHHHHhC
Confidence 799999999999988643
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=327.45 Aligned_cols=204 Identities=25% Similarity=0.394 Sum_probs=166.9
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-----CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-----~~G~i~~~g---------- 658 (1354)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 5889999999963 3699999999999999999999999999999999999874 799998865
Q ss_pred -----eEEEEeCCCCCCC-CcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHH
Q 000680 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~-~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQ 724 (1354)
.++|++|++.++. .|++||+.++.. ... ++..++++..++...+. ......+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 3899999987765 699999986421 111 22334444444432211 12346678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEe------CCeEE
Q 000680 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE------GGQIT 797 (1354)
Q Consensus 725 kqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~------~G~i~ 797 (1354)
|||++||||++++|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++++.. ||+|++|+ +|+|+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL-KQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 99999999999999999999999999999999987655444 456899999999999865 89999997 89999
Q ss_pred EecChHHHHhc
Q 000680 798 QSGNYQELLLA 808 (1354)
Q Consensus 798 ~~g~~~~l~~~ 808 (1354)
+.|+++++...
T Consensus 233 ~~~~~~~~~~~ 243 (258)
T PRK14241 233 EIDDTEKIFSN 243 (258)
T ss_pred ecCCHHHHHhC
Confidence 99999998653
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=321.48 Aligned_cols=200 Identities=30% Similarity=0.421 Sum_probs=158.6
Q ss_pred cEEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEEcC----------e
Q 000680 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG----------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~---~~~G~i~~~g----------~ 659 (1354)
.+.++|++|.++... .+++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++| .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 356899999997542 3679999999999999999999999999999999999999 9999999877 3
Q ss_pred EEEEeCCCCCCCC-cHHHHHhcCCCC------CHHHHHHHHHHhccHHHHhcCCCCCccc-ccCCCCCCChHHHHHHHHH
Q 000680 660 IAYVSQTSWIQSG-SIRDNILYGKPM------DKARYDKAIKACALDKDINNFDHGDLTE-IGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 660 i~yv~Q~~~~~~~-ti~eni~~g~~~------~~~~~~~~~~~~~l~~~l~~l~~gd~t~-ig~~g~~LSgGQkqRv~lA 731 (1354)
++|++|++.+++. |++||+.++... .++...+..+.. .++. .+.+. ..+...+||||||||++||
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~----~l~~---~~l~~~~~~~~~~LS~G~~qrl~la 155 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV----LLRD---LALTRIGGNLVKGISGGERRRVSIA 155 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHH----HHHh---hcchhhhcccccCcCHHHHHHHHHH
Confidence 9999999987664 999999875211 111110011100 1111 12222 2356689999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCc-chhh-hcCEEEEEeCCeEEEec
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV-EFLS-EVDRILVLEGGQITQSG 800 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~-~~l~-~~d~i~~l~~G~i~~~g 800 (1354)
||++++|+++||||||++||+.+.+++.+.+.....+++|+|++||++ +.+. .+|++++|++|++++.|
T Consensus 156 ral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 156 VQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999998876655444688999999998 4655 58999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=326.99 Aligned_cols=205 Identities=25% Similarity=0.408 Sum_probs=170.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC-----CcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~-----~G~i~~~g---------- 658 (1354)
.++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|
T Consensus 7 ~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 7 AIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred eEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 6899999999963 35899999999999999999999999999999999999985 79887654
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC---C-C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~---~-~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. . . .++..++++..++...+.. ..++.+.+||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 3899999988877999999986421 1 1 1223445555554332221 23467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeC-----CeEEE
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEG-----GQITQ 798 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~-----G~i~~ 798 (1354)
||++||||++++|+++||||||++||+.+.+.+.+.+..... +++|+|++||+++.+.. ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 999999999999999999999999999999998876655433 48999999999999876 899999999 99999
Q ss_pred ecChHHHHhc
Q 000680 799 SGNYQELLLA 808 (1354)
Q Consensus 799 ~g~~~~l~~~ 808 (1354)
.|+++++.+.
T Consensus 237 ~~~~~~~~~~ 246 (261)
T PRK14258 237 FGLTKKIFNS 246 (261)
T ss_pred eCCHHHHHhC
Confidence 9999998754
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=325.64 Aligned_cols=204 Identities=26% Similarity=0.378 Sum_probs=165.5
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC-----CcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~-----~G~i~~~g---------- 658 (1354)
.++++|++++|+. +++++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4788999999963 46999999999999999999999999999999999999874 89998865
Q ss_pred -----eEEEEeCCCCCCC-CcHHHHHhcCCC---C-CHHH----HHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHH
Q 000680 659 -----SIAYVSQTSWIQS-GSIRDNILYGKP---M-DKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~-~ti~eni~~g~~---~-~~~~----~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQ 724 (1354)
.++|++|++.++. .|++||+.++.. . .++. ..+.++..++...+. .....++.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK-------DRLKTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhh-------hhhcCCcccCCHHH
Confidence 3899999998766 699999986431 1 2221 222222333322111 11235678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 725 kqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
|||++||||++++|++++|||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL-KKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTD 232 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988755443 457999999999999886 8999999999999999999
Q ss_pred HHHhc
Q 000680 804 ELLLA 808 (1354)
Q Consensus 804 ~l~~~ 808 (1354)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14272 233 QLFTN 237 (252)
T ss_pred HHHhC
Confidence 98654
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=339.98 Aligned_cols=195 Identities=25% Similarity=0.408 Sum_probs=164.2
Q ss_pred eeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEE
Q 000680 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIA 661 (1354)
Q Consensus 599 ~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------------~i~ 661 (1354)
|++++|+. . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 67888863 2 35 99999999999999999999999999999999999999998765 289
Q ss_pred EEeCCCCCCC-CcHHHHHhcCCCC-C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 662 YVSQTSWIQS-GSIRDNILYGKPM-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 662 yv~Q~~~~~~-~ti~eni~~g~~~-~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
|++|++.++. .|++||+.|+... . +++.++.++..++.+.+ ..++.+||||||||++||||++
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLL-----------GRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHH
Confidence 9999998764 6999999986431 1 12345555555554332 3567799999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
.+|+++||||||++||+...+.+.+.+.....+ |+|+|++||+++.+.. +|++++|++|++++.|+++++....
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 999999999999999999999998876655444 7899999999999876 8999999999999999999987654
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=327.67 Aligned_cols=207 Identities=25% Similarity=0.372 Sum_probs=168.6
Q ss_pred cEEEEeeEEEeCCC------CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------
Q 000680 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------- 658 (1354)
.++++|+++.|+.. .++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 37899999999731 135799999999999999999999999999999999999999999998876
Q ss_pred -------eEEEEeCCCC--C-CCCcHHHHHhcCC----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCC
Q 000680 659 -------SIAYVSQTSW--I-QSGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1354)
Q Consensus 659 -------~i~yv~Q~~~--~-~~~ti~eni~~g~----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~L 720 (1354)
.++|++|++. + .+.|++||+.+.. ..+. ++.++.++.+++..+ ..+.++.+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCccC
Confidence 3899999983 3 4579999986531 1121 233444444444321 123567899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEE
Q 000680 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1354)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1354)
|||||||++||||++++|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||++++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999998876554443 37899999999999986 89999999999999
Q ss_pred ecChHHHHhcCc
Q 000680 799 SGNYQELLLAGT 810 (1354)
Q Consensus 799 ~g~~~~l~~~~~ 810 (1354)
.|+.+++.....
T Consensus 233 ~g~~~~~~~~~~ 244 (268)
T PRK10419 233 TQPVGDKLTFSS 244 (268)
T ss_pred eCChhhccCCCC
Confidence 999999875433
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=324.66 Aligned_cols=204 Identities=27% Similarity=0.429 Sum_probs=166.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc--C---CCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~--~---~~G~i~~~g---------- 658 (1354)
.++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 5889999999973 469999999999999999999999999999999999865 4 589998865
Q ss_pred -----eEEEEeCCCCCCCCcHHHHHhcCCC---C-CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 -----~i~yv~Q~~~~~~~ti~eni~~g~~---~-~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
.++|++|++.+++.|++||+.++.. . .+ ++..+.++.+++...+. ......+.+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 3899999998887899999986521 1 11 12233334443322111 123467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|+++||||||++||+++.+.+.+.+... .+++|+|++||+++.+.. ||+|++|++|++++.|+..+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL-RDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-HhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987765544 345899999999999876 89999999999999999888
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
...+
T Consensus 234 ~~~~ 237 (252)
T PRK14255 234 MFLN 237 (252)
T ss_pred HhcC
Confidence 7654
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=317.13 Aligned_cols=185 Identities=30% Similarity=0.424 Sum_probs=155.1
Q ss_pred eeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEE
Q 000680 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIA 661 (1354)
Q Consensus 599 ~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------------~i~ 661 (1354)
|++++|+.. .+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 5 ~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 788888742 23 99999999 99999999999999999999999999999998865 389
Q ss_pred EEeCCCCCC-CCcHHHHHhcCCCC-C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 662 YVSQTSWIQ-SGSIRDNILYGKPM-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 662 yv~Q~~~~~-~~ti~eni~~g~~~-~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
|++|++.++ +.|++||+.++... . +++..+.++..++.... ..++.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLL-----------NRYPAQLSGGEKQRVALARALA 147 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHh-----------hcCcccCCHHHHHHHHHHHHHh
Confidence 999999876 56999999875321 1 23344555555554322 3567899999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
++|++++|||||++||+.+.+.+++.+.....+ |+|+|++||+++.+.. +|++++|++|++++.|
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999988766554443 8899999999999865 8999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=317.99 Aligned_cols=191 Identities=27% Similarity=0.412 Sum_probs=160.5
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
++++|+++.|++.. ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68899999996432 25699999999999999999999999999999999999999999998875
Q ss_pred -eEEEEeCCCCCCC-CcHHHHHhcCCC----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHH
Q 000680 659 -SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 659 -~i~yv~Q~~~~~~-~ti~eni~~g~~----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv 728 (1354)
.++|++|++.++. .|+.||+.++.. .+. +++.++++.+++.+.++ ..+.+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLD-----------YYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHH
Confidence 3899999997765 799999987532 222 24455666666654443 45568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhhcCEEEEEeCCeE
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1354)
Q Consensus 729 ~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1354)
+||||++.+|+++|||||+++||+.+.+.+.+.+..... +++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999998876554443 48999999999997767999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=310.86 Aligned_cols=174 Identities=26% Similarity=0.428 Sum_probs=151.3
Q ss_pred cEEEEeeEEEeCCC---CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cCCCcEEEEcC----------
Q 000680 594 SVKIQEGNFSWDPE---LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG---------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~---~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~--~~~~G~i~~~g---------- 658 (1354)
.++++|++|.|+.. ...++++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 47899999999742 1256999999999999999999999999999999999999 99999998876
Q ss_pred eEEEEeCCCCCCC-CcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 000680 659 SIAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1354)
Q Consensus 659 ~i~yv~Q~~~~~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1354)
.++|++|++.++. .|++||+.++... . .||||||||++||||++.+
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~------------------~---------------~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKL------------------R---------------GLSGGERKRVSIALELVSN 129 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHh------------------c---------------cCCHHHHHHHHHHHHHHcC
Confidence 4899999987764 6999999753210 0 7999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcc-hhhh-cCEEEEEeCCeEEEec
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE-FLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~-~l~~-~d~i~~l~~G~i~~~g 800 (1354)
|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++ .+.. +|++++|++|++++.|
T Consensus 130 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999988766554446899999999997 5654 8999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=295.69 Aligned_cols=204 Identities=28% Similarity=0.420 Sum_probs=169.9
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
|+.+|.+++-. .+.+|++++|++++||+++|+||||+||||||++|.||+.|++|++.++| .-|
T Consensus 2 i~a~nls~~~~---Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLA---GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEee---cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 56778887765 35699999999999999999999999999999999999999999999988 368
Q ss_pred EEeCCCCC-CCCcHHHHHhcCCC-C----CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 662 YVSQTSWI-QSGSIRDNILYGKP-M----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 662 yv~Q~~~~-~~~ti~eni~~g~~-~----~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
.+||+..+ |.-||+|-+.+|.- . +.++-.++.++|-...|+..+.. +...+|||||||||.|||.|.
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-------R~y~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-------RDYRTLSGGEQQRVQLARVLA 151 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-------cchhhcCchHHHHHHHHHHHH
Confidence 99999766 89999999999852 2 11222333333333344444443 345679999999999999999
Q ss_pred c------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 736 N------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 736 ~------~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
+ ++++++||||||+||.....++++.......+|..|+.|-||++.... ||+|++|++||++..|++++.+..
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH
Confidence 6 456999999999999999999998777777788999999999999765 999999999999999999998854
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=304.36 Aligned_cols=159 Identities=28% Similarity=0.500 Sum_probs=144.4
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEE
Confidence 468899999963 3699999999999999999999999999999999999999999998876 3899
Q ss_pred EeCCCCCCC-CcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 000680 663 VSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1354)
Q Consensus 663 v~Q~~~~~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1354)
++|++.++. .|++||+. ||||||||++||||++.+|+++
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 999998765 59999974 9999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeE
Q 000680 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 742 lLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1354)
||||||++||+.+.+.+.+.+.....+|.|+|++||+.+++.. ||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999988766555568899999999999885 899999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=322.49 Aligned_cols=205 Identities=23% Similarity=0.282 Sum_probs=164.7
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
.++++|+++.|+. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 5889999999963 3589999999999999999999999999999999999999999998864
Q ss_pred -------eEEEEeCCCC--C-CCCcHHHHHhcC-----CCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 -------SIAYVSQTSW--I-QSGSIRDNILYG-----KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 -------~i~yv~Q~~~--~-~~~ti~eni~~g-----~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
.++|++|++. + +..|+.+|+.+. .....+... ...+.++.++.+ .+..+..+.+||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~l~~l~l~-~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRA------AAHDWLEEVEID-PTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHH------HHHHHHHHcCCC-hhhhhcCchhcCHH
Confidence 2799999974 2 345889998542 110111111 112233333321 12345678899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
||||++||||++++|+++||||||++||+.+.+.+.+.+..... .|.|+|+|||+++.+.. +|++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999998876655443 48999999999999885 89999999999999999
Q ss_pred hHHHHhc
Q 000680 802 YQELLLA 808 (1354)
Q Consensus 802 ~~~l~~~ 808 (1354)
.+++..+
T Consensus 233 ~~~~~~~ 239 (253)
T TIGR02323 233 TDQVLDD 239 (253)
T ss_pred HHHHhcC
Confidence 9888643
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=337.37 Aligned_cols=205 Identities=22% Similarity=0.248 Sum_probs=171.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCC-CC
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI-QS 671 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~-~~ 671 (1354)
..++++|++|.|+....+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.-.++++.+.+ ..
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~ 99 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCC
Confidence 45889999999976544579999999999999999999999999999999999999999999999976666666544 45
Q ss_pred CcHHHHHhcCC---CCCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEe
Q 000680 672 GSIRDNILYGK---PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1354)
Q Consensus 672 ~ti~eni~~g~---~~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLD 744 (1354)
.|++||+.++. ..+.+ +..++++.+++.+.++ .++.+||||||||++||||++.+|+++|||
T Consensus 100 lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-----------~~~~~LSGGQrQRVaLArAL~~~P~LLLLD 168 (549)
T PRK13545 100 LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-----------QPVKTYSSGMKSRLGFAISVHINPDILVID 168 (549)
T ss_pred CcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 69999998642 12222 2334555555554333 456789999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 745 ep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|||++||+...+.+++.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 169 EPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 169 EALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 9999999999999887665544568999999999999876 899999999999999999998764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=286.40 Aligned_cols=194 Identities=27% Similarity=0.405 Sum_probs=165.6
Q ss_pred cEEEEeeEEEeCCC-CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
.|++++++.+-+.. ...++|++++|.|++||.++||||+||||||||..++|+.+|++|+|.+.|
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 46666766665433 245689999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEeCCCC-CCCCcHHHHHhcCCCCC-------HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 ---SIAYVSQTSW-IQSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 ---~i~yv~Q~~~-~~~~ti~eni~~g~~~~-------~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
+||+|+|... ++|+|..||+....+.. .+...+.+++.+|.+-+. ..+.+||||++||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~-----------HyP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLT-----------HYPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccc-----------cCccccCchHHHH
Confidence 5999999875 68999999998754322 234556677777766554 4456899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhhcCEEEEEeCCeEEE
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~ 798 (1354)
|+||||+...|+|++-||||-+||..++++|.+.++... ..|.|.|+||||.....+|||++-|++|++++
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999998887654 46899999999999999999999999999975
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=310.89 Aligned_cols=180 Identities=22% Similarity=0.308 Sum_probs=151.3
Q ss_pred cEEEEeeEEEeCCC-CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEEcC-----------
Q 000680 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG----------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~---~~~G~i~~~g----------- 658 (1354)
.+.++|++|.|+.. .++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 36789999999864 34579999999999999999999999999999999999999 8999998876
Q ss_pred -eEEEEeCCCCCCC-CcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 000680 659 -SIAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1354)
Q Consensus 659 -~i~yv~Q~~~~~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~ 736 (1354)
.++|++|++.++. .|++||+.++.... ..++...||||||||++||||+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 3899999987664 69999998753110 124567899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcC-Ccchhh-hcCEEEEEeCCeEEEec
Q 000680 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTH-QVEFLS-EVDRILVLEGGQITQSG 800 (1354)
Q Consensus 737 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH-~~~~l~-~~d~i~~l~~G~i~~~g 800 (1354)
+|+++||||||++||+.+.+.+.+.+.....+ +.|+|+++| +.+.+. .||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999988766554433 567666655 556665 48999999999998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=318.25 Aligned_cols=189 Identities=24% Similarity=0.378 Sum_probs=156.0
Q ss_pred cceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC----CCcEEEEcC-----------eEEEEeCCCC--C-CCCc
Q 000680 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYG-----------SIAYVSQTSW--I-QSGS 673 (1354)
Q Consensus 612 ~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~----~~G~i~~~g-----------~i~yv~Q~~~--~-~~~t 673 (1354)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++. + ...|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 47899999999999999999999999999999999999 899999876 4999999984 3 2469
Q ss_pred HHHHHhcCCC----CC---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000680 674 IRDNILYGKP----MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1354)
Q Consensus 674 i~eni~~g~~----~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1354)
++||+.+... .. .+++.+.++.+++.+ + .+..++.+.+|||||||||+||||++++|+++|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999865321 11 223445555555531 1 0123467789999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 747 FSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|++||+.+.+.+.+.+..... .++|+|++||+++.+.. +|++++|++|++.+.|+++++...
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999998876655444 37899999999999875 899999999999999999998754
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=290.84 Aligned_cols=195 Identities=27% Similarity=0.391 Sum_probs=159.7
Q ss_pred EEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------EEEEeCCC
Q 000680 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTS 667 (1354)
Q Consensus 596 ~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~--------i~yv~Q~~ 667 (1354)
.+++.+.+|+..+ .++|+|+|++|.+||.++++||+||||||||+.++|+++|..|+|.++|+ -|.|+|++
T Consensus 5 ~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~ 83 (259)
T COG4525 5 NVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNE 83 (259)
T ss_pred ehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccC
Confidence 4567788887653 67999999999999999999999999999999999999999999999874 69999997
Q ss_pred CC-CCCcHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000680 668 WI-QSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 668 ~~-~~~ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1354)
-+ +-.++.||+.||.. .++. ...+.+...+|++. + .+...+||||||||+.|||||..+|+
T Consensus 84 ~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~-------~----~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 84 ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGA-------E----HKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccc-------c----ccceEeecchHHHHHHHHHHhhcCcc
Confidence 54 56899999999864 2332 22233333333221 1 25667899999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhh-hcCEEEEEe--CCeEEEecCh
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLE--GGQITQSGNY 802 (1354)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~-~~d~i~~l~--~G~i~~~g~~ 802 (1354)
.++||||++|||+-+++++-+.++..+ ..||.+++|||++++.- -+++++||. .|+|++.-++
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999876666654 46999999999999865 489999997 6899976443
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=318.47 Aligned_cols=182 Identities=35% Similarity=0.459 Sum_probs=152.3
Q ss_pred ceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------EEEEeCCCCCCC-CcHHHHHhcCC-
Q 000680 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWIQS-GSIRDNILYGK- 682 (1354)
Q Consensus 613 l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~--------i~yv~Q~~~~~~-~ti~eni~~g~- 682 (1354)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|++|++.++. .|++||+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999873 589999987765 79999998641
Q ss_pred ----CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHH
Q 000680 683 ----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1354)
Q Consensus 683 ----~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~ 754 (1354)
..++ ++..+.++.+++.+.++ .++.+||||||||++||||++++|+++||||||++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 149 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAAD-----------KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHc-----------CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 1222 23445556556554332 4567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 755 AATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 755 ~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+..++
T Consensus 150 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 150 RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9998876655444 47899999999998876 899999999999988765443
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=308.38 Aligned_cols=174 Identities=22% Similarity=0.335 Sum_probs=150.6
Q ss_pred cEEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cCCCcEEEEcC---------eEE
Q 000680 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG---------SIA 661 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~--~~~~G~i~~~g---------~i~ 661 (1354)
.++++|+++.|++.. ++++++|+||++++||+++|+||||||||||+++|+|.. +|++|+|.++| .++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 478999999997421 246999999999999999999999999999999999986 48999999876 489
Q ss_pred EEeCCCCCCC-CcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 662 YVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 662 yv~Q~~~~~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
|++|++.++. .|++||+.++.. ++ +||||||||++||||++.+|++
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~~~p~v 129 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELAAKPSI 129 (192)
T ss_pred EecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHhcCCcE
Confidence 9999987655 699999986420 00 7999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcch-h-hhcCEEEEEeC-CeEEEec
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-L-SEVDRILVLEG-GQITQSG 800 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l-~~~d~i~~l~~-G~i~~~g 800 (1354)
++|||||++||+.+.+++++.+.....+++|+|++||+++. + ..+|++++|++ |++++.|
T Consensus 130 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 130 LFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999988665544468999999999984 4 45899999999 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=319.52 Aligned_cols=206 Identities=22% Similarity=0.344 Sum_probs=167.2
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
.+.+.++|++++|+. +++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~ 84 (257)
T PRK14246 8 EDVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84 (257)
T ss_pred hhheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC
Confidence 346899999999963 4689999999999999999999999999999999999999997765543
Q ss_pred ------eEEEEeCCCCCCC-CcHHHHHhcCCC---C-CHHH----HHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP---M-DKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~-~ti~eni~~g~~---~-~~~~----~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
.++|++|+|.++. .|++||+.++.. . .++. ..+.++..++.+.+ ....++.+..||||
T Consensus 85 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G 157 (257)
T PRK14246 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGG 157 (257)
T ss_pred HHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHH
Confidence 3899999998775 599999987521 1 2222 22333333332211 01234677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
||||++||||++++|++++|||||++||+.+.+.+.+.+... .+++|+|+|||+++++.. ||++++|++|++++.|+.
T Consensus 158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~ 236 (257)
T PRK14246 158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL-KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSS 236 (257)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999987755443 456899999999999865 899999999999999999
Q ss_pred HHHHhc
Q 000680 803 QELLLA 808 (1354)
Q Consensus 803 ~~l~~~ 808 (1354)
+++.+.
T Consensus 237 ~~~~~~ 242 (257)
T PRK14246 237 NEIFTS 242 (257)
T ss_pred HHHHhC
Confidence 988754
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=334.66 Aligned_cols=214 Identities=21% Similarity=0.361 Sum_probs=177.8
Q ss_pred CCcEEEEeeEEEeCCC--------CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----
Q 000680 592 DRSVKIQEGNFSWDPE--------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~--------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----- 658 (1354)
+..++++|++..|... ....+++||||++++||+++|||++|||||||.++|+|+.+|++|+|.++|
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 3457799999999852 234689999999999999999999999999999999999999999999876
Q ss_pred ----------eEEEEeCCCCC---CCCcHHHHHhcCC----CCC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCC
Q 000680 659 ----------SIAYVSQTSWI---QSGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1354)
Q Consensus 659 ----------~i~yv~Q~~~~---~~~ti~eni~~g~----~~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g 717 (1354)
++-+++|+|.- +..||+++|.-.. ... +++..+.++..+|.+++ ...++
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~----------l~ryP 427 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF----------LDRYP 427 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHH----------HhcCc
Confidence 48899999852 5689999987432 111 23445556666766532 34778
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 718 ~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
.+|||||||||+|||||..+|+++++|||+|+||+-+..++.+.+.+... -|-|.|+||||+.++.+ ||||+||++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 89999999999999999999999999999999999999999887665543 38899999999999988 89999999999
Q ss_pred EEEecChHHHHhcC-chHHHH
Q 000680 796 ITQSGNYQELLLAG-TAFEQL 815 (1354)
Q Consensus 796 i~~~g~~~~l~~~~-~~~~~~ 815 (1354)
|++.|+.+++.+.. ..|.+.
T Consensus 508 iVE~G~~~~v~~~p~h~Ytr~ 528 (539)
T COG1123 508 IVEEGPTEKVFENPQHPYTRK 528 (539)
T ss_pred EEEeCCHHHHhcCCCChHHHH
Confidence 99999999988764 344433
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=305.26 Aligned_cols=160 Identities=29% Similarity=0.488 Sum_probs=144.4
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|++++| +++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48899999987 79999999999999999999999999999999999999999999876 4
Q ss_pred EEEEeCCC----CCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 660 IAYVSQTS----WIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 660 i~yv~Q~~----~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
++|++|++ ..++.|++||+.++.. ||||||||++||||++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHc
Confidence 89999985 3456899999987421 9999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeE
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 736 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1354)
.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999887665544468999999999998877 899999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=312.47 Aligned_cols=181 Identities=28% Similarity=0.409 Sum_probs=151.1
Q ss_pred EEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------e
Q 000680 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------S 659 (1354)
Q Consensus 597 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------------~ 659 (1354)
++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4688999963 4699999999999999999999999999999999999999999998765 3
Q ss_pred EEEEeCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 660 IAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 660 i~yv~Q~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
++|++|++.++. .|++||+.++.. .. .++..+.++..++.+.. +.+..+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-----------KQKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-----------cCChhhCCHHHHHHHHHH
Confidence 899999998765 799999987432 11 23344555555554332 355678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEE
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1354)
||++++|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+..||++++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999999998876655444589999999999987779999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=287.30 Aligned_cols=204 Identities=24% Similarity=0.382 Sum_probs=172.7
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
.+++++|....|.. ..+|++||++.++|+.+.|+|.+||||||+|+||.=+..|..|.|.++|
T Consensus 5 ~~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 5 NALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred cceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 46788888888875 3599999999999999999999999999999999999999999999876
Q ss_pred ------------eEEEEeCCCCCC-CCcHHHHHhcC------CCCC--HHHHHHHHHHhccHHHHhcCCCCCcccccCCC
Q 000680 659 ------------SIAYVSQTSWIQ-SGSIRDNILYG------KPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1354)
Q Consensus 659 ------------~i~yv~Q~~~~~-~~ti~eni~~g------~~~~--~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g 717 (1354)
+.++|+|+..++ .+|+.||+.-. .+-+ .++.+..+...++.+.-+ ..+
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-----------~YP 150 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-----------AYP 150 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-----------cCc
Confidence 379999998775 57999999743 2221 234444555566654433 456
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeE
Q 000680 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 718 ~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1354)
..|||||+||++|||||..+|+++|+|||||||||+-.-.+.+.+.....+|+|.++|||.+.|.++ +.+|+.+++|.|
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 7899999999999999999999999999999999998888776555566789999999999999998 599999999999
Q ss_pred EEecChHHHHhcCc
Q 000680 797 TQSGNYQELLLAGT 810 (1354)
Q Consensus 797 ~~~g~~~~l~~~~~ 810 (1354)
.++|+++++..++.
T Consensus 231 EE~G~P~qvf~nP~ 244 (256)
T COG4598 231 EEEGPPEQVFGNPQ 244 (256)
T ss_pred cccCChHHHhcCCC
Confidence 99999999987643
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=302.79 Aligned_cols=160 Identities=34% Similarity=0.464 Sum_probs=144.7
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------e
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------~ 659 (1354)
++++|++++|+. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 468999999964 4699999999999999999999999999999999999999999998765 3
Q ss_pred EEEEeCCCCCC-CCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 660 i~yv~Q~~~~~-~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1354)
++|++|+|.++ +.|++||+.+. ||||||||++||||++++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 89999998776 56999998764 9999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
++++|||||++||+.+.+.+++.+.....+ ++|+|++||+++.+.. +|++++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999998766655455 7899999999999985 89999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=317.04 Aligned_cols=193 Identities=25% Similarity=0.417 Sum_probs=160.0
Q ss_pred EEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEE
Q 000680 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAY 662 (1354)
Q Consensus 596 ~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~y 662 (1354)
+++|+++. .+|+|+||++++||+++|+|+||||||||+++|+|..++ +|+|.++| .++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 45666663 279999999999999999999999999999999999864 99999876 2899
Q ss_pred EeCCCC-CCCCcHHHHHhcCCCC--C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh
Q 000680 663 VSQTSW-IQSGSIRDNILYGKPM--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 663 v~Q~~~-~~~~ti~eni~~g~~~--~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~ 735 (1354)
++|++. .++.|++||+.++... + .++..++++..++.+.+ ...+..||||||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL-----------GRSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHh
Confidence 999974 5678999999986432 1 22445566666654333 2466789999999999999999
Q ss_pred c-------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 736 N-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 736 ~-------~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
+ +|+++||||||++||+...+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 8 679999999999999999999887665544468999999999998765 89999999999999999988754
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=300.07 Aligned_cols=158 Identities=39% Similarity=0.646 Sum_probs=144.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
++++|+++.|+.. ..++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4688999999753 23689999999999999999999999999999999999999999999877 389
Q ss_pred EEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 000680 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1354)
Q Consensus 662 yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~il 741 (1354)
|++|++.+++.|++||+ ||||||||++||||++.+|+++
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988888999997 9999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCe
Q 000680 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1354)
Q Consensus 742 lLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1354)
||||||++||+.+.+.+.+.+... .+++|+|++||+++.++.||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999987765444 45799999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=304.02 Aligned_cols=202 Identities=23% Similarity=0.351 Sum_probs=169.5
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------eE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~i 660 (1354)
.+.++++.+|.. -.+++|+||++++||+++++||||||||||+++|.|.++|++|+|.++| .|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 467889998873 4699999999999999999999999999999999999999999999988 38
Q ss_pred EEEeCCCCCC-CCcHHHHHhcCCC-------------C--C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCC
Q 000680 661 AYVSQTSWIQ-SGSIRDNILYGKP-------------M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1354)
Q Consensus 661 ~yv~Q~~~~~-~~ti~eni~~g~~-------------~--~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~L 720 (1354)
+--+|.+-+| ++||.||++.+.. + + .++..+.++.++|.+.. ++...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a-----------~~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA-----------DRPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhh-----------cchhhcC
Confidence 8999999775 6799999987621 1 0 11222333344443322 3667899
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEE
Q 000680 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1354)
Q Consensus 721 SgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1354)
|+|||+|+.|||||+.+|+++|||||.+|+.+....++.+.+.+... .|.|+++|.||++.+.. ||||+||+.|+++.
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999999999999999877665544 46899999999999876 89999999999999
Q ss_pred ecChHHHHhcCc
Q 000680 799 SGNYQELLLAGT 810 (1354)
Q Consensus 799 ~g~~~~l~~~~~ 810 (1354)
+|+|+|+.+++.
T Consensus 231 eG~P~eV~~dp~ 242 (250)
T COG0411 231 EGTPEEVRNNPR 242 (250)
T ss_pred cCCHHHHhcCHH
Confidence 999999987654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=356.70 Aligned_cols=206 Identities=19% Similarity=0.289 Sum_probs=171.7
Q ss_pred CcEEEEeeEEEeCCC--------CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000680 593 RSVKIQEGNFSWDPE--------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~--------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------ 658 (1354)
..++++|+++.|+.. ....+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 458999999999631 124689999999999999999999999999999999999999999999876
Q ss_pred ----------eEEEEeCCCC--C-CCCcHHHHHhcCC---CC-CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCC
Q 000680 659 ----------SIAYVSQTSW--I-QSGSIRDNILYGK---PM-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1354)
Q Consensus 659 ----------~i~yv~Q~~~--~-~~~ti~eni~~g~---~~-~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g 717 (1354)
+|+|++|+|. + ++.||.||+.++. .. .. ++..+.++.+++..+. ...+.
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~----------~~~~~ 461 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEH----------AWRYP 461 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHH----------hhCCc
Confidence 3899999983 3 4679999997642 11 11 3445566666664221 12556
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 718 ~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
.+|||||||||+||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|+||||++.+.. ||+|++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999876655444 38899999999999876 89999999999
Q ss_pred EEEecChHHHHhc
Q 000680 796 ITQSGNYQELLLA 808 (1354)
Q Consensus 796 i~~~g~~~~l~~~ 808 (1354)
|++.|+.+++..+
T Consensus 542 iv~~g~~~~i~~~ 554 (623)
T PRK10261 542 IVEIGPRRAVFEN 554 (623)
T ss_pred EEEecCHHHHhcC
Confidence 9999999998764
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=313.00 Aligned_cols=192 Identities=28% Similarity=0.336 Sum_probs=154.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeC-CCCC-CCC
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ-TSWI-QSG 672 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q-~~~~-~~~ 672 (1354)
+.++|.+..|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|...+..+ ...+ ++.
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC
Confidence 456677777753 46999999999999999999999999999999999999999999999997544333 2333 467
Q ss_pred cHHHHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 673 SIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 673 ti~eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
|++||+.++.. .+.+ +..++++..++.+.+ .....+||||||||++||||++++|+++||||
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-----------DLPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999986532 1221 233334433443222 24567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
||++||+.+.+.+.+.+.....+++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999888665554567899999999999875 8999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=316.08 Aligned_cols=198 Identities=22% Similarity=0.307 Sum_probs=161.6
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCC--ccCCCcEEEEcC-------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYG------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~--~~~~~G~i~~~g------------- 658 (1354)
.++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 5899999999963 3699999999999999999999999999999999998 579999998865
Q ss_pred -eEEEEeCCCCCCC-CcHHHHHhcCCC----------CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCC-CCC
Q 000680 659 -SIAYVSQTSWIQS-GSIRDNILYGKP----------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGL-NLS 721 (1354)
Q Consensus 659 -~i~yv~Q~~~~~~-~ti~eni~~g~~----------~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~-~LS 721 (1354)
.++|++|++.++. .|+++|+.++.. .+. ++..++++.+++.+. ..+.... .||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS----------FLSRNVNEGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh----------hhccccccCCC
Confidence 2789999987665 589999876421 011 122334444444311 1234444 599
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh--cCEEEEEeCCeEEEe
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE--VDRILVLEGGQITQS 799 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~ 799 (1354)
||||||++||||++++|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++++.. +|++++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999887665544568999999999999875 799999999999999
Q ss_pred cChHH
Q 000680 800 GNYQE 804 (1354)
Q Consensus 800 g~~~~ 804 (1354)
|++++
T Consensus 234 ~~~~~ 238 (252)
T CHL00131 234 GDAEL 238 (252)
T ss_pred cChhh
Confidence 98874
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=315.48 Aligned_cols=180 Identities=24% Similarity=0.364 Sum_probs=147.9
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEEEe-CCCCC-CCCcHH
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAYVS-QTSWI-QSGSIR 675 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~yv~-Q~~~~-~~~ti~ 675 (1354)
+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++ |++.+ +..|++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 4699999999999999999999999999999999999999999998876 489998 55555 467999
Q ss_pred HHHhcCCC---CCHH----HHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000680 676 DNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1354)
Q Consensus 676 eni~~g~~---~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1354)
||+.+... .+.+ +..+.++.+++.+.. ..+..+||||||||++||||++.+|+++||||||+
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-----------DTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99976422 2222 223344444443322 24567899999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 749 AVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 749 ~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
+||+.+.+++.+.+..... +++|+|++||+++++.. ||++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999998876655433 47899999999999876 8999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=307.33 Aligned_cols=183 Identities=25% Similarity=0.296 Sum_probs=156.3
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| +++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEE
Confidence 678999999963 4689999999999999999999999999999999999999999999876 3899
Q ss_pred EeCCCCCC-CCcHHHHHhcCCC----CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 000680 663 VSQTSWIQ-SGSIRDNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1354)
Q Consensus 663 v~Q~~~~~-~~ti~eni~~g~~----~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1354)
++|++.++ +.|++||+.++.+ .++++.+++++..++....+ .+..+||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHHHHHhcC
Confidence 99998765 4799999987532 23456677777777764432 45678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhc-CEEEEE
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVL 791 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~-d~i~~l 791 (1354)
|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++++..+ +|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999998876554445688999999999999876 677766
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=277.60 Aligned_cols=201 Identities=29% Similarity=0.421 Sum_probs=168.9
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
+|++++.+|.|... .+|-||+|+.+.||.+.+.||+|+|||||++.+.=+.-|.+|+..+.|
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 58899999999853 589999999999999999999999999999999888889999998865
Q ss_pred ----eEEEEeCCCCC-CCCcHHHHHhc------CCCCC--HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 659 ----SIAYVSQTSWI-QSGSIRDNILY------GKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 659 ----~i~yv~Q~~~~-~~~ti~eni~~------g~~~~--~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
++|.|+|+-.+ +..||.||+.- |.+.+ ..+..+.++...|.+..+.+ +..|||||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~-----------plhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRY-----------PLHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccC-----------ceecccchh
Confidence 49999999766 46799999864 22222 22344555555555544444 457999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
|||+||||++.+|+++|+||||+||||+...++.+.+......|-|-++|||.+++.++ |.+|+.|++|+|++.|+.+-
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999999999999999999987665555678999999999999987 79999999999999999877
Q ss_pred HHhc
Q 000680 805 LLLA 808 (1354)
Q Consensus 805 l~~~ 808 (1354)
+.+.
T Consensus 228 ft~p 231 (242)
T COG4161 228 FTEP 231 (242)
T ss_pred ccCc
Confidence 6543
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=292.85 Aligned_cols=200 Identities=28% Similarity=0.438 Sum_probs=171.8
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~ 661 (1354)
|+++|++.+|+. +.+++|+|++|++|.+++++||||+||||||+.+.+++++++|+|.++| +++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 678999999974 4799999999999999999999999999999999999999999999998 377
Q ss_pred EEeCCCCCC-CCcHHHHHhcCC-CC--------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHH
Q 000680 662 YVSQTSWIQ-SGSIRDNILYGK-PM--------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1354)
Q Consensus 662 yv~Q~~~~~-~~ti~eni~~g~-~~--------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lA 731 (1354)
..-|+..+. ..||||-+.||+ || |+...+++++-..|++ + .+ +.-.+||||||||.-+|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~-l---~d-------ryLd~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED-L---SD-------RYLDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc-h---HH-------HhHHhcccchhhhhhhh
Confidence 888887764 569999999996 33 3345566666555432 1 11 34457999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 732 Ral~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
..+++|.|.++||||+++||.+....+++.+.+... -|||+|+|-||+++.+. +|+|+-|++|+++.+|+++|++..
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 999999999999999999999999999987766543 48999999999999986 899999999999999999999854
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=281.69 Aligned_cols=179 Identities=26% Similarity=0.381 Sum_probs=155.8
Q ss_pred CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCCCCCCCcHH
Q 000680 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIR 675 (1354)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~yv~Q~~~~~~~ti~ 675 (1354)
+.++|+++||++.+||..+|+||+|||||||+++++-+..|++|++.+.| +|+||.|.|-+|.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 46799999999999999999999999999999999999999999999988 49999999999999999
Q ss_pred HHHhcCC-----CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q 000680 676 DNILYGK-----PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV 750 (1354)
Q Consensus 676 eni~~g~-----~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~l 750 (1354)
||+.|.. ..|.......++..++.+ +.+.++..+||||+|||++|+|-|---|+|+|||||||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~----------~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPD----------SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCch----------hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 9999963 345555555555444432 3445788899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHh-cCCcEEEEEcCCcch-hhhcCEEEEEeCCeEE
Q 000680 751 DAHTAATLFNECVMAA-LEKKTVILVTHQVEF-LSEVDRILVLEGGQIT 797 (1354)
Q Consensus 751 D~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~ 797 (1354)
|+++.+.|-+.+.+.. .++..++.||||.+. +.++|+++-+..|++-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 9999999876665554 467899999999988 7889999999998764
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=306.77 Aligned_cols=187 Identities=22% Similarity=0.298 Sum_probs=155.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEE
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAY 662 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----------~i~y 662 (1354)
..++++|++++|+. +++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|
T Consensus 10 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 10 PLLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred ceEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 46899999999963 3699999999999999999999999999999999999999999999987 2899
Q ss_pred EeCCCCCCC-CcHHHHHhcCCCC----CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 000680 663 VSQTSWIQS-GSIRDNILYGKPM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1354)
Q Consensus 663 v~Q~~~~~~-~ti~eni~~g~~~----~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1354)
++|++.++. .|++||+.++... .+++.++.++..++.+. ...+..+||||||||++||||++.+
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-----------EDTLVRQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-----------ccCChhhCCHHHHHHHHHHHHHhcC
Confidence 999987665 4999999764321 12233344444443322 2356678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeC
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG 793 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~ 793 (1354)
|++++|||||++||+...+.+.+.+.....+++|+|++||+++.+.+ +|++++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999887665555568999999999999876 799999864
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=310.33 Aligned_cols=208 Identities=24% Similarity=0.399 Sum_probs=166.4
Q ss_pred EEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-C----CCcEEEEcC----------
Q 000680 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-K----ISGTVNLYG---------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-~----~~G~i~~~g---------- 658 (1354)
++++|.+.+|.... ...+++||||++++||+++|||.+||||||+.++|+|+++ + .+|+|.++|
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 46888888886542 3579999999999999999999999999999999999998 3 578998876
Q ss_pred -------eEEEEeCCCCC---CCCcHHHHHh----cCCCC--C---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCC
Q 000680 659 -------SIAYVSQTSWI---QSGSIRDNIL----YGKPM--D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1354)
Q Consensus 659 -------~i~yv~Q~~~~---~~~ti~eni~----~g~~~--~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~ 719 (1354)
.|||++|+|.- +-.||.+-+. ..... . .++..+.++..++.+.- ..+...+.+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~--------~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPE--------RRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHH--------HHHhhCCcc
Confidence 49999999842 3346655443 22221 1 22344444555543221 123467789
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEE
Q 000680 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1354)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1354)
|||||||||.||.|+..+|+++|.||||+|||..++.+|.+.+.+... .|.|+|+||||+..+.+ ||||+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999886655443 68999999999999876 8999999999999
Q ss_pred EecChHHHHhcCc
Q 000680 798 QSGNYQELLLAGT 810 (1354)
Q Consensus 798 ~~g~~~~l~~~~~ 810 (1354)
|.|+.+++.++..
T Consensus 234 E~g~~~~i~~~P~ 246 (316)
T COG0444 234 EEGPVEEIFKNPK 246 (316)
T ss_pred EeCCHHHHhcCCC
Confidence 9999999987654
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=312.42 Aligned_cols=198 Identities=24% Similarity=0.309 Sum_probs=154.8
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCc--cCCCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~--~~~~G~i~~~g-------------- 658 (1354)
++++|+++.|+. .++++|+||+|++||+++|+|+||||||||+++|+|+. +|++|+|.++|
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 688999999973 46999999999999999999999999999999999995 69999998876
Q ss_pred eEEEEeCCCCCCC-CcHHHHHhcCC-------C---CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCC-CCCCh
Q 000680 659 SIAYVSQTSWIQS-GSIRDNILYGK-------P---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRG-LNLSG 722 (1354)
Q Consensus 659 ~i~yv~Q~~~~~~-~ti~eni~~g~-------~---~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g-~~LSg 722 (1354)
.++|++|++.++. .|..+++.+.. . .+. ++.++.++..+ ++.+..+ ..+ .+|||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~---~~~~~~LS~ 148 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK-------MPEDLLT---RSVNVGFSG 148 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcC-------CChhhcc---cCCCCCCCH
Confidence 2899999987543 35555543211 0 010 11122222222 2222222 233 37999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh--cCEEEEEeCCeEEEec
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE--VDRILVLEGGQITQSG 800 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~g 800 (1354)
|||||++||||++++|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++++.. +|+|++|++|++++.|
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999877554444457899999999999886 7999999999999999
Q ss_pred ChHHH
Q 000680 801 NYQEL 805 (1354)
Q Consensus 801 ~~~~l 805 (1354)
+++..
T Consensus 229 ~~~~~ 233 (248)
T PRK09580 229 DFTLV 233 (248)
T ss_pred CHHHH
Confidence 98854
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=304.19 Aligned_cols=182 Identities=24% Similarity=0.335 Sum_probs=152.1
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| +++|
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE
Confidence 678999999963 4699999999999999999999999999999999999999999999876 4899
Q ss_pred EeCCCCCC-CCcHHHHHhcCCCC--CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCC
Q 000680 663 VSQTSWIQ-SGSIRDNILYGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 663 v~Q~~~~~-~~ti~eni~~g~~~--~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ 739 (1354)
++|++.++ ..|++||+.++... ++.+..+.++..++.+. .+.+..+||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-----------IDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-----------hhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99998774 68999999986321 22334444444444321 124556899999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEE
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILV 790 (1354)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~ 790 (1354)
+++|||||++||+.+.+.+.+.+.....+++|+|++||+.+.+.++|.-++
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999887665544568999999999999999997553
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=303.55 Aligned_cols=172 Identities=28% Similarity=0.369 Sum_probs=148.8
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCC--ccCCCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~--~~~~~G~i~~~g-------------- 658 (1354)
++++|++++|+. .++++|+||++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 468899999973 4699999999999999999999999999999999999 479999999876
Q ss_pred eEEEEeCCCCCCC-CcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC
Q 000680 659 SIAYVSQTSWIQS-GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1354)
Q Consensus 659 ~i~yv~Q~~~~~~-~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~ 737 (1354)
.++|++|++.+++ .++++|+ . ....+||||||||++||||++++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l------------------------~-----------~~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL------------------------R-----------YVNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH------------------------h-----------hccccCCHHHHHHHHHHHHHhcC
Confidence 2999999987665 4666665 0 11247999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhh--hcCEEEEEeCCeEEEecChHHH
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS--EVDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~--~~d~i~~l~~G~i~~~g~~~~l 805 (1354)
|++++|||||++||+.+.+.+.+.+.+...+++|+|++||+++.+. .+|++++|++|++.+.| ..|+
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~ 191 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKEL 191 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHH
Confidence 9999999999999999999988766554445889999999999987 58999999999999998 4444
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=302.94 Aligned_cols=183 Identities=25% Similarity=0.367 Sum_probs=155.8
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| +++|
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEE
Confidence 468999999964 4689999999999999999999999999999999999999999998876 4899
Q ss_pred EeCCCCCC-CCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 663 VSQTSWIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 663 v~Q~~~~~-~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
++|++.++ +.|++||+.+..+ .++++.+++++..++....+ .+..+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-----------RPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99998764 6899999987643 34556677777777764332 45678999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEE
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVL 791 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l 791 (1354)
+||||||++||+...+++.+.+.....+|+|+|++||+...+.. +|+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999887665544568999999999887665 6888776
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=299.38 Aligned_cols=178 Identities=28% Similarity=0.444 Sum_probs=141.8
Q ss_pred EEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCCcHH
Q 000680 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIR 675 (1354)
Q Consensus 596 ~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~~~~ti~ 675 (1354)
+++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|.- +.+ ......+
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~--~~~---~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD--LAS---LSPKELA 72 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE--CCc---CCHHHHH
Confidence 46899999964 469999999999999999999999999999999999999999999998730 000 0001122
Q ss_pred HHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHH
Q 000680 676 DNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1354)
Q Consensus 676 eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~ 755 (1354)
..+.+- .++++.+++.+.++ .++.+||||||||++||||++.+|+++||||||++||+.+.
T Consensus 73 ~~i~~~--------~q~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 133 (180)
T cd03214 73 RKIAYV--------PQALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133 (180)
T ss_pred HHHhHH--------HHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 222211 11666667765433 45678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 756 ATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 756 ~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
+.+.+.+.....+ ++|+|++||+++++.. +|++++|++|++++.|
T Consensus 134 ~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 134 IELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9987765544344 7899999999999865 8999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=347.17 Aligned_cols=205 Identities=19% Similarity=0.322 Sum_probs=168.0
Q ss_pred CcEEEEeeEEEeCCC--------CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000680 593 RSVKIQEGNFSWDPE--------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~--------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------ 658 (1354)
..++++|+++.|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 358999999999631 12469999999999999999999999999999999999985 899999876
Q ss_pred ----------eEEEEeCCCC--C-CCCcHHHHHhcCCC-----CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCC
Q 000680 659 ----------SIAYVSQTSW--I-QSGSIRDNILYGKP-----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1354)
Q Consensus 659 ----------~i~yv~Q~~~--~-~~~ti~eni~~g~~-----~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~ 716 (1354)
+++|++|++. + .+.|++||+.++.. .+. ++..+.++..++..+. ...+
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~ 422 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPET----------RHRY 422 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHH----------HhcC
Confidence 2899999972 4 45799999987521 121 2334445555553211 2356
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCC
Q 000680 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1354)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1354)
..+|||||||||+||||++.+|+++||||||++||+.+.+.+++.+..... .|+|+|+||||++++.. ||+|++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 778999999999999999999999999999999999999999886665544 38899999999999876 8999999999
Q ss_pred eEEEecChHHHHhc
Q 000680 795 QITQSGNYQELLLA 808 (1354)
Q Consensus 795 ~i~~~g~~~~l~~~ 808 (1354)
++++.|+.+++.+.
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999988653
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=347.79 Aligned_cols=203 Identities=19% Similarity=0.308 Sum_probs=165.4
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc-CCCcEEEEcC-------------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-KISGTVNLYG------------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~-~~~G~i~~~g------------- 658 (1354)
..++++|+++.|+...+.++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 35899999999853223469999999999999999999999999999999999998 5999999876
Q ss_pred -eEEEEeCCC---CC-CCCcHHHHHhcCCC--C------CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 659 -SIAYVSQTS---WI-QSGSIRDNILYGKP--M------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 659 -~i~yv~Q~~---~~-~~~ti~eni~~g~~--~------~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
.++|++|++ .+ .+.|+.||+.++.. + +. ++.++.++.+++.. + ....+..+||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~--~~~~~~~~LS 407 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT--------A--SPELAIARLS 407 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC--------C--CcccccccCC
Confidence 289999996 34 46799999987521 1 11 12233333333311 0 1235678999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEec
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g 800 (1354)
|||||||+||||+..+|+++||||||++||+.+.+.+++.+.....+|+|+|++|||++++.. ||++++|++|+++..|
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999987666555568999999999999876 8999999999999999
Q ss_pred ChHHH
Q 000680 801 NYQEL 805 (1354)
Q Consensus 801 ~~~~l 805 (1354)
+.+++
T Consensus 488 ~~~~~ 492 (506)
T PRK13549 488 INHNL 492 (506)
T ss_pred ccccC
Confidence 88775
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=344.92 Aligned_cols=209 Identities=22% Similarity=0.367 Sum_probs=167.9
Q ss_pred CcEEEEeeEEEeCC--CCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc-C-----------
Q 000680 593 RSVKIQEGNFSWDP--ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-G----------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~--~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~-g----------- 658 (1354)
..++++|++++|+. +...++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++ |
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 35999999999963 122469999999999999999999999999999999999999999999984 3
Q ss_pred --------eEEEEeCCCCCC-CCcHHHHHhcCCC--CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 --------SIAYVSQTSWIQ-SGSIRDNILYGKP--MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 --------~i~yv~Q~~~~~-~~ti~eni~~g~~--~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
+++|++|++.++ +.|++||+.++.. ... ++..+.++.+++.... .......+..+||||
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDELSEG 431 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhhCCHH
Confidence 289999998655 4699999986321 111 1233344444442100 000124667899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|||||+||||++.+|+++||||||++||+...+.+.+.+..... .|+|+|+||||++++.. ||++++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999876655443 38999999999999876 89999999999999999
Q ss_pred hHHHHh
Q 000680 802 YQELLL 807 (1354)
Q Consensus 802 ~~~l~~ 807 (1354)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 888753
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=290.49 Aligned_cols=160 Identities=26% Similarity=0.418 Sum_probs=131.5
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-EEEEeCCCCCCCCc
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAYVSQTSWIQSGS 673 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~-i~yv~Q~~~~~~~t 673 (1354)
++++|++++|+. .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|. +. + .+
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~---~------~~ 68 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS---F------AS 68 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC---c------CC
Confidence 468999999963 36999999999999999999999999999999999999999999999873 11 0 00
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHH
Q 000680 674 IRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753 (1354)
Q Consensus 674 i~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~ 753 (1354)
.++ .+. ..+... ..||||||||++||||++++|++++|||||++||+.
T Consensus 69 ~~~-----------~~~---------~~i~~~------------~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~ 116 (163)
T cd03216 69 PRD-----------ARR---------AGIAMV------------YQLSVGERQMVEIARALARNARLLILDEPTAALTPA 116 (163)
T ss_pred HHH-----------HHh---------cCeEEE------------EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 000 000 000000 019999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEE
Q 000680 754 TAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1354)
Q Consensus 754 ~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1354)
+.+++.+.+.....+++|+|++||+++.+.. +|++++|++|++++
T Consensus 117 ~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 117 EVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999887665554568999999999998876 89999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=309.34 Aligned_cols=192 Identities=23% Similarity=0.336 Sum_probs=156.5
Q ss_pred EEeCCCCCCCcceeeeEEee-----CCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-eEEEEeCCCC-CCCCcH
Q 000680 602 FSWDPELAIPTLRGVNLDIK-----WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSW-IQSGSI 674 (1354)
Q Consensus 602 f~~~~~~~~~~l~~i~l~i~-----~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-~i~yv~Q~~~-~~~~ti 674 (1354)
|+|++. ...++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++| +|+|++|++. .++.|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTV 78 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCH
Confidence 567643 347888888887 6899999999999999999999999999999999999 8999999986 467899
Q ss_pred HHHHhcCCC-C--CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcC
Q 000680 675 RDNILYGKP-M--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751 (1354)
Q Consensus 675 ~eni~~g~~-~--~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD 751 (1354)
+||+.+... . ...+..++++.+++.+.+ ..++.+||||||||++||||++.+|+++||||||++||
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQIL-----------DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999975422 1 123345566666665433 25667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEE--EecChHHHH
Q 000680 752 AHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT--QSGNYQELL 806 (1354)
Q Consensus 752 ~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~--~~g~~~~l~ 806 (1354)
+.+.+.+.+.+..... +++|+|+|||+++.+.. ||+|++|+++..+ ..++++++.
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 148 VEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999998776554433 47999999999999886 8999999775444 556666654
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=300.32 Aligned_cols=184 Identities=23% Similarity=0.300 Sum_probs=156.2
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC----------eEEEEe
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYVS 664 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g----------~i~yv~ 664 (1354)
++++|+++.|+. ..+++|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG 79 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEec
Confidence 789999999963 3589999999999999999999999999999999999999999999887 379999
Q ss_pred CCCCC-CCCcHHHHHhcCCC---CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 665 QTSWI-QSGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 665 Q~~~~-~~~ti~eni~~g~~---~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
|++.+ ++.|++||+.+... .++++..++++..++.+..+ .+..+||||||||++||||++++|++
T Consensus 80 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 80 HRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-----------LPFGYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-----------CChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 87654 57899999976432 23445666777777754332 34568999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeC
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1354)
++|||||++||+.+.+.+.+.+.....+|+|+|++||+++.++. |+++.++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999987665545568999999999999988 99887744
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=351.75 Aligned_cols=196 Identities=27% Similarity=0.373 Sum_probs=162.7
Q ss_pred CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEEcCe----------EEEEeCCCCCC-CCc
Q 000680 608 LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYGS----------IAYVSQTSWIQ-SGS 673 (1354)
Q Consensus 608 ~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~---~G~i~~~g~----------i~yv~Q~~~~~-~~t 673 (1354)
.++++|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|. +|||+|+++++ +.|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999999874 799999883 69999999876 569
Q ss_pred HHHHHhcCCCCCH----HHHHHHHHHhccHHHHhcC--CCCCcccccCC--CCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 674 IRDNILYGKPMDK----ARYDKAIKACALDKDINNF--DHGDLTEIGQR--GLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 674 i~eni~~g~~~~~----~~~~~~~~~~~l~~~l~~l--~~gd~t~ig~~--g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
|+||+.|+..... .+.++. ...++.++.+ ++..+|.+|+. +..|||||||||+||||++.+|++++|||
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~---~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKR---ERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHH---HHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 9999998643210 011111 1122233332 33457889974 57899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcc-h-hhhcCEEEEEeCCeEEEecChHHHH
Q 000680 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE-F-LSEVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~-~-l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
||||||++++.++.+.+.+...+|+|+|+++|+++ . .+.+|++++|++|++++.|+++++.
T Consensus 193 PtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999999887776667999999999996 4 4568999999999999999999875
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=296.64 Aligned_cols=184 Identities=26% Similarity=0.453 Sum_probs=163.0
Q ss_pred eeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------------eEEEEeCCCCCC-CCcHHH
Q 000680 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQ-SGSIRD 676 (1354)
Q Consensus 615 ~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------------~i~yv~Q~~~~~-~~ti~e 676 (1354)
++||+.+.-.++||-|++|||||||+++|.|+.+|++|.|.++| +||||+|+.-+| +.||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 68888888789999999999999999999999999999999987 499999999875 679999
Q ss_pred HHhcCCCCC-HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHH
Q 000680 677 NILYGKPMD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1354)
Q Consensus 677 ni~~g~~~~-~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~ 755 (1354)
|+.||.... ...++++++..++.+-+++. +.+|||||||||+|+|||..+|+++|||||+|+||....
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~-----------P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRY-----------PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhC-----------CCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 999998754 66788888888888877754 568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-CcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 756 ATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 756 ~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
++|.-.+-+...+ +--++.|||.++++.+ ||+|++|++|++...|..+++..+.
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 9987765444332 5679999999998765 9999999999999999999998654
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=306.31 Aligned_cols=179 Identities=30% Similarity=0.456 Sum_probs=149.5
Q ss_pred EEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------eEEEEeCCCCC---CCCcHHHHHhcCCC---
Q 000680 618 LDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQTSWI---QSGSIRDNILYGKP--- 683 (1354)
Q Consensus 618 l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------~i~yv~Q~~~~---~~~ti~eni~~g~~--- 683 (1354)
|++++||+++|+|+||||||||+++|+|.++|++|+|.++| .++|++|++.+ ++.|++||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 57899999999999999999999999999999999999988 39999999854 35799999987521
Q ss_pred --C--C----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHH
Q 000680 684 --M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1354)
Q Consensus 684 --~--~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~ 755 (1354)
+ . .++..++++.+++.+.. ..+..+||||||||++||||++.+|++++|||||++||+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELA-----------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1 1 12344445555553322 245678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 756 ATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 756 ~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
+.+.+.+.....+|+|+|++||+++.+.. ||+++++ +|++++.|+++++.++
T Consensus 150 ~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 150 ELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 99988766554568999999999998875 8999999 8999999999988653
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=350.93 Aligned_cols=206 Identities=19% Similarity=0.292 Sum_probs=175.6
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------ 658 (1354)
.+..++++|+++.|+.+ .+++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 1934 ~~~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~ 2012 (2272)
T TIGR01257 1934 KTDILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQ 2012 (2272)
T ss_pred CCceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhh
Confidence 34579999999999742 25699999999999999999999999999999999999999999999987
Q ss_pred eEEEEeCCCCCC-CCcHHHHHhcCC---CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 SIAYVSQTSWIQ-SGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ~i~yv~Q~~~~~-~~ti~eni~~g~---~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.||||||++.++ +.|++||+.+.. ...+ ++.+++++.++|.+..+ ++..+||||||||+++
T Consensus 2013 ~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-----------k~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2013 NMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-----------RLAGTYSGGNKRKLST 2081 (2272)
T ss_pred hEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHH
Confidence 389999997665 679999997631 1222 23445566666654332 5667899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|||++.+|++++|||||+|||+..++.+++.+.+...+|+|+|++||+++++.. ||||++|++|+++..|+.+++.++
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999999999999999998766555568999999999999876 899999999999999999998653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=305.60 Aligned_cols=187 Identities=24% Similarity=0.350 Sum_probs=150.8
Q ss_pred EEEEeeEEEeCCC----CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc--C----------
Q 000680 595 VKIQEGNFSWDPE----LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--G---------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~----~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~--g---------- 658 (1354)
++++|+++.|+.. ...++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6789999999631 12468999999999999999999999999999999999999999999886 3
Q ss_pred ---------eEEEEeCCCCCC-CCcHHHHHhcCC---CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 659 ---------SIAYVSQTSWIQ-SGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 659 ---------~i~yv~Q~~~~~-~~ti~eni~~g~---~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
.++|++|++.++ +.|++||+.++. ..+. ++..++++..++.++. ...++.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL----------WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh----------hhCCcccCC
Confidence 389999998764 569999997631 1222 2223333333332211 124577899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEE
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVL 791 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l 791 (1354)
||||||++||||++.+|++++|||||++||+++.+.+.+.+.....+|+|+|++||+.+++.. ||+++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999887665544568999999999998864 8999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-29 Score=294.27 Aligned_cols=452 Identities=17% Similarity=0.197 Sum_probs=295.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHH---HHHHhHHHHHhhHH-HHHHHHHHHHHHHH
Q 000680 331 ESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIV---NYIAVDAYRMGEFP-FWFHLTWSLALQLF 406 (1354)
Q Consensus 331 ~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~iv---Nlms~D~~~i~~~~-~~~~~~w~~plqi~ 406 (1354)
.+....-..|...-+..|.|.-++.-+|++=++-..--+-....+.|. .+++.|++++.... .....+-.+|+.++
T Consensus 135 ~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~ 214 (659)
T KOG0060|consen 135 ISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLV 214 (659)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeee
Confidence 344445556778889999999999999998886322110001111222 36788998876533 33445556777777
Q ss_pred HHHHHHHHHHhHHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHH
Q 000680 407 LAIGVLFGVVGLGALPGLVL-FLICGLL----NVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSL 481 (1354)
Q Consensus 407 ~~~~~L~~~lG~~~l~gl~v-~~i~~~l----~~~~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~ 481 (1354)
.-.+.+|...||...+.+.. +++...+ ..|+.+++...|+.. -|-|-+. +++..|-..|-+|+-+..-...
T Consensus 215 ~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklE---GdfRy~h-~rlr~NaE~iAFY~g~~~E~~~ 290 (659)
T KOG0060|consen 215 YYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLE---GDFRYKH-SRLRVNAEEIAFYRGGQVEHQR 290 (659)
T ss_pred hhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhh---cchhhhe-eeeeecchhhhhhccCchHHHH
Confidence 77777777666533222211 1111222 233444444433332 3444433 2344556778899887665555
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HHHHHH-HHHHHHhCCCCCCHHHHHHHHH----HHHHHHHHH
Q 000680 482 IESRREKEFKWLSEAQLRKA----YGTVIYWMSPT---IISSVI-FLGCALTGSAPLNASTIFTVLA----TLRSMGEPV 549 (1354)
Q Consensus 482 i~~~R~~El~~l~~~~~~~~----~~~~~~~~~p~---~v~~~~-f~~~~l~~~~~Lt~~~~Ft~l~----lf~~l~~pl 549 (1354)
+++.=+.=++.+++....+. +..++-+...+ ++.... |.+. . ...++++..++-++ .+.-+...+
T Consensus 291 ~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h--~-y~~~s~aEL~~~i~~na~~~i~Li~~f 367 (659)
T KOG0060|consen 291 TDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGH--V-YDDLSPAELSGLISNNAFVFIYLISAF 367 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeeccc--c-cCCcCHHHHHHHHhhhHHHHHHHHHHH
Confidence 54433333344443322111 11111111111 011111 1111 1 13567776655443 234444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cCCC-------------cchhhh-------ccccCCCCcEEEEeeEEEeCCCC
Q 000680 550 RMIPEALSIMIQVKVSFDRINAFLLD-HELN-------------NDDVRR-------ISLQKSDRSVKIQEGNFSWDPEL 608 (1354)
Q Consensus 550 ~~lp~~i~~~~~a~vS~~Ri~~fL~~-~e~~-------------~~~~~~-------~~~~~~~~~i~~~~~~f~~~~~~ 608 (1354)
..+...-..+.+-..=..||.++.+. ++.. .+...+ ......+..|++++++++-|++
T Consensus 368 ~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~- 446 (659)
T KOG0060|consen 368 GRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN- 446 (659)
T ss_pred HHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-
Confidence 55555555555555567788887641 1100 000000 0112245789999999998876
Q ss_pred CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc--C---eEEEEeCCCCCCCCcHHHHHhcCC-
Q 000680 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--G---SIAYVSQTSWIQSGSIRDNILYGK- 682 (1354)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~--g---~i~yv~Q~~~~~~~ti~eni~~g~- 682 (1354)
...+.+|+||+|+.|+-+.|+||||||||||++.+.|+.+..+|++... | .+-|+||.|...-||.||-+.+..
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~ 526 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLK 526 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCc
Confidence 4567888999999999999999999999999999999999999999864 3 499999999999999999999972
Q ss_pred -------CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHH
Q 000680 683 -------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755 (1354)
Q Consensus 683 -------~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~ 755 (1354)
..+.++..+.++..+|.+-+++...=|+..+-+-...||+|||||+++||-+|++|++-+|||.|||||.+++
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE 606 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVE 606 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHH
Confidence 1356788899999999887776654444444566789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeC
Q 000680 756 ATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1354)
Q Consensus 756 ~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1354)
..+++.|. ..|.|.|-|.|+.+.-+.-|.++-|+.
T Consensus 607 ~~~Yr~~r---~~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 607 GALYRKCR---EMGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHH---HcCCeEEEeccHHHHHhhhhEEEEecC
Confidence 99998774 357899999999998888899999976
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=339.95 Aligned_cols=200 Identities=24% Similarity=0.382 Sum_probs=168.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCC--
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-- 668 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~-- 668 (1354)
..++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++||++|++.
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 394 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYD 394 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccccc
Confidence 46999999999963 3589999999999999999999999999999999999999999999987 6999999974
Q ss_pred CC-CCcHHHHHhcCC--CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 669 IQ-SGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 669 ~~-~~ti~eni~~g~--~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
++ +.|++||+.+.. ..++++.++.++..++..+. ...++.+||||||||++||||++++|+++||||
T Consensus 395 ~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 464 (530)
T PRK15064 395 FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDD----------IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464 (530)
T ss_pred CCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhH----------hcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 33 479999986521 22344556666666663221 125678999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE-EecChHHHHhc
Q 000680 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELLLA 808 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~~~ 808 (1354)
||++||+.+.+.+.+.+.. . +.|+|+||||++++.. ||++++|++|+++ +.|+++++.+.
T Consensus 465 Pt~~LD~~~~~~l~~~l~~-~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 465 PTNHMDMESIESLNMALEK-Y--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCCCCHHHHHHHHHHHHH-C--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999998875543 2 4599999999999876 8999999999998 88999888654
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=296.56 Aligned_cols=179 Identities=19% Similarity=0.267 Sum_probs=150.6
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEeC
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------~i~yv~Q 665 (1354)
++++|++++|+. +.++ ++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++| .++|++|
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccC
Confidence 678999999963 3344 59999999999999999999999999999999999999999987 2899999
Q ss_pred CCCC-CCCcHHHHHhcCCCC--CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 000680 666 TSWI-QSGSIRDNILYGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1354)
Q Consensus 666 ~~~~-~~~ti~eni~~g~~~--~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ill 742 (1354)
++.+ ++.|++||+.++... ..++..++++.+++.+.. .+++.+||||||||++||||++++|++++
T Consensus 78 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLL-----------DEKCYSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred CcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhh-----------ccChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8754 678999999875432 234556666666665433 25677999999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEE
Q 000680 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRI 788 (1354)
Q Consensus 743 LDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i 788 (1354)
|||||++||+.+.+.+.+.+.....+++|+|++||+++.++.+|-+
T Consensus 147 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 9999999999999988776543445689999999999999998865
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=296.10 Aligned_cols=180 Identities=25% Similarity=0.315 Sum_probs=148.0
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------eEEE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------~i~y 662 (1354)
++++|+++.|+. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEE
Confidence 468899999963 4689999999999999999999999999999999999999999999877 3799
Q ss_pred EeCCCCCC-CCcHHHHHhcCCCC---CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000680 663 VSQTSWIQ-SGSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 663 v~Q~~~~~-~~ti~eni~~g~~~---~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1354)
++|++.++ +.|++||+.+.... ++++..++++..++.+.++ .+..+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-----------LPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-----------CChhhcCHHHHHHHHHHHHHhcCC
Confidence 99998765 47999999764321 2334566666666654432 456789999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEE
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1354)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1354)
++++|||||++||+.+.+.+.+.+.....+|+|+|++||+...+.. ++++
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~ 196 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE-AREL 196 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-eEEe
Confidence 9999999999999999998877665544568899999999854332 4443
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=340.14 Aligned_cols=198 Identities=18% Similarity=0.349 Sum_probs=158.9
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 589999998652 379999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCC----CCCCCcHHHHHhcCCCC------------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 660 IAYVSQTS----WIQSGSIRDNILYGKPM------------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 660 i~yv~Q~~----~~~~~ti~eni~~g~~~------------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
++|++|++ .+.+.|++||+.++... ...... ....+-++.+.... .....+..+||||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~-~~~~~~~~~LSgG 413 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQ-----RTAENQRELLALKC-HSVNQNITELSGG 413 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHH-----HHHHHHHHhcCCCC-CCccCccccCChH
Confidence 89999984 34467999999876321 111100 11122233332210 0134667899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecCh
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 802 (1354)
|||||+||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++.+.. ||++++|++|++++.++.
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999999999999987665554568999999999998875 899999999999987765
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-32 Score=295.77 Aligned_cols=161 Identities=27% Similarity=0.413 Sum_probs=134.8
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------eEEEEeCCC--CCCCC
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------SIAYVSQTS--WIQSG 672 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------------~i~yv~Q~~--~~~~~ 672 (1354)
+++|+|+||+|++||+++|+||||||||||+++|+|..+|++|+|.++| .++|++|+| .+++.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 4689999999999999999999999999999999999999999998865 389999998 46778
Q ss_pred cHHHHHhcCC---CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 673 SIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 673 ti~eni~~g~---~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
|++||+.++. ..+. ++..++++..++.+.. .++..+||||||||++||||++.+|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR-----------ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999998752 1222 2344455555554332 24567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcch
Q 000680 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~ 781 (1354)
||++||+.+.+.+.+.+.....+|+|+|++||++++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999887765554568999999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.6e-32 Score=341.53 Aligned_cols=191 Identities=26% Similarity=0.358 Sum_probs=159.3
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC--CcEEEEcC---------eEEEEeCCCCCC-CCcHHHH
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI--SGTVNLYG---------SIAYVSQTSWIQ-SGSIRDN 677 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~--~G~i~~~g---------~i~yv~Q~~~~~-~~ti~en 677 (1354)
+++|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.++| ++|||+|++.++ ..||+||
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 160 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET 160 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence 56999999999999999999999999999999999999885 89999987 389999998876 5699999
Q ss_pred HhcCC------CCCHH----HHHHHHHHhccHHHHhcCCCCCcccccC-CCCCCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000680 678 ILYGK------PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQ-RGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1354)
Q Consensus 678 i~~g~------~~~~~----~~~~~~~~~~l~~~l~~l~~gd~t~ig~-~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1354)
+.|.. ..+++ +.+++++..+|. +..+|.+|+ .+..||||||||++||||++++|++++||||
T Consensus 161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEP 233 (659)
T PLN03211 161 LVFCSLLRLPKSLTKQEKILVAESVISELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233 (659)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCC
Confidence 98742 12222 223333333332 233566765 4678999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcch-h-hhcCEEEEEeCCeEEEecChHHHHh
Q 000680 747 FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-L-SEVDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l-~~~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
|++||+.++.++.+.+.+...+|+|+|++||+++. + +.+|+|++|++|++++.|+.+++.+
T Consensus 234 tsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 234 TSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999988766555578999999999984 5 4589999999999999999998863
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-32 Score=339.53 Aligned_cols=201 Identities=21% Similarity=0.288 Sum_probs=161.8
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-CCcEEEEcC--------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-ISGTVNLYG-------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-~~G~i~~~g-------------- 658 (1354)
.++++|+++.|+.+.+..+|+|+||+|++||+++|+||||||||||+++|+|..+| ++|+|.++|
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 58999999988432224689999999999999999999999999999999999985 899999876
Q ss_pred eEEEEeCCC----CCCCCcHHHHHhcCCC--------CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 659 SIAYVSQTS----WIQSGSIRDNILYGKP--------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 659 ~i~yv~Q~~----~~~~~ti~eni~~g~~--------~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
+++|++|++ .+++.|++||+.++.. .+. ++.++.++.+++.. + ....+..+|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~--~~~~~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT--------A--SPFLPIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC--------C--CccCccccCCH
Confidence 289999996 3456799999987531 111 12223333333211 0 12356778999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|||||++||||++.+|+++||||||++||+.+.+.+++.+.....+|+|+|++|||++++.. ||++++|++|+++..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999887665555568999999999999876 89999999999998765
Q ss_pred hHH
Q 000680 802 YQE 804 (1354)
Q Consensus 802 ~~~ 804 (1354)
.++
T Consensus 487 ~~~ 489 (500)
T TIGR02633 487 NHA 489 (500)
T ss_pred ccc
Confidence 443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-32 Score=285.94 Aligned_cols=205 Identities=23% Similarity=0.390 Sum_probs=176.1
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------eEEEEe
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVS 664 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g---------~i~yv~ 664 (1354)
.+++++++.+++. ..+++|+||++++|++.+++|+||+||||.+++|+|+++|++|+|.++| +|||.|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLP 78 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLP 78 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccCh
Confidence 4789999999974 4699999999999999999999999999999999999999999999998 799999
Q ss_pred CCCCC-CCCcHHHHHhcCC---CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000680 665 QTSWI-QSGSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1354)
Q Consensus 665 Q~~~~-~~~ti~eni~~g~---~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~i 740 (1354)
.+.-+ +..||.|-+.|-. .+++...++-+ ...++++.-.+. -.++..+||-|.+|+|.+--|++++|++
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~~~-----~~wLer~~i~~~--~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL-----QAWLERLEIVGK--KTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCcHHHHHHHH-----HHHHHhcccccc--ccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 99766 5789999998732 24444333332 233444433222 1367889999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 741 llLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
++||||||||||.+.+.+-+.++....+|+|||++||+++.++. ||++++|++|+.+-+|+.+++.++
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 99999999999999999888888888899999999999999987 999999999999999999998764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-32 Score=336.66 Aligned_cols=196 Identities=22% Similarity=0.344 Sum_probs=160.6
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 5788888742 489999999999999999999999999999999999999999999876 2
Q ss_pred EEEEeCCC----CCCCCcHHHHHhcCCCC---------CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 660 IAYVSQTS----WIQSGSIRDNILYGKPM---------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 660 i~yv~Q~~----~~~~~ti~eni~~g~~~---------~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
++|++|++ .+.+.|+.||+.++... +. ++.++.++.+++.. + ....+..+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~--~~~~~~~~LSg 399 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT--------P--SREQLIMNLSG 399 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc--------C--CccCccccCCH
Confidence 79999997 34568999999875310 11 12223333333311 1 12356789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|.|+|+||||++++.. ||++++|++|++++.|+
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999987665555568999999999999876 89999999999999998
Q ss_pred hHHHH
Q 000680 802 YQELL 806 (1354)
Q Consensus 802 ~~~l~ 806 (1354)
.+++.
T Consensus 480 ~~~~~ 484 (501)
T PRK11288 480 REQAT 484 (501)
T ss_pred cccCC
Confidence 87654
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=295.15 Aligned_cols=184 Identities=18% Similarity=0.224 Sum_probs=148.3
Q ss_pred cceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE-EcCeEEEEeCCCCCCC-CcHHHHHhcCC---CCCH
Q 000680 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-LYGSIAYVSQTSWIQS-GSIRDNILYGK---PMDK 686 (1354)
Q Consensus 612 ~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~-~~g~i~yv~Q~~~~~~-~ti~eni~~g~---~~~~ 686 (1354)
+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|. ++|....+.|++.+++ .|++||+.+.. ..+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 68999999999999999999999999999999999999999997 7776444556666654 69999998642 2333
Q ss_pred HHHHHHH-HHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHH
Q 000680 687 ARYDKAI-KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765 (1354)
Q Consensus 687 ~~~~~~~-~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~ 765 (1354)
++..+.+ +..++... ...+...||||||||++||||++.+|+++|||||++++|+.+.+.+.+.+.+.
T Consensus 82 ~~~~~~~~~~~~l~~~-----------~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~ 150 (213)
T PRK15177 82 DEFSHFCYQLTQLEQC-----------YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQ 150 (213)
T ss_pred HHHHHHHHHHhChhHH-----------hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHH
Confidence 3322222 22222211 12456789999999999999999999999999999999999999887755443
Q ss_pred hcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 766 ALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 766 ~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
.+++|+|++||+++.+.. ||++++|++|++++.|+.++..+
T Consensus 151 -~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 151 -LQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred -hhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 356799999999999875 89999999999999999888753
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-32 Score=336.08 Aligned_cols=194 Identities=23% Similarity=0.404 Sum_probs=159.6
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 588888873 369999999999999999999999999999999999999999999876 2
Q ss_pred EEEEeCCC---CC-CCCcHHHHHhcCCC---------CCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 660 IAYVSQTS---WI-QSGSIRDNILYGKP---------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 660 i~yv~Q~~---~~-~~~ti~eni~~g~~---------~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
+||++|+| .+ ++.|++||+.++.. .+. ++.+++++.+++.. + ..++++.+|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~--~~~~~~~~LSg 398 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT--------P--SMEQAIGLLSG 398 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC--------C--CccCchhhCCH
Confidence 89999997 23 56799999987521 111 11222333332210 1 13467789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++|||++++.. ||+|++|++|+++..|+
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999988766655568999999999999876 89999999999999998
Q ss_pred hHHH
Q 000680 802 YQEL 805 (1354)
Q Consensus 802 ~~~l 805 (1354)
.+++
T Consensus 479 ~~~~ 482 (501)
T PRK10762 479 REQA 482 (501)
T ss_pred cccC
Confidence 7765
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=305.06 Aligned_cols=207 Identities=23% Similarity=0.367 Sum_probs=144.4
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCC
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS 671 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~~~ 671 (1354)
...|.++|.++++.. .+.++|..|++.+|+.++|+|+|||||||+|++|.|-..|..-++. +....++.---.
T Consensus 73 s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d----~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID----FYLLSREIEPSE 145 (614)
T ss_pred cccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc----hhhhcccCCCch
Confidence 346899999999874 5689999999999999999999999999999999998888554432 233334321111
Q ss_pred C-cHHHHHhcCCC------CCHHHHHHHHHHhc---cHH---HHh--------------cCCCC-CcccccCCCCCCChH
Q 000680 672 G-SIRDNILYGKP------MDKARYDKAIKACA---LDK---DIN--------------NFDHG-DLTEIGQRGLNLSGG 723 (1354)
Q Consensus 672 ~-ti~eni~~g~~------~~~~~~~~~~~~~~---l~~---~l~--------------~l~~g-d~t~ig~~g~~LSgG 723 (1354)
. +++.-+.+... +..++|...++... +.. -++ ....| ......++..+||||
T Consensus 146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgG 225 (614)
T KOG0927|consen 146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGG 225 (614)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCch
Confidence 1 33333222110 00111111111000 000 000 00111 112234677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCc-EEEEEcCCcchhhh-cCEEEEEeCCe-EEEec
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSE-VDRILVLEGGQ-ITQSG 800 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~-tvilvtH~~~~l~~-~d~i~~l~~G~-i~~~g 800 (1354)
||.|++|||||..+|++|||||||++||.....++-+.+.. .++ ++|+++|..++++. |.+|+-|++++ +.+.|
T Consensus 226 wrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k---~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~G 302 (614)
T KOG0927|consen 226 WRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAK---YDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEG 302 (614)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHh---ccCceEEEEecchhhhhhHhhhhheecccceeeecC
Confidence 99999999999999999999999999999999998654432 234 89999999999998 89999999999 67899
Q ss_pred ChHHHHhc
Q 000680 801 NYQELLLA 808 (1354)
Q Consensus 801 ~~~~l~~~ 808 (1354)
+|+++...
T Consensus 303 nydqy~~t 310 (614)
T KOG0927|consen 303 NYDQYVKT 310 (614)
T ss_pred CHHHHhhH
Confidence 99998753
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=291.84 Aligned_cols=190 Identities=25% Similarity=0.328 Sum_probs=159.7
Q ss_pred cEEEEeeEEEeCCCC------CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeE-EEEeCC
Q 000680 594 SVKIQEGNFSWDPEL------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI-AYVSQT 666 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~------~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i-~yv~Q~ 666 (1354)
-++++|.+..|+... ...+++||||+|++||.++|||.|||||||+-++|+|+++|++|+|.++|+= .-..
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 467888888887532 1468999999999999999999999999999999999999999999998852 1111
Q ss_pred CCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000680 667 SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1354)
Q Consensus 667 ~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1354)
.....+++.+.++..++.++.. .+.+.+|||||||||++|||+.-+|+++++|||
T Consensus 82 ---------------~~~~~~~v~elL~~Vgl~~~~~----------~ryPhelSGGQrQRi~IARALal~P~liV~DEp 136 (268)
T COG4608 82 ---------------KEERRERVLELLEKVGLPEEFL----------YRYPHELSGGQRQRIGIARALALNPKLIVADEP 136 (268)
T ss_pred ---------------hhHHHHHHHHHHHHhCCCHHHh----------hcCCcccCchhhhhHHHHHHHhhCCcEEEecCc
Confidence 1123456778888888776543 356779999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcCc
Q 000680 747 FSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 810 (1354)
+|+||..++.+|.+.+.... ..|-|.+++|||++.+.+ +|+|.||..|+|++.|+.+++..+..
T Consensus 137 vSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~ 202 (268)
T COG4608 137 VSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPL 202 (268)
T ss_pred hhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCC
Confidence 99999999999887655443 348899999999999998 79999999999999999999987643
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=273.63 Aligned_cols=141 Identities=32% Similarity=0.507 Sum_probs=129.4
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCCCC
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~~~ 672 (1354)
++++|+++.|+. .++++++||++++||+++|+|+||||||||+++|.|+.+|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~------- 70 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ------- 70 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-------
Confidence 468899999964 3699999999999999999999999999999999999999999999998 5899998
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCH
Q 000680 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1354)
Q Consensus 673 ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~ 752 (1354)
||||||||++||||++++|++++||||+++||+
T Consensus 71 -----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 753 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
.+.+.+.+.+.. . ++|+|++||+++.+.. +|++++|++|+
T Consensus 104 ~~~~~l~~~l~~-~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 104 ESIEALEEALKE-Y--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHH-c--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999988765433 2 4799999999999876 79999999986
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=312.85 Aligned_cols=171 Identities=30% Similarity=0.405 Sum_probs=143.7
Q ss_pred EECCCCCCHHHHHHHHhCCccCCCcEEEEcC-----------eEEEEeCCCCCC-CCcHHHHHhcCCC---CCH----HH
Q 000680 628 VCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVSQTSWIQ-SGSIRDNILYGKP---MDK----AR 688 (1354)
Q Consensus 628 ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-----------~i~yv~Q~~~~~-~~ti~eni~~g~~---~~~----~~ 688 (1354)
|+||||||||||+++|+|+++|++|+|.++| +++|++|++.++ +.|++||+.|+.. .+. ++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999999999999999987 389999998876 4699999998642 222 23
Q ss_pred HHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-
Q 000680 689 YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL- 767 (1354)
Q Consensus 689 ~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~- 767 (1354)
.+++++.+++.+.+ .++..+|||||||||+||||++++|+++||||||++||+.+.+.+.+.+.....
T Consensus 81 ~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 81 VLEALRLVQLEEFA-----------DRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHcCCcchh-----------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 44455555554322 356678999999999999999999999999999999999999998877665444
Q ss_pred CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 768 EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 768 ~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
.|+|+|+|||+++++.. ||+|++|++|++++.|+++++.+..
T Consensus 150 ~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 150 LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 38999999999998765 8999999999999999999997653
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-31 Score=329.72 Aligned_cols=200 Identities=22% Similarity=0.342 Sum_probs=164.2
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCC-CC
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-WI 669 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~-~~ 669 (1354)
..++++|+++.|+. +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+.+ ++||+||++ .+
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 399 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 399 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhc
Confidence 46999999999963 4699999999999999999999999999999999999999999999965 599999996 44
Q ss_pred -CCCcHHHHHhcCCCC-----CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEE
Q 000680 670 -QSGSIRDNILYGKPM-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1354)
Q Consensus 670 -~~~ti~eni~~g~~~-----~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illL 743 (1354)
.+.|++||+.++... .+.+.+..++..++..+. ...+..+||||||||++||||++.+|+++||
T Consensus 400 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~la~al~~~p~lllL 469 (556)
T PRK11819 400 DPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD----------QQKKVGVLSGGERNRLHLAKTLKQGGNVLLL 469 (556)
T ss_pred CCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 457999999876321 122233344444442211 2356779999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeC-CeEE-EecChHHHHhc
Q 000680 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG-GQIT-QSGNYQELLLA 808 (1354)
Q Consensus 744 Dep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~-G~i~-~~g~~~~l~~~ 808 (1354)
||||++||+.+.+.+.+.+.. . + .|+|+||||++++.. ||+|++|++ |++. ..|+++++.+.
T Consensus 470 DEPt~~LD~~~~~~l~~~l~~-~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 470 DEPTNDLDVETLRALEEALLE-F-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred cCCCCCCCHHHHHHHHHHHHh-C-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999998875543 2 3 499999999999876 899999986 7886 58999988654
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=330.50 Aligned_cols=199 Identities=22% Similarity=0.347 Sum_probs=162.9
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCC-C
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-I 669 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~-~ 669 (1354)
..++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++ +|||++|++. +
T Consensus 321 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 397 (552)
T TIGR03719 321 KVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 397 (552)
T ss_pred eEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCcccc
Confidence 46999999999963 4699999999999999999999999999999999999999999999865 5999999963 4
Q ss_pred -CCCcHHHHHhcCCCC---C--HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEE
Q 000680 670 -QSGSIRDNILYGKPM---D--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1354)
Q Consensus 670 -~~~ti~eni~~g~~~---~--~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illL 743 (1354)
.+.|++||+.++... . +.+.++.++.+++..+. ...+..+|||||||||+||||++.+|+++||
T Consensus 398 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGe~qrv~la~al~~~p~lllL 467 (552)
T TIGR03719 398 DPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD----------QQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467 (552)
T ss_pred CCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 457999999886421 1 22233444444443211 2356778999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeC-CeEE-EecChHHHHh
Q 000680 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG-GQIT-QSGNYQELLL 807 (1354)
Q Consensus 744 Dep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~-G~i~-~~g~~~~l~~ 807 (1354)
||||++||+.+.+.+.+.+... . .|+|+||||++++.. ||+|++|++ |++. ..|+++++.+
T Consensus 468 DEPt~~LD~~~~~~l~~~l~~~--~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 468 DEPTNDLDVETLRALEEALLEF--A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred eCCCCCCCHHHHHHHHHHHHHC--C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999988755432 3 499999999999876 899999987 5876 6788887754
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=332.28 Aligned_cols=195 Identities=19% Similarity=0.356 Sum_probs=158.5
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------e
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------~ 659 (1354)
.++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 588888873 159999999999999999999999999999999999999999999876 3
Q ss_pred EEEEeCCC----CCCCCcHHHHHhcCC----CC--CH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 660 IAYVSQTS----WIQSGSIRDNILYGK----PM--DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 660 i~yv~Q~~----~~~~~ti~eni~~g~----~~--~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
++|+||++ ...+.|+.||+.... .. .. ++.++.++.+++.. .....+..+||||||
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~k 409 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF----------NHAEQAARTLSGGNQ 409 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC----------CCccCccccCCcHHH
Confidence 89999985 334569999986320 11 11 11222333332210 113466789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||++.+|++|||||||++||+.+.+.+.+.+.....+|+|+|+||||++++.. ||++++|++|+++..|+.++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999988766555568999999999999876 89999999999999998876
Q ss_pred HH
Q 000680 805 LL 806 (1354)
Q Consensus 805 l~ 806 (1354)
+.
T Consensus 490 ~~ 491 (510)
T PRK15439 490 IN 491 (510)
T ss_pred CC
Confidence 64
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-31 Score=333.59 Aligned_cols=199 Identities=20% Similarity=0.387 Sum_probs=164.5
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCC--
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-- 667 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~-- 667 (1354)
+..|+++|+++.|+. .++|+|+||+|++|++++|+|||||||||||++|+|+.+|++|+|.+.+ ++||++|++
T Consensus 310 ~~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~ 386 (638)
T PRK10636 310 NPLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLE 386 (638)
T ss_pred CceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchh
Confidence 446999999999963 4699999999999999999999999999999999999999999999864 699999975
Q ss_pred CC-CCCcHHHHHhc-CCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 668 WI-QSGSIRDNILY-GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 668 ~~-~~~ti~eni~~-g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
.+ .+.|+.+++.. .....+++..++++.+++..+. ...+..+|||||||||+||||++++|+++||||
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDK----------VTEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhH----------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 23 34588888742 2122334455566666553221 125667899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE-EecChHHHH
Q 000680 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1354)
||++||+.+.+.+.+.+.. . . .|+|+||||++++.. ||+|++|++|+++ +.|+++++.
T Consensus 457 Pt~~LD~~~~~~l~~~L~~-~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 457 PTNHLDLDMRQALTEALID-F-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCCCCHHHHHHHHHHHHH-c-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999998765543 3 4 499999999999976 8999999999997 789999985
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-31 Score=332.28 Aligned_cols=200 Identities=24% Similarity=0.376 Sum_probs=162.9
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCC--
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-- 667 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~-- 667 (1354)
+..++++|++++|+. .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.. +|||++|++
T Consensus 317 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~ 393 (635)
T PRK11147 317 KIVFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAE 393 (635)
T ss_pred CceEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccc
Confidence 346899999999963 4699999999999999999999999999999999999999999999843 599999985
Q ss_pred CCCCCcHHHHHhcCCC-C--C--HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 000680 668 WIQSGSIRDNILYGKP-M--D--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1354)
Q Consensus 668 ~~~~~ti~eni~~g~~-~--~--~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~ill 742 (1354)
...+.|+.||+.++.. . + ..+..+.++.+++..+. ...+..+||||||||++||||++.+|++||
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGekqRl~la~al~~~p~lLl 463 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKR----------AMTPVKALSGGERNRLLLARLFLKPSNLLI 463 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHH----------HhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3356799999987532 1 1 22333444444443211 225667899999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEe-CCeEE-EecChHHHHh
Q 000680 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE-GGQIT-QSGNYQELLL 807 (1354)
Q Consensus 743 LDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~-~G~i~-~~g~~~~l~~ 807 (1354)
|||||++||+.+.+.+.+.+ ... +.|+|+||||++++.. ||+|++|+ +|++. +.|+|+++++
T Consensus 464 LDEPt~~LD~~~~~~l~~~l-~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 464 LDEPTNDLDVETLELLEELL-DSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred EcCCCCCCCHHHHHHHHHHH-HhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999998876543 332 4599999999999976 89999998 89987 5899999853
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-31 Score=290.72 Aligned_cols=207 Identities=22% Similarity=0.378 Sum_probs=171.4
Q ss_pred CcEEEEeeEEEeCCCC--------CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------
Q 000680 593 RSVKIQEGNFSWDPEL--------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~--------~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------ 658 (1354)
..++.+|+...|+-+. ...+.+++||+.++||.++|||.+|||||||-.+|++++++. |+|.+.|
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 3466777777665331 234789999999999999999999999999999999999886 9999987
Q ss_pred ----------eEEEEeCCCC---CCCCcHHHHHhcCCCC------CH---HHHHHHHHHhccHHHHhcCCCCCcccccCC
Q 000680 659 ----------SIAYVSQTSW---IQSGSIRDNILYGKPM------DK---ARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1354)
Q Consensus 659 ----------~i~yv~Q~~~---~~~~ti~eni~~g~~~------~~---~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~ 716 (1354)
++-.|+|+|. -+.+||.+-|.-|... +. ++..++++..+|+.... .+.
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r----------~RY 423 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR----------NRY 423 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh----------hcC
Confidence 4889999996 3678999988766321 22 34455566667765432 367
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCC
Q 000680 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1354)
Q Consensus 717 g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1354)
+.+.||||||||+||||++-+|++++|||||||||..+..++.+.+.... ..|-+-+++|||+..++. ||+|+||++|
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~G 503 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG 503 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence 78999999999999999999999999999999999999999987665443 347799999999999987 8999999999
Q ss_pred eEEEecChHHHHhcCc
Q 000680 795 QITQSGNYQELLLAGT 810 (1354)
Q Consensus 795 ~i~~~g~~~~l~~~~~ 810 (1354)
+|+|+|+.+++.+++.
T Consensus 504 kiVE~G~~~~if~~P~ 519 (534)
T COG4172 504 KIVEQGPTEAVFANPQ 519 (534)
T ss_pred EEeeeCCHHHHhcCCC
Confidence 9999999999987654
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=330.89 Aligned_cols=198 Identities=25% Similarity=0.406 Sum_probs=163.6
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCCCC
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ 670 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~~~ 670 (1354)
..++++|+++.|+.+ .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ +|||++|++. .
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~-~ 583 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV-D 583 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc-c
Confidence 469999999999632 3589999999999999999999999999999999999999999999876 5999999873 3
Q ss_pred CCcHHHHHhc-----CCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 671 SGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 671 ~~ti~eni~~-----g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
..++.+|... .....+++++++++.+++..+.. ..++.+||||||||++||||++.+|+++||||
T Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~----------~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE 653 (718)
T PLN03073 584 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653 (718)
T ss_pred cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh----------cCCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3455555431 11234566777777777754322 24567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE-EecChHHHH
Q 000680 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1354)
||++||+.+.+.+.+.+.. . + .|+|+||||++++.. ||++++|++|+++ ..|+++++.
T Consensus 654 PT~~LD~~s~~~l~~~L~~-~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 654 PSNHLDLDAVEALIQGLVL-F-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred CCCCCCHHHHHHHHHHHHH-c-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 9999999999988765432 2 3 499999999999986 8999999999998 788888764
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-31 Score=327.50 Aligned_cols=193 Identities=23% Similarity=0.315 Sum_probs=163.3
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCC-CC
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI-QS 671 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~-~~ 671 (1354)
..++++|+++.|+. ..|+++|++|++||+++|+||||||||||+++|+|+++|++|+|.++-+++|+||++.. ++
T Consensus 339 ~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~ 414 (590)
T PRK13409 339 TLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYD 414 (590)
T ss_pred eEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCC
Confidence 45899999999963 24999999999999999999999999999999999999999999987789999999754 57
Q ss_pred CcHHHHHhcCCC-CC-HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 000680 672 GSIRDNILYGKP-MD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1354)
Q Consensus 672 ~ti~eni~~g~~-~~-~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~ 749 (1354)
.|++||+.++.. +. +....++++..++.+..+ ....+|||||||||+||||+.++|++|||||||++
T Consensus 415 ~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-----------~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~ 483 (590)
T PRK13409 415 GTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-----------KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAH 483 (590)
T ss_pred CcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 899999987532 22 234456677777654332 56678999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 750 VDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 750 lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
||+.+...+.+.+..... .|+|+|+||||++++.. ||++++|++ ++...|+
T Consensus 484 LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 484 LDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999998876655444 48899999999999876 899999965 7877776
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=331.57 Aligned_cols=202 Identities=25% Similarity=0.385 Sum_probs=169.5
Q ss_pred cEEEEeeEEEeCCCC-CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
.++++|+++.|+... ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|++.++|
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 488999999996422 24699999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEeCCCCCCC-CcHHHHHhcCCC---CC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 ---SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 ---~i~yv~Q~~~~~~-~ti~eni~~g~~---~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
.++|++|++.+++ .|+.||+.++.. .. +++..+.++.+++.+. +..++.+||||||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~-----------~~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDR-----------VEYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hcCCcccCCHHHHHH
Confidence 3799999998764 699999986421 11 1233444555555433 235667899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeEEEecChHHHH
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
++||||++++|++++|||||++||+.+.+.+.+.+.+...+++|+|++||+++.+..||++++|++|+++++|+.++..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 9999999999999999999999999999998876654444689999999999988889999999999999999988764
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=276.95 Aligned_cols=188 Identities=27% Similarity=0.362 Sum_probs=165.2
Q ss_pred CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCC--CCCCCcHHHHHhc-----C
Q 000680 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS--WIQSGSIRDNILY-----G 681 (1354)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~--~~~~~ti~eni~~-----g 681 (1354)
...+|+||||++.+||.++|+|+|||||||||+.|.|.++|++|+|.++|+|++.-.-. ..++.|.||||.+ |
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 34689999999999999999999999999999999999999999999999999766543 3457799999975 2
Q ss_pred CC--CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHH
Q 000680 682 KP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759 (1354)
Q Consensus 682 ~~--~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~ 759 (1354)
.. ..+++++++++-..|.+.++ .+..+.|-|++.|+++|-|...+|||||+||.++.-|+.-.++-.
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~-----------~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~ 187 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFID-----------QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhh-----------CchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence 22 23567888888888877665 567899999999999999999999999999999999999888876
Q ss_pred HHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHh
Q 000680 760 NECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 760 ~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 807 (1354)
+.+.....+++|+|+||||++.+++ ||++++|++|+|...|++++..+
T Consensus 188 ~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 188 ERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 6665555788999999999999987 99999999999999999999874
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-31 Score=277.80 Aligned_cols=154 Identities=25% Similarity=0.291 Sum_probs=133.5
Q ss_pred EeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-eEEEEeCCCCCCCCcHHH
Q 000680 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQSGSIRD 676 (1354)
Q Consensus 598 ~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-~i~yv~Q~~~~~~~ti~e 676 (1354)
.|+++.|+. .++++| ++++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-------- 71 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-------- 71 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC--------
Confidence 467888863 457888 499999999999999999999999999999999999999998 5899998652
Q ss_pred HHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHH
Q 000680 677 NILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA 756 (1354)
Q Consensus 677 ni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~ 756 (1354)
||||||||++||||++.+|++++|||||++||+++.+
T Consensus 72 -------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 72 -------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-cEEEEEcCCcchhhh-cCEEEEEeCCeEEEe--cChHHHH
Q 000680 757 TLFNECVMAALEK-KTVILVTHQVEFLSE-VDRILVLEGGQITQS--GNYQELL 806 (1354)
Q Consensus 757 ~i~~~~~~~~~~~-~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~--g~~~~l~ 806 (1354)
.+.+.+.....++ +|+|++||+++++.. ||++++|+++-.+.+ |.+...+
T Consensus 109 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 109 NAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 9887665544454 899999999999885 899999998866543 5544433
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-31 Score=324.54 Aligned_cols=194 Identities=24% Similarity=0.371 Sum_probs=156.7
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC-CCcEEEEcC-------------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-ISGTVNLYG------------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~-~~G~i~~~g------------- 658 (1354)
..++++|+++.|+. ..+|+|+||++++||+++|+||||||||||+++|+|+.++ ++|+|.++|
T Consensus 259 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 259 PRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred ceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 46999999999963 3589999999999999999999999999999999998876 699998865
Q ss_pred -eEEEEeCCCCC-C--CCcHHHHHhcCCC--------CC---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChH
Q 000680 659 -SIAYVSQTSWI-Q--SGSIRDNILYGKP--------MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1354)
Q Consensus 659 -~i~yv~Q~~~~-~--~~ti~eni~~g~~--------~~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgG 723 (1354)
+++|++|++.+ + ..++++++.++.. .. +++.++.++.+++..+. ...++.+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG 405 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRT----------ADAPFHSLSWG 405 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhh----------ccCchhhCCHH
Confidence 28999999754 2 2477777754310 11 12345555555554311 12566789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCc-EEEEEcCCcchhhh--cCEEEEEeCCeEEEe
Q 000680 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSE--VDRILVLEGGQITQS 799 (1354)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~-tvilvtH~~~~l~~--~d~i~~l~~G~i~~~ 799 (1354)
||||++||||++.+|+++||||||++||+++.+.+.+.+.....+++ |+|+||||++++.. +|++++|++|+|++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999999999999999999999999999999876665544554 69999999999874 699999999998764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=323.05 Aligned_cols=201 Identities=21% Similarity=0.334 Sum_probs=157.8
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~------------- 659 (1354)
..|+++|+++.+ +++|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|.
T Consensus 249 ~~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 249 VILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred cEEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 368999999873 24899999999999999999999999999999999999999999999861
Q ss_pred -EEEEeCCCC----CCCCcHHHHHhcC-----CC----CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 660 -IAYVSQTSW----IQSGSIRDNILYG-----KP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 660 -i~yv~Q~~~----~~~~ti~eni~~g-----~~----~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
++|++|++- +.+.|+.+|+.+. .. .+....++ ...+.++.+..++. ....+..+||||||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~-~~~~~~~~LSgGq~ 397 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSMRVKTP-GHRTQIGSLSGGNQ 397 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhcCccCC-CcccccccCCcHHH
Confidence 899999852 3456777774322 11 11111111 11222333322211 13567889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 804 (1354)
||++||||+..+|+++||||||++||+.+.+.+++.+.....+|+|+|++|||++++.. ||++++|++|+++..++.++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999987665555568999999999999876 89999999999998776543
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=292.85 Aligned_cols=186 Identities=23% Similarity=0.290 Sum_probs=148.6
Q ss_pred eeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEE-----------EcC---------
Q 000680 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN-----------LYG--------- 658 (1354)
Q Consensus 599 ~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~-----------~~g--------- 658 (1354)
|++++|+.. .++|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|
T Consensus 5 ~~~~~y~~~--~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 5 EPVHRYGPN--SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred CcceeecCc--chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 678888632 35899999 4999999999999999999999999999999999995 434
Q ss_pred ------eEEEEeCCCCCCCCcHHHHHhcCCC--CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 ------SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ------~i~yv~Q~~~~~~~ti~eni~~g~~--~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.++|++|++..++.++.+|+.+... ..+++..++++.+++.+. ...++.+||||||||++|
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHV-----------LDRNIDQLSGGELQRVAI 150 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHH
Confidence 2688899876665667777665321 123445566666655432 235677999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEe
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1354)
|||++.+|++++|||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||+|++|+ |++.+.
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence 999999999999999999999999998877665544458999999999999886 89999995 556543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=349.25 Aligned_cols=204 Identities=22% Similarity=0.332 Sum_probs=170.7
Q ss_pred cEEEEeeEEEeCCC-CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEEcC---------eE
Q 000680 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG---------SI 660 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~---~~~G~i~~~g---------~i 660 (1354)
.++++|++++++.+ ..+++|+|+|+++++||+++|+|||||||||||++|+|..+ +++|+|.++| .+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 47899999998632 23579999999999999999999999999999999999987 6889999988 38
Q ss_pred EEEeCCCC-CCCCcHHHHHhcCC------CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHH
Q 000680 661 AYVSQTSW-IQSGSIRDNILYGK------PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 661 ~yv~Q~~~-~~~~ti~eni~~g~------~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~ 729 (1354)
|||+|++. +++.||+||+.|+. ..++ ++.+++++..+|.+. .++.+|+.+.+||||||||++
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~d~~v~~~~~~LSgGqrqRl~ 911 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY-------ADAVVGVPGEGLNVEQRKRLT 911 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh-------CCCeeCCCCCCCCHHHhhHHH
Confidence 99999865 56789999999752 1222 233455555555432 356788888899999999999
Q ss_pred HHHHHhcCCC-EEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchh--hhcCEEEEEeCC-eEEEecChHH
Q 000680 730 LARAVYNDAD-IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL--SEVDRILVLEGG-QITQSGNYQE 804 (1354)
Q Consensus 730 lARal~~~~~-illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l--~~~d~i~~l~~G-~i~~~g~~~~ 804 (1354)
||||++.+|+ +++||||||+||+.++..+.+.+.+...+|+|+|++|||++.. ..+|++++|++| ++++.|+.++
T Consensus 912 Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 9999999997 9999999999999999999887766656789999999999863 568999999987 9999998754
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=272.10 Aligned_cols=150 Identities=27% Similarity=0.434 Sum_probs=123.0
Q ss_pred CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------EEEEeCCCCCCCCcHHHHHhc
Q 000680 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQTSWIQSGSIRDNILY 680 (1354)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~--------i~yv~Q~~~~~~~ti~eni~~ 680 (1354)
.+++|+|+||++++|++++|+|||||||||||+++++ ++|++.+.|. ++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q--------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQ--------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhH---------------
Confidence 4578999999999999999999999999999999974 6899887764 334333
Q ss_pred CCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcC--CCEEEEeCCCCCcCHHHHHHH
Q 000680 681 GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND--ADIYLFDDPFSAVDAHTAATL 758 (1354)
Q Consensus 681 g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~--~~illLDep~s~lD~~~~~~i 758 (1354)
.++++..++ ++. ..++++.+||||||||++||||++++ |+++||||||++||++..+.+
T Consensus 68 ---------~~~l~~~~L---------~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l 128 (176)
T cd03238 68 ---------LQFLIDVGL---------GYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQL 128 (176)
T ss_pred ---------HHHHHHcCC---------Ccc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHH
Confidence 223333333 221 13567889999999999999999999 999999999999999999998
Q ss_pred HHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeCCeE
Q 000680 759 FNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1354)
Q Consensus 759 ~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1354)
.+.+.....+|+|+|++||+++++..+|++++|++|+.
T Consensus 129 ~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 129 LEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 87665544468999999999999888999999977554
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=274.45 Aligned_cols=197 Identities=23% Similarity=0.382 Sum_probs=161.2
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC------------
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------ 658 (1354)
.+.-|+++|++..|.. +++|+|||++|++||..+|+|||||||||||+.+.|+.+|++|.+.+.|
T Consensus 28 ~~~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~el 104 (257)
T COG1119 28 NEPLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104 (257)
T ss_pred CcceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHH
Confidence 3456999999999974 5799999999999999999999999999999999999999999998765
Q ss_pred --eEEEEeCC---CCCCCCcHHHHHhcCC---------CCCHHHHHH---HHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 659 --SIAYVSQT---SWIQSGSIRDNILYGK---------PMDKARYDK---AIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 659 --~i~yv~Q~---~~~~~~ti~eni~~g~---------~~~~~~~~~---~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
+||||+-+ -...+.+++|-|+-|. +++++.+++ .++.+++.. ..++.-.+||
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-----------la~r~~~~LS 173 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-----------LADRPFGSLS 173 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-----------hccCchhhcC
Confidence 48999854 2334668888887442 344444433 333344332 2235668899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC--CcEEEEEcCCcchhhhc-CEEEEEeCCeEEE
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSEV-DRILVLEGGQITQ 798 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~~-d~i~~l~~G~i~~ 798 (1354)
-||||||-||||++.+|.++|||||+++||....+.+.+.+...... +.|+|+|||+.+.++.| ++++.+++|+++.
T Consensus 174 ~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 174 QGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 99999999999999999999999999999999998888776655443 78999999999999875 9999999999998
Q ss_pred ecC
Q 000680 799 SGN 801 (1354)
Q Consensus 799 ~g~ 801 (1354)
+|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 874
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-30 Score=263.91 Aligned_cols=189 Identities=28% Similarity=0.391 Sum_probs=154.8
Q ss_pred CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCCC---CCCC
Q 000680 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSW---IQSG 672 (1354)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~yv~Q~~~---~~~~ 672 (1354)
++++|+++|++|++|+++.|+|.||||||||+++|.|.+.|++|+|.++| .++-|+|+|- ..+.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 46799999999999999999999999999999999999999999999988 2788999995 3678
Q ss_pred cHHHHHhcCC----C--CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000680 673 SIRDNILYGK----P--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1354)
Q Consensus 673 ti~eni~~g~----~--~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep 746 (1354)
||.||+.... . +....-.+ ....-.+-+..++.|-+..++.+..-|||||||-++|+.|..+.|+|++|||=
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~--~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNER--RRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHH--HHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 9999998631 1 11100000 01122344666777777777788889999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchh-hhcCEEEEEeCCeEEEe
Q 000680 747 FSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQS 799 (1354)
Q Consensus 747 ~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~ 799 (1354)
|+||||+++..+++.--+... .+-|.++|||+++.. ..-+|.++|++|+|+.+
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 999999999998876554443 356999999999874 55799999999999964
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-26 Score=253.08 Aligned_cols=376 Identities=19% Similarity=0.220 Sum_probs=261.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHH
Q 000680 940 VYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAAS 1019 (1354)
Q Consensus 940 iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~ 1019 (1354)
-++++..+..+...+........|.+...+++.++.++++.+|+.-+++-..||++.++++|+.+|... -..+..+.++
T Consensus 53 ~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~-~s~lp~~~qa 131 (546)
T COG4615 53 EFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFA-FSRLPELVQA 131 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeeh-HhhhHHHHHH
Confidence 334444444445556667778889999999999999999999999999999999999999999999832 3344557777
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHH
Q 000680 1020 GTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN 1099 (1354)
Q Consensus 1020 ~~~~i~~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~ 1099 (1354)
.+..+++++.+++.+|++.++.+..+++..+.+...++..-+-.+...++...+.++++-.++|.+..+......+....
T Consensus 132 ~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~ 211 (546)
T COG4615 132 IILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHN 211 (546)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHh
Confidence 88888999999999999888777666665555444433333333444455667899999999999998876644333222
Q ss_pred HHH------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccChhHHHHHHHHHHHHHHHHHHHHH
Q 000680 1100 YLK------LVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLI-PRGYVAPGLVGLSLSYAFTLTGTQVFLSR 1172 (1354)
Q Consensus 1100 ~~~------~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~~vl~-~~g~ls~g~~gl~l~ya~~l~~~l~~l~~ 1172 (1354)
..- .-++..+..........|-.+.+-.+.. +..++. ..+--+...+.......+.+-+|+..++.
T Consensus 212 ~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIG-------lvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vg 284 (546)
T COG4615 212 NLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIG-------LVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVG 284 (546)
T ss_pred hhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHh
Confidence 111 1111111111222334454433211111 111111 11111111111222233445689999999
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCC
Q 000680 1173 WYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRT 1252 (1354)
Q Consensus 1173 ~~~~le~~~~sveRI~e~~~~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrT 1252 (1354)
....+-++.++.+||.++..-|+.+. -....+-++| ..||++||.|+|.++. --+.-||++|+.||.|=|+|.+
T Consensus 285 ilP~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~N 358 (546)
T COG4615 285 ILPTLLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGN 358 (546)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCcccc--CCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCC
Confidence 99999999999999998765322111 1111222234 4699999999997654 3578899999999999999999
Q ss_pred CccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCc
Q 000680 1253 GSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLK 1332 (1354)
Q Consensus 1253 GSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~ 1332 (1354)
||||||++++|.|+|.|++|+|+.||.+++.=++++.|+-++-|.-|-+||+.++ .|.+..+.+-|.+-|++-.+.
T Consensus 359 GsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~LqrLel~ 434 (546)
T COG4615 359 GSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQRLELA 434 (546)
T ss_pred CCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998765 344446777776666655554
Q ss_pred h
Q 000680 1333 T 1333 (1354)
Q Consensus 1333 ~ 1333 (1354)
.
T Consensus 435 ~ 435 (546)
T COG4615 435 H 435 (546)
T ss_pred h
Confidence 3
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-29 Score=241.53 Aligned_cols=183 Identities=23% Similarity=0.356 Sum_probs=149.4
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEEcC-----------eE
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG-----------SI 660 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~---~G~i~~~g-----------~i 660 (1354)
..++|++..-+ ..-.|.|+|++|.+||++-+.||+|||||||+.-+.|.+.+. +|++.+++ ++
T Consensus 3 l~l~nvsl~l~---g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~ 79 (213)
T COG4136 3 LCLKNVSLRLP---GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQI 79 (213)
T ss_pred eeeeeeeecCC---CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhe
Confidence 45678886654 345899999999999999999999999999999999998874 78998876 59
Q ss_pred EEEeCCCCCCC-CcHHHHHhcCCCCC------HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 000680 661 AYVSQTSWIQS-GSIRDNILYGKPMD------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 661 ~yv~Q~~~~~~-~ti~eni~~g~~~~------~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARa 733 (1354)
|..+|++|+|+ .+|-+|++|..+-+ +...+.+++..+|.....+. +.+||||||.||+|-|+
T Consensus 80 GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----------P~tlSGGQrARvaL~R~ 148 (213)
T COG4136 80 GILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQD-----------PATLSGGQRARVALLRA 148 (213)
T ss_pred eeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcC-----------hhhcCcchHHHHHHHHH
Confidence 99999999875 59999999986632 22344566677776666543 45899999999999999
Q ss_pred HhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhhcCEEEEE
Q 000680 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVL 791 (1354)
Q Consensus 734 l~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l 791 (1354)
+.+.|+.++||||||.||..-+.+..+-++... ..|-.+|+||||.+..+.-.||+-|
T Consensus 149 Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 149 LLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 999999999999999999988877666666543 3578899999999988854565544
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=250.30 Aligned_cols=188 Identities=23% Similarity=0.360 Sum_probs=155.1
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCCCC-CCCcHH
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWI-QSGSIR 675 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~yv~Q~~~~-~~~ti~ 675 (1354)
..+.+.+||++++|+..+|+|.||||||||.+.|.|..+|++|+|.++| .|-.++|+|.- +|- |
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NP--R 103 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP--R 103 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccCh--h
Confidence 3578999999999999999999999999999999999999999999987 48999999852 332 2
Q ss_pred HHH----hcC----CCCC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEE
Q 000680 676 DNI----LYG----KPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1354)
Q Consensus 676 eni----~~g----~~~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illL 743 (1354)
-|| -+. ..++ .++..+.++..+|-+|-.. -++..||-||||||||||||.-+|+|++.
T Consensus 104 l~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan----------~~~~~la~~QKQRVaLARALIL~P~iIIa 173 (267)
T COG4167 104 LRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHAN----------YYPHMLAPGQKQRVALARALILRPKIIIA 173 (267)
T ss_pred hhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccc----------cchhhcCchhHHHHHHHHHHhcCCcEEEe
Confidence 222 111 1222 2345556666677655432 35678999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhcC
Q 000680 744 DDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 744 Dep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 809 (1354)
||.+.+||...+.++.+..+... ..|-+-|.|+.++..+++ +|+|+||++|+++|.|++.+++..+
T Consensus 174 DeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P 241 (267)
T COG4167 174 DEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP 241 (267)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCC
Confidence 99999999999999987655543 348899999999999998 7999999999999999999998764
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=258.62 Aligned_cols=142 Identities=39% Similarity=0.599 Sum_probs=126.8
Q ss_pred EEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------EEEE
Q 000680 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------IAYV 663 (1354)
Q Consensus 597 ~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~-------------i~yv 663 (1354)
++|++|.|+. .++++++|+++++|++++|+|+||||||||+++|.|+++|.+|+|.++|. ++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6789999964 36999999999999999999999999999999999999999999999873 3444
Q ss_pred eCCCCCCCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEE
Q 000680 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743 (1354)
Q Consensus 664 ~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illL 743 (1354)
+| ||||||||++||||++.+|++++|
T Consensus 79 ~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 79 PQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred ee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44 999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCe
Q 000680 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1354)
Q Consensus 744 Dep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1354)
||||++||+.+...+.+.+.....+++|+|++||+++++.. +|++++|++|+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999998877665444446899999999999988 59999999985
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=331.41 Aligned_cols=204 Identities=24% Similarity=0.372 Sum_probs=167.1
Q ss_pred cEEEEeeEEEeCCC----------CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEEcC---
Q 000680 594 SVKIQEGNFSWDPE----------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG--- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~----------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~--~~G~i~~~g--- 658 (1354)
.+.++|+++..+.. ....+|+|+|+++++|++++|+|||||||||||++|+|..++ .+|+|.++|
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 58899999887532 124699999999999999999999999999999999998763 789999987
Q ss_pred -------eEEEEeCCCCC-CCCcHHHHHhcCC------CCCH----HHHHHHHHHhccHHHHhcCCCCCcccccCCC-CC
Q 000680 659 -------SIAYVSQTSWI-QSGSIRDNILYGK------PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRG-LN 719 (1354)
Q Consensus 659 -------~i~yv~Q~~~~-~~~ti~eni~~g~------~~~~----~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g-~~ 719 (1354)
.+|||+|++.+ ++.||+||+.|+. ..+. ++.+++++..+|.+.. ++.+|..+ ..
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~-------~~~vg~~~~~~ 1019 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLK-------DAIVGLPGVTG 1019 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHh-------CCccCCCCCCC
Confidence 27999999755 5679999998742 1222 2345666666665432 34555443 68
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcch-h-hhcCEEEEEeC-CeE
Q 000680 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-L-SEVDRILVLEG-GQI 796 (1354)
Q Consensus 720 LSgGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l-~~~d~i~~l~~-G~i 796 (1354)
||||||||++|||||+.+|++++||||||+||++++..+.+.+.+...+|+|+|++|||++. + ..+|++++|++ |++
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 99999999999999999999999999999999999999988776666678999999999984 3 56899999986 899
Q ss_pred EEecChHH
Q 000680 797 TQSGNYQE 804 (1354)
Q Consensus 797 ~~~g~~~~ 804 (1354)
++.|+..+
T Consensus 1100 v~~G~~~~ 1107 (1470)
T PLN03140 1100 IYSGPLGR 1107 (1470)
T ss_pred EEECCccc
Confidence 99998754
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=290.30 Aligned_cols=202 Identities=26% Similarity=0.418 Sum_probs=171.0
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCC-
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS- 667 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~- 667 (1354)
....++++|++++|+.+ +++++++||.|.+|+.++|+||||+||||||+.|+|...|.+|+|.+.. ++||.+|+.
T Consensus 318 g~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~ 395 (530)
T COG0488 318 GKLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD 395 (530)
T ss_pred CCeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhh
Confidence 45679999999999754 5799999999999999999999999999999999999999999999865 599999985
Q ss_pred -CCCCCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 668 -WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 668 -~~~~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
+..+.|+.|++.-..+ ..+...+..+..+.+..+-. ..+...||||||.|+.||+.+.++|.+|||||
T Consensus 396 ~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE 465 (530)
T COG0488 396 ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDE 465 (530)
T ss_pred hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhccCCCEEEEcC
Confidence 3456699999987654 33677777888777765543 26678899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEE-ecChHHHHhc
Q 000680 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ-SGNYQELLLA 808 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~-~g~~~~l~~~ 808 (1354)
||++||..+...+-+.+ .. -+ -|+|+||||.+|+.. |++++.+++ ++.. .|+|+++.+.
T Consensus 466 PTNhLDi~s~~aLe~aL-~~-f~-Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 466 PTNHLDIESLEALEEAL-LD-FE-GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CCccCCHHHHHHHHHHH-Hh-CC-CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 99999999998875433 22 23 499999999999998 799999999 6665 4999998754
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-28 Score=247.66 Aligned_cols=200 Identities=23% Similarity=0.358 Sum_probs=165.9
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
..++++|++.+++. -.+|+|+||++.+||+-+|+||||+||||++..|.|-.+|+.|+|.++|
T Consensus 4 ~iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr 80 (249)
T COG4674 4 IILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80 (249)
T ss_pred ceEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHH
Confidence 35678899988874 4689999999999999999999999999999999999999999999988
Q ss_pred -eEEEEeCCCCCC-CCcHHHHHhcCCC---------------CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP---------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 659 -~i~yv~Q~~~~~-~~ti~eni~~g~~---------------~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
.||-=+|.|-+| +.||+||+..... ..+++.++++...+|.+.- ......||
T Consensus 81 ~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~-----------~~~A~~LS 149 (249)
T COG4674 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDER-----------DRLAALLS 149 (249)
T ss_pred hccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhh-----------hhhhhhhc
Confidence 278889999876 6699999965321 1233566666655554322 24457899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCc-CHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEe
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAV-DAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~l-D~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1354)
-||||++.|+.-+.++|++++||||.+++ |.++.+ .- ++++...+++++++|.||++|++. ||+|-||+.|.+..+
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~-ta-eLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~E 227 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEK-TA-ELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAE 227 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHH-HH-HHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeec
Confidence 99999999999999999999999999999 555444 33 455666678899999999999987 899999999999999
Q ss_pred cChHHHHhc
Q 000680 800 GNYQELLLA 808 (1354)
Q Consensus 800 g~~~~l~~~ 808 (1354)
|+.+++.++
T Consensus 228 Gsld~v~~d 236 (249)
T COG4674 228 GSLDEVQND 236 (249)
T ss_pred ccHHHhhcC
Confidence 999998654
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=272.85 Aligned_cols=193 Identities=27% Similarity=0.413 Sum_probs=138.6
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc-------CeEEEEe
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-------GSIAYVS 664 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~-------g~i~yv~ 664 (1354)
..+|.+.|.+.+|.. +..|++-++++..|-..++||+||+||||||++|.. |.|..- |.--+.-
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~ 148 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEAL 148 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHH
Confidence 356888888888873 568999999999999999999999999999999986 333221 1101111
Q ss_pred CCCCCCCCcHHHHHhcCC-CC----C-HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000680 665 QTSWIQSGSIRDNILYGK-PM----D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 665 Q~~~~~~~ti~eni~~g~-~~----~-~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1354)
|+ .+...+-+.-.+.-. .. . ++-|.++++-.+..+++...| ..+||||-|-|++||||+..+|
T Consensus 149 ~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLARAlf~~p 217 (582)
T KOG0062|consen 149 QS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALARALFAKP 217 (582)
T ss_pred hh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHHHHhcCC
Confidence 11 112223333222211 11 1 233445666666667666543 4679999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE-EecChHHHHh
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELLL 807 (1354)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~~ 807 (1354)
|+|||||||+.||.....++-+.+.. .+.|+|+|+||..||.. |..|+.+++-|+- +.|+++++.+
T Consensus 218 DlLLLDEPTNhLDv~av~WLe~yL~t---~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 218 DLLLLDEPTNHLDVVAVAWLENYLQT---WKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred CEEeecCCcccchhHHHHHHHHHHhh---CCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 99999999999999999998654422 23799999999999998 7888888887664 5677766543
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-28 Score=273.97 Aligned_cols=138 Identities=43% Similarity=0.760 Sum_probs=130.6
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccC
Q 000680 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1354)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1354)
|+|+|+|++++|+++.+++|+||||+|++||++|||||||||||||+++|+|+++ .+|+|+|||+|+.+++++++|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 6799999999997655679999999999999999999999999999999999998 799999999999999999999999
Q ss_pred ceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1294 SIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1294 siVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
++|||+|.+|++|+++|++|++.++++++|++++.+++.+++..+|+++|+ +|.++|.|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G 142 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHG 142 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHH
Confidence 999999999999999999998878999999999999999999999999988 57888865
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-28 Score=257.29 Aligned_cols=187 Identities=23% Similarity=0.329 Sum_probs=146.3
Q ss_pred CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe------------EEEEeC---CC-CCCCC
Q 000680 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAYVSQ---TS-WIQSG 672 (1354)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~------------i~yv~Q---~~-~~~~~ 672 (1354)
..++.+||||+|++|++++.+|+||+||||+||.|.|.+.|++|.|.+.|. ++||.- +- |-.+
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp- 114 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP- 114 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech-
Confidence 346899999999999999999999999999999999999999999999983 455432 22 3221
Q ss_pred cHHHHHhcC---CCCCHHHHH----HHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 673 SIRDNILYG---KPMDKARYD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 673 ti~eni~~g---~~~~~~~~~----~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
+.|-+.-- .+...++|. ...+..+++..+ ..+...||-|||.|+.||.||.++|+|++|||
T Consensus 115 -~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~l-----------k~~vr~LSlGqRmraeLaaaLLh~p~VLfLDE 182 (325)
T COG4586 115 -ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFL-----------KWPVRKLSLGQRMRAELAAALLHPPKVLFLDE 182 (325)
T ss_pred -hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhh-----------hhhhhhccchHHHHHHHHHHhcCCCcEEEecC
Confidence 22222110 122333333 333333443333 35678999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 746 PFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
||-+||..+...|.+.+.... .++.||+++||+++-+.. ||||+.|+.|++++.|+.+++.++
T Consensus 183 pTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 183 PTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred CccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 999999999999877655433 468899999999998876 999999999999999999998764
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-27 Score=260.55 Aligned_cols=180 Identities=23% Similarity=0.325 Sum_probs=123.1
Q ss_pred CCCcceeeeEEeeCCeEEEEECCCCCCHHHHH-HHHhC--------------------CccCCCcEEEEcC-eEEEEeCC
Q 000680 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL-YAILG--------------------EIPKISGTVNLYG-SIAYVSQT 666 (1354)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl-~~i~g--------------------~~~~~~G~i~~~g-~i~yv~Q~ 666 (1354)
+.++|+|+||+|++||+++|+|+||||||||+ ..+.+ ...|..++ +.| ..++..|+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 84 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDS--IEGLSPAIAIDQ 84 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccc--ccCCCceEEecC
Confidence 45799999999999999999999999999996 33221 11111111 112 23344444
Q ss_pred CCC-C--CCcHH---HHHhc-CCCCCH---HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhc
Q 000680 667 SWI-Q--SGSIR---DNILY-GKPMDK---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736 (1354)
Q Consensus 667 ~~~-~--~~ti~---eni~~-g~~~~~---~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~ 736 (1354)
+.. . ..++. +...+ ...+.. ....+.++.+++ .+. ....++.+||||||||++||||++.
T Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l---------~~~-~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 85 KTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGL---------GYL-TLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCC---------Ccc-cccCccCcCCHHHHHHHHHHHHHHh
Confidence 321 1 12322 21111 100111 111122222222 211 1346788999999999999999999
Q ss_pred CC--CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEE------eCCeEEEec
Q 000680 737 DA--DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL------EGGQITQSG 800 (1354)
Q Consensus 737 ~~--~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l------~~G~i~~~g 800 (1354)
+| +++||||||++||+.+.+.+.+.+.....+|.|+|++||+++.+..||++++| ++|+|+++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 59999999999999999999887665555689999999999998889999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-27 Score=292.14 Aligned_cols=207 Identities=27% Similarity=0.427 Sum_probs=173.9
Q ss_pred CcEEEEeeEEEeCCC--CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC---CCcEEEEcC---------
Q 000680 593 RSVKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG--------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~--~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~---~~G~i~~~g--------- 658 (1354)
..+.++|.+..-+.. ..+.+|+|||.++++||+.||.||+||||||||++|+|-.+. .+|+|.++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 457778887776544 246799999999999999999999999999999999999874 799999999
Q ss_pred -eEEEEeCCCC-CCCCcHHHHHhcCC------CCC----HHHHHHHHHHhccHHHHhcCCCCCcccccCC-CCCCChHHH
Q 000680 659 -SIAYVSQTSW-IQSGSIRDNILYGK------PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQR-GLNLSGGQK 725 (1354)
Q Consensus 659 -~i~yv~Q~~~-~~~~ti~eni~~g~------~~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~-g~~LSgGQk 725 (1354)
..|||.|+.. +.+.||+|++.|.. ..+ +++++++++.-+|+ +. .+|.||.. ...+|||||
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~------~~t~ig~~~~rgiSGGEr 176 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KC------ADTLIGNPGIRGLSGGER 176 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hh------ccceecCCCCCccccchh
Confidence 3899999876 56789999998742 122 34666666666665 22 35666532 368999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcch--hhhcCEEEEEeCCeEEEecChH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF--LSEVDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~--l~~~d~i~~l~~G~i~~~g~~~ 803 (1354)
+||++|.-+..||.|++|||||||||..++.++.+.+.+...+|||||++-|+++. ....|++++|.+|++++.|+.+
T Consensus 177 kRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~ 256 (613)
T KOG0061|consen 177 KRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPR 256 (613)
T ss_pred hHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHH
Confidence 99999999999999999999999999999999998877777789999999999964 4668999999999999999998
Q ss_pred HHH
Q 000680 804 ELL 806 (1354)
Q Consensus 804 ~l~ 806 (1354)
++.
T Consensus 257 ~~~ 259 (613)
T KOG0061|consen 257 ELL 259 (613)
T ss_pred HHH
Confidence 765
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=282.54 Aligned_cols=190 Identities=24% Similarity=0.356 Sum_probs=152.5
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccC---CCcEEEEcC----------eEEEEeCCCC-CCCCcHH
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG----------SIAYVSQTSW-IQSGSIR 675 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~---~~G~i~~~g----------~i~yv~Q~~~-~~~~ti~ 675 (1354)
..+|+|++.-+++|+.+.+.||.||||||||+++.|..+. ..|+|..+| .++|++|+-+ +...|||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4689999999999999999999999999999999998764 356888877 4899999865 5678999
Q ss_pred HHHhcCC-------CCC---HHHHH-----HHHHHhccHHHHhcCCCCCcccccCCC-CCCChHHHHHHHHHHHHhcCCC
Q 000680 676 DNILYGK-------PMD---KARYD-----KAIKACALDKDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 676 eni~~g~-------~~~---~~~~~-----~~~~~~~l~~~l~~l~~gd~t~ig~~g-~~LSgGQkqRv~lARal~~~~~ 739 (1354)
|-+.|.. .+| ++.|. .+++..+ +...-+|.+|... ...|||||.||++|-+++.++.
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilG-------L~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~ 280 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILG-------LDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPAS 280 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhC-------chhhccceecccccccccCcccceeeeeeeeecCcc
Confidence 9998842 122 22222 2222223 3344567777554 6799999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcch--hhhcCEEEEEeCCeEEEecChHHHH
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEF--LSEVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 740 illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~--l~~~d~i~~l~~G~i~~~g~~~~l~ 806 (1354)
++++||++.|||..+.-++.+.+.... .-+.|.++.-|+... ....|+|++|.+|++++.|+.++.+
T Consensus 281 ~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 281 ILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred eeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 999999999999999988776554432 346788888888754 5668999999999999999999886
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=229.05 Aligned_cols=217 Identities=24% Similarity=0.326 Sum_probs=164.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC---------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------- 658 (1354)
-+++++.+..|.+. .-.+|+||++.|||..+|||.+||||||||++|.|-+.|+.|+|.+..
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 56788899999864 357999999999999999999999999999999999999999998752
Q ss_pred -------eEEEEeCCCCC---CCCcHHHHHhcCC-CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 -------SIAYVSQTSWI---QSGSIRDNILYGK-PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 -------~i~yv~Q~~~~---~~~ti~eni~~g~-~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
..|+|-|+|-- ..-|.-.||---. ......|-+.-. . ..+.++... =|.+.|++.+.+.|||++||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~-~-a~~WL~~VE-I~~~RiDD~PrtFSGGMqQR 159 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRA-E-AQDWLEEVE-IDLDRIDDLPRTFSGGMQQR 159 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHH-H-HHHHHHhcc-cCcccccCcccccchHHHHH
Confidence 27999999842 1112233331100 011122222211 1 112233221 24567788899999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhc-CCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHH
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 805 (1354)
+.|||-+...|.++++||||.+||..+...+.+.+..... -+-.+|+||||+..... +||..||++|+++|+|-.+.+
T Consensus 160 LQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrv 239 (258)
T COG4107 160 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRV 239 (258)
T ss_pred HHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccccc
Confidence 9999999999999999999999999999998875443322 36799999999999886 899999999999999999888
Q ss_pred HhcCc-hHHHHH
Q 000680 806 LLAGT-AFEQLV 816 (1354)
Q Consensus 806 ~~~~~-~~~~~~ 816 (1354)
++++. .|.+++
T Consensus 240 LDDP~hPYTQLL 251 (258)
T COG4107 240 LDDPHHPYTQLL 251 (258)
T ss_pred ccCCCCchHHHH
Confidence 86643 355543
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-26 Score=237.47 Aligned_cols=200 Identities=24% Similarity=0.337 Sum_probs=161.4
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCC--ccCCCcEEEEcC--------------
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYG-------------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~--~~~~~G~i~~~g-------------- 658 (1354)
++++|...+-..+ +.+|+++||+|++||+.+|.||||||||||.++|+|. +++++|+|.++|
T Consensus 4 L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 4 LEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 5778888776532 4799999999999999999999999999999999996 478999999998
Q ss_pred eEEEEeCCCCC-CCCcHHHHHhcCCC----C---C---HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH
Q 000680 659 SIAYVSQTSWI-QSGSIRDNILYGKP----M---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1354)
Q Consensus 659 ~i~yv~Q~~~~-~~~ti~eni~~g~~----~---~---~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR 727 (1354)
.+...+|.|.- +.-|+.+.+.-+.. . . .++.++.++..++++++.. ..+ ...+|||+|.|
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~------R~v---N~GFSGGEkKR 152 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE------RYV---NEGFSGGEKKR 152 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhh------ccc---CCCcCcchHHH
Confidence 38899999974 44588887764211 1 1 2344445555556553321 112 23699999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhc--CEEEEEeCCeEEEecChHHH
Q 000680 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV--DRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 728 v~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~--d~i~~l~~G~i~~~g~~~~l 805 (1354)
..|+.++..+|++.+||||-||||...-+.+.+-+-....+|.+++++||.-..+... |++.+|-+|+|+.+|.+ |+
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HH
Confidence 9999999999999999999999999999987765555566799999999999999875 99999999999999998 65
Q ss_pred H
Q 000680 806 L 806 (1354)
Q Consensus 806 ~ 806 (1354)
.
T Consensus 232 ~ 232 (251)
T COG0396 232 A 232 (251)
T ss_pred H
Confidence 4
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-26 Score=253.70 Aligned_cols=182 Identities=24% Similarity=0.381 Sum_probs=129.8
Q ss_pred CcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHh--------CCc--cCCCcEEEE----cCeEEEEeCCCC--------
Q 000680 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL--------GEI--PKISGTVNL----YGSIAYVSQTSW-------- 668 (1354)
Q Consensus 611 ~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~--------g~~--~~~~G~i~~----~g~i~yv~Q~~~-------- 668 (1354)
..|+|+|++||.|.+++|+|++|||||||++.++ +.. .|..++... -..+-+|.|.|.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999999663 111 122221111 012444444432
Q ss_pred ---------------------------------------CCCCcHHHHHhcCCCCC-HHHHHHHHHHhccHHHHhcCCCC
Q 000680 669 ---------------------------------------IQSGSIRDNILYGKPMD-KARYDKAIKACALDKDINNFDHG 708 (1354)
Q Consensus 669 ---------------------------------------~~~~ti~eni~~g~~~~-~~~~~~~~~~~~l~~~l~~l~~g 708 (1354)
+.+.|+.||+.|...+. .++..+. ++.+..+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~---------L~~vgL~ 159 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQT---------LCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHH---------HHHcCCc
Confidence 23445555544422111 1111222 2223222
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHHhcC---CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhc
Q 000680 709 DLTEIGQRGLNLSGGQKQRIQLARAVYND---ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV 785 (1354)
Q Consensus 709 d~t~ig~~g~~LSgGQkqRv~lARal~~~---~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~ 785 (1354)
+. ..+++..+||||||||++||||+.++ |++++|||||++||++..+.+.+.+.....+|.|+|++||+++++..|
T Consensus 160 ~l-~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 160 YI-KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred hh-hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 21 24678899999999999999999996 799999999999999999998876655555689999999999999889
Q ss_pred CEEEEE------eCCeEEEecCh
Q 000680 786 DRILVL------EGGQITQSGNY 802 (1354)
Q Consensus 786 d~i~~l------~~G~i~~~g~~ 802 (1354)
|++++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-26 Score=231.12 Aligned_cols=165 Identities=24% Similarity=0.343 Sum_probs=134.3
Q ss_pred CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe------------EEEEeCCCCC-CCCcHH
Q 000680 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAYVSQTSWI-QSGSIR 675 (1354)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~------------i~yv~Q~~~~-~~~ti~ 675 (1354)
++..+.++||++.+||.+.|.|||||||||||++|.|+++|++|+|.++|. .-|+.-+|-+ ...|+.
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ 93 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTAL 93 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHH
Confidence 457899999999999999999999999999999999999999999999862 3455555555 567999
Q ss_pred HHHhcCCC----CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCcC
Q 000680 676 DNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751 (1354)
Q Consensus 676 eni~~g~~----~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~lD 751 (1354)
||+.|-.. -+.+...++++..+|.. ++. .+..+||-|||+||+|||-..+.+++.|||||+++||
T Consensus 94 ENL~F~~~~~~~~~~~~i~~Al~~vgL~g-~~d----------lp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLD 162 (209)
T COG4133 94 ENLHFWQRFHGSGNAATIWEALAQVGLAG-LED----------LPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162 (209)
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHcCccc-ccc----------cchhhcchhHHHHHHHHHHHcCCCCceeecCcccccC
Confidence 99998433 34567778888887753 333 3456899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh
Q 000680 752 AHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784 (1354)
Q Consensus 752 ~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~ 784 (1354)
.+....+-..+.....+|--||++||+.--+..
T Consensus 163 k~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 163 KEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 999886543333445678899999998765543
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-25 Score=291.39 Aligned_cols=94 Identities=27% Similarity=0.477 Sum_probs=84.2
Q ss_pred ccCCCCCCChHHHHHHHHHHHHh---cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEE
Q 000680 713 IGQRGLNLSGGQKQRIQLARAVY---NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1354)
Q Consensus 713 ig~~g~~LSgGQkqRv~lARal~---~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1354)
.++...+||||||||++||||++ .+|++|||||||++||++..+.+++.+.....+|+|+|+|||+++.+..+|+++
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi 882 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVL 882 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 36788899999999999999998 699999999999999999999998876655567899999999999997799999
Q ss_pred EEe------CCeEEEecChHHHH
Q 000680 790 VLE------GGQITQSGNYQELL 806 (1354)
Q Consensus 790 ~l~------~G~i~~~g~~~~l~ 806 (1354)
+|. +|++++.|+++++.
T Consensus 883 ~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 883 ELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEccCCCCCCCEEEEeCCHHHHH
Confidence 996 78999999888764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-26 Score=263.84 Aligned_cols=171 Identities=21% Similarity=0.362 Sum_probs=136.2
Q ss_pred HHhhHHHHHHHhhcCCCCCCCCCC------C---CCCCCCCCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEE
Q 000680 1179 NYIISVERIKQFMHIPPEPPAIVE------D---KRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVV 1249 (1354)
Q Consensus 1179 ~~~~sveRI~e~~~~~~E~~~~~~------~---~~~~~~wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIV 1249 (1354)
..+++++|+.+|+..+.|.....+ . ...+..||..|.|+|+|++++|+++.+++|+||||+|++||++|||
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 446778888888777665432111 1 0113469999999999999999765567999999999999999999
Q ss_pred CCCCccHHHHHHHHhcccC-----CCCCEEEEcCeeCC--CCChHHHhccCceecccccccccchhhhcC--C-CCCCCH
Q 000680 1250 GRTGSGKTTLISALFRLVE-----PAGGSILIDGVDIC--SMGLKDLRVKLSIIPQEPTLFRGSVRTNLD--P-LGLYSD 1319 (1354)
Q Consensus 1250 GrTGSGKSTL~~lL~R~~e-----~~~G~I~IDGvDI~--~i~l~~LR~~isiVpQdp~LF~GTIR~NLd--p-~~~~sD 1319 (1354)
||||||||||+++|+|+++ |++|+|.|||+||+ ++++.++|+++++|||+|.+|++|+++||+ | ++.++|
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~ 194 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND 194 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh
Confidence 9999999999999999997 57999999999997 567789999999999999999999999997 3 333555
Q ss_pred HHH-----HHHHHHcCCchHHhcCCCCcCCCCcccccc
Q 000680 1320 DEI-----WKALEKCQLKTTISSLPNKLDSSGKLFSAA 1352 (1354)
Q Consensus 1320 eeI-----~~AL~~a~l~~~I~~Lp~gldt~G~n~s~~ 1352 (1354)
++. .++++.+++++.+. ..++..|.++|.|
T Consensus 195 ~~~~~~~~~~~l~~~~L~~~l~---~~~~~~~~~LSgG 229 (329)
T PRK14257 195 RKILEKIVEKSLKSAALWDEVK---DDLDKAGNALSGG 229 (329)
T ss_pred HHHHHHHHHHHHHHcCCcchhh---hhhhCCcccCCHH
Confidence 554 56788888865442 4466778888865
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-26 Score=231.65 Aligned_cols=123 Identities=37% Similarity=0.603 Sum_probs=108.5
Q ss_pred ceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------eEEEEeCCCCCCC-CcHHHHH
Q 000680 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQS-GSIRDNI 678 (1354)
Q Consensus 613 l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------~i~yv~Q~~~~~~-~ti~eni 678 (1354)
|+|+|+++++||+++|+|+||||||||+++|+|.++|++|+|.++| .++|++|++.+++ .|++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999987 4999999987754 579999
Q ss_pred hcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000680 679 LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1354)
Q Consensus 679 ~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s 748 (1354)
...++++++++.+++... ..+.++.++..||||||||++||||++++|++++||||||
T Consensus 80 -----~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLEDL-------LDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGGG-------TGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----cccccccccccccccccc-------cccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 345567777777776542 2456778889999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-21 Score=219.31 Aligned_cols=452 Identities=17% Similarity=0.244 Sum_probs=264.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHH---HHHHHHhHHHHHhhHHHHHHHHHHH
Q 000680 325 IITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGE---IVNYIAVDAYRMGEFPFWFHLTWSL 401 (1354)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy~K~L~ls~~~~~~~~~G~---ivNlms~D~~~i~~~~~~~~~~w~~ 401 (1354)
++.++-.++.++.-.|...+++...|+-|+.-.|++=+.-..--+-....|. .=|-++.|+..+.+....+..-..-
T Consensus 164 ~liaiPAtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtK 243 (728)
T KOG0064|consen 164 FLIAIPASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTK 243 (728)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhh
Confidence 3334445566666677888999999999999999988753211000011122 2356888998888755544333334
Q ss_pred H-HHHHHHHHHHHHHH---hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHH
Q 000680 402 A-LQLFLAIGVLFGVV---GLGA--LPGLVLFLICGLLNVPFAKILQKCQSEF-------MIAQDERLRSTSEILNNMKI 468 (1354)
Q Consensus 402 p-lqi~~~~~~L~~~l---G~~~--l~gl~v~~i~~~l~~~~~~~~~~~q~~~-------~~~~D~R~~~~~E~L~~Ik~ 468 (1354)
| +.++++.+-|.... |.+. ++|+++. +. ++.++.++-+. ...+..--.+=+.++++-..
T Consensus 244 P~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~-----lT---a~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEE 315 (728)
T KOG0064|consen 244 PVLDLILISFTLLDSATSVGAAGITLAGLVVY-----LT---AFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEE 315 (728)
T ss_pred HHHHHHHHHHHHHhhhccccccchhhhhhHHH-----HH---HHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHH
Confidence 4 55666555554433 2211 2222221 11 22222222211 11111112355677888889
Q ss_pred HHHhchHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHH---HHHHHHH--HHHHHHHHHHHHhC-CCCCC-----HH
Q 000680 469 IKLQSWEEKFKSLIESRREKEFK---WLSEAQL-RKAYGTV---IYWMSPT--IISSVIFLGCALTG-SAPLN-----AS 533 (1354)
Q Consensus 469 IK~~~wE~~f~~~i~~~R~~El~---~l~~~~~-~~~~~~~---~~~~~p~--~v~~~~f~~~~l~~-~~~Lt-----~~ 533 (1354)
|-+|+-.+.-.+++++.-+.=.. .+.|... ......+ -.|.+.- ++++-.++.....+ .-++. -.
T Consensus 316 IAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt 395 (728)
T KOG0064|consen 316 IAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRT 395 (728)
T ss_pred HHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHH
Confidence 99998876666665554333111 1111110 0001001 0111110 00100011100011 00111 11
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCC-----c----chhh-------h--cccc----
Q 000680 534 TIFT-VLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD-HELN-----N----DDVR-------R--ISLQ---- 589 (1354)
Q Consensus 534 ~~Ft-~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~-~e~~-----~----~~~~-------~--~~~~---- 589 (1354)
..|+ .=-+.-.....+..+-.....+.|-..--.|+.+.+.- ++.. . +..+ + .+.+
T Consensus 396 ~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~ 475 (728)
T KOG0064|consen 396 KEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDA 475 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccch
Confidence 2232 22233333444555555555566655556676643320 1100 0 0000 0 0000
Q ss_pred -CCCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCC
Q 000680 590 -KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQT 666 (1354)
Q Consensus 590 -~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~ 666 (1354)
.....|.++|+-.--|.. ..+...+||+|++|..+.|+||||||||||.+.|.|+.|...|...... ++-|+||.
T Consensus 476 i~~~~gI~lenIpvItP~~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQR 553 (728)
T KOG0064|consen 476 IRNFNGIILENIPVITPAG--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQR 553 (728)
T ss_pred hhcccceEEecCceeccCc--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCC
Confidence 012357888877766643 3578999999999999999999999999999999999999999888753 69999999
Q ss_pred CCCCCCcHHHHHhcCC--------CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC
Q 000680 667 SWIQSGSIRDNILYGK--------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 667 ~~~~~~ti~eni~~g~--------~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~ 738 (1354)
|..--+|.||-|.+.. .+.+....+.++...|+.-++. ..|-+. +-+--.-||||+|||+++||..|++|
T Consensus 554 PYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr-~~g~da-~~dWkd~LsgGekQR~~mARm~yHrP 631 (728)
T KOG0064|consen 554 PYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR-EGGWDA-VRDWKDVLSGGEKQRMGMARMFYHRP 631 (728)
T ss_pred CccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHh-ccChhh-hccHHhhccchHHHHHHHHHHHhcCc
Confidence 9988899999998864 3445666777777777655443 222211 22223469999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEE
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1354)
Q Consensus 739 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1354)
+.-+|||.|||+-++++..||+.+. .-|-+.|-|||+++..+.-.+.+-.
T Consensus 632 kyalLDEcTsAvsidvE~~i~~~ak---~~gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 632 KYALLDECTSAVSIDVEGKIFQAAK---DAGISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred chhhhhhhhcccccchHHHHHHHHH---hcCceEEEeecCccHHHHHHHHHhc
Confidence 9999999999999999999998653 2478999999999987654444433
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-25 Score=285.27 Aligned_cols=203 Identities=21% Similarity=0.327 Sum_probs=173.9
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g-------------- 658 (1354)
.++.++|.++.|+.... +.+++|+.|++||+.++.|+|||||||++++|.|+.+|++|++.++|
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 57888999999986533 89999999999999999999999999999999999999999999976
Q ss_pred eEEEEeCCCCC-CCCcHHHHHhcCC---CCC----HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHH
Q 000680 659 SIAYVSQTSWI-QSGSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 659 ~i~yv~Q~~~~-~~~ti~eni~~g~---~~~----~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~l 730 (1354)
.+|||||+.-+ ...|.||++.+-. .+. ++..++.+++.+|.+..+ .+..++|||+|+|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~-----------~~~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYAN-----------KQVRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhc-----------cchhhCCCcchhhHHH
Confidence 39999998654 5779999997621 122 233556666666665543 3467899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChHHHHhc
Q 000680 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 731 ARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
|-|+..+|++++||||++|+||+.++++++.+....+.|+.+|++||.+++.+. |||+.+|.+|++...|+++++..+
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999999999999999998766655667799999999999987 999999999999999999998743
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-25 Score=220.55 Aligned_cols=188 Identities=25% Similarity=0.386 Sum_probs=143.0
Q ss_pred EEEEeeEEEeCCC----CCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc--C----------
Q 000680 595 VKIQEGNFSWDPE----LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--G---------- 658 (1354)
Q Consensus 595 i~~~~~~f~~~~~----~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~--g---------- 658 (1354)
+.++|+++++.-. -.-|+++|+||+++.||++++-||+|+||||||+++-|.|.|++|+|.+. |
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 4556665554321 12478999999999999999999999999999999999999999999874 2
Q ss_pred ---------eEEEEeCCC-CCCCCcHHHHHh-----cCCCCC--HHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCC
Q 000680 659 ---------SIAYVSQTS-WIQSGSIRDNIL-----YGKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1354)
Q Consensus 659 ---------~i~yv~Q~~-~~~~~ti~eni~-----~g~~~~--~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LS 721 (1354)
.||||+|.- .++.-+-.|-+. -|-+-+ ..+....+....+.+.+-.+ .+.+.|
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~L----------aPaTFS 154 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSL----------APATFS 154 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcC----------CCcccC
Confidence 489999973 344444444332 233322 12333344444444444333 357899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEe
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE 792 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~ 792 (1354)
||+||||.|||.++-|-+|+||||||++||+.+.+-+.+.+...+.+|..+|=+-||-+.-+. |||++.|.
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 999999999999999999999999999999999998887666667789999999999776655 79988774
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-24 Score=234.31 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=120.1
Q ss_pred eeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCc---------EEEEc----------CeEEEEeCCCCCCCCcH
Q 000680 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG---------TVNLY----------GSIAYVSQTSWIQSGSI 674 (1354)
Q Consensus 614 ~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G---------~i~~~----------g~i~yv~Q~~~~~~~ti 674 (1354)
+++++++++| +++|+||||||||||+++|.|.+++..| ++.+. .+|+|++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999998866532 34332 2689999999876
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCc
Q 000680 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY----NDADIYLFDDPFSAV 750 (1354)
Q Consensus 675 ~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~----~~~~illLDep~s~l 750 (1354)
|+.. ..++.+++++. + + ....+..+||||||||++||||+. ++|++++||||+++|
T Consensus 89 -----~~~~-~~~~~~~~l~~----------~--~--~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 89 -----YSII-SQGDVSEIIEA----------P--G--KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred -----eeEE-ehhhHHHHHhC----------C--C--ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 3221 23344444443 1 1 112567789999999999999986 577999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEe
Q 000680 751 DAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1354)
Q Consensus 751 D~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 792 (1354)
|+...+.+.+.+.+ ..++.|+|++||+++.+..+|+++.|.
T Consensus 149 D~~~~~~l~~~l~~-~~~~~tiIiitH~~~~~~~~d~v~~~~ 189 (197)
T cd03278 149 DDANVERFARLLKE-FSKETQFIVITHRKGTMEAADRLYGVT 189 (197)
T ss_pred CHHHHHHHHHHHHH-hccCCEEEEEECCHHHHhhcceEEEEE
Confidence 99999998875544 345789999999999988899999885
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-21 Score=232.31 Aligned_cols=386 Identities=17% Similarity=0.166 Sum_probs=262.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcc------hHHHHHhhcHHHHHhhhH
Q 000680 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVG------RILTRLSSDLSILDFDIP 1010 (1354)
Q Consensus 937 ~~~iy~~l~~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G------~IlnRfs~Di~~id~~l~ 1010 (1354)
.+.+|..+..+..++...+.++......+....|-+.++++-+.-- +||-....| ..=.|+..|+...-....
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~ 166 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTL 166 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhHH
Confidence 4567777777777777788888888888888888888888888776 555444443 234788899887666544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000680 1011 FSIVFVAASGTELLAIIGIMTFV---------------TWQVLVVA----IFAMVAVRFVQRYYIATARELIRINGTTKA 1071 (1354)
Q Consensus 1011 ~~l~~~~~~~~~~i~~i~v~~~~---------------~~~l~l~~----l~~~~~~~~i~~~y~~~sr~l~rl~~~~~s 1071 (1354)
.....++.++++++...+++.-. ...+..++ +...++..++.+...+-.-+..+.|+.-|.
T Consensus 167 ~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~ 246 (604)
T COG4178 167 DLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY 246 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence 44455556666555555544311 11111111 122222334555555555666666666665
Q ss_pred hHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCccCh
Q 000680 1072 PVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAP 1150 (1354)
Q Consensus 1072 pl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~vl~~~g~ls~ 1150 (1354)
.+.. .-+....|-.|+-|+...++..+..+.-.+.+......+.++...-...+-+.+++- .+.+-....|+++.
T Consensus 247 ~Lvr----v~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~ 322 (604)
T COG4178 247 SLVR----VRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITF 322 (604)
T ss_pred HHHH----HHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChH
Confidence 4432 344566677888777766666665555444443333333333322222222222111 11122234789999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc------CCCCCCCCCCCCCCCCCCCCcceEEEEEEEEE
Q 000680 1151 GLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH------IPPEPPAIVEDKRPPSSWPFKGRIELRQLKIR 1224 (1354)
Q Consensus 1151 g~~gl~l~ya~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~------~~~E~~~~~~~~~~~~~wp~~G~I~f~nVsf~ 1224 (1354)
|.+..+.+-..++...+.|++..+..+..-.++..|+.++.+ .+++.+.... .+....-..+..|+|+|++..
T Consensus 323 G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l~ 401 (604)
T COG4178 323 GGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSLR 401 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeEE
Confidence 999999888889999999999999999999999999999863 2222211100 000000001468999999999
Q ss_pred eCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccccc
Q 000680 1225 YRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304 (1354)
Q Consensus 1225 Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~LF~ 1304 (1354)
-+++. ..|+++||+|+|||.+-|.|+||||||||+++|.|+++-.+|+|.+-. -+++-++||.|++=.
T Consensus 402 ~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~ 469 (604)
T COG4178 402 TPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQ 469 (604)
T ss_pred CCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCC
Confidence 87655 589999999999999999999999999999999999999999987751 156889999999999
Q ss_pred cchhhhcC-CCCC--CCHHHHHHHHHHcCCchHHhcCCC
Q 000680 1305 GSVRTNLD-PLGL--YSDDEIWKALEKCQLKTTISSLPN 1340 (1354)
Q Consensus 1305 GTIR~NLd-p~~~--~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1354)
||+|+=|. |... ++|+|+.++|.+|+|.+++.++.+
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~ 508 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE 508 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc
Confidence 99999995 4433 899999999999999999998764
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-24 Score=248.11 Aligned_cols=200 Identities=23% Similarity=0.340 Sum_probs=168.8
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEc--CeEEEEeCCCC-
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY--GSIAYVSQTSW- 668 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~--g~i~yv~Q~~~- 668 (1354)
...|.++|++|.|+.+. .+++++||-|..++.+++|||||+||||||+++.|++.|+.|.|.-. -.+++..|+--
T Consensus 387 ~pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e 464 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAE 464 (614)
T ss_pred CCeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHh
Confidence 45789999999998654 68999999999999999999999999999999999999999998754 35777788642
Q ss_pred --CCCCcHHHHHh--cCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEe
Q 000680 669 --IQSGSIRDNIL--YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1354)
Q Consensus 669 --~~~~ti~eni~--~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLD 744 (1354)
....+.-|+++ |......+.++..+..|+|..|.+.. ...+||+|||.||..||..+..|.+++||
T Consensus 465 ~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~----------p~~~LS~Gqr~rVlFa~l~~kqP~lLlLD 534 (614)
T KOG0927|consen 465 QLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVV----------PMSQLSDGQRRRVLFARLAVKQPHLLLLD 534 (614)
T ss_pred hcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccccc----------chhhcccccchhHHHHHHHhcCCcEEEec
Confidence 34668888886 44345678899999999999877643 34689999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE-EecChHHHH
Q 000680 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSGNYQELL 806 (1354)
Q Consensus 745 ep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 806 (1354)
|||++||..+...+-+ .++.. .-++|+||||..++.+ +++|.+++||.+. ..|.+....
T Consensus 535 EPtnhLDi~tid~lae-aiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 535 EPTNHLDIETIDALAE-AINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred CCCcCCCchhHHHHHH-HHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 9999999999887654 33322 3489999999999998 7999999999886 678877764
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-23 Score=224.77 Aligned_cols=180 Identities=17% Similarity=0.208 Sum_probs=126.6
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEee-CCeEEEEECCCCCCHHHHHHHHhCCc-cCCCcEEEE------------cCe
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIK-WAQKIAVCGSVGAGKSSLLYAILGEI-PKISGTVNL------------YGS 659 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~-~G~~~~ivG~~GsGKStLl~~i~g~~-~~~~G~i~~------------~g~ 659 (1354)
.|+++|.. +|..+ ++++|+.. +|++++|+||||||||||+++|.+.+ .+..+.... ...
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEE
Confidence 46777766 55422 56777654 58999999999999999999999643 333333322 125
Q ss_pred EEEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHHH--HHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhc-
Q 000680 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAI--KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN- 736 (1354)
Q Consensus 660 i~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~~--~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~- 736 (1354)
|++++|++...-...| +. ..+.+.+.+.+ +...+ .+.++.++.+||||||||++||||++.
T Consensus 78 v~~~f~~~~~~~~~~r----~~-gl~~~~~~~~~~l~~g~l-----------~~~l~~~~~~lS~G~~~r~~la~al~~~ 141 (213)
T cd03279 78 VSFTFQLGGKKYRVER----SR-GLDYDQFTRIVLLPQGEF-----------DRFLARPVSTLSGGETFLASLSLALALS 141 (213)
T ss_pred EEEEEEECCeEEEEEE----ec-CCCHHHHHHhhhhhhcch-----------HHHhcCCccccCHHHHHHHHHHHHHHhH
Confidence 8888888743221111 11 23333333321 11112 223356788999999999999999984
Q ss_pred ---------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeE
Q 000680 737 ---------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 737 ---------~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1354)
+|++++|||||++||+...+.+.+.+.....+++|+|++||+++++.. +|++++|++|.+
T Consensus 142 p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 142 EVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 679999999999999999999876554444458899999999999877 699999999854
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.9e-23 Score=222.37 Aligned_cols=154 Identities=21% Similarity=0.299 Sum_probs=122.3
Q ss_pred eeEEeeCCeEEEEECCCCCCHHHHHHHH----hCCccCCCcEEEE----------cCeEEEEeCCC-C----C-CCCcHH
Q 000680 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAI----LGEIPKISGTVNL----------YGSIAYVSQTS-W----I-QSGSIR 675 (1354)
Q Consensus 616 i~l~i~~G~~~~ivG~~GsGKStLl~~i----~g~~~~~~G~i~~----------~g~i~yv~Q~~-~----~-~~~ti~ 675 (1354)
.++++.+| +++|+||||||||||+++| .|..+|.+|.+.. ...|++++|++ + + .+.|+.
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 45667777 9999999999999999999 4999998875531 12699999988 2 1 234899
Q ss_pred HHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHH------HHHHHHHhcCCCEEEEeCCCCC
Q 000680 676 DNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR------IQLARAVYNDADIYLFDDPFSA 749 (1354)
Q Consensus 676 eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqR------v~lARal~~~~~illLDep~s~ 749 (1354)
||+.++. +++.++.+ .+.+.+||+||||| +++|||+..+|++++||||+++
T Consensus 95 ~~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~ 151 (204)
T cd03240 95 ENVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTN 151 (204)
T ss_pred hceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccc
Confidence 9998752 22222221 35677999999996 7899999999999999999999
Q ss_pred cCHHHHH-HHHHHHHHHhcC-CcEEEEEcCCcchhhhcCEEEEEeC
Q 000680 750 VDAHTAA-TLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEG 793 (1354)
Q Consensus 750 lD~~~~~-~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1354)
||+...+ .+.+.+.....+ ++|+|++||+++.+..||+++.|++
T Consensus 152 LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 152 LDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred cCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 9999999 887766544434 7899999999998888999999964
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-22 Score=224.33 Aligned_cols=138 Identities=57% Similarity=1.018 Sum_probs=126.4
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccC
Q 000680 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1354)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1354)
|.|+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 57999999999975444699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCccccc
Q 000680 1294 SIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSA 1351 (1354)
Q Consensus 1294 siVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~ 1351 (1354)
+++||+|.+|++|+++|++++...+++++.++++..++.+++..+|.|+++ ...++|.
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~ 142 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSV 142 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCH
Confidence 999999999999999999977667888999999999999999999999887 3455554
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-22 Score=221.79 Aligned_cols=200 Identities=24% Similarity=0.363 Sum_probs=137.0
Q ss_pred cEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCCCCc
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGS 673 (1354)
Q Consensus 594 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~~~~t 673 (1354)
.|.++|.+.+-. .+..+.|-|+.|-.|-..++|||||-||||||+.|..---..-- +=.+-||-|+-.-...|
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp----nIDvLlCEQEvvad~t~ 336 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP----NIDVLLCEQEVVADSTS 336 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC----CCceEeeeeeeeecCcH
Confidence 477777666543 34578999999999999999999999999999999753111000 11367888886655555
Q ss_pred HHHHHhcC---------------------CCCCHHHHHHHHH---Hhc-------cHHHHhcCCCCCcccccCCC-CCCC
Q 000680 674 IRDNILYG---------------------KPMDKARYDKAIK---ACA-------LDKDINNFDHGDLTEIGQRG-LNLS 721 (1354)
Q Consensus 674 i~eni~~g---------------------~~~~~~~~~~~~~---~~~-------l~~~l~~l~~gd~t~ig~~g-~~LS 721 (1354)
.-+.|+-. .....++.+++.+ +.+ ..+-+.. .|-..+..+++ ..+|
T Consensus 337 Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAG--LGFskEMQ~rPt~kFS 414 (807)
T KOG0066|consen 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAG--LGFSKEMQERPTTKFS 414 (807)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhh--cCCChhHhcCCccccC
Confidence 54444321 1111233333321 111 1112221 22233333444 6799
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEE-Ee
Q 000680 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QS 799 (1354)
Q Consensus 722 gGQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~ 799 (1354)
||-|-||+||||||..|-++.|||||++||-....++ ++.+.++ .||.++|+||-.|+.. |..|+.+++-++- +.
T Consensus 415 GGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWL-dNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYr 491 (807)
T KOG0066|consen 415 GGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWL-DNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYR 491 (807)
T ss_pred CceeeehhHHHHHhcCceeeeecCCccccccceeeeh-hhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhhhc
Confidence 9999999999999999999999999999999988876 3444444 3799999999999987 7889999887774 56
Q ss_pred cChHHH
Q 000680 800 GNYQEL 805 (1354)
Q Consensus 800 g~~~~l 805 (1354)
|+|.-+
T Consensus 492 GNY~~F 497 (807)
T KOG0066|consen 492 GNYTLF 497 (807)
T ss_pred chHHHH
Confidence 666544
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-22 Score=227.48 Aligned_cols=177 Identities=22% Similarity=0.259 Sum_probs=114.3
Q ss_pred CCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCC----------------ccCCCcEEEEcCeEEEEeCCCCCC---
Q 000680 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE----------------IPKISGTVNLYGSIAYVSQTSWIQ--- 670 (1354)
Q Consensus 610 ~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~----------------~~~~~G~i~~~g~i~yv~Q~~~~~--- 670 (1354)
..++++++ |++++|+||||||||||+++|.+. ..+.+|.....+.|.+++|++.-+
T Consensus 15 ~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~ 89 (243)
T cd03272 15 QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPI 89 (243)
T ss_pred CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCC
Confidence 34666665 889999999999999999999843 333334111122344444443110
Q ss_pred ---CCcHH-------HHHhcC-CCCCHHHHHHHHHHhccHHHHh--cCCCCCcc-------cccCCCCCCChHHHHHHHH
Q 000680 671 ---SGSIR-------DNILYG-KPMDKARYDKAIKACALDKDIN--NFDHGDLT-------EIGQRGLNLSGGQKQRIQL 730 (1354)
Q Consensus 671 ---~~ti~-------eni~~g-~~~~~~~~~~~~~~~~l~~~l~--~l~~gd~t-------~ig~~g~~LSgGQkqRv~l 730 (1354)
+.+++ +++.+. .....+.+...++.+++..+-. ..+.|..+ ..++++.+||||||||++|
T Consensus 90 ~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~l 169 (243)
T cd03272 90 DKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVAL 169 (243)
T ss_pred CCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHH
Confidence 11111 222111 1223344555555544432100 01122111 2357889999999999999
Q ss_pred HHHHh----cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEe
Q 000680 731 ARAVY----NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1354)
Q Consensus 731 ARal~----~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 792 (1354)
|||++ .+|++++|||||++||+...+.+.+.+.. ..+++|+|++||+.+....||++++|+
T Consensus 170 a~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~-~~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 170 ALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKE-LSDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHH-HhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 99997 36899999999999999999998876544 344788898999887777799999995
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-22 Score=235.07 Aligned_cols=184 Identities=27% Similarity=0.414 Sum_probs=149.5
Q ss_pred cceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe--------------EEEEeCCC----CCCCCc
Q 000680 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------------IAYVSQTS----WIQSGS 673 (1354)
Q Consensus 612 ~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~--------------i~yv~Q~~----~~~~~t 673 (1354)
.++|+||++.+||+++|.|-.|||+|-|+++|.|.-++.+|+|.++|+ |+|||.+- .+...+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 478999999999999999999999999999999998899999999984 99999873 467889
Q ss_pred HHHHHhcCC--------CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 674 IRDNILYGK--------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 674 i~eni~~g~--------~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
|++||.+.. ..+..+.++..+. ...+++.=..+ ......+||||.+|+|.|||.++.+|+++||||
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~--~~~~l~Ik~~s----~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDE 427 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAER--YIRRLRIKTPS----PEQPIGTLSGGNQQKVVLARWLATDPKVLILDE 427 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHH--HHHhcCcccCC----ccchhhcCCchhhhhHHHHHHHhcCCCEEEECC
Confidence 999998751 1222222222221 12222211111 124567899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhh-hcCEEEEEeCCeEEEecC
Q 000680 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGN 801 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~g~ 801 (1354)
||-|+|.-....||+.+.+...+|++||++|.++.++- .||||+||++|+|+..=+
T Consensus 428 PTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 428 PTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred CCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999887777789999999999998865 599999999999986433
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-22 Score=226.32 Aligned_cols=141 Identities=47% Similarity=0.780 Sum_probs=126.7
Q ss_pred CcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhc
Q 000680 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291 (1354)
Q Consensus 1212 ~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~ 1291 (1354)
..|.|+++|++++|......+|+|+||+|+|||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46789999999999654346999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1292 ~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
+++++||+|.+|.+|+++|+++.....+++++++++.+++.+.+..+|.|+++ .+.++|.|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G 160 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVG 160 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHH
Confidence 99999999999999999999876445677889999999999999999988886 35566643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.4e-22 Score=252.98 Aligned_cols=108 Identities=24% Similarity=0.473 Sum_probs=92.6
Q ss_pred HhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCC
Q 000680 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA---DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778 (1354)
Q Consensus 702 l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~---~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~ 778 (1354)
++.+..++.+ .+++..+||||||||+.|||++.++| ++|||||||++||++..+.+.+.+.....+|+|+|+|||+
T Consensus 814 L~~vgL~~l~-l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~ 892 (943)
T PRK00349 814 LVDVGLGYIK-LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHN 892 (943)
T ss_pred HHHCCCCccc-ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 3334444322 46788999999999999999999999 9999999999999999999887655554578999999999
Q ss_pred cchhhhcCEEEEE------eCCeEEEecChHHHHhcCc
Q 000680 779 VEFLSEVDRILVL------EGGQITQSGNYQELLLAGT 810 (1354)
Q Consensus 779 ~~~l~~~d~i~~l------~~G~i~~~g~~~~l~~~~~ 810 (1354)
++.+..||+|+.| ++|+|++.|+++++.+...
T Consensus 893 ~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 893 LDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred HHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 9999889999999 7999999999999986553
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-22 Score=224.01 Aligned_cols=169 Identities=20% Similarity=0.231 Sum_probs=125.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHhCCccCC-CcEEEEcC----------------eEEEEeCCCC----------CCCCcHH
Q 000680 623 AQKIAVCGSVGAGKSSLLYAILGEIPKI-SGTVNLYG----------------SIAYVSQTSW----------IQSGSIR 675 (1354)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~i~g~~~~~-~G~i~~~g----------------~i~yv~Q~~~----------~~~~ti~ 675 (1354)
..+++|+||||||||||+++|.+.+.+. .|++...+ +|++++|++. .+..||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 4599999999999999999999998775 34544321 6899999862 1246888
Q ss_pred HHHhcCCC---------CCHHHHHHHHHHhccHHH-Hh-cCCCCCc-------ccccCCCCCCChHHHHHHHHHHHHh--
Q 000680 676 DNILYGKP---------MDKARYDKAIKACALDKD-IN-NFDHGDL-------TEIGQRGLNLSGGQKQRIQLARAVY-- 735 (1354)
Q Consensus 676 eni~~g~~---------~~~~~~~~~~~~~~l~~~-l~-~l~~gd~-------t~ig~~g~~LSgGQkqRv~lARal~-- 735 (1354)
+|+..+.. ...+++.+.++.+++..| .. .++.|+- .....++.+||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88866532 123456666666666421 00 0111111 1234678899999999999999998
Q ss_pred --cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEe
Q 000680 736 --NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1354)
Q Consensus 736 --~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 792 (1354)
.+|+++++||||++||+...+++++.+.+. .+|.|+|++||+.+.+..||+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~-~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTH-FKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 588999999999999999999988765443 56889999999988888899998774
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-22 Score=223.59 Aligned_cols=173 Identities=21% Similarity=0.200 Sum_probs=125.9
Q ss_pred EeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--------------------eEEEEeCCCC--CCCCcHHH
Q 000680 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------------SIAYVSQTSW--IQSGSIRD 676 (1354)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--------------------~i~yv~Q~~~--~~~~ti~e 676 (1354)
...++ +++|+||||||||||+.+|.+.+.+..|++...+ .+.|..|++- +...++++
T Consensus 19 ~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~ 97 (247)
T cd03275 19 GPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITG 97 (247)
T ss_pred cCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEEC
Confidence 33344 9999999999999999999998877666554311 1334344321 12223332
Q ss_pred HHh----cCCCCCHHHHHHHHHHhccHHHHhc--CCCCCcccccC---------CCCCCChHHHHHHHHHHHHhc----C
Q 000680 677 NIL----YGKPMDKARYDKAIKACALDKDINN--FDHGDLTEIGQ---------RGLNLSGGQKQRIQLARAVYN----D 737 (1354)
Q Consensus 677 ni~----~g~~~~~~~~~~~~~~~~l~~~l~~--l~~gd~t~ig~---------~g~~LSgGQkqRv~lARal~~----~ 737 (1354)
.-. -+.+.+++.|++.++.|++..+... .+.|+.+.+.+ +..+||||||||++||||++. +
T Consensus 98 ~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~ 177 (247)
T cd03275 98 GSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQP 177 (247)
T ss_pred CceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCC
Confidence 211 1344667888999999998755332 34555555533 237899999999999999976 4
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEe
Q 000680 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1354)
Q Consensus 738 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~ 792 (1354)
|++++|||||++||+....++.+.+.....+|.|+|+|||+.+.+..||++++|.
T Consensus 178 p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 178 APFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 9999999999999999999988765554445889999999998888899999885
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-22 Score=201.37 Aligned_cols=184 Identities=26% Similarity=0.414 Sum_probs=148.2
Q ss_pred cceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-------------EEEEeCCC-CCCCCcHHHH
Q 000680 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------IAYVSQTS-WIQSGSIRDN 677 (1354)
Q Consensus 612 ~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~-------------i~yv~Q~~-~~~~~ti~en 677 (1354)
-|-.+|.++..||+.-+||||||||||||..++|+. |-+|+|.+.|. -+|.+|+. -.+.+-|...
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 366789999999999999999999999999999976 56899999983 58998874 3567788888
Q ss_pred HhcCCCCCHHH---HHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhc-------CCCEEEEeCCC
Q 000680 678 ILYGKPMDKAR---YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN-------DADIYLFDDPF 747 (1354)
Q Consensus 678 i~~g~~~~~~~---~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~-------~~~illLDep~ 747 (1354)
+....|. +++ .+.+.+..++.+ .+|+....||||+-|||-||-.+.+ +.+++++|||.
T Consensus 93 L~L~qP~-~~~a~~i~~i~~~L~l~D-----------KL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~ 160 (248)
T COG4138 93 LTLHQPD-KTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPM 160 (248)
T ss_pred hhhcCch-HHHHHHHHHHHhhhcccc-----------hhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCC
Confidence 8876663 332 223333223322 2456778999999999999988876 44699999999
Q ss_pred CCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcch-hhhcCEEEEEeCCeEEEecChHHHHhc
Q 000680 748 SAVDAHTAATLFNECVMAALEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 748 s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~-l~~~d~i~~l~~G~i~~~g~~~~l~~~ 808 (1354)
++||......+...+.....+|.|||+..||++. +++||++..++.|++...|..+|++..
T Consensus 161 ~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 161 NSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred cchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 9999998887755444556789999999999975 888999999999999999999998754
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-21 Score=213.18 Aligned_cols=118 Identities=53% Similarity=0.988 Sum_probs=108.2
Q ss_pred CCCcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHH
Q 000680 1210 WPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL 1289 (1354)
Q Consensus 1210 wp~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~L 1289 (1354)
||..+.++++|++++|.....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999996533469999999999999999999999999999999999999999999999999999999899
Q ss_pred hccCceecccccccccchhhhcCCCCCCCHHHHHHHHH
Q 000680 1290 RVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALE 1327 (1354)
Q Consensus 1290 R~~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~ 1327 (1354)
|++++++||+|.+|++|+++|+..+..++++++.++++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~ 118 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR 118 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh
Confidence 99999999999999999999997665566777777776
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-22 Score=201.10 Aligned_cols=134 Identities=24% Similarity=0.427 Sum_probs=116.5
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHH---Hhcc
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LRVK 1292 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~---LR~~ 1292 (1354)
|+|+||+.+|..+ +++|+||||+|++||.+=++|+|||||||++++|+|...|++|+|.++|.|++++.-++ ||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999876 67999999999999999999999999999999999999999999999999999988554 7999
Q ss_pred Cceeccccccccc-chhhhcC-CCC--CCC----HHHHHHHHHHcCCchHHhcCCCCcCCCCccccc
Q 000680 1293 LSIIPQEPTLFRG-SVRTNLD-PLG--LYS----DDEIWKALEKCQLKTTISSLPNKLDSSGKLFSA 1351 (1354)
Q Consensus 1293 isiVpQdp~LF~G-TIR~NLd-p~~--~~s----DeeI~~AL~~a~l~~~I~~Lp~gldt~G~n~s~ 1351 (1354)
||+|.||--|... |+.||+. |.. ..+ .+.+.++|+.++|.+-...+|..|. +|++=++
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LS-GGEQQRv 146 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLS-GGEQQRV 146 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccC-chHHHHH
Confidence 9999999998865 9999985 332 123 3457789999999999999998764 4554443
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9e-22 Score=248.77 Aligned_cols=189 Identities=24% Similarity=0.357 Sum_probs=159.6
Q ss_pred CCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEEcC----------eEEEEeCCC-CCCCCcHH
Q 000680 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--KISGTVNLYG----------SIAYVSQTS-WIQSGSIR 675 (1354)
Q Consensus 609 ~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~--~~~G~i~~~g----------~i~yv~Q~~-~~~~~ti~ 675 (1354)
.+.+|+||+=-++||.++|++|++||||||||+.|+|-.. ..+|+|.++| .+|||.|+. .+...|||
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVr 882 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVR 882 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchH
Confidence 4578999999999999999999999999999999999643 3578888988 489999986 46788999
Q ss_pred HHHhcCC------CCC-H---HHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCC-CEEEEe
Q 000680 676 DNILYGK------PMD-K---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA-DIYLFD 744 (1354)
Q Consensus 676 eni~~g~------~~~-~---~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~-~illLD 744 (1354)
|-+.|.. ..+ + +..++|++..+|++-- +..||..|..||.+||+|+.||--|..|| .|++||
T Consensus 883 ESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLD 955 (1391)
T KOG0065|consen 883 ESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLD 955 (1391)
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCceeEEec
Confidence 9998852 122 2 3346677766665432 34689999999999999999999999999 899999
Q ss_pred CCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcch--hhhcCEEEEEe-CCeEEEecChHH
Q 000680 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF--LSEVDRILVLE-GGQITQSGNYQE 804 (1354)
Q Consensus 745 ep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~--l~~~d~i~~l~-~G~i~~~g~~~~ 804 (1354)
|||||||++++..+.+.+.+....|+||+..-|+++- .+..|+++.|+ +|+.++.|+..+
T Consensus 956 EPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 956 EPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred CCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999999999988777777899999999999974 56789999995 789999998765
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.7e-21 Score=243.68 Aligned_cols=93 Identities=29% Similarity=0.532 Sum_probs=84.7
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhc---CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEE
Q 000680 713 IGQRGLNLSGGQKQRIQLARAVYN---DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1354)
Q Consensus 713 ig~~g~~LSgGQkqRv~lARal~~---~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1354)
++++..+||||||||++|||++.. +|++|+|||||++||+...+.+.+.+.....+|+|+|++||+++.+..||+|+
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii 901 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYII 901 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 477889999999999999999997 59999999999999999999998766555557899999999999998899999
Q ss_pred EE------eCCeEEEecChHHH
Q 000680 790 VL------EGGQITQSGNYQEL 805 (1354)
Q Consensus 790 ~l------~~G~i~~~g~~~~l 805 (1354)
+| ++|+|++.|+++++
T Consensus 902 ~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 902 DLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EecCCccCCCCEEEEeCCHHHh
Confidence 99 79999999998875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-21 Score=212.79 Aligned_cols=199 Identities=21% Similarity=0.381 Sum_probs=154.1
Q ss_pred CcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCCC--
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSW-- 668 (1354)
Q Consensus 593 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~~-- 668 (1354)
..+-+.|++|.|+.. .|.+++++|-|.-...+|||||||.||||||++|+|.+.|++|+.+-+- +||+..|+..
T Consensus 585 PvLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~ 662 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEA 662 (807)
T ss_pred CeeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHh
Confidence 456788999999854 5899999999999999999999999999999999999999999987654 6999999753
Q ss_pred C-CCCcHHHHHhcCCCCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCC
Q 000680 669 I-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF 747 (1354)
Q Consensus 669 ~-~~~ti~eni~~g~~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~ 747 (1354)
+ ...|--|.+.-+-..+-+..++.+-..+|..-.. | -+...||||||.||+||-..++.|||+||||||
T Consensus 663 L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAH-------T---ikikdLSGGQKaRValaeLal~~PDvlILDEPT 732 (807)
T KOG0066|consen 663 LNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAH-------T---IKIKDLSGGQKARVALAELALGGPDVLILDEPT 732 (807)
T ss_pred hccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccc-------e---EeeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence 2 2347777775433334444455666666543221 2 245679999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhc-CEEEEEeCCeEEE-ecChHHHH
Q 000680 748 SAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQ-SGNYQELL 806 (1354)
Q Consensus 748 s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~-d~i~~l~~G~i~~-~g~~~~l~ 806 (1354)
++||.++...+-+. ++.. +..||+||||-..+... -..+|+++-.|-+ .|.++++.
T Consensus 733 NNLDIESIDALaEA-Iney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYk 790 (807)
T KOG0066|consen 733 NNLDIESIDALAEA-INEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYK 790 (807)
T ss_pred CCcchhhHHHHHHH-HHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHHHH
Confidence 99999998876543 3332 34899999999998775 4567777766653 56666654
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-21 Score=220.12 Aligned_cols=200 Identities=23% Similarity=0.381 Sum_probs=162.4
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC--eEEEEeCCC--
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTS-- 667 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g--~i~yv~Q~~-- 667 (1354)
...+++.+++|.|+++.. +.+.++++++..-+..+++|+||+||||+++++.|+..|..|.+.+.+ +++|-.|.-
T Consensus 360 ~p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd 438 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVD 438 (582)
T ss_pred CCeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhh
Confidence 356899999999997654 799999999999999999999999999999999999999999998887 699999974
Q ss_pred CCC-CCcHHHHHhcCC-CCCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000680 668 WIQ-SGSIRDNILYGK-PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1354)
Q Consensus 668 ~~~-~~ti~eni~~g~-~~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDe 745 (1354)
|+. +-+.-|-..-.. ...++.|++.+...+|..++..- ...+||||||-||++|.+...+|.+|+|||
T Consensus 439 ~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~----------si~~LSGGQKsrvafA~~~~~~PhlLVLDE 508 (582)
T KOG0062|consen 439 FLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQ----------SIASLSGGQKSRVAFAACTWNNPHLLVLDE 508 (582)
T ss_pred HHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhc----------cccccCCcchhHHHHHHHhcCCCcEEEecC
Confidence 321 112222222111 12678899999999998887642 246799999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEE-ecChHHH
Q 000680 746 PFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ-SGNYQEL 805 (1354)
Q Consensus 746 p~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~-~g~~~~l 805 (1354)
||++||.++-..+-+-+ +. .+ -.||+||||.++++. |+.+.+.+||++.. .|..++.
T Consensus 509 PTNhLD~dsl~AL~~Al-~~-F~-GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~y 567 (582)
T KOG0062|consen 509 PTNHLDRDSLGALAKAL-KN-FN-GGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKY 567 (582)
T ss_pred CCccccHHHHHHHHHHH-Hh-cC-CcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHHH
Confidence 99999999987765422 21 23 489999999999997 89999999999984 5555443
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-21 Score=205.50 Aligned_cols=134 Identities=31% Similarity=0.467 Sum_probs=116.2
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
|+|+||+++|.+ ..+++|+||+|++||.+.++|+|||||||+++.+.|++||++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999973 359999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccc-chhhhcC--CC-CCCC----HHHHHHHHHHcCCc--hHHhcCCCCcCCCCcccccc
Q 000680 1296 IPQEPTLFRG-SVRTNLD--PL-GLYS----DDEIWKALEKCQLK--TTISSLPNKLDSSGKLFSAA 1352 (1354)
Q Consensus 1296 VpQdp~LF~G-TIR~NLd--p~-~~~s----DeeI~~AL~~a~l~--~~I~~Lp~gldt~G~n~s~~ 1352 (1354)
|-|..-||.- ||.+||. |- ...+ ++.+.+-|+.++|. +|-...|..| ++|++=++|
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eL-SGGQQQRVG 145 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL-SGGQQQRVG 145 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhc-CcchhhHHH
Confidence 9999999965 9999994 32 1123 45677889999996 5888889876 445544444
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.5e-21 Score=213.07 Aligned_cols=137 Identities=32% Similarity=0.549 Sum_probs=120.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
|+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.|+...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57999999996544569999999999999999999999999999999999999999999999999999888889999999
Q ss_pred ecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCcccccc
Q 000680 1296 IPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1296 VpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
+||+|.+|+.|+++||.... ..+.+++.++++..++.+++..+|.|+++ ...++|-|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG 142 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGG 142 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHH
Confidence 99999999999999997432 24567788889999999999999888765 45666643
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.7e-21 Score=197.81 Aligned_cols=128 Identities=34% Similarity=0.520 Sum_probs=110.6
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCC-CCChHHHhccC
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC-SMGLKDLRVKL 1293 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~-~i~l~~LR~~i 1293 (1354)
-|+++||+.+|.. ..||||||++|++||.|.|+||||||||||+.+|.++-+|++|+|.|||.++. +.++..+|+++
T Consensus 2 mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 4899999999964 35999999999999999999999999999999999999999999999998874 34899999999
Q ss_pred ceeccccccccc-chhhhcC--CCC--CCC----HHHHHHHHHHcCCchHHhcCCCCcCC
Q 000680 1294 SIIPQEPTLFRG-SVRTNLD--PLG--LYS----DDEIWKALEKCQLKTTISSLPNKLDS 1344 (1354)
Q Consensus 1294 siVpQdp~LF~G-TIR~NLd--p~~--~~s----DeeI~~AL~~a~l~~~I~~Lp~gldt 1344 (1354)
|+|+|...||.- |+-+|+. |-. ..+ ++.-.+.|++++|.|.....|..|..
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSG 139 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSG 139 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCc
Confidence 999999999976 9999984 211 112 33456789999999999999988754
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-20 Score=209.75 Aligned_cols=130 Identities=36% Similarity=0.593 Sum_probs=117.9
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccC
Q 000680 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1354)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1354)
|+|+++|++++|..+ .++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 579999999999633 3599999999999999999999999999999999999999999999999999998888999999
Q ss_pred ceecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC
Q 000680 1294 SIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS 1344 (1354)
Q Consensus 1294 siVpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt 1344 (1354)
+++||+|.+|.+|+++|+..+. ...++++.++++.+++.++++.+|+|+++
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 131 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDT 131 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccC
Confidence 9999999999999999996432 34577888999999999999999988875
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-18 Score=191.56 Aligned_cols=222 Identities=15% Similarity=0.296 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcchHHHHHhhcHHHHHhhhHHHHHHHHHHHHHHHH
Q 000680 946 TASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLA 1025 (1354)
Q Consensus 946 ~~~~i~~~~~~~~~~~~~~~~s~~l~~~l~~~ll~~p~~fFd~~p~G~IlnRfs~Di~~id~~l~~~l~~~~~~~~~~i~ 1025 (1354)
++...+.....+...+.+.+..+++++++++++++.|.+||+++++|+++||+++|++.+++.+...+..++..+..+++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~ 131 (275)
T PF00664_consen 52 LLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIF 131 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhh
Confidence 33444445555556788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhcchHHHHhcccHHHHHHHHHHHHH
Q 000680 1026 IIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVD 1105 (1354)
Q Consensus 1026 ~i~v~~~~~~~l~l~~l~~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~s~~~Etl~Gl~tIRaf~~e~~f~~~~~~~~d 1105 (1354)
.+++++..+|+++++.+...+++.++..++.+..++..+...+..++..+++.|.++|+++||+|+.|+++.+++.+..+
T Consensus 132 ~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~ 211 (275)
T PF00664_consen 132 SLILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALE 211 (275)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhcccccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-hcCCccChhHHHHHHHHHHHHHHHH
Q 000680 1106 IDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVL-IPRGYVAPGLVGLSLSYAFTLTGTQ 1167 (1354)
Q Consensus 1106 ~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~-~~~~vl-~~~g~ls~g~~gl~l~ya~~l~~~l 1167 (1354)
+..+........+.|.....+.+..+....+ .+.... ...|.+++|.+..+++|...+.+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 212 KYRKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 9999998888888898888888777744333 334556 6789999999999999998888774
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-20 Score=204.99 Aligned_cols=131 Identities=27% Similarity=0.469 Sum_probs=113.0
Q ss_pred EEEEEEEEEeCCC---CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCC---hHHH
Q 000680 1216 IELRQLKIRYRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDL 1289 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~---~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~---l~~L 1289 (1354)
|+|+||+..|... ...+|+||||+|++||..||||+||||||||+.++-|+-+|++|+|.+||.||..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999752 246999999999999999999999999999999999999999999999999888776 6667
Q ss_pred hccCceecccccccc-cchhhhcC-CCC--CCCHH----HHHHHHHHcCCchHHhcCCCCcCCCC
Q 000680 1290 RVKLSIIPQEPTLFR-GSVRTNLD-PLG--LYSDD----EIWKALEKCQLKTTISSLPNKLDSSG 1346 (1354)
Q Consensus 1290 R~~isiVpQdp~LF~-GTIR~NLd-p~~--~~sDe----eI~~AL~~a~l~~~I~~Lp~gldt~G 1346 (1354)
|++||+|+|++-|++ -|+.+|+. |.. ..+.+ .+.+.|+.+||.|.-..-|..|..+.
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQ 146 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQ 146 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcch
Confidence 899999999999998 69999995 542 23444 45678999999999988888765443
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-21 Score=213.94 Aligned_cols=181 Identities=15% Similarity=0.134 Sum_probs=121.7
Q ss_pred EEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCCCCC-CCc
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ-SGS 673 (1354)
Q Consensus 595 i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~~~~-~~t 673 (1354)
++++|.. +|. ...+++++++ ++++|+|||||||||++++|.-.+-...... ..++++|++|+.... +.|
T Consensus 6 l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~-~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 6 LVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM-RQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred EEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh-hhhhHHHHhcCCCCCCCCc
Confidence 4555543 454 3457888887 8999999999999999999972111100011 124689999987653 457
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhcc-------------HHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhc----
Q 000680 674 IRDNILYGKPMDKARYDKAIKACAL-------------DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN---- 736 (1354)
Q Consensus 674 i~eni~~g~~~~~~~~~~~~~~~~l-------------~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~---- 736 (1354)
++++..+-...... ..++..+. ..++..++++.+ .+...||||||||++||||++.
T Consensus 76 ~~~~~~~~~~~~~~---~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~----~~~~~lS~G~~~r~~la~al~~~~~~ 148 (212)
T cd03274 76 SCSVEVHFQEIIDK---PLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSW----KNISNLSGGEKTLSSLALVFALHHYK 148 (212)
T ss_pred eEEEEEEEEeCCCH---HHHHHCCcCCCCCceEEcCCcEEEeeccccccc----cchhhcCHHHHHHHHHHHHHHhcccC
Confidence 77776653321100 00100000 011222333322 3466899999999999999974
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhhcCEEEEEeC
Q 000680 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEG 793 (1354)
Q Consensus 737 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1354)
+|++++|||||++||++..+.+.+.+.. ..++.|+|++||+.+....||++++|..
T Consensus 149 ~p~ililDEPt~gLD~~~~~~l~~~l~~-~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSIVANYIKE-RTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHH-HcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 5899999999999999999988765544 4567799999999877777999999953
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-20 Score=204.59 Aligned_cols=123 Identities=27% Similarity=0.468 Sum_probs=108.8
Q ss_pred EEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhcc
Q 000680 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~---~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~ 1292 (1354)
|+++||+++|.+.. +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997542 3699999999999999999999999999999999999999999999999 6
Q ss_pred CceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCccccc
Q 000680 1293 LSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSA 1351 (1354)
Q Consensus 1293 isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~ 1351 (1354)
++++||+|.+|++|+++|+......++++.+++++.+++.+++..+|.|+++ ...++|.
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~ 130 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSG 130 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCH
Confidence 9999999999999999999865455677888999999999999999988765 3445554
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-20 Score=209.32 Aligned_cols=179 Identities=22% Similarity=0.351 Sum_probs=137.5
Q ss_pred eeEEEeCCCCCCCcceeeeEEee-----CCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeEEEEeCCC-CCCCC
Q 000680 599 EGNFSWDPELAIPTLRGVNLDIK-----WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS-WIQSG 672 (1354)
Q Consensus 599 ~~~f~~~~~~~~~~l~~i~l~i~-----~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i~yv~Q~~-~~~~~ 672 (1354)
+.-++|+.- ...+.+..|++. .||+++++||||-||||+.+.|+|.++|++|. ..+-+|+|=||-- --+++
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~~vSyKPQyI~~~~~g 416 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDLKVSYKPQYISPDYDG 416 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-CccceEeecceeecCCCCC
Confidence 344556542 235667777655 46889999999999999999999999999998 5555899999963 34899
Q ss_pred cHHHHHhcCCC--CCHHHHH-HHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 000680 673 SIRDNILYGKP--MDKARYD-KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1354)
Q Consensus 673 ti~eni~~g~~--~~~~~~~-~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~~~~~illLDep~s~ 749 (1354)
||++-+.-..+ +...+|+ ++++-..|++-++ .+..+||||+.|||++|-||.+++|+||||||.+.
T Consensus 417 tV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e-----------~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~ 485 (591)
T COG1245 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLE-----------RPVDELSGGELQRVAIAAALSREADLYLLDEPSAY 485 (591)
T ss_pred cHHHHHHHhhhhhcccchhHHhhcCccchHHHHh-----------cccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence 99998764322 3334443 4555555655444 45678999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHH--hcCCcEEEEEcCCcchhhh-cCEEEEEe
Q 000680 750 VDAHTAATLFNECVMA--ALEKKTVILVTHQVEFLSE-VDRILVLE 792 (1354)
Q Consensus 750 lD~~~~~~i~~~~~~~--~~~~~tvilvtH~~~~l~~-~d~i~~l~ 792 (1354)
||.+.+-.+- .+++. ..+++|.++|-||+-.+.. +||++|.+
T Consensus 486 LDvEqR~~va-kvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 486 LDVEQRIIVA-KVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred ccHHHHHHHH-HHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 9998766543 34433 2357899999999999998 79999985
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-20 Score=206.69 Aligned_cols=140 Identities=31% Similarity=0.515 Sum_probs=119.5
Q ss_pred CcceEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHh
Q 000680 1212 FKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290 (1354)
Q Consensus 1212 ~~G~I~f~nVsf~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR 1290 (1354)
..|.++++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45789999999999642 23599999999999999999999999999999999999999999999999999988888889
Q ss_pred ccCceecccccccccchhhhcCC-CCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCccccc
Q 000680 1291 VKLSIIPQEPTLFRGSVRTNLDP-LGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSA 1351 (1354)
Q Consensus 1291 ~~isiVpQdp~LF~GTIR~NLdp-~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~ 1351 (1354)
++++++||+|.+|.+|+++|++. ....+.+++++..+..++.++++.+|.|+++ ...++|-
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSg 153 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSG 153 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCH
Confidence 99999999999999999999973 2233456677777788888999988877654 3445553
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-20 Score=207.85 Aligned_cols=135 Identities=34% Similarity=0.598 Sum_probs=120.0
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
|+++|++++|..+ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++++.+...+|+.+++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5799999999643 349999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCccccc
Q 000680 1296 IPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSA 1351 (1354)
Q Consensus 1296 VpQdp~LF~GTIR~NLdp~-~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~ 1351 (1354)
+||+|.+|++|+++|+... ...+++++.++++.+++.+.+..+|.|+++ ...++|.
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~ 140 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSG 140 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCH
Confidence 9999999999999999633 235678889999999999999999998776 3445554
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-20 Score=199.29 Aligned_cols=159 Identities=14% Similarity=0.138 Sum_probs=113.4
Q ss_pred ceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCC-----cE----EEE----cCeEEEEeCCCCCCCCcHHHHHh
Q 000680 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS-----GT----VNL----YGSIAYVSQTSWIQSGSIRDNIL 679 (1354)
Q Consensus 613 l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~-----G~----i~~----~g~i~yv~Q~~~~~~~ti~eni~ 679 (1354)
++++++++.+| +.+|+||||||||||+.+|...+.... |. +.- ...|.+.+|+.-+.. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~-- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N-- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C--
Confidence 46778888887 889999999999999999874322211 21 000 124777777654333 1
Q ss_pred cCCCC--CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCcCHH
Q 000680 680 YGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDAH 753 (1354)
Q Consensus 680 ~g~~~--~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal----~~~~~illLDep~s~lD~~ 753 (1354)
... ..++.+++++. .+ ...++..+||||||||++||||+ +.+|++++||||+++||+.
T Consensus 84 --~~~~~~~~~~~~~l~~------------~~--~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 --PLCVLSQDMARSFLTS------------NK--AAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred --cCCHHHHHHHHHHhcc------------cc--ccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 111 11222233322 11 12367789999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHHHHhcC---CcEEEEEcCCcchhhhcCEEEEEeCCe
Q 000680 754 TAATLFNECVMAALE---KKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1354)
Q Consensus 754 ~~~~i~~~~~~~~~~---~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1354)
....+.+.+.....+ ++|+|++||+++.+...|+|-+|..|+
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 999988765554332 358999999999999899999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-20 Score=193.97 Aligned_cols=132 Identities=27% Similarity=0.439 Sum_probs=112.6
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCC-----CEEEEcCeeCCC--CCh
Q 000680 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG-----GSILIDGVDICS--MGL 1286 (1354)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~-----G~I~IDGvDI~~--i~l 1286 (1354)
..++++|+++-|.. ..+|+|||++|++++.+|++|||||||||++++|-|+.|..+ |+|.+||.||-+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 36899999999963 359999999999999999999999999999999999999876 999999999987 579
Q ss_pred HHHhccCceecccccccccchhhhcCCC----CC---CCHHHHHHHHHHcCCchHHhcCCCCcCCCCcccc
Q 000680 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPL----GL---YSDDEIWKALEKCQLKTTISSLPNKLDSSGKLFS 1350 (1354)
Q Consensus 1287 ~~LR~~isiVpQdp~LF~GTIR~NLdp~----~~---~sDeeI~~AL~~a~l~~~I~~Lp~gldt~G~n~s 1350 (1354)
..||+++|+|+|.|.-|..||+||+... +. .=||-+.++|++|.|||-|. +.|+..+-.+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK---DrL~~sa~~LS 151 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK---DRLHKSALGLS 151 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH---HHhhCCccCCC
Confidence 9999999999999999999999999532 11 12455788999999999885 44555444444
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.1e-20 Score=203.22 Aligned_cols=132 Identities=36% Similarity=0.612 Sum_probs=117.7
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccC
Q 000680 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1354)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1354)
|+|+++|++++|.....++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++.+++...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 56999999999964334599999999999999999999999999999999999999999999999999988888889999
Q ss_pred ceecccccccccchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcCCCCcCCC
Q 000680 1294 SIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSS 1345 (1354)
Q Consensus 1294 siVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt~ 1345 (1354)
+++||+|.+|..|+++|+... ...+++++.++++..++.+....+|.|+++.
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 133 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQ 133 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccce
Confidence 999999999999999999633 2245677889999999999999999888763
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-20 Score=205.52 Aligned_cols=129 Identities=30% Similarity=0.508 Sum_probs=115.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
|+++|++++|.....++|+|+||++++||.+||+|++|||||||+++|.|++.|++|+|.+||.++.+.+.+.+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57999999996443359999999999999999999999999999999999999999999999999998888889999999
Q ss_pred ecccccccccchhhhcCCCC-CCCHHHHHHHHHHcCCchHHhcCCCCcCC
Q 000680 1296 IPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS 1344 (1354)
Q Consensus 1296 VpQdp~LF~GTIR~NLdp~~-~~sDeeI~~AL~~a~l~~~I~~Lp~gldt 1344 (1354)
+||+|.+|.+|+++|+.... .++.+++.++++..++.++++.+|.|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 130 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDT 130 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcce
Confidence 99999999999999997432 34667788889999999999999887764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-20 Score=195.64 Aligned_cols=136 Identities=31% Similarity=0.473 Sum_probs=114.8
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCC---hHHHhc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDLRV 1291 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~---l~~LR~ 1291 (1354)
.|+++||+.+|+. ...+|+||||+|++||.|||+|+||||||||+++|.|+.+|++|+|.++|.+|.++. ++++|+
T Consensus 3 ~i~~~nl~k~yp~-~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPG-GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCC-CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 5899999999964 456999999999999999999999999999999999999999999999999999998 788899
Q ss_pred cCceeccccccccc-chhhhcC------------CCCCCCH---HHHHHHHHHcCCchHHhcCCCCcCCCCcccccc
Q 000680 1292 KLSIIPQEPTLFRG-SVRTNLD------------PLGLYSD---DEIWKALEKCQLKTTISSLPNKLDSSGKLFSAA 1352 (1354)
Q Consensus 1292 ~isiVpQdp~LF~G-TIR~NLd------------p~~~~sD---eeI~~AL~~a~l~~~I~~Lp~gldt~G~n~s~~ 1352 (1354)
++|+|+|.|-|-.. |+-+|+- -|+.++. .+..+||+++++.|+.-. ..+--++|+.=+++
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-ra~~LSGGQQQRVa 157 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-RASTLSGGQQQRVA 157 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-HhccCCcchhHHHH
Confidence 99999999999876 8999972 1334443 357889999999987754 33445566655443
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-20 Score=195.67 Aligned_cols=153 Identities=22% Similarity=0.209 Sum_probs=105.4
Q ss_pred eeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCeE--EEEeCCCCCCCCcHHHHHhcCCCCCHHHHHHH
Q 000680 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI--AYVSQTSWIQSGSIRDNILYGKPMDKARYDKA 692 (1354)
Q Consensus 615 ~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~i--~yv~Q~~~~~~~ti~eni~~g~~~~~~~~~~~ 692 (1354)
+..+...++.+.+|+||||||||++|.+|.=.+--.+-........ .+-...++-..++|+ +.|
T Consensus 14 ~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~f------------ 79 (178)
T cd03239 14 DETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVE--ITF------------ 79 (178)
T ss_pred CCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEE--EEE------------
Confidence 3344443444999999999999999999853221110000000000 011111111111111 112
Q ss_pred HHHhccHHHHhcCCCCCcccccCCCCCCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcC
Q 000680 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY----NDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768 (1354)
Q Consensus 693 ~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQkqRv~lARal~----~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~ 768 (1354)
...+..+|.||.|+| ||||||||++|||++. .+|+++++|||+++||++..+.+.+.+.....+
T Consensus 80 ------~~~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~ 147 (178)
T cd03239 80 ------DKSYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH 147 (178)
T ss_pred ------ECceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 122678899999987 9999999999999985 799999999999999999999988765554445
Q ss_pred CcEEEEEcCCcchhhhcCEEEEEeC
Q 000680 769 KKTVILVTHQVEFLSEVDRILVLEG 793 (1354)
Q Consensus 769 ~~tvilvtH~~~~l~~~d~i~~l~~ 793 (1354)
|+|+|++||+.+.+..+|+++.+++
T Consensus 148 g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 148 TSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCEEEEEECCHHHHhhCCeEEEEEE
Confidence 7899999999998888999999865
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-19 Score=182.20 Aligned_cols=200 Identities=23% Similarity=0.364 Sum_probs=156.5
Q ss_pred CCCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcCe-----------
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659 (1354)
Q Consensus 591 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g~----------- 659 (1354)
++.+|++.+..|+|+.. .|++-|+|++++.|....+||.|||||||||+++.|-.-...|.|.+.|+
T Consensus 10 ~~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~S 87 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESS 87 (291)
T ss_pred ccceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccccc
Confidence 46789999999999864 48999999999999999999999999999999999987777788888662
Q ss_pred --EEEEeCC----------CCCC-CCcHHHHHhcCCC-CCHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCChHHH
Q 000680 660 --IAYVSQT----------SWIQ-SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1354)
Q Consensus 660 --i~yv~Q~----------~~~~-~~ti~eni~~g~~-~~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSgGQk 725 (1354)
..|..-+ --+| +.++ +...||-. .+.+|-++.++...+ |+ .-+...+|-|||
T Consensus 88 gdl~YLGgeW~~~~~~agevplq~D~sa-e~mifgV~g~dp~Rre~LI~iLDI--dl-----------~WRmHkvSDGqr 153 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAGEVPLQGDISA-EHMIFGVGGDDPERREKLIDILDI--DL-----------RWRMHKVSDGQR 153 (291)
T ss_pred CceeEecccccccccccccccccccccH-HHHHhhccCCChhHhhhhhhheec--cc-----------eEEEeeccccch
Confidence 3443321 1122 2233 44455543 345666665543221 22 245678999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHh-cCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecChH
Q 000680 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1354)
Q Consensus 726 qRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 803 (1354)
+||.|+..|++.=+++||||.|-.||.-.+..+.+.+.... .+|.|+|.+||-.+-++. ..+++.|++|+++..-+|+
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 99999999999999999999999999999999887665443 478999999999988876 8999999999999866666
Q ss_pred HHH
Q 000680 804 ELL 806 (1354)
Q Consensus 804 ~l~ 806 (1354)
++.
T Consensus 234 ~i~ 236 (291)
T KOG2355|consen 234 KIK 236 (291)
T ss_pred hhh
Confidence 554
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=204.35 Aligned_cols=129 Identities=36% Similarity=0.638 Sum_probs=115.1
Q ss_pred EEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCc
Q 000680 1216 IELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1354)
|+++|++++|... ..++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999642 235999999999999999999999999999999999999999999999999999888888889999
Q ss_pred eecccccccccchhhhcCCC-CCCCHHHHHHHHHHcCCchHHhcCCCCcCC
Q 000680 1295 IIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDS 1344 (1354)
Q Consensus 1295 iVpQdp~LF~GTIR~NLdp~-~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt 1344 (1354)
++||+|.+|++|+++|+... ...+++++.++++..++.+++..+|.|+++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDT 131 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccce
Confidence 99999999999999999632 234567788889999999999999988765
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-19 Score=201.01 Aligned_cols=135 Identities=18% Similarity=0.285 Sum_probs=115.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCCh----HHHhc
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL----KDLRV 1291 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l----~~LR~ 1291 (1354)
+.+.|..++|.++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ...|+
T Consensus 1 ~~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 1 VQVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred CeeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 3578999999765 459999999999999999999999999999999999999999999999999887653 34678
Q ss_pred cCceecccccccccchhhhcCCCCCCCHHHHHHHHHHcCCchHHhcCCCCcCC----CCccccc
Q 000680 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSA 1351 (1354)
Q Consensus 1292 ~isiVpQdp~LF~GTIR~NLdp~~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~ 1351 (1354)
.++++||+|.+|+.|+++|+.....+++++.+++++.+++.+.+..+|.|+++ ...++|-
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~ 143 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSG 143 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCH
Confidence 89999999999999999999754445677788999999999999888888755 3445554
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-20 Score=202.79 Aligned_cols=127 Identities=25% Similarity=0.431 Sum_probs=108.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChH---HHhcc
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRVK 1292 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~---~LR~~ 1292 (1354)
|+++|++++|+.+..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964434599999999999999999999999999999999999999999999999999877643 47889
Q ss_pred Cceeccccccccc-chhhhcCCC----CC---CCHHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1293 LSIIPQEPTLFRG-SVRTNLDPL----GL---YSDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1293 isiVpQdp~LF~G-TIR~NLdp~----~~---~sDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
++++||+|.+|.. |+++|+... +. ..++++.++++..++.++....|..|
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 139 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQL 139 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 9999999999874 999999521 11 13467889999999988877766543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-19 Score=205.58 Aligned_cols=127 Identities=26% Similarity=0.432 Sum_probs=114.0
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1354)
.|+++||+.+|.+.. ||+|||++|+.||.+++||||||||||++++|.|+.+|++|+|.|||.|+++++.++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 699999999996433 999999999999999999999999999999999999999999999999999999987 8999
Q ss_pred eeccccccccc-chhhhcC-CCCC------CCHHHHHHHHHHcCCchHHhcCCCCcCCC
Q 000680 1295 IIPQEPTLFRG-SVRTNLD-PLGL------YSDDEIWKALEKCQLKTTISSLPNKLDSS 1345 (1354)
Q Consensus 1295 iVpQdp~LF~G-TIR~NLd-p~~~------~sDeeI~~AL~~a~l~~~I~~Lp~gldt~ 1345 (1354)
+|+|+..||.- ||++||. |... --++++.++++..++.+.....|..|..+
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGG 137 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGG 137 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChh
Confidence 99999999976 9999995 2211 12667889999999999999999887654
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=201.61 Aligned_cols=205 Identities=21% Similarity=0.344 Sum_probs=165.0
Q ss_pred CCcEEEEeeEEEeCCCCCCCcceeeeEEeeCCeEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEcC-------------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 592 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStLl~~i~g~~~~~~G~i~~~g------------- 658 (1354)
+..++++|.+..= +.+.+.++||||+|.+||+++|.|-.|-|-+-|+.+|.|+.++.+|+|.++|
T Consensus 255 ~~vL~V~~L~v~~--~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 255 EVVLEVEDLSVKD--RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CeEEEEeeeEeec--CCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 4457777777543 3335689999999999999999999999999999999999999999999987
Q ss_pred --eEEEEeCCC----CCCCCcHHHHHhcCCCC----------CHHHHHHHHHHhccHHHHhcCCCCCcccccCCCCCCCh
Q 000680 659 --SIAYVSQTS----WIQSGSIRDNILYGKPM----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1354)
Q Consensus 659 --~i~yv~Q~~----~~~~~ti~eni~~g~~~----------~~~~~~~~~~~~~l~~~l~~l~~gd~t~ig~~g~~LSg 722 (1354)
.+||||.+. .....|+.||+.++.-. +...+++..+ .+-+.++--+.+.. .+..+|||
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~--~li~~fdVr~~~~~----~~a~~LSG 406 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR--ELIEEFDVRAPSPD----APARSLSG 406 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH--HHHHHcCccCCCCC----cchhhcCC
Confidence 379999985 46788999999876432 2222222211 22222222233322 45678999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcCHHHHHHHHHHHHHHhcCCcEEEEEcCCcchhhh-cCEEEEEeCCeEEEecC
Q 000680 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1354)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~g~ 801 (1354)
|++||+-+||-+..+||+++...||-|||....+.|.+.++....+|+.|++++-+++++-. ||||.||.+|+|+...+
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccc
Confidence 99999999999999999999999999999999999999998888899999999999998755 99999999999997766
Q ss_pred hHH
Q 000680 802 YQE 804 (1354)
Q Consensus 802 ~~~ 804 (1354)
+++
T Consensus 487 ~~~ 489 (501)
T COG3845 487 PEE 489 (501)
T ss_pred ccc
Confidence 554
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-19 Score=190.66 Aligned_cols=127 Identities=29% Similarity=0.513 Sum_probs=108.7
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChH---HHh
Q 000680 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLR 1290 (1354)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~---~LR 1290 (1354)
-.|++++|+++|.. ..||+||||+|++||..||+|+||||||||++++.|+..|++|+|.|||.||.+++-+ .+|
T Consensus 7 ~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 36999999999953 3599999999999999999999999999999999999999999999999999999864 569
Q ss_pred ccCceeccccccccc-chhhhcC-CCCCC---CHHHHH----HHHHHcCCchH-HhcCCCCc
Q 000680 1291 VKLSIIPQEPTLFRG-SVRTNLD-PLGLY---SDDEIW----KALEKCQLKTT-ISSLPNKL 1342 (1354)
Q Consensus 1291 ~~isiVpQdp~LF~G-TIR~NLd-p~~~~---sDeeI~----~AL~~a~l~~~-I~~Lp~gl 1342 (1354)
+++|+++|..-||+. ||+||+. |..+| +++++. .-|+.+||..- -..+|.-|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsEL 146 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSEL 146 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhh
Confidence 999999999999988 9999995 55444 455544 46888999887 44556543
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-19 Score=206.53 Aligned_cols=128 Identities=23% Similarity=0.413 Sum_probs=110.1
Q ss_pred eEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccC
Q 000680 1215 RIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1354)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999642 24599999999999999999999999999999999999999999999999999998888999999
Q ss_pred ceeccccc--ccccchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1294 SIIPQEPT--LFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1294 siVpQdp~--LF~GTIR~NLdp~~---~~s----DeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
+++||+|. ++..|+++||.... ..+ ++.+.++++.+++.++....|..|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARL 141 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 99999983 56779999996211 123 356889999999998887776543
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-19 Score=203.28 Aligned_cols=121 Identities=20% Similarity=0.325 Sum_probs=105.2
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccC---CCCCEEEEcCeeCCCCChHHHhc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE---PAGGSILIDGVDICSMGLKDLRV 1291 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e---~~~G~I~IDGvDI~~i~l~~LR~ 1291 (1354)
.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.|+.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999953 359999999999999999999999999999999999985 69999999999999998888999
Q ss_pred cCceecccccccccchhhhcCCCC---C------CCHHHHHHHHHHcCCchHHhc
Q 000680 1292 KLSIIPQEPTLFRGSVRTNLDPLG---L------YSDDEIWKALEKCQLKTTISS 1337 (1354)
Q Consensus 1292 ~isiVpQdp~LF~GTIR~NLdp~~---~------~sDeeI~~AL~~a~l~~~I~~ 1337 (1354)
+++++||+|.+|..|+++|+.... . ..++++.++++.+++.+++..
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 134 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD 134 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH
Confidence 999999999999999999995321 1 123467889999999766543
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-19 Score=206.56 Aligned_cols=127 Identities=24% Similarity=0.411 Sum_probs=110.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1354)
-|+++||+++|+.+ .++|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999633 35999999999999999999999999999999999999999999999999999988889999999
Q ss_pred eecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1295 IIPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1295 iVpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
++||+| .+|..|+++|+.... ..+ ++++.++++.+++.++..+.|..|
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 139 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHL 139 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhC
Confidence 999999 688899999996211 122 356789999999998887777643
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-19 Score=196.24 Aligned_cols=121 Identities=33% Similarity=0.540 Sum_probs=105.3
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1354)
.++.+|++|+|. ..++|+||||+|++||.++|+||+|||||||+++|.|+..|.+|+|++||.||.+++..++-++++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 478999999996 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccc-cccchhhhcC----CC----CCCC--HH-HHHHHHHHcCCchHHhc
Q 000680 1295 IIPQEPTL-FRGSVRTNLD----PL----GLYS--DD-EIWKALEKCQLKTTISS 1337 (1354)
Q Consensus 1295 iVpQdp~L-F~GTIR~NLd----p~----~~~s--De-eI~~AL~~a~l~~~I~~ 1337 (1354)
+|||++.. |.-|++|=+- |+ ...+ |+ .+.+||+.+++.++..+
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r 134 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR 134 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC
Confidence 99999754 4558988762 32 2223 33 47789999999998765
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-19 Score=195.39 Aligned_cols=136 Identities=32% Similarity=0.475 Sum_probs=116.6
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCC-CCChHHHhccC
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC-SMGLKDLRVKL 1293 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~-~i~l~~LR~~i 1293 (1354)
.|+++|++|+|.++ .++|+|+||+|++||.++|+|+||||||||+++|.|++.|++|.|.+||.|++ +.+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58999999999877 67999999999999999999999999999999999999999999999999999 58999999999
Q ss_pred ceecccc--cccccchhhhcCCC--C-CCCHHH----HHHHHHHcCCchHHhcCCCCcCCCCcccccc
Q 000680 1294 SIIPQEP--TLFRGSVRTNLDPL--G-LYSDDE----IWKALEKCQLKTTISSLPNKLDSSGKLFSAA 1352 (1354)
Q Consensus 1294 siVpQdp--~LF~GTIR~NLdp~--~-~~sDee----I~~AL~~a~l~~~I~~Lp~gldt~G~n~s~~ 1352 (1354)
|+|.|+| .+|..||.+.+... + ..+.+| +.+||+.+++.++-..-|.. -++|+.=+++
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~-LSGGqkqRva 148 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFN-LSGGQKQRVA 148 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccc-cCCcceeeHH
Confidence 9999999 79999999999621 1 234444 77899999999986655554 4555544443
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-19 Score=201.32 Aligned_cols=122 Identities=33% Similarity=0.541 Sum_probs=105.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhccc-----CCCCCEEEEcCeeCCCCC--hHH
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV-----EPAGGSILIDGVDICSMG--LKD 1288 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~-----e~~~G~I~IDGvDI~~i~--l~~ 1288 (1354)
|+++||+++|+. . ++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++.+++ ...
T Consensus 1 i~~~~l~~~~~~-~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD-K-HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC-c-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 579999999964 2 5999999999999999999999999999999999999 999999999999998887 677
Q ss_pred HhccCceecccccccccchhhhcCCC----CCC----CHHHHHHHHHHcCCchHHhcCC
Q 000680 1289 LRVKLSIIPQEPTLFRGSVRTNLDPL----GLY----SDDEIWKALEKCQLKTTISSLP 1339 (1354)
Q Consensus 1289 LR~~isiVpQdp~LF~GTIR~NLdp~----~~~----sDeeI~~AL~~a~l~~~I~~Lp 1339 (1354)
+|++++++||+|.+|..|+++|+... +.. .++++.++++..++.+.....+
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 137 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRL 137 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccC
Confidence 89999999999999988999999531 111 2356788999999988776654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-19 Score=204.96 Aligned_cols=128 Identities=25% Similarity=0.413 Sum_probs=111.0
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1354)
.++++||+++|+...+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+...+|++|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999643446999999999999999999999999999999999999999999999999999988888999999
Q ss_pred eecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1295 IIPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1295 iVpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
++||+| .+++.|+++||.... ..+ ++++.++++.+++.+++...|..|
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRL 141 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccC
Confidence 999998 466789999995311 123 345788999999999988877654
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-19 Score=200.66 Aligned_cols=124 Identities=33% Similarity=0.500 Sum_probs=107.4
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1354)
.++++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+..++...+|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 5899999999953 35999999999999999999999999999999999999999999999999999888888999999
Q ss_pred eecccccccccchhhhcCCC---CCCCHHHHHHHHHHcCCc-hHHhcCCC
Q 000680 1295 IIPQEPTLFRGSVRTNLDPL---GLYSDDEIWKALEKCQLK-TTISSLPN 1340 (1354)
Q Consensus 1295 iVpQdp~LF~GTIR~NLdp~---~~~sDeeI~~AL~~a~l~-~~I~~Lp~ 1340 (1354)
++||+|.+|.+|+++|+... ....++++.++++..++. +.....|.
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 130 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVK 130 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcc
Confidence 99999999999999999632 112356788899999996 44444333
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-19 Score=208.12 Aligned_cols=127 Identities=26% Similarity=0.434 Sum_probs=108.3
Q ss_pred EEEEEEEEEeCCC--CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHH---Hh
Q 000680 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LR 1290 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~--~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~---LR 1290 (1354)
|+++||+++|+.+ ..++|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.||.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7999999999632 236999999999999999999999999999999999999999999999999999987654 58
Q ss_pred ccCceecccccccc-cchhhhcC-CC--CCCC----HHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1291 VKLSIIPQEPTLFR-GSVRTNLD-PL--GLYS----DDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1291 ~~isiVpQdp~LF~-GTIR~NLd-p~--~~~s----DeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
++|++|||++.+|. .|+++|+. |. ...+ ++++.++|+.+++.+.....|..|
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~L 141 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNL 141 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 89999999999995 69999995 22 1122 345788999999998877777654
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.1e-16 Score=174.63 Aligned_cols=269 Identities=20% Similarity=0.213 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000680 280 IFIAICALLRTIAVVVGPLLLYAFVNYSNRGEEN-LQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVY 358 (1354)
Q Consensus 280 ~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~-~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rir~~l~~~iy 358 (1354)
++..++.++..+...+.|+++..+++...++..+ ....+.++..+++..++...+...+.+...+.+.+++..+...+|
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888999999999986554333 344555555555555566666666666688999999999999999
Q ss_pred HHHhcCCcccCCCCCHHHHHHHHHhHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHH
Q 000680 359 QKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSL-ALQLFLAIGVLFGVVGL-GALPGLVLFLICGLLNVP 436 (1354)
Q Consensus 359 ~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~~~~~w~~-plqi~~~~~~L~~~lG~-~~l~gl~v~~i~~~l~~~ 436 (1354)
+|.++.+....+++++|+++|.++.|++++.+........+.. .+.++.++++++ .++| .+++.++++.+..++...
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~l~~l~~~~~~~~~~~~ 160 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLF-FISWKLALILLIILPLLFLISFI 160 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhccc-ccccccccccchhhhhhHhhhhh
Confidence 9999998876667889999999999999999977654444433 344444444443 3343 333444455555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000680 437 FAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTV-IYWMSPTIIS 515 (1354)
Q Consensus 437 ~~~~~~~~q~~~~~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~-~~~~~p~~v~ 515 (1354)
+.+..++..++..+..+++.+.++|.++|+|+||.|++|+.+.++.++.+++..+..++.......... ..........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (275)
T PF00664_consen 161 FSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIV 240 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999988887765554444333333222 2222222222
Q ss_pred HHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHH
Q 000680 516 SVIFLGCAL-TGSAPLNASTIFTVLATLRSMGEPV 549 (1354)
Q Consensus 516 ~~~f~~~~l-~~~~~Lt~~~~Ft~l~lf~~l~~pl 549 (1354)
.+.+.+..+ ..++.++++.+++.+.+++.+..|+
T Consensus 241 ~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 241 LILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 333333344 4558999999999999999999886
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-19 Score=197.89 Aligned_cols=127 Identities=28% Similarity=0.448 Sum_probs=105.8
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHH----H
Q 000680 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD----L 1289 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~----L 1289 (1354)
|+++||+++|.++. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+.+. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996431 35999999999999999999999999999999999999999999999999999887443 4
Q ss_pred hccCceeccccccccc-chhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1290 RVKLSIIPQEPTLFRG-SVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1290 R~~isiVpQdp~LF~G-TIR~NLdp~---~~~----sDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
|++++++||+|.+|.+ |+++|+... ... .++++.++++..++.+.....|..|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 141 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSEL 141 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhc
Confidence 6789999999999987 999998521 111 2456888999999987776655433
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-19 Score=195.57 Aligned_cols=122 Identities=25% Similarity=0.384 Sum_probs=104.4
Q ss_pred EEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCcee
Q 000680 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296 (1354)
Q Consensus 1217 ~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiV 1296 (1354)
+++|++++|..+ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ...|++++++
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 478999999642 359999999999999999999999999999999999999999999999999865 4678899999
Q ss_pred cccc--cccccchhhhcCCCC---CCCHHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1297 PQEP--TLFRGSVRTNLDPLG---LYSDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1297 pQdp--~LF~GTIR~NLdp~~---~~sDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
||+| .+|..|+++|+.... ...++++.++++..++.++....|..|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 127 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSL 127 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhC
Confidence 9998 467899999996321 123467899999999998887777654
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-19 Score=201.89 Aligned_cols=128 Identities=27% Similarity=0.442 Sum_probs=108.8
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1354)
.|+++|++++|.++..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 59999999999644446999999999999999999999999999999999999999999999999999888888999999
Q ss_pred eecccc--cccccchhhhcCCC---CCCCHH----HHHHHHHHcCCchHHhcCCCCc
Q 000680 1295 IIPQEP--TLFRGSVRTNLDPL---GLYSDD----EIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1295 iVpQdp--~LF~GTIR~NLdp~---~~~sDe----eI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
++||+| .++..|+++|+... ...+++ .+.++++..++.++....|..|
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 143 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNL 143 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccC
Confidence 999998 45577999999531 112333 3667889999988877766543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-19 Score=204.73 Aligned_cols=133 Identities=25% Similarity=0.392 Sum_probs=114.6
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccC
Q 000680 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1354)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1354)
..|+++||+.+|. ...+++||||+|++||.+.++|||||||||++++|.||..|++|+|.|||.||..++.+ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 4699999999997 34599999999999999999999999999999999999999999999999999999888 5999
Q ss_pred ceeccccccccc-chhhhcCC-CC---CCCHH----HHHHHHHHcCCchHHhcCCCCcCCCCccccc
Q 000680 1294 SIIPQEPTLFRG-SVRTNLDP-LG---LYSDD----EIWKALEKCQLKTTISSLPNKLDSSGKLFSA 1351 (1354)
Q Consensus 1294 siVpQdp~LF~G-TIR~NLdp-~~---~~sDe----eI~~AL~~a~l~~~I~~Lp~gldt~G~n~s~ 1351 (1354)
++|+||.-||.- ||++|+.. .. ...++ .+.++|+.+++.++-...|..+. +|++=++
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLS-GGQqQRV 145 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLS-GGQQQRV 145 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhC-hHHHHHH
Confidence 999999999965 99999852 11 12333 67899999999999999988764 4444443
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-19 Score=199.36 Aligned_cols=127 Identities=25% Similarity=0.401 Sum_probs=106.7
Q ss_pred eEEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHH---H
Q 000680 1215 RIELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---L 1289 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~---L 1289 (1354)
-++++||+++|..+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.+. +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 35999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-ccCceeccccccccc-chhhhcCC---CCCC----CHHHHHHHHHHcCCchHHhcCCCC
Q 000680 1290 R-VKLSIIPQEPTLFRG-SVRTNLDP---LGLY----SDDEIWKALEKCQLKTTISSLPNK 1341 (1354)
Q Consensus 1290 R-~~isiVpQdp~LF~G-TIR~NLdp---~~~~----sDeeI~~AL~~a~l~~~I~~Lp~g 1341 (1354)
| ++++++||+|.+|.+ |+++|+.. +... .++++.++++..++.+.....|..
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 145 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSE 145 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhh
Confidence 3 689999999999976 99999852 1111 234678999999998776665543
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-16 Score=184.16 Aligned_cols=255 Identities=19% Similarity=0.188 Sum_probs=164.3
Q ss_pred HHhcchHHHHhcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHh--cCCccChhHH
Q 000680 1079 ETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-L--VLI--PRGYVAPGLV 1153 (1354)
Q Consensus 1079 Etl~Gl~tIRaf~~e~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~l~~~~~~~~~~~-~--vl~--~~g~ls~g~~ 1153 (1354)
+...+...|--|+.+......-++..++.............|+.+..++...+..++..+. + +.. ..+.+++..+
T Consensus 270 rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL 349 (659)
T KOG0060|consen 270 RLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAEL 349 (659)
T ss_pred eeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHH
Confidence 3445566677777655554444444444444444445556677766555443221111000 0 000 2356676655
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCC-----------------CCCCCCC-CCCCCCCCC
Q 000680 1154 GLSLSYA----FTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPP-----------------EPPAIVE-DKRPPSSWP 1211 (1354)
Q Consensus 1154 gl~l~ya----~~l~~~l~~l~~~~~~le~~~~sveRI~e~~~~~~-----------------E~~~~~~-~~~~~~~wp 1211 (1354)
---+++. ..+.+.+..++....++..-..-..||.|+.+.-. |..+..+ ....+..||
T Consensus 350 ~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~ 429 (659)
T KOG0060|consen 350 SGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEP 429 (659)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCccccc
Confidence 4433332 22333333444444444444556678888764210 1111100 111245678
Q ss_pred CcceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEc--CeeCCCCChHHH
Q 000680 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILID--GVDICSMGLKDL 1289 (1354)
Q Consensus 1212 ~~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~ID--GvDI~~i~l~~L 1289 (1354)
....|+|++|++.=+.+.+...+|+||+|+.|+.+-|+|+||||||||+..|.++++..+|+|.-- |-+
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~--------- 500 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP--------- 500 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC---------
Confidence 888999999999986656656677999999999999999999999999999999999999999753 322
Q ss_pred hccCceecccccccccchhhhcC-CC-------CCCCHHHHHHHHHHcCCchHHhcCCCCcCC
Q 000680 1290 RVKLSIIPQEPTLFRGSVRTNLD-PL-------GLYSDDEIWKALEKCQLKTTISSLPNKLDS 1344 (1354)
Q Consensus 1290 R~~isiVpQdp~LF~GTIR~NLd-p~-------~~~sDeeI~~AL~~a~l~~~I~~Lp~gldt 1344 (1354)
+.+=++||-|+.=.||+|+-+- |. +..+|++|.+.|+.+++.+.+. ..+|+|.
T Consensus 501 -~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~-r~ggld~ 561 (659)
T KOG0060|consen 501 -KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLE-REGGLDQ 561 (659)
T ss_pred -CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHH-HhCCCCc
Confidence 4588999999999999999983 42 1368999999999999987654 4688884
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-19 Score=195.98 Aligned_cols=126 Identities=24% Similarity=0.389 Sum_probs=107.2
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChH---HHhcc
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRVK 1292 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~---~LR~~ 1292 (1354)
++++|++++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.. .+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 3599999999999999999999999999999999999999999999999999987643 47889
Q ss_pred Cceecccccccc-cchhhhcCCC----C---CCCHHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1293 LSIIPQEPTLFR-GSVRTNLDPL----G---LYSDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1293 isiVpQdp~LF~-GTIR~NLdp~----~---~~sDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
++++||+|.+|. .|+++|+... + ...+++++++++..++.+.....|..|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 138 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQL 138 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 999999999996 5999998521 1 112467889999999988776666543
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-19 Score=206.11 Aligned_cols=124 Identities=22% Similarity=0.323 Sum_probs=101.7
Q ss_pred ceEEEEEEEEEeCCC---CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCC------
Q 000680 1214 GRIELRQLKIRYRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM------ 1284 (1354)
Q Consensus 1214 G~I~f~nVsf~Y~~~---~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i------ 1284 (1354)
..|+++|++++|+.. ..++|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||+|+.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 369999999999642 23599999999999999999999999999999999999999999999999999763
Q ss_pred ----------ChHHHhccCceecccc--cccccchhhhcCCC--C-CCCHH----HHHHHHHHcCCc-hHHhc
Q 000680 1285 ----------GLKDLRVKLSIIPQEP--TLFRGSVRTNLDPL--G-LYSDD----EIWKALEKCQLK-TTISS 1337 (1354)
Q Consensus 1285 ----------~l~~LR~~isiVpQdp--~LF~GTIR~NLdp~--~-~~sDe----eI~~AL~~a~l~-~~I~~ 1337 (1354)
....+|+++++|||+| .+|++|+++|+... . ..+++ .+.++++..++. ++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 4567899999999998 69999999999521 1 12333 345677777775 34433
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-19 Score=196.74 Aligned_cols=123 Identities=24% Similarity=0.364 Sum_probs=103.0
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
|+++||+++|..+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.. ..+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5799999999643245999999999999999999999999999999999999999999999999998753 677889999
Q ss_pred eccccccc-ccchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcCC
Q 000680 1296 IPQEPTLF-RGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLP 1339 (1354)
Q Consensus 1296 VpQdp~LF-~GTIR~NLdp~~---~~s----DeeI~~AL~~a~l~~~I~~Lp 1339 (1354)
+||+|.+| ..|+++|+.... ..+ ++++.++++..++.+.....+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 131 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA 131 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh
Confidence 99999999 579999984211 112 346788999999877655444
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-19 Score=196.72 Aligned_cols=126 Identities=28% Similarity=0.394 Sum_probs=106.4
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCCh---HHHhcc
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l---~~LR~~ 1292 (1354)
++++|++++|+.+ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+...+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 359999999999999999999999999999999999999999999999999988764 357889
Q ss_pred Cceeccccccccc-chhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1293 LSIIPQEPTLFRG-SVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1293 isiVpQdp~LF~G-TIR~NLdp~---~~~----sDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
+++|||+|.+|.+ |+++|+... ... .++++.++++..++.+.....|..+
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 137 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAEL 137 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhc
Confidence 9999999999985 999999521 111 2356788999999988776666544
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-19 Score=198.69 Aligned_cols=124 Identities=31% Similarity=0.488 Sum_probs=105.4
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCCh---HHHhcc
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l---~~LR~~ 1292 (1354)
|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999953 359999999999999999999999999999999999999999999999999988764 567899
Q ss_pred Cceeccccccccc-chhhhcCC----CCCCC----HHHHHHHHHHcCCchHHhcCCCC
Q 000680 1293 LSIIPQEPTLFRG-SVRTNLDP----LGLYS----DDEIWKALEKCQLKTTISSLPNK 1341 (1354)
Q Consensus 1293 isiVpQdp~LF~G-TIR~NLdp----~~~~s----DeeI~~AL~~a~l~~~I~~Lp~g 1341 (1354)
+++|||+|.+|.+ |+++|+.- ....+ ++++.++++..++.++....|..
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAE 136 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhh
Confidence 9999999999987 99999952 11123 34577889999998877665543
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-19 Score=203.81 Aligned_cols=118 Identities=32% Similarity=0.534 Sum_probs=101.2
Q ss_pred eEEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCC--hHHH
Q 000680 1215 RIELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG--LKDL 1289 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~---~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~--l~~L 1289 (1354)
.|+++||+++|++.. .++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+++.+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 389999999996432 35999999999999999999999999999999999999999999999999998754 4678
Q ss_pred hccCceecccc--cccccchhhhcCCCC---CCCH----HHHHHHHHHcCCc
Q 000680 1290 RVKLSIIPQEP--TLFRGSVRTNLDPLG---LYSD----DEIWKALEKCQLK 1332 (1354)
Q Consensus 1290 R~~isiVpQdp--~LF~GTIR~NLdp~~---~~sD----eeI~~AL~~a~l~ 1332 (1354)
|+++++|||+| .+|..|+++|+.... ..++ +++.++++.+++.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 133 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD 133 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999998 578999999995211 1233 3578899999996
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-19 Score=195.63 Aligned_cols=124 Identities=23% Similarity=0.380 Sum_probs=104.7
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccC
Q 000680 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1354)
|+++||+++|.... +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999996431 159999999999999999999999999999999999999999999999999986 456788999
Q ss_pred ceeccccccccc-chhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcCCC
Q 000680 1294 SIIPQEPTLFRG-SVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPN 1340 (1354)
Q Consensus 1294 siVpQdp~LF~G-TIR~NLdp~---~~~----sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1354)
+++||+|.+|.+ |+++|+... ... .++++.++++..++.+.....+.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 135 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVG 135 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhh
Confidence 999999999986 999998411 111 24567889999999877665443
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.9e-19 Score=195.81 Aligned_cols=117 Identities=26% Similarity=0.381 Sum_probs=103.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1354)
.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+++...+|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999953 35999999999999999999999999999999999999999999999999999998888999999
Q ss_pred eecccccccccchhhhcCC----CCC-CCHHHHHHHHHHcCCch
Q 000680 1295 IIPQEPTLFRGSVRTNLDP----LGL-YSDDEIWKALEKCQLKT 1333 (1354)
Q Consensus 1295 iVpQdp~LF~GTIR~NLdp----~~~-~sDeeI~~AL~~a~l~~ 1333 (1354)
++||+|.+|+.|+++|+.. .+. ..++++.++++..++.+
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~ 128 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD 128 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh
Confidence 9999999999999999952 111 13456778999999864
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.5e-19 Score=194.80 Aligned_cols=125 Identities=32% Similarity=0.474 Sum_probs=105.7
Q ss_pred EEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCcee
Q 000680 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296 (1354)
Q Consensus 1217 ~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiV 1296 (1354)
+++|++++|..+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++++
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 47899999964324599999999999999999999999999999999999999999999999999988888899999999
Q ss_pred cccc--cccccchhhhcCCC---CCCC----HHHHHHHHHHcCCchHHhcCCCC
Q 000680 1297 PQEP--TLFRGSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNK 1341 (1354)
Q Consensus 1297 pQdp--~LF~GTIR~NLdp~---~~~s----DeeI~~AL~~a~l~~~I~~Lp~g 1341 (1354)
||+| .++..|+++|+... ...+ ++++.++++..++.+.....|..
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 134 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFT 134 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCccc
Confidence 9998 36788999999531 1122 34577889999998877665543
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9e-19 Score=189.06 Aligned_cols=135 Identities=30% Similarity=0.439 Sum_probs=109.7
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHH---H-
Q 000680 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---L- 1289 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~---L- 1289 (1354)
++++||+..|..+. -.+|+||||+|++||.|||+||||||||||+++|-++-.|++|.|.++|.|+..++-+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996442 35999999999999999999999999999999999999999999999999999998543 3
Q ss_pred hccCceeccccccccc-chhhhcC-C--CCCC----CHHHHHHHHHHcCCchHHh-cCCCCcCCCCccccc
Q 000680 1290 RVKLSIIPQEPTLFRG-SVRTNLD-P--LGLY----SDDEIWKALEKCQLKTTIS-SLPNKLDSSGKLFSA 1351 (1354)
Q Consensus 1290 R~~isiVpQdp~LF~G-TIR~NLd-p--~~~~----sDeeI~~AL~~a~l~~~I~-~Lp~gldt~G~n~s~ 1351 (1354)
|++||+|+|+..|++. |++||+. | +... .++.+.+.++..++.+... ..|..| ++|++=++
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eL-SGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSEL-SGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhc-CHHHHHHH
Confidence 5789999999999977 9999985 2 2211 2456677888889987777 556543 45554443
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.9e-19 Score=198.98 Aligned_cols=121 Identities=31% Similarity=0.440 Sum_probs=103.4
Q ss_pred cceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccC-----CCCCEEEEcCeeCCC--CC
Q 000680 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MG 1285 (1354)
Q Consensus 1213 ~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e-----~~~G~I~IDGvDI~~--i~ 1285 (1354)
.+.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 578999999999963 359999999999999999999999999999999999986 589999999999964 45
Q ss_pred hHHHhccCceecccccccccchhhhcCCC----CCCC----HHHHHHHHHHcCCchHH
Q 000680 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTI 1335 (1354)
Q Consensus 1286 l~~LR~~isiVpQdp~LF~GTIR~NLdp~----~~~s----DeeI~~AL~~a~l~~~I 1335 (1354)
...+|++++++||+|.+|..|+++|+... ...+ +++++++++.+++.+.+
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 146 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV 146 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Confidence 67889999999999999999999999621 1122 35688899999986443
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.6e-19 Score=200.72 Aligned_cols=126 Identities=25% Similarity=0.421 Sum_probs=109.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
++++||+++|..+. ++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 4 l~~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCCC-ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 78999999995433 49999999999999999999999999999999999999999999999999998888889999999
Q ss_pred ecccc--cccccchhhhcCCCC---CCC----HHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1296 IPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1296 VpQdp--~LF~GTIR~NLdp~~---~~s----DeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
+||+| .+|..|+++|+.... ..+ ++.+.++++.+++.+.....|..|
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 138 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHL 138 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 99998 478889999995211 123 345789999999998887777544
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-18 Score=200.26 Aligned_cols=129 Identities=22% Similarity=0.382 Sum_probs=110.6
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCC---CEEEEcCeeCCCCChHHHh
Q 000680 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG---GSILIDGVDICSMGLKDLR 1290 (1354)
Q Consensus 1214 G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~---G~I~IDGvDI~~i~l~~LR 1290 (1354)
+.|+++|++++|++...++|+||||+|++||.+||+|++|||||||+++|.|+++|++ |+|.+||.++.+.+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999996433359999999999999999999999999999999999999988 8999999999988888899
Q ss_pred ccCceecccc--cccccchhhhcCCC---CCCCH----HHHHHHHHHcCCchHHhcCCCCc
Q 000680 1291 VKLSIIPQEP--TLFRGSVRTNLDPL---GLYSD----DEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1291 ~~isiVpQdp--~LF~GTIR~NLdp~---~~~sD----eeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
++++++||+| .+++.|+++||... ...++ +++.++++.+++.++....|..|
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 144 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANL 144 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 9999999999 46688999999621 12333 44788999999998887777544
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-19 Score=203.26 Aligned_cols=125 Identities=22% Similarity=0.421 Sum_probs=102.8
Q ss_pred eEEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCC----ChH
Q 000680 1215 RIELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM----GLK 1287 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~---~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i----~l~ 1287 (1354)
.|+++||+++|+++. .++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 489999999996432 3599999999999999999999999999999999999999999999999999764 356
Q ss_pred HHhccCceecccc--cccccchhhhcCCC--C-CCC----HHHHHHHHHHcCCc-hHHhcCC
Q 000680 1288 DLRVKLSIIPQEP--TLFRGSVRTNLDPL--G-LYS----DDEIWKALEKCQLK-TTISSLP 1339 (1354)
Q Consensus 1288 ~LR~~isiVpQdp--~LF~GTIR~NLdp~--~-~~s----DeeI~~AL~~a~l~-~~I~~Lp 1339 (1354)
.+|++|++|||+| .+|.+|+++||... . ..+ ++.+.++++.+++. +.....|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 143 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP 143 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCc
Confidence 7899999999998 58989999999521 1 123 34566788888886 4443333
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-18 Score=193.04 Aligned_cols=125 Identities=25% Similarity=0.395 Sum_probs=104.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHH---Hhcc
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LRVK 1292 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~---LR~~ 1292 (1354)
|+++|++++|+++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+++.+. +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 35999999999999999999999999999999999999999999999999998876544 6889
Q ss_pred Cceeccccccc-ccchhhhcCCC---CCCCH----HHHHHHHHHcCCchHHhcCCCC
Q 000680 1293 LSIIPQEPTLF-RGSVRTNLDPL---GLYSD----DEIWKALEKCQLKTTISSLPNK 1341 (1354)
Q Consensus 1293 isiVpQdp~LF-~GTIR~NLdp~---~~~sD----eeI~~AL~~a~l~~~I~~Lp~g 1341 (1354)
++++||+|.+| ..|+++|+... ...++ +++.++++..++.+...+.|..
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 137 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQ 137 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchh
Confidence 99999999875 66999999521 11232 3467889999998876665543
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-18 Score=198.72 Aligned_cols=120 Identities=24% Similarity=0.442 Sum_probs=102.6
Q ss_pred cceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccC-----CCCCEEEEcCeeCCC--CC
Q 000680 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MG 1285 (1354)
Q Consensus 1213 ~G~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e-----~~~G~I~IDGvDI~~--i~ 1285 (1354)
...|+++||+++|+. ..+|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.|+.. .+
T Consensus 11 ~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 11 NIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 457999999999964 349999999999999999999999999999999999988 689999999999863 56
Q ss_pred hHHHhccCceecccccccccchhhhcCCCC---CC---CHHHHHHHHHHcCCchH
Q 000680 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDPLG---LY---SDDEIWKALEKCQLKTT 1334 (1354)
Q Consensus 1286 l~~LR~~isiVpQdp~LF~GTIR~NLdp~~---~~---sDeeI~~AL~~a~l~~~ 1334 (1354)
..++|++++++||+|.+|.+|+++|+.... .+ .++++.++++.+++.+.
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 143 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE 143 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch
Confidence 778899999999999999999999996321 11 24567888999887543
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.5e-19 Score=197.05 Aligned_cols=124 Identities=33% Similarity=0.477 Sum_probs=104.5
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCC---hHHHhcc
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDLRVK 1292 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~---l~~LR~~ 1292 (1354)
++++|++++|..+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 35999999999999999999999999999999999999999999999999999887 5678899
Q ss_pred Cceecccccccc-cchhhhcCC-C-----------C---CCCHHHHHHHHHHcCCchHHhcCCC
Q 000680 1293 LSIIPQEPTLFR-GSVRTNLDP-L-----------G---LYSDDEIWKALEKCQLKTTISSLPN 1340 (1354)
Q Consensus 1293 isiVpQdp~LF~-GTIR~NLdp-~-----------~---~~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1354)
++++||++.+|. .|+++|+.. . + ...++++.++++..++.+.....|.
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD 143 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc
Confidence 999999999887 699999942 1 1 1124567888999999776655443
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=186.00 Aligned_cols=96 Identities=30% Similarity=0.644 Sum_probs=90.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
|+++|++++|+.+..++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+++.+.+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57999999996543459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccchhhhc
Q 000680 1296 IPQEPTLFRGSVRTNL 1311 (1354)
Q Consensus 1296 VpQdp~LF~GTIR~NL 1311 (1354)
+||+|.+|++|+++|+
T Consensus 81 ~~q~~~~~~~tv~~~l 96 (173)
T cd03246 81 LPQDDELFSGSIAENI 96 (173)
T ss_pred ECCCCccccCcHHHHC
Confidence 9999999999999996
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-19 Score=193.36 Aligned_cols=121 Identities=23% Similarity=0.352 Sum_probs=104.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
|+++|++++|. + .++|+|+||++++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++.+. ..+|+++++
T Consensus 1 l~~~~l~~~~~-~-~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYG-K-KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEEC-C-eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 57999999995 3 3599999999999999999999999999999999999999999999999999865 667889999
Q ss_pred eccccccc-ccchhhhcCCC---CCCCHHHHHHHHHHcCCchHHhcCCC
Q 000680 1296 IPQEPTLF-RGSVRTNLDPL---GLYSDDEIWKALEKCQLKTTISSLPN 1340 (1354)
Q Consensus 1296 VpQdp~LF-~GTIR~NLdp~---~~~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1354)
+||++.+| +.|+++|+... ...+++++.++++..++.+.....|.
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 125 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVK 125 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHh
Confidence 99999888 46999999532 12357788999999999887765444
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.3e-19 Score=201.77 Aligned_cols=125 Identities=26% Similarity=0.398 Sum_probs=103.7
Q ss_pred EEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCC----CChHH
Q 000680 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS----MGLKD 1288 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~---~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~----i~l~~ 1288 (1354)
|+++||+++|+++. +++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|++||.+++. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996433 259999999999999999999999999999999999999999999999999963 34677
Q ss_pred HhccCceecccc--cccccchhhhcCCC--C-CCC----HHHHHHHHHHcCCc-hHHhcCCC
Q 000680 1289 LRVKLSIIPQEP--TLFRGSVRTNLDPL--G-LYS----DDEIWKALEKCQLK-TTISSLPN 1340 (1354)
Q Consensus 1289 LR~~isiVpQdp--~LF~GTIR~NLdp~--~-~~s----DeeI~~AL~~a~l~-~~I~~Lp~ 1340 (1354)
+|+++++|+|+| .+|.+|+.+|+... . ..+ ++++.++++.+++. ++....|.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPF 143 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcc
Confidence 899999999998 79999999999521 1 122 33577889999995 45544443
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-19 Score=176.40 Aligned_cols=126 Identities=25% Similarity=0.418 Sum_probs=107.9
Q ss_pred EEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCceecccccc
Q 000680 1223 IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302 (1354)
Q Consensus 1223 f~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isiVpQdp~L 1302 (1354)
.+|.....++|+++||++.+||.++|.||||||||||++.+.-+..|++|.++.-|.|+++++.+.+|++++|+-|.|.|
T Consensus 9 ~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paL 88 (223)
T COG4619 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPAL 88 (223)
T ss_pred HHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccc
Confidence 35765566799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcC-CCC----CCCHHHHHHHHHHcCCchHHhcCCCCcCCCCcc
Q 000680 1303 FRGSVRTNLD-PLG----LYSDDEIWKALEKCQLKTTISSLPNKLDSSGKL 1348 (1354)
Q Consensus 1303 F~GTIR~NLd-p~~----~~sDeeI~~AL~~a~l~~~I~~Lp~gldt~G~n 1348 (1354)
|.|||.+|+- |+. ..+.+.-.+-|+++++.+.+-+.+--=-++|+.
T Consensus 89 fg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~ 139 (223)
T COG4619 89 FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEK 139 (223)
T ss_pred cccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHH
Confidence 9999999984 542 234556677889999988876555433445553
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-18 Score=196.41 Aligned_cols=124 Identities=31% Similarity=0.466 Sum_probs=103.9
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCCh---HHHhcc
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l---~~LR~~ 1292 (1354)
|+++||+++|..+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+++. ..+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 7899999999633 459999999999999999999999999999999999999999999999999987764 457899
Q ss_pred Cceecccccccc-cchhhhcCC-C-----------CC---CCHHHHHHHHHHcCCchHHhcCCC
Q 000680 1293 LSIIPQEPTLFR-GSVRTNLDP-L-----------GL---YSDDEIWKALEKCQLKTTISSLPN 1340 (1354)
Q Consensus 1293 isiVpQdp~LF~-GTIR~NLdp-~-----------~~---~sDeeI~~AL~~a~l~~~I~~Lp~ 1340 (1354)
++++||+|.+|. .|+++|+.. . +. ..++++.++++..++.+.....+.
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD 144 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc
Confidence 999999999886 599999952 1 01 123467888999999876655443
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.8e-19 Score=196.24 Aligned_cols=127 Identities=28% Similarity=0.465 Sum_probs=106.6
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChH---HHh
Q 000680 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLR 1290 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~---~LR 1290 (1354)
|+++|++++|+... .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+.. ..|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 2599999999999999999999999999999999999999999999999999887654 358
Q ss_pred ccCceecccccccc-cchhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1291 VKLSIIPQEPTLFR-GSVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1291 ~~isiVpQdp~LF~-GTIR~NLdp~---~~~----sDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
++++++||+|.+|. .|+++|+... ... .++++.++++..++.+.....|..|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 141 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQL 141 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhC
Confidence 89999999999997 5999998521 111 2457889999999988776655443
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-18 Score=193.55 Aligned_cols=128 Identities=23% Similarity=0.339 Sum_probs=108.3
Q ss_pred eEEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHH---H
Q 000680 1215 RIELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---L 1289 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~---L 1289 (1354)
.|+++|++++|+++. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 599999999996532 24999999999999999999999999999999999999999999999999999887654 3
Q ss_pred -hccCceeccccccccc-chhhhcCC---CCCC----CHHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1290 -RVKLSIIPQEPTLFRG-SVRTNLDP---LGLY----SDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1290 -R~~isiVpQdp~LF~G-TIR~NLdp---~~~~----sDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
+++++++||+|.+|.+ |+++|+.. +... .++++.++++..++.+.....|..|
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 147 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQL 147 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhC
Confidence 3689999999999986 99999852 1111 2456888999999998887777654
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-18 Score=200.04 Aligned_cols=124 Identities=27% Similarity=0.436 Sum_probs=104.2
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCC--CCChHHHhcc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC--SMGLKDLRVK 1292 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~--~i~l~~LR~~ 1292 (1354)
-|+++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+. ..+...+|++
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 49999999999633 35999999999999999999999999999999999999999999999999984 3456788999
Q ss_pred Cceecccc--cccccchhhhcCCC---CCCC----HHHHHHHHHHcCCchHHhcCC
Q 000680 1293 LSIIPQEP--TLFRGSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLP 1339 (1354)
Q Consensus 1293 isiVpQdp--~LF~GTIR~NLdp~---~~~s----DeeI~~AL~~a~l~~~I~~Lp 1339 (1354)
++++||+| .+|+.|+++|+... ...+ ++.+.++++..++.++....+
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 139 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPT 139 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCc
Confidence 99999998 57899999999521 1123 245678889999987654433
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-18 Score=192.27 Aligned_cols=125 Identities=30% Similarity=0.479 Sum_probs=104.4
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHH---h
Q 000680 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL---R 1290 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~--~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~L---R 1290 (1354)
|+++||+++|.+.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+++..+. |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 359999999999999999999999999999999999999999999999999998876553 4
Q ss_pred -ccCceecccccccc-cchhhhcCC---CCCCC----HHHHHHHHHHcCCchHHhcCCC
Q 000680 1291 -VKLSIIPQEPTLFR-GSVRTNLDP---LGLYS----DDEIWKALEKCQLKTTISSLPN 1340 (1354)
Q Consensus 1291 -~~isiVpQdp~LF~-GTIR~NLdp---~~~~s----DeeI~~AL~~a~l~~~I~~Lp~ 1340 (1354)
++++++||+|.+|. .|+++|+.. ....+ ++++.++++..++.+.....|.
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 140 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPS 140 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh
Confidence 68999999999996 599999952 11122 3457889999999877665554
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-18 Score=192.99 Aligned_cols=123 Identities=28% Similarity=0.406 Sum_probs=103.4
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
++++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+++.+ ..|+++++
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 478999999953 35999999999999999999999999999999999999999999999999998754 35788999
Q ss_pred ecccccccc-cchhhhcCCC---CCC----CHHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1296 IPQEPTLFR-GSVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1296 VpQdp~LF~-GTIR~NLdp~---~~~----sDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
+||+|.+|. .|+++|+... ... .++++.++++..++.++....|..|
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 131 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHEL 131 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhC
Confidence 999999986 5999999521 111 2346788999999988776665443
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-18 Score=198.18 Aligned_cols=126 Identities=28% Similarity=0.389 Sum_probs=109.4
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCc
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~is 1294 (1354)
.++++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+...+|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999953 35999999999999999999999999999999999999999999999999999988889999999
Q ss_pred eeccccccccc-chhhhcCCC-C----------CCCHHHHHHHHHHcCCchHHhcCCCCc
Q 000680 1295 IIPQEPTLFRG-SVRTNLDPL-G----------LYSDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1295 iVpQdp~LF~G-TIR~NLdp~-~----------~~sDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
++||++.+|.+ |+++|+... . ...++++.++++.+++.++....|..|
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 148 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSL 148 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccC
Confidence 99999887765 999999521 0 112456889999999988777766543
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-18 Score=198.18 Aligned_cols=127 Identities=22% Similarity=0.349 Sum_probs=108.4
Q ss_pred eEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccC
Q 000680 1215 RIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1354)
Q Consensus 1215 ~I~f~nVsf~Y~~~-~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~i 1293 (1354)
-|+++||+++|... ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999642 23599999999999999999999999999999999999999999999999999988888899999
Q ss_pred ceecccc--cccccchhhhcCCC-C--CCCHH----HHHHHHHHcCCchHHhcCCCC
Q 000680 1294 SIIPQEP--TLFRGSVRTNLDPL-G--LYSDD----EIWKALEKCQLKTTISSLPNK 1341 (1354)
Q Consensus 1294 siVpQdp--~LF~GTIR~NLdp~-~--~~sDe----eI~~AL~~a~l~~~I~~Lp~g 1341 (1354)
+++||+| .++..|+.+||... . ..+++ ++.++++.+++.++....|..
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPAR 140 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCccc
Confidence 9999998 46788999999621 1 23333 457889999998887665544
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-18 Score=185.43 Aligned_cols=95 Identities=32% Similarity=0.612 Sum_probs=88.4
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEECCCCccHHHHHHHHhcccCCCCCEEEEcCeeCCCCChHHHhccCce
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 I~f~nVsf~Y~~~~~~VLk~Isf~I~~GekVgIVGrTGSGKSTL~~lL~R~~e~~~G~I~IDGvDI~~i~l~~LR~~isi 1295 (1354)
|+++|++++|+...+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++... ...+|+++++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 579999999965434699999999999999999999999999999999999999999999999999877 6778999999
Q ss_pred ecccccccccchhhhc
Q 000680 1296 IPQEPTLFRGSVRTNL 1311 (1354)
Q Consensus 1296 VpQdp~LF~GTIR~NL 1311 (1354)
+||+|.+|++|+++|+
T Consensus 80 ~~q~~~~~~~tv~~~i 95 (178)
T cd03247 80 LNQRPYLFDTTLRNNL 95 (178)
T ss_pred EccCCeeecccHHHhh
Confidence 9999999999999997
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1354 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 5e-57 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 8e-46 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 2e-45 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-45 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-45 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-45 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-45 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-44 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-44 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 3e-44 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 5e-44 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-43 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-43 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-41 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-37 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-06 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 7e-28 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 4e-07 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-24 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-24 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-22 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-22 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-22 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-06 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 9e-22 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 6e-14 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-21 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 4e-14 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-21 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-10 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 7e-20 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-19 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-19 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-04 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-19 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-19 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-19 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 5e-19 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 8e-19 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-18 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-12 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-18 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-18 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-17 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 4e-04 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-16 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-15 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 4e-14 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 5e-14 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 9e-14 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-13 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 4e-13 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 6e-13 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-12 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-12 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-12 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-11 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-11 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-11 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-10 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-10 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-10 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-10 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-10 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 6e-10 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 6e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 6e-09 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 7e-09 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 1e-08 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-08 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 6e-08 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-08 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 9e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 3e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 6e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 3e-07 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-07 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 5e-07 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 7e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 7e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-06 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-06 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 1e-06 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 2e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-06 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 3e-06 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 8e-06 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-05 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 2e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-05 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 2e-04 | ||
| 3uwx_A | 972 | Crystal Structure Of Uvra-Uvrb Complex Length = 972 | 2e-04 | ||
| 3ux8_A | 670 | Crystal Structure Of Uvra Length = 670 | 2e-04 | ||
| 2r6f_A | 972 | Crystal Structure Of Bacillus Stearothermophilus Uv | 3e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 3e-04 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 7e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972 | Back alignment and structure |
|
| >pdb|3UX8|A Chain A, Crystal Structure Of Uvra Length = 670 | Back alignment and structure |
|
| >pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 406 bits (1045), Expect = e-132
Identities = 96/259 (37%), Positives = 137/259 (52%), Gaps = 1/259 (0%)
Query: 561 QVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620
+V + + AF + + + + S +FS L P L+ +N I
Sbjct: 2 TTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKI 61
Query: 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILY 680
+ Q +AV GS GAGK+SLL I+GE+ G + G I++ SQ SWI G+I++NI+
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII- 120
Query: 681 GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740
G D+ RY IKAC L++DI+ F D +G+ G+ LSGGQ+ RI LARAVY DAD+
Sbjct: 121 GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180
Query: 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
YL D PF +D T +F CV + KT ILVT ++E L + D+IL+L G G
Sbjct: 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG 240
Query: 801 NYQELLLAGTAFEQLVNAH 819
+ EL F +
Sbjct: 241 TFSELQNLRPDFSSKLMGC 259
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 6e-20
Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 22/163 (13%)
Query: 1182 ISVERIKQFM--HIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCT 1239
+ +E + F ++ + + + P VLK I
Sbjct: 5 VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINFK 60
Query: 1240 FSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQE 1299
G + V G TG+GKT+L+ + +EP+ G I G ++S Q
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQN 107
Query: 1300 PTLFRGSVRTNLDPLGL-YSDDEIWKALEKCQLKTTISSLPNK 1341
+ G+++ N+ +G+ Y + ++ CQL+ IS K
Sbjct: 108 SWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEK 148
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 391 bits (1007), Expect = e-127
Identities = 91/228 (39%), Positives = 129/228 (56%), Gaps = 1/228 (0%)
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650
+ V ++ W+ P L+ +N I+ Q +AV GS GAGK+SLL I+GE+
Sbjct: 3 TTTEVVMENVTAFWEEGGT-PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61
Query: 651 SGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
G + G I++ SQ SWI G+I++NI++G D+ RY IKAC L++DI+ F D
Sbjct: 62 EGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDN 121
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
+G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF +D T +F CV + K
Sbjct: 122 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 181
Query: 771 TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
T ILVT ++E L + D+IL+L G G + EL F +
Sbjct: 182 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMG 229
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 6e-17
Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 21/132 (15%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
+ + + + VLK I G + V G TG+GKT+L+ + +EP+ G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL----YSDDEIWKALEK 1328
I G ++S Q + G+++ N+ + Y + ++
Sbjct: 64 KIKHSG-------------RISFCSQFSWIMPGTIKENI----IFGVSYDEYRYRSVIKA 106
Query: 1329 CQLKTTISSLPN 1340
CQL+ IS
Sbjct: 107 CQLEEDISKFAE 118
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 391 bits (1008), Expect = e-127
Identities = 109/228 (47%), Positives = 151/228 (66%), Gaps = 3/228 (1%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
S+ ++ F+W PTL G+ I +AV G VG GKSSLL A+L E+ K+ G
Sbjct: 3 SITVRNATFTWARSDP-PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 654 VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
V + GS+AYV Q +WIQ+ S+R+NIL+G +++ Y I+ACAL D+ GD TEI
Sbjct: 62 VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI 121
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV--MAALEKKT 771
G++G+NLSGGQKQR+ LARAVY++ADIYLFDDP SAVDAH +F + L+ KT
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKT 181
Query: 772 VILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819
ILVTH + +L +VD I+V+ GG+I++ G+YQELL AF + + +
Sbjct: 182 RILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTY 229
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 4e-15
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
I +R + + P L GIT + EG V VVG+ G GK++L+SAL ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL----YSDDEIWKALEKC 1329
+ I G ++ +PQ+ + S+R N+ L + ++ C
Sbjct: 62 VAIKG-------------SVAYVPQQAWIQNDSLRENI----LFGCQLEEPYYRSVIQAC 104
Query: 1330 QLKTTISSLPN 1340
L + LP+
Sbjct: 105 ALLPDLEILPS 115
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 319 bits (819), Expect = 3e-90
Identities = 206/1099 (18%), Positives = 416/1099 (37%), Gaps = 136/1099 (12%)
Query: 326 ITKVVESFTQRHCF-FGSRRSGMRMRSALMVAVYQKQLKLSSLGRK------KHSTGEIV 378
++ ++ Q + + R ++R ++ + H GE+
Sbjct: 119 AGVLIVAYIQVSFWCLAAGRQIHKIRQKF----------FHAIMNQEIGWFDVHDVGELN 168
Query: 379 NYIAVDAYR----MGEFPFWFHLTWSLALQLFLAIGVLFGV-------VGLGALPGLVLF 427
+ D + +G+ + Q F + + L L +
Sbjct: 169 TRLTDDVSKINEGIGD-------KIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVL 221
Query: 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKF-----KSLI 482
+ + +AKIL + + A + E+L ++ + ++K +L
Sbjct: 222 GLSAGI---WAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLE 278
Query: 483 ESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATL 542
E++R K ++ A +IY + + G +L S + + TV ++
Sbjct: 279 EAKRLGIKKAITANISMGAAFLLIYAS----YALAFWYGTSLVISKEYSIGQVLTVFFSV 334
Query: 543 RSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH--ELNNDDVRRISLQKSDRSVKIQEG 600
V + + + + ++D+ +++ +++ +
Sbjct: 335 LIGAFSVGQASPNIEAFANARGAAYEVFK-IIDNKPSIDSFSKSGHKPDNIQGNLEFKNI 393
Query: 601 NFSWD--PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTV 654
+FS+ E + L+G+NL +K Q +A+ G+ G GKS+ + + + + G V
Sbjct: 394 HFSYPSRKE--VQILKGLNLKVKSGQTVALVGNSGCGKST----TVQLMQRLYDPLDGMV 447
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACAL--- 698
++ G I VSQ + + +I +NI YG+ D+ KA
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE--DVTMDEIEKAVKEANA 505
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
I H T +G+RG LSGGQKQRI +ARA+ + I L D+ SA+D + A
Sbjct: 506 YDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV- 564
Query: 759 FNECVMAALEK----KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814
V AAL+K +T I++ H++ + D I +GG I + GN+ EL+ + +
Sbjct: 565 ----VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFK 620
Query: 815 LVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLT 874
LV L N ++++ + + + + R+ + + +
Sbjct: 621 LVMTQT--AGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKL 678
Query: 875 EDEEMEIGDVGWKPFMDYLNVSKG-MSLLCLGVLAQSGFVGLQAAATYWLAYAIQI---- 929
+E DV F L ++ +G+ GLQ A + + + +
Sbjct: 679 STKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNG 738
Query: 930 -----PKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPML 984
+ S + ++ + S + + + F G +K S+ + +
Sbjct: 739 GPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVS 798
Query: 985 FFDST--PVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAI 1042
+FD G + TRL++D + + + + + L I I WQ+ ++ +
Sbjct: 799 WFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLL 858
Query: 1043 FA---MVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN 1099
+ V+ ++ + E + T+ + +F
Sbjct: 859 AIVPIIAIAGVVEMKMLSGQALKDK---KELEGSGKIATEAIENFRTVVSLTREQKFETM 915
Query: 1100 YLKLVDI---DASLFFHTNGVMEWLILRVEALQNLTLFTAALFL----VLIPRGYVAPG- 1151
Y + + I +A H G+ Q + F+ A L+ + +
Sbjct: 916 YAQSLQIPYRNAMKKAHVFGIT------FSFTQAMMYFSYAAAFRFGAYLVTQQLMTFEN 969
Query: 1152 --LVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSS 1209
LV ++ + G +S + A +S I + + PE + P+
Sbjct: 970 VLLVFSAIVFGAMAVGQ---VSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNM 1026
Query: 1210 WPFKGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV 1267
+G ++ + Y RP+ P VL+G++ +G + +VG +G GK+T++ L R
Sbjct: 1027 --LEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083
Query: 1268 EPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL---DPLGLYSDDEIWK 1324
+P GS+ +DG +I + ++ LR +L I+ QEP LF S+ N+ D + S +EI +
Sbjct: 1084 DPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVR 1143
Query: 1325 ALEKCQLKTTISSLPNKLD 1343
A ++ + I SLP+K +
Sbjct: 1144 AAKEANIHQFIDSLPDKYN 1162
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 8e-45
Identities = 109/543 (20%), Positives = 226/543 (41%), Gaps = 75/543 (13%)
Query: 323 CLIITKVVESFTQRHCFFG--SRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNY 380
L I + F Q FG R+R + ++ ++ + S K++TG +
Sbjct: 757 ILGIISFITFFLQ-GFTFGKAGEILTKRLRYMVFKSMLRQDV--SWFDDPKNTTGALTTR 813
Query: 381 IAVDAYRMGEFPFWFHLTWSLALQ----LFLAIGVLF------GVVGLGALPGLVLFLIC 430
+A DA ++ ++ Q L I + ++ L +P + I
Sbjct: 814 LANDAAQVKGA---TGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVP---IIAIA 867
Query: 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEF 490
G++ K+L + + + +E + N + + + E+KF+++ + +
Sbjct: 868 GVV---EMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPY 924
Query: 491 KWLSEAQLRKAYGTVIYWMSPTIISSVIFL----GCALTGSAPLNASTIFTVLATL---- 542
+ A + + + + ++ G L + + V + +
Sbjct: 925 R---NAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGA 981
Query: 543 RSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH--ELNNDDVRRISLQKSDRSVKIQEG 600
++G+ P+ + VS I +++ E+++ + + + +V+
Sbjct: 982 MAVGQVSSFAPD----YAKATVSASHIIR-IIEKTPEIDSYSTQGLKPNMLEGNVQFSGV 1036
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISG- 652
F++ +IP L+G++L++K Q +A+ GS G GKS+++ + G + + G
Sbjct: 1037 VFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV-FLDGK 1095
Query: 653 ---TVNLY---GSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACAL---DKDIN 703
+N+ + VSQ + SI +NI YG Y++ ++A + I+
Sbjct: 1096 EIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID 1155
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ T +G +G LSGGQKQRI +ARA+ I L D+ SA+D + V
Sbjct: 1156 SLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKV-----V 1210
Query: 764 MAALEK----KTVILVTHQVEFLSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
AL+K +T I++ H+ LS + D I+V++ G++ + G +Q+LL + +V
Sbjct: 1211 QEALDKAREGRTCIVIAHR---LSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMV 1267
Query: 817 NAH 819
+
Sbjct: 1268 SVQ 1270
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 1e-35
Identities = 82/415 (19%), Positives = 152/415 (36%), Gaps = 23/415 (5%)
Query: 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSS 1000
Y G+ + Y + F + F ++I + +FD VG + TRL+
Sbjct: 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTD 173
Query: 1001 DLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAR 1060
D+S ++ I I + I W++ +V + + +
Sbjct: 174 DVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILS 233
Query: 1061 ELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120
A E + T+ AF + + Y ++ L
Sbjct: 234 SFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITAN- 292
Query: 1121 LILRVEALQNLTLFTAALFL----VLIPRGYVAPGLVGLSLSY----AFTLTGTQVFLSR 1172
+ + A L + AL L+ + G V AF++ +
Sbjct: 293 --ISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE- 349
Query: 1173 WYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRY--RPNAP 1230
AN + + + + P + + P + +G +E + + Y R
Sbjct: 350 ---AFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDN--IQGNLEFKNIHFSYPSRKEVQ 404
Query: 1231 LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290
+LKG+ G V +VG +G GK+T + + RL +P G + IDG DI ++ ++ LR
Sbjct: 405 -ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463
Query: 1291 VKLSIIPQEPTLFRGSVRTNLDPLGLY--SDDEIWKALEKCQLKTTISSLPNKLD 1343
+ ++ QEP LF ++ N+ G + DEI KA+++ I LP++ D
Sbjct: 464 EIIGVVSQEPVLFATTIAENIR-YGREDVTMDEIEKAVKEANAYDFIMKLPHQFD 517
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 255 bits (653), Expect = 2e-75
Identities = 59/159 (37%), Positives = 89/159 (55%), Gaps = 7/159 (4%)
Query: 1199 AIVE--DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGK 1256
+++E + WP G++ ++ L +Y +L+ I+ + S G RVG++GRTGSGK
Sbjct: 1 SLIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGK 60
Query: 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL 1316
+TL+SA RL+ G I IDGV S+ L+ R +IPQ+ +F G+ R NLDP
Sbjct: 61 STLLSAFLRLLNTEG-EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAA 119
Query: 1317 YSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSA 1351
+SD EIWK ++ L++ I P KLD G + S
Sbjct: 120 HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSH 158
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-27
Identities = 67/316 (21%), Positives = 111/316 (35%), Gaps = 39/316 (12%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
+ +++ + L ++ I Q++ + G G+GKS+LL A L + G
Sbjct: 19 QMTVKDLTAKYTEGGN-AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-LLNTEGE 76
Query: 654 V-------------NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDK---ARYDKAIKACA 697
+ + + Q +I SG+ R N+ P K
Sbjct: 77 IQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL---DPNAAHSDQEIWKVADEVG 133
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
L I F + G LS G KQ + LAR+V + A I L D+P + +D T
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ- 192
Query: 758 LFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL-AGTAFEQLV 816
+ + A TVIL ++E + E D+ LV+E ++ Q + EL F
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 817 NAH--------------RDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPR--KES 860
D + P+ N Q + GI P S
Sbjct: 253 IGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPS 312
Query: 861 SEGEISVKGLTQLTED 876
++ ++G Q+ E
Sbjct: 313 DIADVILEGEVQVVEQ 328
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 2e-51
Identities = 122/579 (21%), Positives = 241/579 (41%), Gaps = 60/579 (10%)
Query: 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVN--YSNRGEENLQEGLSIVGCLIITKVVES 332
Y + I ++ A LL ++ + N L+ ++ L+ + +
Sbjct: 23 YKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSG 82
Query: 333 FTQRHCFFG-SRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEF 391
F +C S M+MR L + + + + STG +++ I D+ ++
Sbjct: 83 FASSYCLSWVSGNVVMQMRRRL----FNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGA 138
Query: 392 PFWFHLTWSL------ALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQ 445
+ +L + + ++F +L +V+ + +K +K
Sbjct: 139 -----TSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKIS 193
Query: 446 SEFMIAQDERLRSTSEILNNMKIIKL---QSWE-EKFKSLIESRREKEFKWLSEAQLRKA 501
A S ++L K++ Q E ++F + S R++ K +
Sbjct: 194 RNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMK---LVSAQSI 250
Query: 502 YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQ 561
VI ++ + +V+FL + A L T V + + + P++ + S +
Sbjct: 251 ADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQR 310
Query: 562 VKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIK 621
+ + L+D E D+ + ++ + V +++ F++ + P L V+ I
Sbjct: 311 GMAACQTLFG-LMDLETERDN-GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIP 367
Query: 622 WAQKIAVCGSVGAGKSSLL------YAIL-GEIPKISGT-------VNLYGSIAYVSQTS 667
+ +A+ G G+GKS++ Y + G I + G NL A VSQ
Sbjct: 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI-CLDGHDVRDYKLTNLRRHFALVSQNV 426
Query: 668 WIQSGSIRDNILYGKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725
+ + +I +NI Y + + + ++A + + I N G T IG+ G +LSGGQ+
Sbjct: 427 HLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVILVTHQVEF 781
QR+ +ARA+ DA + + D+ SA+D + + AAL++ KTV+++ H+
Sbjct: 487 QRVAIARALLRDAPVLILDEATSALDTESERA-----IQAALDELQKNKTVLVIAHR--- 538
Query: 782 LSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
LS + D ILV++ G+I + G + +LL A+ QL
Sbjct: 539 LSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHR 577
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 2e-48
Identities = 82/469 (17%), Positives = 172/469 (36%), Gaps = 49/469 (10%)
Query: 901 LLCLGVLAQSGFVGLQAAATYWLAYAI---------QIPKITSGILIGVYAGVSTASAVF 951
L + +A L + +I +++G+ +
Sbjct: 26 GLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMF----VRGLS 81
Query: 952 VYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPF 1011
+ S+ + + N P+ FFD G +L+R++ D +
Sbjct: 82 GFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSR 141
Query: 1012 SIVFVAASGTELLAIIGIMTFVTWQ----VLVVAIFAMVAVRFVQRYYIATARELIRING 1067
++V + G ++ ++ +M + +WQ ++VVA A+ FV + + +R + G
Sbjct: 142 ALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMG 201
Query: 1068 TTKAPVMNYTAETSQGVVTIRAFNM-----------VDRFFQNYLKLVDIDASLFFHTNG 1116
V + + +G + ++ + Q +KLV +
Sbjct: 202 H----VTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIAD----P 253
Query: 1117 VMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176
V++ + +L + A + R + PG + S F L L+
Sbjct: 254 VIQMIA----SLALFAVLFLASVDSI--RAELTPGTFTVVFSAMFGLMRPLKALTSVTSE 307
Query: 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGI 1236
+ + + + M + E K G ++++ + Y+ L +
Sbjct: 308 FQRGMAACQTLFGLMDLETE---RDNGKYEAE--RVNGEVDVKDVTFTYQGKEKPALSHV 362
Query: 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
+ + +G V +VGR+GSGK+T+ + R + GSI +DG D+ L +LR +++
Sbjct: 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALV 422
Query: 1297 PQEPTLFRGSVRTN--LDPLGLYSDDEIWKALEKCQLKTTISSLPNKLD 1343
Q LF ++ N G Y+ ++I +A + I ++P LD
Sbjct: 423 SQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLD 471
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 4e-51
Identities = 120/579 (20%), Positives = 248/579 (42%), Gaps = 60/579 (10%)
Query: 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVN--YSNRGEENLQEGLSIVGCLIITKVVES 332
+ I I +L + LL ++ + L +V L+I + + S
Sbjct: 23 FKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITS 82
Query: 333 FTQRHCFFG-SRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEF 391
+ +C S + M MR L + + + K STG +++ I D+ ++
Sbjct: 83 YISSYCISWVSGKVVMTMRRRL----FGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASS 138
Query: 392 PFWFHLTWSLAL---QLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEF 448
+ +L + IG+ + ++L ++ ++++ + ++ +S
Sbjct: 139 -----SSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSIS 193
Query: 449 MIAQDERLRSTS---EILNNMKIIKL---QSWE-EKFKSLIESRREKEFKWLSEAQLRKA 501
Q+ + T+ ++L K + + Q E ++F + R + K
Sbjct: 194 KNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMK---MVSASSI 250
Query: 502 YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQ 561
+I ++ ++ V++ + L A TI V +++ ++ P++ + + +
Sbjct: 251 SDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310
Query: 562 VKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIK 621
+ + A +LD E D+ +R + ++ ++ + F++ +P LR +NL I
Sbjct: 311 GMAACQTLFA-ILDSEQEKDEGKR-VIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIP 367
Query: 622 WAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGT-------VNLYGSIAYVSQTS 667
+ +A+ G G+GKS++ I G I + G +L +A VSQ
Sbjct: 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHI-LMDGHDLREYTLASLRNQVALVSQNV 426
Query: 668 WIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725
+ + ++ +NI Y + + + ++A + IN D+G T IG+ G+ LSGGQ+
Sbjct: 427 HLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR 486
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVILVTHQVEF 781
QRI +ARA+ D+ I + D+ SA+D + + AAL++ +T +++ H+
Sbjct: 487 QRIAIARALLRDSPILILDEATSALDTESERA-----IQAALDELQKNRTSLVIAHR--- 538
Query: 782 LSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
LS + D I+V+E G I + G + ELL + QL
Sbjct: 539 LSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 577
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 4e-50
Identities = 85/470 (18%), Positives = 168/470 (35%), Gaps = 49/470 (10%)
Query: 901 LLCLGVLAQSGFVGLQAAATYWLAYAI---------QIPKITSGILIGVYAGVSTASAVF 951
L + +A L + + ++IG+ +
Sbjct: 26 GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMI----LRGIT 81
Query: 952 VYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPF 1011
Y S+ + + K + P+ FFD G +L+R++ D +
Sbjct: 82 SYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSG 141
Query: 1012 SIVFVAASGTELLAIIGIMTFVTWQ----VLVVAIFAMVAVRFVQRYYIATARELIRING 1067
+++ V G ++ + +M + +WQ ++V+A +A+R V + + R + +
Sbjct: 142 ALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF----RSISKNMQ 197
Query: 1068 TTKAPVMNYTAETSQGVVTIRAFNM-----------VDRFFQNYLKLVDIDASLFFHTNG 1116
T V + +G + F ++ +K+V +
Sbjct: 198 NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISD----P 253
Query: 1117 VMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176
+++ + +L + AA F + + G + + S L L+
Sbjct: 254 IIQLIA----SLALAFVLYAASFPSV--MDSLTAGTITVVFSSMIALMRPLKSLTNVNAQ 307
Query: 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGI 1236
+ + + + + E E KR G +E R + Y L+ I
Sbjct: 308 FQRGMAACQTLFAILDSEQE---KDEGKRVID--RATGDLEFRNVTFTYPGREVPALRNI 362
Query: 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
G V +VGR+GSGK+T+ S + R + G IL+DG D+ L LR +++++
Sbjct: 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALV 422
Query: 1297 PQEPTLFRGSVRTN--LDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS 1344
Q LF +V N YS ++I +A I+ + N LD+
Sbjct: 423 SQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDT 472
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 1e-48
Identities = 118/587 (20%), Positives = 227/587 (38%), Gaps = 66/587 (11%)
Query: 275 YLKENIFIAICALLRTIAVVVGPLLL-----YAFVNYSNRGEENLQEGLSIVGC-LIITK 328
Y I +++ ++ PLL+ N++ +E + +G L I
Sbjct: 12 YKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFV 71
Query: 329 VVESFTQR-HCFFGSR---RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVD 384
+V + + + +R L Y LS+ + G++++ + D
Sbjct: 72 IVRPPIEFIRQYLAQWTSNKILYDIRKKL----YNHLQALSARFYANNQVGQVISRVIND 127
Query: 385 AYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVG----LGALPGLVLFLICGLLNVPFAKI 440
+ +F + L + ++L + + L L I +
Sbjct: 128 VEQTKDF-----ILTGL-MNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 441 LQKCQSEFMIAQDERLRSTS---EILNNMKIIKLQSWE----EKFKSLIESRREKEFKWL 493
+ + E + + ++K + E + F + + L
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTR---AL 238
Query: 494 SEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIP 553
+ I ++ VI +G L S + T+ + L + P+R +
Sbjct: 239 KHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLV 298
Query: 554 EALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTL 613
+ + + Q S DR+ + + + V ++ + I +F ++ P L
Sbjct: 299 ASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPIL 357
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGT-------VNLYGS 659
+ +NL I+ + +A G G GKS+L+ I G+I I G +L
Sbjct: 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI-LIDGHNIKDFLTGSLRNQ 416
Query: 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
I V Q + + S ++++NIL G+P +A K I N G TE+G+RG+
Sbjct: 417 IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV 476
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVIL 774
LSGGQKQR+ +AR N+ I + D+ SA+D + + + AL+ +T ++
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI-----IQEALDVLSKDRTTLI 531
Query: 775 VTHQVEFLS---EVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
V H+ LS D+I+V+E G I ++G ++EL+ A+E L +
Sbjct: 532 VAHR---LSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI 575
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 1e-47
Identities = 80/457 (17%), Positives = 163/457 (35%), Gaps = 36/457 (7%)
Query: 902 LCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAH 961
L + + + L + R + A
Sbjct: 35 LLIKYAIDGVINNHALTTDEKVHHLT---IAIGIALFIFVI----VRPPIEFIRQYLAQW 87
Query: 962 LGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGT 1021
K N + F+ + VG++++R+ +D+ I ++ +
Sbjct: 88 TSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCI 147
Query: 1022 ELLAIIGIMTFVTWQ----VLVVAIFAMVAVRFV----QRYYIATARELIRINGTTKAPV 1073
++ + IM F+ + L + F ++ V ++ ++ L + G
Sbjct: 148 TIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQG------ 201
Query: 1074 MNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL 1133
+ E QG+ +++F + D +N+ K + + + + ++
Sbjct: 202 --FLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGP 259
Query: 1134 FTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH 1192
L G + G + + Y L G L + L S++R+ Q +
Sbjct: 260 IIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319
Query: 1193 IPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRT 1252
+ I +GRI++ + +Y N +LK I + +G V VG +
Sbjct: 320 EDYD---IKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMS 376
Query: 1253 GSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD 1312
G GK+TLI+ + R + G ILIDG +I LR ++ ++ Q+ LF +V+ N+
Sbjct: 377 GGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI- 435
Query: 1313 PLGLY-----SDDEIWKALEKCQLKTTISSLPNKLDS 1344
L +D+E+ +A + I +LP D+
Sbjct: 436 ---LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDT 469
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 6e-43
Identities = 98/452 (21%), Positives = 183/452 (40%), Gaps = 85/452 (18%)
Query: 395 FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDE 454
+ L+ L I + + G LF + +Q+ + DE
Sbjct: 159 VSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLF-----------RKIQE-------STDE 200
Query: 455 RLRSTSEILNNMKIIKLQSWEEKFKSLIESRR-EKEFKWLSEAQLRKAYGTVIYWMSPTI 513
R E L +++++ EE E+ K + L + + ++I + P
Sbjct: 201 VNRVVRENLLGVRVVRAFRREEY-----ENENFRKANESLRRSIIS--AFSLIVFALPLF 253
Query: 514 -------ISSVIFLGCALTGSAPLNASTI-------FTVLATLRSMGEPVRMIPEALSIM 559
+ +V++ G L + + +I ++ +L +G + I A
Sbjct: 254 IFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRA---- 309
Query: 560 IQVKVSFDRINAFLLDHELN-NDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNL 618
S R+ +L+ + + ++L + SV + F + E P L GVN
Sbjct: 310 ---SASAKRVLE-VLNEKPAIEEADNALALPNVEGSVSFENVEFRY-FENTDPVLSGVNF 364
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGT-------VNLYGSIAYVS 664
+K +AV G G+GKS+L+ I G + ++ +L G I+ V
Sbjct: 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV-EVDELDVRTVKLKDLRGHISAVP 423
Query: 665 QTSWIQSGSIRDNILYGKP------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
Q + + SG+I++N+ +G+ + +A A A D I + G + + + G
Sbjct: 424 QETVLFSGTIKENLKWGREDATDDEIVEA----AKIAQIHDF-IISLPEGYDSRVERGGR 478
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK----TVIL 774
N SGGQKQR+ +ARA+ + + DD S+VD T + + L++ T +
Sbjct: 479 NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI-----LDGLKRYTKGCTTFI 533
Query: 775 VTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+T ++ D+ILVL G++ G ++ELL
Sbjct: 534 ITQKIPTALLADKILVLHEGKVAGFGTHKELL 565
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 3e-36
Identities = 91/447 (20%), Positives = 182/447 (40%), Gaps = 72/447 (16%)
Query: 932 ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLF----FD 987
+ +GIL+ + A + + + FA+ AS+ F + +F+ + F +
Sbjct: 63 LKTGILMLIVALIGAVGGIGC---TVFAS----YASQNFGADLRRDLFRKVLSFSISNVN 115
Query: 988 STPVGRILTRLSSD-----------LSILDFDIPF----SIVFVAASGTELLAIIGIMTF 1032
++TRL++D L I+ P IV + +L +++ +
Sbjct: 116 RFHTSSLITRLTNDVTQLQNLVMMLLRIV-VRAPLLFVGGIVMAVSINVKLSSVLIFL-- 172
Query: 1033 VTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNM 1092
+ + + + + + +N + E GV +RAF
Sbjct: 173 ----IPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVR--------ENLLGVRVVRAFRR 220
Query: 1093 ----VDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV-----LI 1143
+ F + L ++ + + L + + ++ L+
Sbjct: 221 EEYENENFRKANESL----RRSIISAFSLIVFAL----PLFIFIVNMGMIAVLWFGGVLV 272
Query: 1144 PRGYVAPG-LVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202
+ G ++ +Y + + + + ++ S +R+ + ++ E PAI E
Sbjct: 273 RNNQMEIGSIMAY-TNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLN---EKPAIEE 328
Query: 1203 DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISA 1262
+ +G + ++ RY N VL G+ + G+ V V+G TGSGK+TL++
Sbjct: 329 ADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNL 388
Query: 1263 LFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY----- 1317
+ RL++P G + +D +D+ ++ LKDLR +S +PQE LF G+++ NL +
Sbjct: 389 IPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENL----KWGREDA 444
Query: 1318 SDDEIWKALEKCQLKTTISSLPNKLDS 1344
+DDEI +A + Q+ I SLP DS
Sbjct: 445 TDDEIVEAAKIAQIHDFIISLPEGYDS 471
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 1e-41
Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 30/238 (12%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL------YAILGEIPKISG-- 652
NFS+ + TL+ +N I A+ G G+GKS++ Y G+I KI G
Sbjct: 24 NFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI-KIGGKN 82
Query: 653 --TVN---LYGSIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
N + I V Q + + + +I+ NILYGK KA K+ L I
Sbjct: 83 VNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALP 142
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
T +G +G+ LSGG++QRI +AR + D I +FD+ S++D+ T A
Sbjct: 143 KKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL-----FQKA 197
Query: 767 LEK----KTVILVTHQVEFLSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
+E +T+I++ H+ LS + + I++L G+I + G +++LL + ++ N
Sbjct: 198 VEDLRKNRTLIIIAHR---LSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-26
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 1199 AIVEDKRPPSSWPFKGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGK 1256
+ F IE + Y + N LK I GT +VG TGSGK
Sbjct: 1 GLESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHR-TLKSINFFIPSGTTCALVGHTGSGK 59
Query: 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL 1316
+T+ L+R + G I I G ++ +R + I+PQ+ LF +++ N+ L
Sbjct: 60 STIAKLLYRFYDAEG-DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI----L 114
Query: 1317 Y-----SDDEIWKALEKCQLKTTISSLPNKLD 1343
Y +D+E+ KA + QL I +LP K D
Sbjct: 115 YGKLDATDEEVIKATKSAQLYDFIEALPKKWD 146
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 1e-41
Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 34/240 (14%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGT 653
+F++D LR ++ + + IA G G GKS++ + GEI I G
Sbjct: 8 DFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI-TIDGQ 64
Query: 654 -------VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYD--KAIKACALDKDINN 704
N I +VSQ S I +G+IR+N+ YG D D + + + N
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
TE+G+RG+ +SGGQ+QR+ +ARA + I + D+ +++D+ + + V
Sbjct: 125 MPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM-----VQ 179
Query: 765 AALEK----KTVILVTHQVEFLSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
AL+ +T +++ H+ LS + D+I +E GQIT SG + EL+ + + V+
Sbjct: 180 KALDSLMKGRTTLVIAHR---LSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 6e-30
Identities = 33/130 (25%), Positives = 71/130 (54%), Gaps = 3/130 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ R + Y ++ +L+ I+ + + G +G GK+T+ S L R +P G I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD--PLGLYSDDEIWKALEKCQLKT 1333
IDG I ++ L++ R ++ + Q+ + G++R NL G Y+D+++W+ L+ ++
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1334 TISSLPNKLD 1343
+ ++P++L+
Sbjct: 121 FVENMPDQLN 130
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 8e-40
Identities = 99/498 (19%), Positives = 181/498 (36%), Gaps = 80/498 (16%)
Query: 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGI-------LI 938
+ + YL L + + + L + Y + I + +
Sbjct: 25 LRRLLGYLRPHTF--TLIMVFVFVTVSSILGVLSPYLIGKTID--VVFVPRRFDLLPRYM 80
Query: 939 GVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRL 998
+ + +++ + + L + + P+ FFD TP G I++R+
Sbjct: 81 LILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRV 140
Query: 999 SSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQ----VLVVAIFAMVAVRFV--- 1051
+D+ ++ + SI+ + L + +M V L + ++ + V
Sbjct: 141 INDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQ 200
Query: 1052 -QRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDI--DA 1108
++Y+ R L ++NG E G+ I+ F ++ + + ++ +
Sbjct: 201 TRKYFYENQRVLGQLNG--------IIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKV 252
Query: 1109 SL---FFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVG--LSLSYAFTL 1163
F +GV+ L L G+ G L+L T+
Sbjct: 253 GTKAQIF--SGVL----------PPLMNMVNNL-------GFALISGFGGWLALKDIITV 293
Query: 1164 TGTQVFL--SRWYC-------YLANYIIS----VERIKQFMHIPPEPPAIVEDKRPPSSW 1210
F+ SR + N I ERI + + + E D
Sbjct: 294 GTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD----DPDAVELR 349
Query: 1211 PFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA 1270
+G IE + + Y P+ LK IT G +V +VG TGSGKTT+++ L R +
Sbjct: 350 EVRGEIEFKNVWFSYDKKKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD 408
Query: 1271 GGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY-----SDDEIWKA 1325
G IL+DG+DI + LR + I+ Q+ LF +V+ NL Y +D+EI +A
Sbjct: 409 RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENL----KYGNPGATDEEIKEA 464
Query: 1326 LEKCQLKTTISSLPNKLD 1343
+ I LP +
Sbjct: 465 AKLTHSDHFIKHLPEGYE 482
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 4e-38
Identities = 133/612 (21%), Positives = 250/612 (40%), Gaps = 93/612 (15%)
Query: 260 SNNNGNLVRKVITNVYLKEN----IFIAICALLRTIAVVVGPLLLYAFVN--YSNRGEEN 313
N +R+++ YL+ + I + + + +I V+ P L+ ++ + R +
Sbjct: 18 LKNPTATLRRLLG--YLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDL 75
Query: 314 LQEGLSIVGCLIITKVVESFTQRHCFFG-SRRSGMRMRSALMVAVYQKQLKLSSLGRK-- 370
L + I+G + + + Q S+ R+R L KL +
Sbjct: 76 LPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFE-------KLQRVPVGFF 128
Query: 371 -KHSTGEIVNYIA--VDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVG----LGALPG 423
+ G+I++ + VD L S+ Q F I L G V + +
Sbjct: 129 DRTPHGDIISRVINDVDNINNV-------LGNSII-QFFSGIVTLAGAVIMMFRVNVILS 180
Query: 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTS---EILNNMKIIKLQSWEEKFKS 480
LV I L + + + + F Q + E ++ + +IKL + EEK
Sbjct: 181 LVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKE-- 238
Query: 481 LIESRREKEFKWLSEAQLRKAYGTVIY--WMSPTI--ISSVIFLGCALTGS--APLNAST 534
++F ++E+ + I+ + P + ++++ F + G A + T
Sbjct: 239 ------MEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIIT 292
Query: 535 IFTVLATL---RSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKS 591
+ T+ + R P+ + +++ S +RI L D E DD + L++
Sbjct: 293 VGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEIL-DLEEEKDDPDAVELREV 351
Query: 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL------YAIL- 644
++ + FS+D + P L+ + IK QK+A+ G G+GK++++ Y +
Sbjct: 352 RGEIEFKNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR 409
Query: 645 GEIPKISGT-------VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYD--KAIKA 695
G+I + G +L SI V Q + + S ++++N+ YG P + +A K
Sbjct: 410 GQI-LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEIKEAAKL 467
Query: 696 CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT- 754
D I + G T + G +LS GQ+Q + + RA + I + D+ S VD T
Sbjct: 468 THSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTE 527
Query: 755 ----AATLFNECVMAAL-EKKTVILVTHQVEFLS---EVDRILVLEGGQITQSGNYQELL 806
AA M L E KT I++ H+ L+ D I+VL G+I + G + EL+
Sbjct: 528 KSIQAA-------MWKLMEGKTSIIIAHR---LNTIKNADLIIVLRDGEIVEMGKHDELI 577
Query: 807 LAGTAFEQLVNA 818
+ +L +
Sbjct: 578 QKRGFYYELFTS 589
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 2e-39
Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 33/237 (13%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGT 653
+FS+ TL+ V+ + Q +A+ G GAGKS++L + G I +I G
Sbjct: 60 HFSYADG--RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI-RIDGQ 116
Query: 654 -------VNLYGSIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNF 705
+L I V Q + + + +I DNI YG+ + A +A + I F
Sbjct: 117 DISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAF 176
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
G T++G+RGL LSGG+KQR+ +AR + I L D+ SA+D + A
Sbjct: 177 PEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERA-----IQA 231
Query: 766 ALEK----KTVILVTHQVEFLSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+L K +T I+V H+ LS V D+ILV++ G I + G ++ LL G + +
Sbjct: 232 SLAKVCANRTTIVVAHR---LSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADM 285
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 4e-29
Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 14/183 (7%)
Query: 1167 QVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYR 1226
I +E + + E + + KGRIE + Y
Sbjct: 9 HHSSGLVPRGSHM-FIDMENMFDLLKEETE---VKDLPGAGPLRFQKGRIEFENVHFSYA 64
Query: 1227 PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL 1286
L+ ++ T G + +VG +G+GK+T++ LFR + + G I IDG DI +
Sbjct: 65 DGRE-TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY-----SDDEIWKALEKCQLKTTISSLPNK 1341
LR + ++PQ+ LF ++ N+ Y +DE+ A + + I + P
Sbjct: 124 ASLRSHIGVVPQDTVLFNDTIADNI----RYGRVTAGNDEVEAAAQAAGIHDAIMAFPEG 179
Query: 1342 LDS 1344
+
Sbjct: 180 YRT 182
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 1e-38
Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 32/227 (14%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISG-- 652
F + P+ L +NL IK + I + G G+GKS+L I G++ I G
Sbjct: 15 FRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV-LIDGHD 72
Query: 653 --TVNLY---GSIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
+ + V Q + + + SI DNI P M + A K I+
Sbjct: 73 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 132
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
G T +G++G LSGGQ+QRI +ARA+ N+ I +FD+ SA+D + +M
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV-----IMRN 187
Query: 767 LEK----KTVILVTHQVEFLSEV---DRILVLEGGQITQSGNYQELL 806
+ K +TVI++ H+ LS V DRI+V+E G+I + G ++ELL
Sbjct: 188 MHKICKGRTVIIIAHR---LSTVKNADRIIVMEKGKIVEQGKHKELL 231
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 1e-32
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 9/137 (6%)
Query: 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG 1271
I R ++ RY+P++P++L I + +G +G+VGR+GSGK+TL + R P
Sbjct: 4 HHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 1272 GSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY-----SDDEIWKAL 1326
G +LIDG D+ LR ++ ++ Q+ L S+ N+ S +++ A
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI----SLANPGMSVEKVIYAA 119
Query: 1327 EKCQLKTTISSLPNKLD 1343
+ IS L +
Sbjct: 120 KLAGAHDFISELREGYN 136
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 4e-38
Identities = 59/236 (25%), Positives = 101/236 (42%), Gaps = 36/236 (15%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISG----TVNLY- 657
+ L+G+ + + A+ G G+GKS++ + G++ + G + +
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV-LLDGEPLVQYDHHY 90
Query: 658 --GSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACAL---DKDINNFDHGDLTE 712
+A V Q + S R+NI YG ++ I+ F G TE
Sbjct: 91 LHTQVAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGAHDFISGFPQGYDTE 149
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--- 769
+G+ G LSGGQ+Q + LARA+ + + D+ SA+DA V L +
Sbjct: 150 VGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLR-----VQRLLYESPE 204
Query: 770 ---KTVILVTHQVEFLSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819
+TV+L+T Q LS IL L+ G + + G + +L+ G + +V A
Sbjct: 205 WASRTVLLITQQ---LSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVEAL 257
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 4e-29
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 1211 PFKGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268
KG ++ + + Y PN VL+G+T T G +VG GSGK+T+ + L L +
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQ-VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 1269 PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY------SDDEI 1322
P GG +L+DG + L +++ + QEP LF S R N+ Y + +EI
Sbjct: 71 PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI----AYGLTRTPTMEEI 126
Query: 1323 WKALEKCQLKTTISSLPNKLD 1343
+ IS P D
Sbjct: 127 TAVAMESGAHDFISGFPQGYD 147
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 39/224 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L+ ++ I K + G GAGK++LL + P SGTVNL+G
Sbjct: 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96
Query: 659 -SIAYVSQT---SWIQSGSIRDNIL---------YGKPMDKARYDKAIKACALDKDINNF 705
I +VS + + + + D ++ Y D+ R ++A + L
Sbjct: 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR-NEAHQ--LLKL----V 149
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN--ECV 763
Q LS G+KQR+ +ARA+ + + D+P + +D +L + + +
Sbjct: 150 GMSAK--AQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSL 207
Query: 764 MAALEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELL 806
+ +I VTH +E + +IL+L+ GQ Q G +++L
Sbjct: 208 SDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 8e-11
Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I+L Q+ + +LK I+ ++G + + G G+GKTTL++ L G++
Sbjct: 22 IQLDQIGRMKQGKT--ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 1276 IDGVDICSMG--LKDLRVKLSIIPQEPTL---FRGSVRTNL-----DPLGLY---SDDEI 1322
+ G +G + +R + + V + +G+Y D+
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR 139
Query: 1323 WKALE 1327
+A +
Sbjct: 140 NEAHQ 144
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 3e-28
Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 34/211 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVS 664
L +NL++ +K+ + G G+GK++LL AI G +P SG + + G I Y +
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPY-SGNIFINGMEVRKIRNYIRYST 78
Query: 665 Q--TSWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
++ ++ D + K +D+ + + +KA L ++I ++ +
Sbjct: 79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR------RKLYK---- 128
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KTVILVTH 777
LS GQ ++ + A+ + +I D+PF VDA + +++ K ILVTH
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRY-----IKEYGKEGILVTH 183
Query: 778 -QVEFLSEVDRILVL-EGGQITQSGNYQELL 806
+ G ++ + ELL
Sbjct: 184 ELDMLNLYKEYKAYFLVGNRLQGPISVSELL 214
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 16/124 (12%)
Query: 1216 IELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
I+L+ + I + L+ I G +V ++G GSGKTTL+ A+ L+ P G+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG--SVRTN----LDPLGLYSDDEIWKALE 1327
I I+G+++ + +R + P + +V + GL D + L+
Sbjct: 60 IFINGMEV-----RKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGL-DRDLFLEMLK 113
Query: 1328 KCQL 1331
+L
Sbjct: 114 ALKL 117
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
++++ ++ F + E + + +N D+ +AV G G GKS+LL +LG I
Sbjct: 2 NKALSVENLGFYYQAENFL--FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 652 GTVNLYGSIAYVSQT-SWIQSGSIRDNILYGKPMDKARY------------DKAIKACAL 698
G + +Y SI +V Q S + S+ D +L G R D + AL
Sbjct: 60 GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMG------RSTHINTFAKPKSHDYQVAMQAL 113
Query: 699 DK-DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
D ++ + + T LSGGQ+Q I +ARA+ ++ + L D+P SA+D
Sbjct: 114 DYLNLTHLAKREFTS-------LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDI 166
Query: 758 LFNECV-MAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQ 798
+ + + +A + TV+ THQ + + ++ L+L
Sbjct: 167 VLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF 209
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ + L Y+ + + + ++G + V+G+ G GK+TL+ L + P G I
Sbjct: 5 LSVENLGFYYQ-AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTL-FRGSVR 1308
+ + +PQ + F SV
Sbjct: 64 VYQ-------------SIGFVPQFFSSPFAYSVL 84
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-24
Identities = 39/194 (20%), Positives = 79/194 (40%), Gaps = 21/194 (10%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
L + ++ + + G G GK++L+ + G + G +++ Q +
Sbjct: 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPK 425
Query: 671 S-GSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726
G++R + G+ ++ +K +D I+ +LSGG+ Q
Sbjct: 426 FPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQ-----------HLSGGELQ 474
Query: 727 RIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMAALEKKTVILVTHQVEFLS 783
R+ + A+ ADIYL D+P + +D+ + + KKT +V H +
Sbjct: 475 RVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR--FILHNKKTAFIVEHDFIMAT 532
Query: 784 EV-DRILVLEGGQI 796
+ D+++V EG
Sbjct: 533 YLADKVIVFEGIPS 546
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 1e-17
Identities = 39/218 (17%), Positives = 71/218 (32%), Gaps = 51/218 (23%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---------------- 659
+ Q + + G+ G GKS+ L + G+ G +
Sbjct: 96 RLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNY 155
Query: 660 --------------IAYVSQTSWIQSGSIR---DNILYGKPMDKARYDKAIKACALDKDI 702
YV G ++ + + + IK
Sbjct: 156 FTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKIL------ 209
Query: 703 NNFDHGDLTEIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
L + +R + LSGG+ QR + + +AD+Y+FD+P S +D
Sbjct: 210 ------QLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQ- 262
Query: 762 CVMAAL--EKKTVILVTHQVEFLSEV-DRILVLEGGQI 796
++ +L K VI V H + L + D + ++ G
Sbjct: 263 -IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 23/154 (14%), Positives = 41/154 (26%), Gaps = 15/154 (9%)
Query: 1195 PEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGS 1254
+ VL FS+ + ++G G+
Sbjct: 330 RTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGT 389
Query: 1255 GKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT--LFRGSVRTNLD 1312
GKTTLI L ++P G + + K++ LF +R
Sbjct: 390 GKTTLIKLLAGALKPDEGQDIPKL------NVSMKPQKIAPKFPGTVRQLFFKKIRGQFL 443
Query: 1313 PLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSG 1346
+ ++ ++ I L SG
Sbjct: 444 -----NPQFQTDVVKPLRIDDIIDQEVQHL--SG 470
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 6e-05
Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 20/122 (16%)
Query: 1224 RYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVD--- 1280
RY N+ T G +G+VG G GK+T + L +P G
Sbjct: 86 RYSANS--FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEI 143
Query: 1281 ICSMGLKDLR--------------VKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKAL 1326
I +L+ +K + P +G V+ + L L ++ + +
Sbjct: 144 IKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL-RMEKSPEDV 202
Query: 1327 EK 1328
++
Sbjct: 203 KR 204
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 1e-22
Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 28/198 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVS 664
L + + I+ + G G GK++LL I + + G + G I ++
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84
Query: 665 QTSWIQSG-SIRDNI-----LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
+ + S+ D + LYG ++K A+++ ++ ++ ++
Sbjct: 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV------------EVLDLKKKLG 132
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LS G +R+QLA + +A+IY+ DDP A+D + + + EK VI+ +
Sbjct: 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR- 191
Query: 779 VEFLSEVDRILVLEGGQI 796
E LS D L
Sbjct: 192 -EELSYCDVNENLHKYST 208
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 4e-12
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 14/123 (11%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+R L + Y L+ IT T +G V G G GKTTL+ + ++P G I+
Sbjct: 11 LEIRDLSVGYDKPV---LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPLG-LY----SDDEIWKALEKC 1329
+GV I ++ K+ +P+E + R SV L + LY + +EI ALE
Sbjct: 68 YNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 122
Query: 1330 QLK 1332
++
Sbjct: 123 EVL 125
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 6e-22
Identities = 46/250 (18%), Positives = 94/250 (37%), Gaps = 33/250 (13%)
Query: 569 INAFLLDH-ELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIP---------TLRGVNL 618
IN FL + N +R ++ + V + + ++ L N
Sbjct: 230 INNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNG 289
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWI-QSGSIR- 675
+ K + I + G G GK++ ++GEI G+V ++Y Q + G+++
Sbjct: 290 EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ 349
Query: 676 ---DNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732
+ +++ K L + + + + +LSGG+ Q++ +A
Sbjct: 350 YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN-----------DLSGGELQKLYIAA 398
Query: 733 AVYNDADIYLFDDPFSAVDAHT---AATLFNECVMAALEKKTVILVTHQVEFLSEV-DRI 788
+ +AD+Y+ D P S +D A + K ++ H + + DRI
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKR--VTRERKAVTFIIDHDLSIHDYIADRI 456
Query: 789 LVLEGGQITQ 798
+V +G
Sbjct: 457 IVFKGEPEKA 466
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 1e-17
Identities = 47/227 (20%), Positives = 80/227 (35%), Gaps = 48/227 (21%)
Query: 613 LRGVNLDI-KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------ 659
+ L K + V G G GK+++L + GEI G N
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 660 ------------------IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
I YV S G++ N + K ++ + D+ + +
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASKFLKGTV--NEILTKIDERGKKDEVKELLNMTNL 131
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
N + LSGG QR+ +A ++ +AD+Y+FD P S +D +
Sbjct: 132 WNKDAN-----------ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK- 179
Query: 762 CVMAAL-EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+ L + K VI+V H + L + D I ++ G +
Sbjct: 180 -AIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYA 225
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-08
Identities = 32/162 (19%), Positives = 54/162 (33%), Gaps = 22/162 (13%)
Query: 1191 MHIPPEP--PAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGV 1248
M I P+ + E S K +++ ++ + L EG +G+
Sbjct: 243 MKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF---QLVVDNGEAKEGEIIGI 299
Query: 1249 VGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVR 1308
+G G GKTT L + GS+ + + L K I G+V+
Sbjct: 300 LGPNGIGKTTFARILVGEITADEGSVTPEK--------QILSYKPQRIFPNY---DGTVQ 348
Query: 1309 TNL-DPLGLY---SDDEIWKALEKCQLKTTISSLPNKLDSSG 1346
L + S + ++ L + S N L SG
Sbjct: 349 QYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDL--SG 388
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 7e-04
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 1224 RYRPNAPLVLKGITC-TFSEGTRVGVVGRTGSGKTTLISALFRLVEP--AGGSILIDGVD 1280
RY+ N K T T +GV+G+ G GKTT++ L + P + + +
Sbjct: 8 RYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDE 64
Query: 1281 ICSMGLKDLR-VKLSIIPQEP 1300
+ LK R ++ +E
Sbjct: 65 V----LKRFRGKEIYNYFKEL 81
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-21
Identities = 43/189 (22%), Positives = 78/189 (41%), Gaps = 21/189 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS- 671
L +I+ + I + G G GK++ + + G G V ++AY Q +
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYE 431
Query: 672 GSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728
G++ + + K + +K + + +LSGG+ QR+
Sbjct: 432 GTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----------DLSGGELQRV 480
Query: 729 QLARAVYNDADIYLFDDPFSAVDAHT---AATLFNECVMAALEKKTVILVTHQVEFLSEV 785
+A + DADIYL D+P + +D + + +KT ++V H V + V
Sbjct: 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH--LMEKNEKTALVVEHDVLMIDYV 538
Query: 786 -DRILVLEG 793
DR++V EG
Sbjct: 539 SDRLIVFEG 547
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 1e-17
Identities = 42/223 (18%), Positives = 73/223 (32%), Gaps = 50/223 (22%)
Query: 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA---------------------- 661
+ + G G GK++ + + G++ N
Sbjct: 118 MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIR 177
Query: 662 ------YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
YV G +R+ + K + + ++ N +L +
Sbjct: 178 PVVKPQYVDLLPKAVKGKVREL------LKKVDEVGKFEEVVKELELENVLDRELHQ--- 228
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVI 773
LSGG+ QR+ +A A+ A Y FD+P S +D + V+ L E K V+
Sbjct: 229 ----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR--VIRRLANEGKAVL 282
Query: 774 LVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+V H + L + D I V+ G G Y +
Sbjct: 283 VVEHDLAVLDYLSDVIHVVYGE----PGVYGIFSKPKGTRNGI 321
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-08
Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 27/164 (16%)
Query: 1186 RIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTR 1245
R + + + V+ +R +E +L Y L+ +G
Sbjct: 335 RFRPYEIRFTKLSERVDVERET-------LVEYPRLVKDYGSFK---LEVEPGEIRKGEV 384
Query: 1246 VGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG 1305
+G+VG G GKTT + L + EP G + D ++ K +K + G
Sbjct: 385 IGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL----TVAYKPQYIKAE--------YEG 432
Query: 1306 SVR---TNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSG 1346
+V + +D L S+ + L+ + L SG
Sbjct: 433 TVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDL--SG 474
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 1224 RYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP------AGGSILID 1277
RY NA + +G VG+VG G+GKTT + L + P +I
Sbjct: 100 RYGVNA--FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIR 157
Query: 1278 GVDICSMGLKDLRV---KLSIIPQEP 1300
+ R+ ++ + +
Sbjct: 158 AFRGNELQNYFERLKNGEIRPVVKPQ 183
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 1e-21
Identities = 61/261 (23%), Positives = 103/261 (39%), Gaps = 30/261 (11%)
Query: 549 VRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR----RISLQKSDRSVKIQEGNFSW 604
V P I Q K + + IN FL L +++VR I K+ V+I+
Sbjct: 231 VYGEPGVYGIFSQPKGTRNGINEFL-RGYLKDENVRFRPYEIKFTKTGERVEIERETLVT 289
Query: 605 DPELAIP----TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI 660
P L L +IK + I + G G GK++ + + G G + ++
Sbjct: 290 YPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTV 349
Query: 661 AYVSQTSWIQS-GSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
AY Q G++ + + K + +K + + +
Sbjct: 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVN--------- 400
Query: 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMAALEKKTVI 773
LSGG+ QR+ +A + DADIYL D+P + +D + + +KT +
Sbjct: 401 --ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH--LMEKNEKTAL 456
Query: 774 LVTHQVEFLSEV-DRILVLEG 793
+V H V + V DR++V EG
Sbjct: 457 VVEHDVLMIDYVSDRLMVFEG 477
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 5e-16
Identities = 43/216 (19%), Positives = 78/216 (36%), Gaps = 46/216 (21%)
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--------PKISGTVNLY--------- 657
+K + + G G GKS+ + + G++ G + +
Sbjct: 39 YRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98
Query: 658 -----GSIA------YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFD 706
G I YV G + + + K + + ++ +KA L+ +
Sbjct: 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--KKADETGKLEEVVKALELENVLEREI 156
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+LSGG+ QR+ +A A+ +A Y FD+P S +D +
Sbjct: 157 Q-----------HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAAR--AIRR 203
Query: 767 L--EKKTVILVTHQVEFLSEV-DRILVLEGGQITQS 799
L E K+V++V H + L + D I V+ G
Sbjct: 204 LSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYG 239
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 5e-09
Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 15/114 (13%)
Query: 1195 PEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGS 1254
+ + +L Y L+ +G +G+VG G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFR---LEVEPGEIKKGEVIGIVGPNGI 323
Query: 1255 GKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVR 1308
GKTT + L + EP G I D ++ K +K + G+V
Sbjct: 324 GKTTFVKMLAGVEEPTEGKIEWDL----TVAYKPQYIKAD--------YEGTVY 365
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 21/117 (17%)
Query: 1216 IELRQLKI----RYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-- 1269
+ QL+ RY NA + EG VG+VG G+GK+T + L + P
Sbjct: 18 SHMEQLEEDCVHRYGVNA--FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL 75
Query: 1270 ----AGGSILIDGVDI--CSMGLKDLRV-KLSIIPQE------PTLFRGSVRTNLDP 1313
+I + L+ ++ + + P +G V L
Sbjct: 76 CGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK 132
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 59/236 (25%), Positives = 95/236 (40%), Gaps = 34/236 (14%)
Query: 594 SVKIQEGNFSWDP--ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
+++ + + L L V+L I + + V G+ G+GKS+LL + G I S
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 652 GTVNLYG----------SIAYVSQTSWIQ--SGSIRDNILYGKPM-------DKARYDKA 692
G V G +I Q Q + + D + + KA
Sbjct: 62 GDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFA-VKNFYPDRDPVPLVKKA 120
Query: 693 IKACALDKDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751
++ LD D R LSGG+K+R+ +A + ++ DI + D+P +D
Sbjct: 121 MEFVGLDFD----------SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLD 170
Query: 752 AHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806
L KTVIL++H +E + VDR++VLE G+ G E L
Sbjct: 171 REGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 1216 IELRQLKIRYRPNAPL---VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
IE+ + + PL L+ ++ +EG + V G TGSGK+TL+ + L+EP G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEP 1300
+L DG ++R + I Q P
Sbjct: 63 DVLYDGERK---KGYEIRRNIGIAFQYP 87
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 88.2 bits (218), Expect = 1e-17
Identities = 50/202 (24%), Positives = 76/202 (37%), Gaps = 26/202 (12%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE----IPKISGTVNLYGSIAYVSQT 666
L L +K A++ +CG G GKS+L+ AI P YV
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEEC-----RTVYVEHD 503
Query: 667 --SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724
S+ D + K + ++ L SGG
Sbjct: 504 IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISAL----------SGGW 553
Query: 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784
K ++ LARAV +ADI L D+P + +D A L + T I ++H FL
Sbjct: 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWL--VNYLNTC-GITSITISHDSVFLDN 610
Query: 785 V-DRILVLEGGQITQ-SGNYQE 804
V + I+ EG ++ + GN+ E
Sbjct: 611 VCEYIINYEGLKLRKYKGNFTE 632
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 6e-11
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVT 776
LSGGQK ++ LA + + + D+P + +D + L AL+ + VI++T
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL-----SKALKEFEGGVIIIT 955
Query: 777 HQVEFLSEV-DRILVLEGGQITQS-GNY 802
H EF + + + ++ G++T S N+
Sbjct: 956 HSAEFTKNLTEEVWAVKDGRMTPSGHNW 983
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 2e-07
Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 15/202 (7%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
VK+ F + P + P + +N + +IAV G GAGKS+L+ + GE+ SG V
Sbjct: 672 VKVTNMEFQY-PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 655 NLYG--SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+ IAY+ Q ++ S D + + + D++ + + + E
Sbjct: 731 YTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGE-------DRETMDRANRQINE 783
Query: 713 IGQRGLN---LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+N G +RI + + Y ++ F + + +M+
Sbjct: 784 NDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNA 843
Query: 770 KTVI--LVTHQVEFLSEVDRIL 789
LV + ++EVD
Sbjct: 844 WIPRGELVESHSKMVAEVDMKE 865
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 4e-06
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
K +++ ++ +Y + + I S +R+ V+G G+GK+TLI+ L + P G
Sbjct: 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
Query: 1273 SI 1274
+
Sbjct: 729 EV 730
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 15/109 (13%), Positives = 31/109 (28%), Gaps = 3/109 (2%)
Query: 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKG 1235
Y+ ++ + + +G +L + A ++L
Sbjct: 395 YMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGE-DLCNCEFSLAYGAKILLNK 453
Query: 1236 ITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM 1284
R G+ G G GK+TL+ A+ G + +
Sbjct: 454 TQLRLKRARRYGICGPNGCGKSTLMRAIAN--GQVDGFPTQEECRTVYV 500
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 50/244 (20%), Positives = 102/244 (41%), Gaps = 43/244 (17%)
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650
D +K++E N+++ L+G+N++IK + A+ G G GKS+L G +
Sbjct: 4 EDYILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS 61
Query: 651 SGTVNLYG-SIAYVSQTSW----------------IQSGSIRDNILYGKPMD-------- 685
SG + I Y + + S S+ ++ +G ++
Sbjct: 62 SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG-AVNMKLPEDEI 120
Query: 686 KARYDKAIKACALDKDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFD 744
+ R D A+K + + + LS GQK+R+ +A + + + + D
Sbjct: 121 RKRVDNALKRT------------GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILD 168
Query: 745 DPFSAVDAHTAATLFNECV-MAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802
+P + +D + + V M T+I+ TH ++ + D + V++ G++ GN
Sbjct: 169 EPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 228
Query: 803 QELL 806
+E+
Sbjct: 229 KEVF 232
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 6e-13
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 22/146 (15%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+++ +L Y LKGI G ++G G GK+TL +++P+ G IL
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 1276 IDGVDICS--MGLKDLRVKLSIIPQEPT--LFRGSVR-------TNLDPLGLYSDDEIWK 1324
D I G+ LR + I+ Q+P LF SV N + L +DEI K
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVN---MKL-PEDEIRK 122
Query: 1325 ----ALEKCQLKTTISSLPNKLDSSG 1346
AL++ ++ + L S
Sbjct: 123 RVDNALKRTGIEHLKDKPTHCL--SF 146
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 3e-17
Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 41/222 (18%)
Query: 616 VNLDIKWAQK-IAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGS-----------IAY 662
+N+D + + + G GAGKS L I G P G V L G+ I +
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGF 74
Query: 663 VSQTSWIQS------GSIRDNILYG-KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
V Q S+ NI YG + +++ D+ ++ +K + +
Sbjct: 75 V-----PQDYALFPHLSVYRNIAYGLRNVERVERDRRVRE-MAEK-------LGIAHLLD 121
Query: 716 RGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---T 771
R LSGG++QR+ LARA+ + L D+P SAVD T L E + ++++
Sbjct: 122 RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEE--LRFVQREFDVP 179
Query: 772 VILVTH-QVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812
++ VTH +E D + V+ G+I + G +EL A
Sbjct: 180 ILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE 221
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 5e-17
Identities = 43/220 (19%), Positives = 83/220 (37%), Gaps = 40/220 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659
L ++ +++ + + + G GAGKS+LL + G G++ G
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALH 74
Query: 660 IAYVSQTSWIQSG-SIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
AY+SQ + + + + A L + R
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL------------ALDDKLGR 122
Query: 717 GLN-LSGGQKQRIQLARA-------VYNDADIYLFDDPFSAVD-AHTAATLFNECVMAAL 767
N LSGG+ QR++LA + L D+P +++D A +A +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALSQ 181
Query: 768 EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+ +++ +H + R +L+GG++ SG +E+L
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
++L+ + L ++ G + +VG G+GK+TL++ + + GSI
Sbjct: 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 56
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEPTL-FRGSVR 1308
G + + L + + + Q+ T F V
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 6e-17
Identities = 75/280 (26%), Positives = 121/280 (43%), Gaps = 61/280 (21%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSIAYVSQTSW--- 668
L ++L + + + + G+ G GK++LL + G E P SG ++L G + T+
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-SGEISLSGKTIFSKNTNLPVR 78
Query: 669 -------IQSG------SIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+Q G ++ NI YG A+ + I+A L+ ++E
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEA-MLEL-------TGISE 130
Query: 713 IGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK- 770
+ R + LSGGQ+QR LARA+ D ++ L D+PFSA+D + + M A +
Sbjct: 131 LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED--MIAALRAN 188
Query: 771 --TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL-----------------LLAGT 810
+ + V+H + E L DRI V++ G+I Q+ + EL +
Sbjct: 189 GKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFIGEGIVFPAA 248
Query: 811 AFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTA-RPE 849
+NA A LG L Q GA +G RPE
Sbjct: 249 -----LNADGTADCRLGRL--PVQSGAPAGTRGTLLIRPE 281
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 4e-05
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
+ + L ++ VL I+ + G + ++G +G GKTTL+ L +P G I
Sbjct: 4 ALHIGHLSKSFQNTP--VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 1275 LIDGVDICSMG 1285
+ G I S
Sbjct: 62 SLSGKTIFSKN 72
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 3e-16
Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 52/219 (23%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYG-SIAYVS--QTS 667
L+G++L +K + +++ G+ G+GKS+LLY ILG + P G V L G + Y + + S
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPT-EGKVFLEGKEVDYTNEKELS 77
Query: 668 WIQSGSI---------------RDNI----LYGKPMDKARYDKAIKACALDKDINNFDHG 708
+++ + +N+ L K ++ L +
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL--LSE-------- 127
Query: 709 DLTEIGQRGLN----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
+G + LSGG++QR+ +ARA+ N+ + D+P +D+ VM
Sbjct: 128 --LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR-----VM 180
Query: 765 AALEK-----KTVILVTHQVEFLSEVDRILVLEGGQITQ 798
K ++++VTH+ E R L ++ G++
Sbjct: 181 DIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 3e-07
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ +K R +LKGI+ + +G V ++G +GSGK+TL+ L L P G +
Sbjct: 5 LRAENIKKVIRGYE--ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 1276 IDGVDICSMGLKDL 1289
++G ++ K+L
Sbjct: 63 LEGKEVDYTNEKEL 76
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 1e-15
Identities = 54/232 (23%), Positives = 97/232 (41%), Gaps = 49/232 (21%)
Query: 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIP-----KISGT-VNLYG 658
+ + L VN++I+ ++ + G GAGK++ + I G ++P V G
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73
Query: 659 S---------IAYVSQTSWIQS------GSIRDNILYG---KPMDKARYDKAIKACA--L 698
I V Q+ + +NI + M K K ++ A L
Sbjct: 74 KLIVPPEDRKIGMV-----FQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL 128
Query: 699 DKDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
D + + LSG Q+QR+ LARA+ D + L D+PFS +DA +
Sbjct: 129 D----------IHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178
Query: 758 LFNECVMAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+ ++ + T+++V+H + + DR+ VL G++ Q G ++L
Sbjct: 179 ARAL--VKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 5e-15
Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 48/217 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGS-----------I 660
+RGV+ I+ + + + G G+GK+++L I G E P G V + G +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT-KGDVWIGGKRVTDLPPQKRNV 89
Query: 661 AYVSQ--------TSWIQSGSIRDNILYG---KPMDKA-RYDKAIKACALDKDINNFDHG 708
V Q T + DN+ +G K + K + + +
Sbjct: 90 GLVFQNYALFQHMT-------VYDNVSFGLREKRVPKDEMDARVRELLRFMR-------- 134
Query: 709 DLTEIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
L R + LSGGQ+QR+ LARA+ + LFD+PF+A+D L + +
Sbjct: 135 -LESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTF--VRQV 191
Query: 768 EKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSG 800
+ T + VTH Q E L DR+LVL G + Q G
Sbjct: 192 HDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFG 228
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE ++ Y P ++G++ EG VG++G +GSGKTT++ + L P G +
Sbjct: 15 IEFVGVEKIY-PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 1276 IDGVDI 1281
I G +
Sbjct: 74 IGGKRV 79
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 71/242 (29%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYG-SIAYVSQT 666
I L V+L + Q V G+ GAGKS+L+ + L E P G+V + G + +S++
Sbjct: 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQELTTLSES 98
Query: 667 SW----------------IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
+ S ++ N+ P++ K
Sbjct: 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVAL--PLELDNTPKD------------------ 138
Query: 711 TEIGQR--------GL---------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753
E+ +R GL NLSGGQKQR+ +ARA+ ++ + L D SA+D
Sbjct: 139 -EVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 754 TAATLFNECVMAALEKK-------TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
T ++ L K T++L+TH+++ + + D + V+ G++ + E+
Sbjct: 198 TTRSIL------ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
Query: 806 LL 807
Sbjct: 252 FS 253
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-10
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
I+L + + + L ++ G GV+G +G+GK+TLI + L P GS
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 1274 ILIDGVDICSMGLKDLR 1290
+L+DG ++ ++ +L
Sbjct: 85 VLVDGQELTTLSESELT 101
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 57/228 (25%)
Query: 607 ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYG------ 658
E I L+ VNL+IK + +++ G G+GKS++L I+G + P G V +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPT-EGEVYIDNIKTNDL 72
Query: 659 -----------SIAYVSQT-SWIQSGSIRDNI----LYGKPMD---KARYDKAIKACALD 699
I +V Q + I + +N+ ++ + R +A++ L
Sbjct: 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC--LK 130
Query: 700 KDINNFDHGDLTEIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754
E+ +R N LSGGQ+QR+ +ARA+ N+ I L D P A+D+ T
Sbjct: 131 M----------AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKT 180
Query: 755 AATLFNECVMAALEK------KTVILVTHQVEFLSEVDRILVLEGGQI 796
+M L+K KTV++VTH + +RI+ L+ G++
Sbjct: 181 GEK-----IMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 1216 IELRQLKIRYR--PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
++L+ + Y+ LK + EG V ++G +GSGK+T+++ + L +P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1274 ILIDGVDICSMGLKDL 1289
+ ID + + +L
Sbjct: 62 VYIDNIKTNDLDDDEL 77
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-14
Identities = 61/218 (27%), Positives = 95/218 (43%), Gaps = 43/218 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGS-----------I 660
L ++L ++ + + G GAGK+ L I G +P SG + L G I
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLSPEKHDI 74
Query: 661 AYVSQ--------TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
A+V Q ++ N+ +G M K + K + +
Sbjct: 75 AFVYQNYSLFPHMN-------VKKNLEFGMRMKKIKDPKRVLD-TARD-------LKIEH 119
Query: 713 IGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK- 770
+ R L LSGG++QR+ LARA+ + I L D+P SA+D T ++ L KK
Sbjct: 120 LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREM--LSVLHKKN 177
Query: 771 --TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
TV+ +TH Q E DRI V+ G++ Q G +E+
Sbjct: 178 KLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 46/217 (21%), Positives = 90/217 (41%), Gaps = 38/217 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660
L+G++ +I+ + + G GAGK++ L I I SG V ++G I
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90
Query: 661 AYVSQTSWIQSG-SIRDNI-----LYGKPMD--KARYDKAIKACALDKDINNFDHGDLTE 712
+Y+ + + + + Y + ++A + L + I
Sbjct: 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK--------- 141
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV 772
R S G +++ +ARA+ + + + D+P S +D A + A+ E T+
Sbjct: 142 --DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 199
Query: 773 ILVTHQVEFLSEV----DRILVLEGGQITQSGNYQEL 805
++ +H + EV DRI ++ G I ++G +EL
Sbjct: 200 LVSSH---NMLEVEFLCDRIALIHNGTIVETGTVEEL 233
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ ++ L+ R +LKGI+ EG G++G G+GKTT + + L++P+ G +
Sbjct: 16 VVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPLG-LY------SDDEIWKALE 1327
+ G ++ + +R +S +P+E +R L + Y ++ + +A E
Sbjct: 74 VFGKNVVEEPHE-VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATE 132
Query: 1328 KCQLK 1332
L
Sbjct: 133 IAGLG 137
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 64/232 (27%), Positives = 98/232 (42%), Gaps = 60/232 (25%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYGS------- 659
L +NL IK + +A+ G G+GKS+LLY I G + SG +
Sbjct: 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT--SGKIYFDEKDVTELPP 72
Query: 660 ----IAYVSQTSWIQS------GSIRDNILYG---KPMDKARYDKAIKACALDKDINNFD 706
+ V Q+ ++ NI + + + DK ++ A I+
Sbjct: 73 KDRNVGLV-----FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKL- 126
Query: 707 HGDLTEIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----HTAAT 757
LN LSGGQ+QR+ +ARA+ + ++ L D+P S +DA A
Sbjct: 127 -----------LNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAE 175
Query: 758 LFNECVMAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
L L+K+ T + VTH Q E L+ DRI V+ G+I Q G E+
Sbjct: 176 L------KRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 9e-13
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 9/92 (9%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE--CVMAAL--EKKTVILV 775
LSGGQ+QR+ +ARA+ + D+ LFD+P SA+D L E +M L E KT+++V
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE----LVGEVLRIMQQLAEEGKTMVVV 209
Query: 776 THQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
TH++ F V ++ L G+I + G+ +++
Sbjct: 210 THEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 8e-09
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ + L RY + VLKG++ G + ++G +GSGK+T + + L +P+ G+I+
Sbjct: 7 LHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64
Query: 1276 IDGVDICSMGLKDLRVK 1292
++G +I + KD ++K
Sbjct: 65 VNGQNINLVRDKDGQLK 81
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 1e-12
Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 48/226 (21%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYGS------- 659
+ + GV+ ++K + +A+ G G GK++ L + G + SG +
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT--SGEIYFDDVLVNDIPP 72
Query: 660 ----IAYVSQTSWIQS------GSIRDNILYG---KPMDKARYDKAIKACA--LDKDINN 704
+ V Q+ ++ +NI + + + K +K + A L
Sbjct: 73 KYREVGMV-----FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLL----- 122
Query: 705 FDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ + R LSGGQ+QR+ LARA+ + LFD+P S +DA+ + E
Sbjct: 123 -----IDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAE-- 175
Query: 764 MAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+ L+++ T + VTH Q E ++ RI V G++ Q G E+
Sbjct: 176 IKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 2e-12
Identities = 64/235 (27%), Positives = 102/235 (43%), Gaps = 60/235 (25%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI--L-----GEIPKISGT-VNLYGS- 659
+ +R ++L++K + + + G G GK++ L I L G+I I V
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI-YIGDKLVADPEKG 73
Query: 660 ---------IAYVSQTSWIQS------GSIRDNILYG---KPMDKARYDKAIKACA--LD 699
IA V QS ++ DNI + + + + D+ ++ A L
Sbjct: 74 IFVPPKDRDIAMV-----FQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG 128
Query: 700 KDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----HT 754
LTE+ R LSGGQ+QR+ L RA+ ++L D+P S +DA
Sbjct: 129 ----------LTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 755 AATLFNECVMAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
A L L+++ T I VTH QVE ++ DRI V+ G + Q G+ E+
Sbjct: 179 RAEL------KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 2e-12
Identities = 64/230 (27%), Positives = 98/230 (42%), Gaps = 56/230 (24%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYGS------- 659
+ +NL IK + + + G G GK++ L I G E G +
Sbjct: 23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT--EGRIYFGDRDVTYLPP 80
Query: 660 ----IAYVSQTSWIQS------GSIRDNILYG---KPMDKARYDKAIKACA--LDKDINN 704
I+ V QS ++ +NI + K K DK ++ A L
Sbjct: 81 KDRNISMV-----FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ----- 130
Query: 705 FDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----HTAATLF 759
+ E+ R LSGGQ+QR+ +ARA+ + D+ L D+P S +DA A +
Sbjct: 131 -----IEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI- 184
Query: 760 NECVMAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
L++K T I VTH QVE ++ DRI V+ GQ+ Q G+ E+
Sbjct: 185 -----KKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 7e-12
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 9/92 (9%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC--VMAALEKK--TVILV 775
LSGGQ QR+ +ARA+ + I LFD+P SA+D + E VM L + T+++V
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE----MVGEVLSVMKQLANEGMTMVVV 215
Query: 776 THQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
TH++ F EV DR+L ++GG I + G ++L
Sbjct: 216 THEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 5e-09
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I++ QLK + VLKGI EG V V+G +GSGK+T + L L + G I+
Sbjct: 25 IDVHQLKKSFGSLE--VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 82
Query: 1276 IDGVDI 1281
IDG+++
Sbjct: 83 IDGINL 88
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 6e-10
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 14/94 (14%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----HTAATLFNECVMAALEKK---TV 772
LSGGQ+QR+ + R + + ++L D+P S +DA + + L K+ T+
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI------SRLHKRLGRTM 187
Query: 773 ILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
I VTH QVE ++ D+I+VL+ G++ Q G EL
Sbjct: 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 6e-10
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
E++ L + Y A +KGI G V ++G G+GKTT +SA+ LV G I+
Sbjct: 8 EVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 1277 DGVDICSMGLK-DLRVKLSII--PQEPTLFRG-SVRTNLDPLGLY---SDDEIWKALEK 1328
+G DI + ++ I P+ +F +V NL +G Y + I + LE
Sbjct: 66 NGQDI--TNKPAHVINRMGIALVPEGRRIFPELTVYENLM-MGAYNRKDKEGIKRDLEW 121
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 8e-10
Identities = 55/229 (24%), Positives = 89/229 (38%), Gaps = 50/229 (21%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTS 667
AI ++G++L + Q + + G+ GAGK++ L AI G + G + G I
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 668 WIQSG--------------SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE- 712
+ G ++ +N++ G R DK L+ + F L E
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYN---RKDKEGIKRDLEWIFSLFPR--LKER 132
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP------------FSAVDAHTAATLFN 760
+ Q G LSGG++Q + + RA+ + + + D+P F + N
Sbjct: 133 LKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK------IN 186
Query: 761 ECVMAALEKKTVILV---THQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ E T++LV L VLE GQI G ELL
Sbjct: 187 Q------EGTTILLVEQNALGA--LKVAHYGYVLETGQIVLEGKASELL 227
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 3e-08
Identities = 93/690 (13%), Positives = 198/690 (28%), Gaps = 195/690 (28%)
Query: 459 TSEI-LNNMKIIKLQSWEEKFKSLIESRREKEF--KWLSEAQLRKAYGTVIYWMSPTIIS 515
T E I L +E+ F + + ++ LS+ ++ S +S
Sbjct: 11 TGEHQYQYKDI--LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM------SKDAVS 62
Query: 516 SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPV--RMIPEALSIMIQVKVSFDRIN-AF 572
+ L TL S E + + + E L RIN F
Sbjct: 63 GTLRL------------------FWTLLSKQEEMVQKFVEEVL-----------RINYKF 93
Query: 573 LLD--HELNNDDVRRISLQKSDRSVKIQEGN--FS----WDPELAIPTLRGVNLDIKWAQ 624
L+ + R ++ N F+ + LR L+++ A+
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQP-YLKLRQALLELRPAK 151
Query: 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIR--DNILYGK 682
+ + G +G+GK+ + + + I W+ + + +L +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQC---KMDFKIF------WLNLKNCNSPETVL--E 200
Query: 683 PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ-RIQLARAVYNDADIY 741
+ K Y +D + + L + Q + R L Y + +
Sbjct: 201 MLQKLLYQ-------IDPNWTSRSDHSSNIK----LRIHSIQAELRRLLKSKPYENCLLV 249
Query: 742 LFDDPFSA--VDAHTAATLFN-ECVMAALEKKTVIL-----VTHQVEFLSEVDRILVLEG 793
L + +A +A FN C K ++ VT + + L
Sbjct: 250 L-LNVQNAKAWNA------FNLSC-------KILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 794 GQITQSGNYQELLL--AGTAFEQLVNAHRDAITGLGPL----------------DNAGQG 835
+T + LLL + L R+ +T P DN
Sbjct: 296 MTLTPD-EVKSLLLKYLDCRPQDL---PREVLTT-NPRRLSIIAESIRDGLATWDNWKHV 350
Query: 836 GAEKVEKGRTA-----RPEEPN------GIYPRKESSEGEISVKGL----TQLTEDEEME 880
+K+ + P E ++P S+ I L + + + M
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--PSA--HIPTILLSLIWFDVIKSDVMV 406
Query: 881 IGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITS--GILI 938
+ ++ L + + + + L +++ + ++
Sbjct: 407 V--------VNKL-HKYSL-VEKQPKESTISIPSIY------LELKVKLENEYALHRSIV 450
Query: 939 GVYAGVS-------TASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFD---- 987
Y + YF S HL + F M+F D
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-------RMVFLDFRFL 503
Query: 988 STPVGRILTRLSSDLSILDF--DIPFSIVFVAASGTELLAIIG-IMTFVTW--QVLVVAI 1042
+ T ++ SIL+ + F ++ + + ++ I+ F+ + L+ +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 1043 FAMVAVRFVQR--------YYIATARELIR 1064
+ ++ + +++ R
Sbjct: 564 YT----DLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 9e-08
Identities = 77/406 (18%), Positives = 130/406 (32%), Gaps = 108/406 (26%)
Query: 1001 DLSILDF-DIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIF----AMVAVRFV---- 1051
+ D D+P SI+ S E+ II V+ + + + +FV
Sbjct: 32 NFDCKDVQDMPKSIL----SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 1052 -QRY-YIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDAS 1109
Y ++ + I + P M Q DR + D
Sbjct: 88 RINYKFLMS-----PIKTEQRQPSMMTRMYIEQ----------RDRLYN--------DNQ 124
Query: 1110 LFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVA----PG-----LVGLSL-SY 1159
+F N + R++ L AL L L P V G + SY
Sbjct: 125 VFAKYN------VSRLQPYLKLR---QAL-LELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 1160 AFTLT-GTQVFLSRW----YCYLANYIISVERIKQFMH-IPPEPPAIVEDKRPPSSWPFK 1213
++F W C ++ E +++ ++ I P + +
Sbjct: 175 KVQCKMDFKIF---WLNLKNCNSPETVL--EMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 1214 GRIELRQL-KIRYRPNAPLVLK-----------GITC----TFSEGTR-VGVVGRTGSGK 1256
+ ELR+L K + N LVL ++C T TR V +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT----TRFKQVTDFLSAAT 285
Query: 1257 TTLISALFRLVEPAGGSILIDGVDICS----MGLKDL-RVKLSIIPQEPTLFRGSVRTNL 1311
TT IS L + + + +DL R L+ P+ ++ S+R L
Sbjct: 286 TTHIS----LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 1312 DPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSG--KLFSA-ALF 1354
+ WK + +L T I S N L+ + K+F ++F
Sbjct: 342 ATW------DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 1e-05
Identities = 78/467 (16%), Positives = 140/467 (29%), Gaps = 140/467 (29%)
Query: 77 GIAYL--GYC---------LWNLIAKNDSSMSWLVSTVRGLIWVSLAISLLVKRSK-WIR 124
I +L C L L+ + D + + S I L + + +R
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-------SSNIKLRIHSIQAELR 235
Query: 125 MLITLWWMSFSLLVL----------ALNIE--ILARTYTINVVYILPLPVNLLLLFSAFR 172
L+ LLVL A N+ IL T V L +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL-----------SAA 284
Query: 173 NFSHFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTFSWIN------PLLSLGYSKPL 226
+H + + +L+ + + LL K +++ P L + P
Sbjct: 285 TTTHISL-DHHSMTLTPD------EVK----SLLLK----YLDCRPQDLPREVLTTN-PR 328
Query: 227 ALEDIPSLVPEDEASFAYQKFAYAWDSL--VRENNSNN-NGNLVRKVITNVYLKENIF-- 281
L I + + A++ K D L + E++ N RK ++ + ++F
Sbjct: 329 RLSIIAESIRDGLATWDNWKH-VNCDKLTTIIESSLNVLEPAEYRK----MFDRLSVFPP 383
Query: 282 ---I---AICALLRTIAVVVGPLLLYAFVNYS--NRGEENLQEGLSIVGCLIITKV-VES 332
I + + + +++ YS + + +SI + KV +E+
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST--ISIPSIYLELKVKLEN 441
Query: 333 FTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP 392
H R +V Y + S I Y+ D Y F
Sbjct: 442 EYALH-----RS---------IVDHYNIP-------KTFDSDDLIPPYL--DQY----F- 473
Query: 393 FWF---HLT-------WSLALQLFLAIGVLFGVVGLGA---LPGLVLFLICGLLNVPFAK 439
+ HL +L +FL F L +LN
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFR--F----LEQKIRHDSTAWNASGSILNT---- 523
Query: 440 ILQ--KCQSEFMIAQDERL-RSTSEILNNMKIIKLQSWEEKFKSLIE 483
LQ K ++ D + R + IL+ + I+ K+ L+
Sbjct: 524 -LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 698 LDKDINNFDHGDLTEIGQRGLN-LSGGQKQRIQLA------RAVYNDADIYLFDDPFSAV 750
+ + N + E +R L LSGG++ + LA + + + + D+P +
Sbjct: 226 VRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYL 285
Query: 751 DAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792
D L + VILV+H E D ++ +
Sbjct: 286 DEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 327
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 2e-05
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 12/52 (23%)
Query: 450 IAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR----REKEFKWLSEAQ 497
IAQ +RL E ++ W E+ + ++ + E +W +A+
Sbjct: 74 IAQADRLTQEPE--------SIRKWREEQRKRLQELDAASKVMEQEWREKAK 117
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 5e-05
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 16/98 (16%)
Query: 713 IGQRGLNLSGGQKQRIQLA------RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+ LSGG++ + LA + + + + D+P +D L +M
Sbjct: 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT--IMER 108
Query: 767 LEKK--TVILVTHQVEFLSEVDRILVLE------GGQI 796
KK VILV+H E D ++ + ++
Sbjct: 109 YLKKIPQVILVSHDEELKDAADHVIRISLENGSSKVEV 146
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LSGGQ + +++ RA+ + + + D+P + V A +FN + + T +++ H+
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
Query: 779 VEFLSEV-DRILVLEGGQI 796
++ + D + V+ GQI
Sbjct: 213 LDIVLNYIDHLYVMFNGQI 231
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1354 | ||||
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-65 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-24 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-59 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-34 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-56 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-29 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-53 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 9e-30 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-50 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-28 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 7e-50 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 7e-25 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-29 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-14 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-29 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-16 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-28 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-09 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-12 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-27 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-16 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-26 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 8e-16 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 6e-26 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-12 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-26 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-10 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-26 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-13 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-25 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-12 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-25 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-12 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-15 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 7e-24 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-13 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-21 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-09 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 6e-16 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-09 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-08 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 3e-07 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 7e-07 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 8e-05 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 0.003 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.001 | |
| d2qm8a1 | 323 | c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo | 0.002 |
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 220 bits (561), Expect = 4e-65
Identities = 95/262 (36%), Positives = 143/262 (54%), Gaps = 7/262 (2%)
Query: 558 IMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVN 617
IM V ++ LL+ ++ R+ S +++ S + P L+ +N
Sbjct: 4 IMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFS----HLCLVGN---PVLKNIN 56
Query: 618 LDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDN 677
L+I+ + +A+ GS G+GK+SLL ILGE+ G + G +++ SQ SWI G+I++N
Sbjct: 57 LNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKEN 116
Query: 678 ILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737
I++G D+ RY +KAC L +DI F D T +G+ G+ LSGGQ+ RI LARAVY D
Sbjct: 117 IIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD 176
Query: 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQIT 797
AD+YL D PF +D T +F CV + KT ILVT ++E L + D+IL+L G
Sbjct: 177 ADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSY 236
Query: 798 QSGNYQELLLAGTAFEQLVNAH 819
G + EL F + +
Sbjct: 237 FYGTFSELQSLRPDFSSKLMGY 258
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 103 bits (258), Expect = 1e-24
Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 25/168 (14%)
Query: 1182 ISVERI-----KQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGI 1236
I +E + + F + + D+ + + L + P VLK I
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDR---KHSSDENNVSFSHLCLVGNP----VLKNI 55
Query: 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
+G + + G TGSGKT+L+ + +E + G I G ++S
Sbjct: 56 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFC 102
Query: 1297 PQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS 1344
Q + G+++ N+ Y + ++ CQL+ I+ + ++
Sbjct: 103 SQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNT 150
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 202 bits (516), Expect = 2e-59
Identities = 69/245 (28%), Positives = 123/245 (50%), Gaps = 16/245 (6%)
Query: 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI 647
++ + I +F + + P L+ +NL I+ + +A G G GKS+L+ I
Sbjct: 10 IEIKQGRIDIDHVSFQY-NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 648 PKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAI 693
SG + + G I V Q + + S ++++NIL G+P +A
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 694 KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753
K I N G TE+G+RG+ LSGGQKQR+ +AR N+ I + D+ SA+D
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 754 TAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813
+ + + E + + +T ++V H++ ++ D+I+V+E G I ++G ++EL+ A+E
Sbjct: 189 SESIIQ-EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYE 247
Query: 814 QLVNA 818
L +
Sbjct: 248 HLYSI 252
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 131 bits (330), Expect = 1e-34
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
+GRI++ + +Y N +LK I + +G V VG +G GK+TLI+ + R + G
Sbjct: 14 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 73
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL-DPLGLYSDDEIWKALEKCQL 1331
ILIDG +I LR ++ ++ Q+ LF +V+ N+ +D+E+ +A +
Sbjct: 74 QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANA 133
Query: 1332 KTTISSLPNKLDS 1344
I +LP D+
Sbjct: 134 HDFIMNLPQGYDT 146
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 195 bits (496), Expect = 1e-56
Identities = 63/246 (25%), Positives = 120/246 (48%), Gaps = 17/246 (6%)
Query: 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI 647
+ ++ ++ + F++ +P LR +NL I + +A+ G G+GKS++ I
Sbjct: 7 IDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 65
Query: 648 PKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKA 692
G + + G +A VSQ + + ++ +NI Y + + + ++A
Sbjct: 66 DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA 125
Query: 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
+ IN D+G T IG+ G+ LSGGQ+QRI +ARA+ D+ I + D+ SA+D
Sbjct: 126 ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 185
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812
+ + + + +T +++ H++ + + D I+V+E G I + G + ELL +
Sbjct: 186 ESERAIQ-AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVY 244
Query: 813 EQLVNA 818
QL
Sbjct: 245 AQLHKM 250
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 116 bits (293), Expect = 1e-29
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
G +E R + Y L+ I G V +VGR+GSGK+T+ S + R + G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTN--LDPLGLYSDDEIWKALEKCQ 1330
IL+DG D+ L LR +++++ Q LF +V N YS ++I +A
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
Query: 1331 LKTTISSLPNKLDS 1344
I+ + N LD+
Sbjct: 131 AMDFINKMDNGLDT 144
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 185 bits (470), Expect = 2e-53
Identities = 60/241 (24%), Positives = 109/241 (45%), Gaps = 16/241 (6%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
V+ Q+ +F++ + L+G+ ++ + A+ G G+GKS++ + G
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70
Query: 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYD--KAIKACAL 698
+ L G +A V Q + S+++NI YG + A
Sbjct: 71 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
I+ G TE+ + G LSGGQ+Q + LARA+ + + DD SA+DA++ +
Sbjct: 131 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 190
Query: 759 FNECVMAALEK-KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
+ ++V+L+T + + + D IL LEGG I + G +Q+L+ + +V
Sbjct: 191 EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQ 250
Query: 818 A 818
A
Sbjct: 251 A 251
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 117 bits (294), Expect = 9e-30
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 5/139 (3%)
Query: 1210 WPFKGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV 1267
+G ++ + + Y RP+ VL+G+T T G +VG GSGK+T+ + L L
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVL-VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64
Query: 1268 EPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL--DPLGLYSDDEIWKA 1325
+P GG +L+DG + + L +++ + QEP +F S++ N+ + +EI A
Sbjct: 65 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAA 124
Query: 1326 LEKCQLKTTISSLPNKLDS 1344
K + IS LP D+
Sbjct: 125 AVKSGAHSFISGLPQGYDT 143
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 175 bits (444), Expect = 6e-50
Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 17/242 (7%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
+ + F + P+ L +NL IK + I + G G+GKS+L I +G V
Sbjct: 2 ITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDK 700
+ G + V Q + + + SI DNI P M + A K
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
I+ G T +G++G LSGGQ+QRI +ARA+ N+ I +FD+ SA+D + +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 761 ECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA-GTAFEQLVNAH 819
+ + +TVI++ H++ + DRI+V+E G+I + G ++ELL + + L
Sbjct: 181 N-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Query: 820 RD 821
D
Sbjct: 240 SD 241
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 112 bits (282), Expect = 2e-28
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I R ++ RY+P++P++L I + +G +G+VGR+GSGK+TL + R P G +L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL-DPLGLYSDDEIWKALEKCQLKTT 1334
IDG D+ LR ++ ++ Q+ L S+ N+ S +++ A +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1335 ISSLPNKLDS 1344
IS L ++
Sbjct: 122 ISELREGYNT 131
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 175 bits (444), Expect = 7e-50
Identities = 57/232 (24%), Positives = 114/232 (49%), Gaps = 18/232 (7%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658
+F++D LR ++ + + IA G G GKS++ + +G + + G
Sbjct: 8 DFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65
Query: 659 -----------SIAYVSQTSWIQSGSIRDNILYG--KPMDKARYDKAIKACALDKDINNF 705
I +VSQ S I +G+IR+N+ YG + + + N
Sbjct: 66 IDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
TE+G+RG+ +SGGQ+QR+ +ARA + I + D+ +++D+ + + + + +
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK-ALDS 184
Query: 766 ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
++ +T +++ H++ + + D+I +E GQIT SG + EL+ + + V+
Sbjct: 185 LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 103 bits (257), Expect = 7e-25
Identities = 33/131 (25%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ R + Y ++ +L+ I+ + + G +G GK+T+ S L R +P G I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD--PLGLYSDDEIWKALEKCQLKT 1333
IDG I ++ L++ R ++ + Q+ + G++R NL G Y+D+++W+ L+ ++
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1334 TISSLPNKLDS 1344
+ ++P++L++
Sbjct: 121 FVENMPDQLNT 131
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 116 bits (292), Expect = 1e-29
Identities = 55/215 (25%), Positives = 93/215 (43%), Gaps = 32/215 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661
+ +NL IK + + + G G GK++ L I G G + +I+
Sbjct: 22 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 81
Query: 662 YVSQTSWIQSG-SIRDNI-----LYGKPMDKA--RYDKAIKACALDKDINNFDHGDLTEI 713
V Q+ + ++ +NI + P D+ R A + +++ +N +
Sbjct: 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------ 135
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTV 772
LSGGQ+QR+ +ARA+ + D+ L D+P S +DA + E + K T
Sbjct: 136 -----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 190
Query: 773 ILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
I VTH + DRI V+ GQ+ Q G+ E+
Sbjct: 191 IYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 225
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 72.9 bits (179), Expect = 1e-14
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
++L L R+ + + T +G + ++G +G GKTT + + L EP G I
Sbjct: 7 VKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLD-PLGLY--SDDEIWK----ALE 1327
D+ L +S++ Q ++ +V N+ PL + DEI K A E
Sbjct: 65 FGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE 122
Query: 1328 KCQLKTTISSLPNKL 1342
Q++ ++ P +L
Sbjct: 123 LLQIEELLNRYPAQL 137
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 114 bits (286), Expect = 6e-29
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 23/217 (10%)
Query: 605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658
E I L+ VNL+IK + +++ G G+GKS++L I G V +
Sbjct: 13 MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDL 72
Query: 659 -----------SIAYVSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFD 706
I +V Q + I + +N+ P+ + +
Sbjct: 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL--PLIFKYRGAMSGEERRKRALECLK 130
Query: 707 HGDLTE--IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV- 763
+L E + LSGGQ+QR+ +ARA+ N+ I L D P A+D+ T +
Sbjct: 131 MAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 764 MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
+ + KTV++VTH + +RI+ L+ G++ +
Sbjct: 191 LNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 76.8 bits (189), Expect = 4e-16
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 1216 IELRQLKIRYRPNAPL--VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
I+L+ + Y+ + LK + EG V ++G +GSGK+T+++ + L +P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1274 ILIDGVDICSMGLKDL----RVKLSIIPQEPTLF-RGSVRTNL 1311
+ ID + + +L R K+ + Q+ L + N+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENV 104
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 113 bits (285), Expect = 1e-28
Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 20/210 (9%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV---------------NLY 657
++G++L + Q + + G+ GAGK++ L AI G + G + N
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
G ++ +N++ G K + + + Q G
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE----RLKQLG 137
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
LSGG++Q + + RA+ + + + D+P + + +F E T++LV
Sbjct: 138 GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197
Query: 778 QVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+V VLE GQI G ELL
Sbjct: 198 NALGALKVAHYGYVLETGQIVLEGKASELL 227
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 57.6 bits (139), Expect = 2e-09
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E++ L + Y +KGI G V ++G G+GKTT +SA+ LV G I+
Sbjct: 7 LEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 1276 IDGVDICSMGLKDLRVK-LSIIPQEPTLF-RGSVRTNL--DPLGLYSDDEIWKALEKCQL 1331
+G DI + + ++++P+ +F +V NL + I + LE +
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW--I 122
Query: 1332 KTTISSLPNKLDSSGKLFS 1350
+ L +L G S
Sbjct: 123 FSLFPRLKERLKQLGGTLS 141
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 112 bits (281), Expect = 5e-28
Identities = 48/231 (20%), Positives = 99/231 (42%), Gaps = 25/231 (10%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L GV++ + + G G+GKS+L+ I G + G V
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 659 SIAYVSQT-SWIQSGSIRDNILYG------KPMDKARYDKAI--KACALDKDINNFDHGD 709
I QT ++ ++ +N+L G P++ Y K I + ++K +
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 710 LTEIG-QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
L+ + ++ LSGGQ + +++ RA+ + + + D+P + V A +FN + +
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 769 KKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
T +++ H+++ + D + V+ GQI G +E + + ++V
Sbjct: 200 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEI 250
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 67.3 bits (164), Expect = 1e-12
Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ + + L G++ + ++G ++G GSGK+TLI+ + ++ G +
Sbjct: 5 LRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 1276 IDGVDICSMGLKDL-RVKLSIIPQEPTLF-RGSVRTNL 1311
+ DI + +L + Q P +V NL
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENL 100
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 109 bits (273), Expect = 4e-27
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 37/228 (16%)
Query: 605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658
I L V+L + Q V G+ GAGKS+L+ + G+V + G
Sbjct: 13 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL 72
Query: 659 ----------SIAYVSQT-SWIQSGSIRDNI-----LYGKPMD--KARYDKAIKACALDK 700
I + Q + + S ++ N+ L P D K R + + L
Sbjct: 73 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD 132
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
+++ NLSGGQKQR+ +ARA+ ++ + L D+ SA+D T ++
Sbjct: 133 KHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 761 ECV-MAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+ T++L+TH+++ + + D + V+ G++ + E+
Sbjct: 182 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 78.0 bits (192), Expect = 2e-16
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 14/144 (9%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
I+L + + + L ++ G GV+G +G+GK+TLI + L P GS
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1274 ILIDGVDICSMGLKD---LRVKLSIIPQEPTLF-RGSVRTNLD-PLGLY--SDDEIWK-- 1324
+L+DG ++ ++ + R ++ +I Q L +V N+ PL L DE+ +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1325 --ALEKCQLKTTISSLPNKLDSSG 1346
L L S P+ L S G
Sbjct: 122 TELLSLVGLGDKHDSYPSNL-SGG 144
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 108 bits (271), Expect = 1e-26
Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 46/230 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L+GV+L + I++ GS G+GKS+ L I G + + G
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 659 ------------SIAYVSQ-TSWIQSGSIRDNILYG--------KPMDKARYDKAIKACA 697
+ V Q + ++ +N++ K + R K +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVG 137
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
+D+ + ++LSGGQ+QR+ +ARA+ + D+ LFD+P SA+D
Sbjct: 138 IDERAQG----------KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 187
Query: 758 LFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+ A E KT+++VTH++ F V ++ L G+I + G+ +++
Sbjct: 188 VLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 76.8 bits (189), Expect = 8e-16
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 15/102 (14%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
++ + L RY + VLKG++ G + ++G +GSGK+T + + L +P+ G+I
Sbjct: 2 KLHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 1275 LIDGVDICSMGLKD-------------LRVKLSIIPQEPTLF 1303
+++G +I + KD LR +L+++ Q L+
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW 101
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 105 bits (264), Expect = 6e-26
Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 32/215 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661
+ +NLDI + + G G GKS+LL I G SG + + +
Sbjct: 16 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVG 75
Query: 662 YVSQTSWIQSG-SIRDNILYG-------KPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
V Q+ + S+ +N+ +G K + R ++ + L ++
Sbjct: 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK------ 129
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTV 772
LSGGQ+QR+ + R + + ++L D+P S +DA + E + +T+
Sbjct: 130 -----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 184
Query: 773 ILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
I VTH + D+I+VL+ G++ Q G EL
Sbjct: 185 IYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 219
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 65.7 bits (160), Expect = 3e-12
Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 12/135 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
++L+ + + +V K I EG V VG +G GK+TL+ + L G +
Sbjct: 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY--------SDDEIWKALE 1327
I + + ++ Q L+ GL + + + E
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 116
Query: 1328 KCQLKTTISSLPNKL 1342
QL + P L
Sbjct: 117 VLQLAHLLDRKPKAL 131
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 105 bits (264), Expect = 6e-26
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 38/221 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
+R ++L++K + + + G G GK++ L I G G + +
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 659 ---SIAYVSQ-TSWIQSGSIRDNI-----LYGKPMD--KARYDKAIKACALDKDINNFDH 707
IA V Q + ++ DNI L P R + + L + +N
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAA 766
LSGGQ+QR+ L RA+ ++L D+P S +DA + E +
Sbjct: 139 -----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187
Query: 767 LEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T I VTH + DRI V+ G + Q G+ E+
Sbjct: 188 QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 61.1 bits (148), Expect = 1e-10
Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ L + + ++ ++ +G + ++G +G GKTT + + L EP+ G I
Sbjct: 4 VRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 1276 IDGVDICSMGLKDLR----VKLSIIPQEPTLF 1303
I + ++++ Q L+
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 105 bits (262), Expect = 9e-26
Identities = 42/208 (20%), Positives = 89/208 (42%), Gaps = 18/208 (8%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------I 660
L+G++ +I+ + + G GAGK++ L I I SG V ++G I
Sbjct: 18 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77
Query: 661 AYVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
+Y+ + + + + + + + + +I +I R
Sbjct: 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE----KIKDRVST 133
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779
S G +++ +ARA+ + + + D+P S +D A + A+ E T+++ +H +
Sbjct: 134 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 193
Query: 780 EFLSEV-DRILVLEGGQITQSGNYQELL 806
+ + DRI ++ G I ++G +EL
Sbjct: 194 LEVEFLCDRIALIHNGTIVETGTVEELK 221
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 68.1 bits (166), Expect = 5e-13
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
G + ++ L+ R +LKGI+ EG G++G G+GKTT + + L++P+ G
Sbjct: 1 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLK 1332
+ + G ++ ++R +S +P+E +R L + + + E +
Sbjct: 59 VTVFGKNVVEE-PHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA 117
Query: 1333 TTISSLPNKLDSSGKLFSA 1351
T I+ L K+ +S
Sbjct: 118 TEIAGLGEKIKDRVSTYSK 136
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 102 bits (256), Expect = 6e-25
Identities = 44/218 (20%), Positives = 85/218 (38%), Gaps = 36/218 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659
L ++ +++ + + + G GAGKS+LL + G G++ G
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALH 73
Query: 660 IAYVSQTSWIQSG-SIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
AY+SQ + + + + A ALD ++G+
Sbjct: 74 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-----------DKLGRS 122
Query: 717 GLNLSGGQKQRIQLARAVYN-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
LSGG+ QR++LA V + L D+P +++D + L +
Sbjct: 123 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG 182
Query: 770 KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+++ +H + R +L+GG++ SG +E+L
Sbjct: 183 LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 220
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 66.5 bits (162), Expect = 1e-12
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 10/130 (7%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
++L+ + R L ++ G + +VG G+GK+TL++ + + GSI
Sbjct: 4 MQLQDVAESTR------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQ 56
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTL-FRGSVRTNL-DPLGLYSDDEIW-KALEKCQLK 1332
G + + L + + + Q+ T F V L + E+ L
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD 116
Query: 1333 TTISSLPNKL 1342
+ N+L
Sbjct: 117 DKLGRSTNQL 126
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 102 bits (255), Expect = 7e-25
Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 21/208 (10%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661
L ++L ++ + + G GAGK+ L I G SG + L G IA
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 662 YVSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720
+V Q S +++ N+ +G M K + K + A D I + + L L
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-------RNPLTL 128
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTHQV 779
SGG++QR+ LARA+ + I L D+P SA+D T + K TV+ +TH
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188
Query: 780 EFLSEV-DRILVLEGGQITQSGNYQELL 806
+ DRI V+ G++ Q G +E+
Sbjct: 189 TEARIMADRIAVVMDGKLIQVGKPEEIF 216
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 66.2 bits (161), Expect = 2e-12
Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 10/132 (7%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+ L +++ L ++ G ++G TG+GKT + + P G IL
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF-----RGSVRTNLDPLGLYSDDEIWKALEKCQ 1330
+DG L + ++ + Q +LF + ++ + + + +
Sbjct: 59 LDGK--DVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 1331 LKTTISSLPNKL 1342
++ + P L
Sbjct: 117 IEHLLDRNPLTL 128
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 101 bits (253), Expect = 7e-25
Identities = 41/191 (21%), Positives = 79/191 (41%), Gaps = 18/191 (9%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAY 662
P L + + I+ + G G GK++LL I + + G + G I +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 74
Query: 663 VSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721
+ + + S+ D + + + +K AL+ ++ ++ ++ LS
Sbjct: 75 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES-------VEVLDLKKKLGELS 127
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781
G +R+QLA + +A+IY+ DDP A+D + + + EK VI+ + +
Sbjct: 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-- 185
Query: 782 LSEVDRILVLE 792
LS D L
Sbjct: 186 LSYCDVNENLH 196
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 74.2 bits (182), Expect = 2e-15
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 1215 RIELRQLKIRY-RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
++E+R L + Y +P VL+ IT T +G V G G GKTTL+ + ++P G
Sbjct: 2 KLEIRDLSVGYDKP----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 57
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL-YSDDEIWKALEKCQL 1331
I+ +GV I + K + II ++ G+ + +EI ALE ++
Sbjct: 58 IIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV 116
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 99.8 bits (248), Expect = 7e-24
Identities = 52/216 (24%), Positives = 90/216 (41%), Gaps = 29/216 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L VN++I+ ++ + G GAGK++ + I G +G +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 659 --SIAYVSQ----TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
I V Q + + L M K K ++ A DI++ + E
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE 140
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKT 771
LSG Q+QR+ LARA+ D + L D+PFS +DA + + + T
Sbjct: 141 -------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 772 VILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+++V+H + + DR+ VL G++ Q G ++L
Sbjct: 194 LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 68.6 bits (167), Expect = 3e-13
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
RI ++ + ++ + L + G R G++G +G+GKTT + + L P+ G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1275 LIDGVDICSMGLKDLRV---KLSIIPQEPTLF 1303
D + S G + K+ ++ Q L+
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 92.0 bits (228), Expect = 3e-21
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 21/206 (10%)
Query: 616 VNLDIKWAQKI-AVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663
+N+D + + + G GAGKS L I G + G V L G I +V
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 664 SQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722
Q + S+ NI YG + ++ + + + + D ++ LSG
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERV-ERDRRVREMAEKLGIAHLLD-----RKPARLSG 129
Query: 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTHQVEF 781
G++QR+ LARA+ + L D+P SAVD T L E + ++ VTH +
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 782 LSEV-DRILVLEGGQITQSGNYQELL 806
+ + D + V+ G+I + G +EL
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKELF 215
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 58.1 bits (140), Expect = 1e-09
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301
++G TG+GK+ + + +V+P G + ++G DI L R + +PQ+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGFVPQDYA 80
Query: 1302 LFR 1304
LF
Sbjct: 81 LFP 83
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 75.0 bits (183), Expect = 6e-16
Identities = 23/196 (11%), Positives = 53/196 (27%), Gaps = 24/196 (12%)
Query: 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPM 684
KI + G G GK++L+ I+ + K + +RD +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEE---------------VRDPETKKRTG 46
Query: 685 DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
+ + K K + + + A + + + D
Sbjct: 47 FRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIID 106
Query: 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ--SGNY 802
+ ++ + + V+ + V I L G + + N
Sbjct: 107 EI-GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENR 165
Query: 803 QELLLAGTAFEQLVNA 818
+L E +++
Sbjct: 166 DVIL------EDILSL 175
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 58.1 bits (139), Expect = 5e-10
Identities = 9/86 (10%), Positives = 26/86 (30%)
Query: 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304
++ + G G GKTTL+ + + + V + ++ ++
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 1305 GSVRTNLDPLGLYSDDEIWKALEKCQ 1330
+ + + ++ L
Sbjct: 62 KFFTSKKLVGSYGVNVQYFEELAIPI 87
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 51.5 bits (121), Expect = 3e-07
Identities = 29/300 (9%), Positives = 85/300 (28%), Gaps = 1/300 (0%)
Query: 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFT 334
+ I I +L + LL ++ + + + + + +
Sbjct: 14 FKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITS 73
Query: 335 QRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW 394
+ S SG + + + K+ + +
Sbjct: 74 YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGA 133
Query: 395 FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDE 454
+ ++F ++ +VL I + +K + +
Sbjct: 134 LITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQ 193
Query: 455 RLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA-YGTVIYWMSPTI 513
S ++L K + + +E + K + + +I ++
Sbjct: 194 VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLA 253
Query: 514 ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573
++ V++ + L A TI V +++ ++ P++ + + + + + A L
Sbjct: 254 LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL 313
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 7e-07
Identities = 12/85 (14%), Positives = 25/85 (29%)
Query: 1246 VGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG 1305
V + G G GKTTLI +++ +G + + G + + + +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 1306 SVRTNLDPLGLYSDDEIWKALEKCQ 1330
+ L +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFE 88
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 44.1 bits (102), Expect = 8e-05
Identities = 47/307 (15%), Positives = 105/307 (34%), Gaps = 8/307 (2%)
Query: 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNY------SNRGEENLQEGLSIVGCLIITK 328
Y I +++ ++ PLL+ ++ E+ ++I L I
Sbjct: 12 YKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFV 71
Query: 329 VVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAY-R 387
+V + + ++ + ++ + +Y LS+ + G++++ + D
Sbjct: 72 IVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQT 131
Query: 388 MGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSE 447
W + + +A+ ++F + L L +F L F L+K E
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 448 FMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIY 507
A E E + + ++K + E+ + + + AY
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 508 WMSPTIISS-VIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSF 566
I VI +G L S + T+ + L + P+R + + + + Q S
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASM 311
Query: 567 DRINAFL 573
DR+ +
Sbjct: 312 DRVFQLI 318
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 39.1 bits (89), Expect = 0.003
Identities = 43/309 (13%), Positives = 96/309 (31%), Gaps = 13/309 (4%)
Query: 901 LLCLGVLAQSGFVGLQAAATYWLAYAI------------QIPKITSGILIGVYAGVSTAS 948
+ ++ G+ + YAI + + +
Sbjct: 15 RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVR 74
Query: 949 AVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFD 1008
+ R + A K N + F+ + VG++++R+ +D+
Sbjct: 75 PPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDF 134
Query: 1009 IPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGT 1068
I ++ + ++ + IM F+ ++ + A+F + R+L R
Sbjct: 135 ILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQ 194
Query: 1069 TKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFH-TNGVMEWLILRVEA 1127
A V + E QG+ +++F + D +N+ K + T
Sbjct: 195 ALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTV 254
Query: 1128 LQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERI 1187
+ + L G + G + + Y L G L + L S++R+
Sbjct: 255 TDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRV 314
Query: 1188 KQFMHIPPE 1196
Q + +
Sbjct: 315 FQLIDEDYD 323
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.5 bits (93), Expect = 0.001
Identities = 7/62 (11%), Positives = 22/62 (35%)
Query: 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDR 787
+ A Y + ++ D+ +A+D + I+++ + + D
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDA 404
Query: 788 IL 789
++
Sbjct: 405 LV 406
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Score = 39.9 bits (92), Expect = 0.002
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM 1284
RVG+ G G GK+T I AL L+ AG + + VD S
Sbjct: 53 RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSST 92
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1354 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.98 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.97 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.97 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.97 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.96 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.96 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.96 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.95 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.93 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.92 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.9 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.86 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.83 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.83 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.83 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.83 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.82 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.82 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.8 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.78 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.77 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.77 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.75 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.72 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.66 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.59 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.56 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.3 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.14 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.6 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.45 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.21 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.76 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.84 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.67 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.35 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 95.94 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.65 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.61 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.53 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.52 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.36 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.33 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.3 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.23 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.15 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.85 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.83 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 94.66 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.49 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 94.42 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.34 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.29 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.21 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.19 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.99 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 93.95 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.86 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 93.86 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.85 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.83 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.8 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.79 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.75 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.74 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 93.74 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 93.7 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.64 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 93.61 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.61 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.52 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.46 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.43 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.34 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.33 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.29 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.21 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.17 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.06 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.0 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.94 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.87 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.65 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.63 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 92.57 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.54 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 92.53 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 92.39 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 92.36 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.29 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.28 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.24 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 92.18 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.17 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.1 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.1 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.05 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 91.97 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.71 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.57 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.57 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.54 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.53 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 91.49 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.37 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 91.24 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 91.23 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 91.11 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.98 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 90.93 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 90.92 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 90.91 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 90.9 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 90.89 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 90.88 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 90.82 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 90.81 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.71 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 90.67 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 90.67 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 90.56 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 90.56 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.48 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 90.24 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.21 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 90.13 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 90.05 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 89.91 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.9 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.89 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 89.87 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 89.86 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 89.78 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 89.77 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 89.76 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 89.72 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.71 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.64 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 89.6 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 89.57 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 89.5 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.43 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.32 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 89.25 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 89.21 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.18 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.18 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.07 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 88.96 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 88.94 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 88.94 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 88.93 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.91 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.86 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 88.81 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.69 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 88.69 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 88.62 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 88.62 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 88.54 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.45 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.36 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 88.29 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.22 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.2 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 88.18 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.1 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 87.93 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 87.87 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.86 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 87.76 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 87.64 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 87.64 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 87.61 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 87.48 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 87.35 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 87.33 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 87.32 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 87.26 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 87.1 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 87.08 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 87.01 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 86.99 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 86.97 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 86.87 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 86.82 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 86.76 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 86.71 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.67 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 86.65 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 86.65 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 86.62 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 86.6 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 86.51 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.48 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 86.44 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 86.43 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 86.35 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 86.28 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 86.26 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 86.25 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 86.2 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 86.11 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 85.96 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 85.96 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 85.93 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 85.87 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 85.81 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.79 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 85.76 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.76 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 85.76 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.7 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 85.67 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 85.66 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 85.48 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 85.46 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 85.44 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 85.41 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 85.38 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 85.34 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 85.3 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 85.28 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 85.17 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 85.16 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.14 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.93 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 84.9 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 84.62 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 84.57 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 84.56 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 84.55 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 84.43 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 84.36 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 84.35 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 84.32 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 84.3 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 84.28 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 84.26 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 84.22 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 84.08 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 84.08 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 84.06 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 83.98 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 83.97 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 83.9 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 83.85 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 83.85 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 83.84 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 83.8 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 83.78 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.74 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 83.7 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 83.69 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 83.58 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 83.56 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 83.55 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 83.53 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 83.41 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 83.31 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 83.29 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 83.28 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 83.16 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 83.07 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 83.01 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 82.98 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 82.91 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 82.79 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 82.71 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 82.59 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 82.48 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 82.47 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 82.46 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 82.38 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 82.29 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 82.27 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 82.23 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 82.19 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 82.18 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 81.94 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 81.67 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 81.54 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 81.26 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 81.2 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 81.14 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 81.06 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 81.02 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 81.01 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 80.97 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 80.91 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 80.9 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 80.8 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 80.61 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 80.59 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 80.1 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 80.1 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=418.36 Aligned_cols=228 Identities=30% Similarity=0.510 Sum_probs=212.6
Q ss_pred CCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC----------
Q ss_conf 5899848998437972799988731126688508808999879998877899888298658873899919----------
Q 000680 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1354)
Q Consensus 589 ~~~~~~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g---------- 658 (1354)
+..++.|+++|++|+|+.+ ..++|+|+||++++|++++|+|++|||||||+++|+|.+++.+|+|.++|
T Consensus 11 ~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 11 EIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 89 (255)
T ss_dssp CCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred CCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHH
T ss_conf 7778879999889995999-976064438998399899998899980999999997127863000153998753078888
Q ss_pred ---EEEEEECCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf ---1999807887898758899723999-998999999999510798821899996312688887794899999999998
Q 000680 659 ---SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 659 ---~iayv~Q~pwi~~~TireNIlfg~~-~d~~~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAv 734 (1354)
.++||+|+|+++++||+|||.||.+ .++++..++++.|++.++++.||+|++|.+||+|.+|||||||||+||||+
T Consensus 90 lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal 169 (255)
T d2hyda1 90 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 169 (255)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred HHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 63414565101568998799998515867999999999999697999973624201033388898499999999999998
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHH
Q ss_conf 04998999828788869999999999999781499589997489431520297999939848893386899861824899
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814 (1354)
Q Consensus 735 y~~~di~lLDdp~salD~~~~~~if~~~i~~~l~~kT~Ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~el~~~~~~~~~ 814 (1354)
|++|+|++||||+|+||+++.+.+++ .+....+++|+|+|||+++.+..||+|++|++|+|++.|+++||+++++.|.+
T Consensus 170 ~~~p~ililDEpts~LD~~t~~~i~~-~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~ 248 (255)
T d2hyda1 170 LNNPPILILDEATSALDLESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEH 248 (255)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHH
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHH
T ss_conf 55998999837654479779999999-99987538889999689999985999999989999998899999868849999
Q ss_pred HHHH
Q ss_conf 9997
Q 000680 815 LVNA 818 (1354)
Q Consensus 815 l~~~ 818 (1354)
+.+.
T Consensus 249 l~~~ 252 (255)
T d2hyda1 249 LYSI 252 (255)
T ss_dssp HHTT
T ss_pred HHHH
T ss_conf 9997
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=414.19 Aligned_cols=224 Identities=30% Similarity=0.469 Sum_probs=209.5
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------EE
Q ss_conf 48998437972799988731126688508808999879998877899888298658873899919-------------19
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g-------------~i 660 (1354)
.|+|+|++|+|+++ .+++|+|+||++++|+.++|+|++|||||||+++|+|.+++.+|+|.++| ++
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEEECCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99807887898758899723999-99899999999951079882189999631268888779489999999999804998
Q 000680 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 661 ayv~Q~pwi~~~TireNIlfg~~-~d~~~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAvy~~~d 739 (1354)
+||+|+|+++++||+|||.++.+ .+.+++.++++.|.+.++++.+|+|+.|.+|++|.+|||||||||+||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHHHH
Q ss_conf 999828788869999999999999781499589997489431520297999939848893386899861-8248999997
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA-GTAFEQLVNA 818 (1354)
Q Consensus 740 i~lLDdp~salD~~~~~~if~~~i~~~l~~kT~Ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~el~~~-~~~~~~l~~~ 818 (1354)
|++||||||+||+.+++.+++. +....+++|+|+|||+++.+..||+|++|++|+|++.|+|+|++++ ++.|.++.+.
T Consensus 160 ililDEpts~LD~~~~~~i~~~-l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHH-HHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHH-HHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 3556477655598999999999-999858998999978899998499999998999999889999982998789999998
Q ss_pred H
Q ss_conf 2
Q 000680 819 H 819 (1354)
Q Consensus 819 ~ 819 (1354)
+
T Consensus 239 Q 239 (241)
T d2pmka1 239 Q 239 (241)
T ss_dssp H
T ss_pred H
T ss_conf 1
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=409.13 Aligned_cols=227 Identities=28% Similarity=0.465 Sum_probs=212.9
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------
Q ss_conf 99848998437972799988731126688508808999879998877899888298658873899919------------
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1354)
Q Consensus 591 ~~~~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g------------ 658 (1354)
..+.|+++|++|+|+.. +.++|+|+||++++|+.++|+||+|||||||+++|+|.++|.+|+|.++|
T Consensus 10 ~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 88 (253)
T ss_dssp CCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHH
T ss_conf 83079999889992999-97635332899859999999999998599999998621688846898788012111066542
Q ss_pred -EEEEEECCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf -199980788789875889972399--99989999999995107988218999963126888877948999999999980
Q 000680 659 -SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 659 -~iayv~Q~pwi~~~TireNIlfg~--~~d~~~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAvy 735 (1354)
.++||+|+|+++++|+++|+.+|. .++.+++.++++.|++.++++.+|+|.+|.+|++|.+|||||||||+||||++
T Consensus 89 ~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred HEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 06879950254478620243320572208999999999998179999735544101434888984999999999999995
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
Q ss_conf 49989998287888699999999999997814995899974894315202979999398488933868998618248999
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1354)
Q Consensus 736 ~~~di~lLDdp~salD~~~~~~if~~~i~~~l~~kT~Ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~el~~~~~~~~~l 815 (1354)
++|+|++||||+|+||+.+.+.|++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++||+++++.|.++
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l 247 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 247 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHH-HHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
T ss_conf 4998899516444589889999999-998752278899998879999859999999899999988999998689399999
Q ss_pred HHHH
Q ss_conf 9972
Q 000680 816 VNAH 819 (1354)
Q Consensus 816 ~~~~ 819 (1354)
++.+
T Consensus 248 ~~~Q 251 (253)
T d3b60a1 248 HKMQ 251 (253)
T ss_dssp HHHT
T ss_pred HHHC
T ss_conf 9972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=405.16 Aligned_cols=226 Identities=26% Similarity=0.406 Sum_probs=208.1
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------
Q ss_conf 99848998437972799988731126688508808999879998877899888298658873899919------------
Q 000680 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1354)
Q Consensus 591 ~~~~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g------------ 658 (1354)
.++.|+++|++|+|+..++.++|+|+||++++|+.++|+|++|||||||+++|+|.++|.+|+|.++|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred CCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHH
T ss_conf 53369999989988999999767443899849989999999998499999998614378768998899853110137888
Q ss_pred -EEEEEECCCCCCCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf -1999807887898758899723999--9989999999995107988218999963126888877948999999999980
Q 000680 659 -SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 659 -~iayv~Q~pwi~~~TireNIlfg~~--~d~~~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAvy 735 (1354)
.++||+|+|+++++||+|||.+|.+ .+.++..+..+.+++...++.+|+|.+|.+|++|.+|||||||||+||||++
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCC
T ss_conf 77654045650027634655454210130278899999999899999856121113675167668954704899860445
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHH
Q ss_conf 49989998287888699999999999997814--9958999748943152029799993984889338689986182489
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1354)
Q Consensus 736 ~~~di~lLDdp~salD~~~~~~if~~~i~~~l--~~kT~Ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~el~~~~~~~~ 813 (1354)
++|+|++||||||+||+++.+.+++. +.... .++|+|+|||+++.+..||+|++|++|+|++.|+++||+++++.|.
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~-l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~ 246 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQL-LYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYW 246 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHH-HHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHH
T ss_conf 68707871675765685368999999-99976506989999959799998599999998999999889999985975889
Q ss_pred HHHH
Q ss_conf 9999
Q 000680 814 QLVN 817 (1354)
Q Consensus 814 ~l~~ 817 (1354)
++++
T Consensus 247 ~l~~ 250 (251)
T d1jj7a_ 247 AMVQ 250 (251)
T ss_dssp HHHC
T ss_pred HHHC
T ss_conf 9962
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=396.51 Aligned_cols=219 Identities=40% Similarity=0.707 Sum_probs=203.2
Q ss_pred CCEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCC
Q ss_conf 84899843797279998873112668850880899987999887789988829865887389991919998078878987
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1354)
Q Consensus 593 ~~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~pwi~~~ 672 (1354)
..|.|+|.+| + .+|+|+|+||++++|++++|+||+|||||||+++|+|++++.+|+|.++|+++|++|+||++++
T Consensus 37 ~~i~~~~~~~--~---g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~ 111 (281)
T d1r0wa_ 37 NNVSFSHLCL--V---GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPG 111 (281)
T ss_dssp ---CHHHHHH--T---TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSE
T ss_pred CCEEEEECCC--C---CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCC
T ss_conf 9679997698--9---9767737599985999999998999829999999957974788289999999998164302676
Q ss_pred CHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf 58899723999998999999999510798821899996312688887794899999999998049989998287888699
Q 000680 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1354)
Q Consensus 673 TireNIlfg~~~d~~~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAvy~~~di~lLDdp~salD~ 752 (1354)
||+|||.||..+++.++..+++.|.+..|+..+|+|+.|.+|++|.+|||||||||+||||++++|+|++||||||+||+
T Consensus 112 tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~ 191 (281)
T d1r0wa_ 112 TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 191 (281)
T ss_dssp EHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCH
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCH
T ss_conf 03214203334560579999999776999984612332355554237799999999999999869635133385544898
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
Q ss_conf 9999999999978149958999748943152029799993984889338689986182489999
Q 000680 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816 (1354)
Q Consensus 753 ~~~~~if~~~i~~~l~~kT~Ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~el~~~~~~~~~l~ 816 (1354)
.+.+.+++.++....+++|+|+|||+++.+..||+|++|++|+|++.|+++||+...+.|...+
T Consensus 192 ~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~ 255 (281)
T d1r0wa_ 192 FTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKL 255 (281)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHH
T ss_conf 9999999999988628999999925289998599999998999999878999960594899987
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=400.87 Aligned_cols=221 Identities=26% Similarity=0.473 Sum_probs=206.6
Q ss_pred EEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------EEE
Q ss_conf 8998437972799988731126688508808999879998877899888298658873899919-------------199
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1354)
Q Consensus 595 I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g-------------~ia 661 (1354)
++++|++|+|+.+ +++|+|+||++++|++++|+||+|||||||+++|+|.++|.+|+|.++| +|+
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 7999889987999--84142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EEECCCCCCCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9807887898758899723999--99899999999951079882189999631268888779489999999999804998
Q 000680 662 YVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 662 yv~Q~pwi~~~TireNIlfg~~--~d~~~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAvy~~~d 739 (1354)
||+|+|+++++||+|||.++.. .++++..++.+.+.+...++.+|+|.+|.|||+|.+|||||||||+||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHH
Q ss_conf 9998287888699999999999997814995899974894315202979999398488933868998618248999997
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1354)
Q Consensus 740 i~lLDdp~salD~~~~~~if~~~i~~~l~~kT~Ilvth~~~~l~~~d~i~~l~~G~i~~~G~~~el~~~~~~~~~l~~~ 818 (1354)
|++||||||+||+++.+.+++ .+....+++|+|+|||+++.+..||+|++|++|+|++.|+++||+++++.|.++++.
T Consensus 160 ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~ 237 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQK-ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHH-HHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHC
T ss_pred EEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHH
T ss_conf 999658865569889999988-788871799899997879999849999999899999999999998689699999999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.3e-36 Score=302.61 Aligned_cols=200 Identities=28% Similarity=0.368 Sum_probs=171.0
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEE
Q ss_conf 48998437972799988731126688508808999879998877899888298658873899919-----------1999
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1354)
Q Consensus 594 ~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g-----------~iay 662 (1354)
.|+++|.+++|+ +..+|+|+||++++||.++++||+|||||||+++|.|.++|++|+|.++| .|+|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~ 82 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 82 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEE
T ss_conf 499987999999---99998130678879989999999998299999999758999878799916413547700015899
Q ss_pred EECCCCCC-CCCHHHHHHCCCC---CCHH----HHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 80788789-8758899723999---9989----99999999510798821899996312688887794899999999998
Q 000680 663 VSQTSWIQ-SGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1354)
Q Consensus 663 v~Q~pwi~-~~TireNIlfg~~---~d~~----~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAv 734 (1354)
|+|+|-++ +.|++||+.|+.. ++++ +..++++.+.|... ...+...||||||||++||||+
T Consensus 83 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRvaiAraL 151 (239)
T d1v43a3 83 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL-----------LNRYPAQLSGGQRQRVAVARAI 151 (239)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGG-----------TTSCTTTCCSSCHHHHHHHHHH
T ss_pred EEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHHHHHHH
T ss_conf 80033534222099999999987399999999999999987598556-----------6099546999998899997664
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCCEEEEECCCCCHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 04998999828788869999999999999781-4-99589997489431520-297999939848893386899861
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAA-L-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 735 y~~~di~lLDdp~salD~~~~~~if~~~i~~~-l-~~kT~Ilvth~~~~l~~-~d~i~~l~~G~i~~~G~~~el~~~ 808 (1354)
..+|++++||||||+||+.....+.+. +..+ . .++|+|+|||+++.... ||+|++|++|+|++.|+.+|+.++
T Consensus 152 ~~~P~iLllDEPts~LD~~~~~~i~~l-l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 227 (239)
T d1v43a3 152 VVEPDVLLMDEPLSNLDAKLRVAMRAE-IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227 (239)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 049982430688666898999899999-9999873198079994899999986999999989999998599999868
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-36 Score=305.34 Aligned_cols=200 Identities=27% Similarity=0.413 Sum_probs=171.1
Q ss_pred EEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEEE
Q ss_conf 8998437972799988731126688508808999879998877899888298658873899919-----------19998
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g-----------~iayv 663 (1354)
|+++|.+++|+. ..+|+|+||++++||+++++||+|||||||+++|.|.+++++|+|.++| .|+||
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 77 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 77 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEE
T ss_pred CEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEE
T ss_conf 999999999899---99981117788699899999899982999999996587888888999999778886444322234
Q ss_pred ECCCCCC-CCCHHHHHHCCCCCC-------HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 0788789-875889972399999-------89999999995107988218999963126888877948999999999980
Q 000680 664 SQTSWIQ-SGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1354)
Q Consensus 664 ~Q~pwi~-~~TireNIlfg~~~d-------~~~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAvy 735 (1354)
+|+|-++ +.|++||+.|+.... +++..++++...|....+ .+..+||||||||++||||+.
T Consensus 78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~-----------~~~~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp CSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHH-----------CCHHHCCHHHHHHHHHHHHHH
T ss_conf 334202643337889789998759988999999999997578865664-----------896569999999999999970
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 499899982878886999999999999978-1499589997489431520-297999939848893386899861
Q 000680 736 NDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 736 ~~~di~lLDdp~salD~~~~~~if~~~i~~-~l~~kT~Ilvth~~~~l~~-~d~i~~l~~G~i~~~G~~~el~~~ 808 (1354)
.+|++++||||+++||+.+.+.+.+....- ...++|+|+|||+++.... ||+|++|++|+|++.|+.+|+.++
T Consensus 147 ~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 147 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 399889975888788988998999999999874298799994899999996999999979999998089999738
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.3e-36 Score=304.64 Aligned_cols=202 Identities=26% Similarity=0.358 Sum_probs=172.6
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 48998437972799988731126688508808999879998877899888298658873899919---------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 594 ~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g--------------- 658 (1354)
.|+++|.+++|+.. +..+|+|+||++++||.++|+||+|||||||+++|.|..+|++|+|.++|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred -EEEEEECCCCCCC-CCHHHHHHCCCC---CCH----HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -1999807887898-758899723999---998----9999999995107988218999963126888877948999999
Q 000680 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 -~iayv~Q~pwi~~-~TireNIlfg~~---~d~----~~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~ 729 (1354)
+++||+|+|-++. .|++|||.|+.. .++ ++.+++++.+.|.+..+ .+...||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-----------HFPRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHH-----------CCHHHCCHHHHHHHH
T ss_conf 451477304334666657777665567613799999999999986659176664-----------895459999985899
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCCEEEEECCCCCHHH-HCCEEEEEECCEEEEECCHHHHH
Q ss_conf 9999804998999828788869999999999999781--49958999748943152-02979999398488933868998
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELL 806 (1354)
Q Consensus 730 LARAvy~~~di~lLDdp~salD~~~~~~if~~~i~~~--l~~kT~Ilvth~~~~l~-~~d~i~~l~~G~i~~~G~~~el~ 806 (1354)
||||+..+|+++++|||+++||+.+...+.+ .+..+ ..++|+|+|||+++... .||+|++|++|+|++.|+.+|+.
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~-~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARA-LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHH-HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 8757760466145447866799899889989-999998635987999979999999969999999899999986999998
Q ss_pred HC
Q ss_conf 61
Q 000680 807 LA 808 (1354)
Q Consensus 807 ~~ 808 (1354)
++
T Consensus 230 ~~ 231 (242)
T d1oxxk2 230 DN 231 (242)
T ss_dssp HS
T ss_pred HC
T ss_conf 68
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.8e-36 Score=301.92 Aligned_cols=200 Identities=25% Similarity=0.347 Sum_probs=171.2
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 48998437972799988731126688508808999879998877899888298658873899919---------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 594 ~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g--------------- 658 (1354)
.|+++|.+++|+. ..+++|+||++++||+++++||+|||||||+++|.|.++|++|+|.++|
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 1899869999899---9998560668869989999999998099999999648788989899999980356644424532
Q ss_pred --EEEEEECCCCCCC-CCHHHHHHCCC---CCCH----HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf --1999807887898-75889972399---9998----999999999510798821899996312688887794899999
Q 000680 659 --SIAYVSQTSWIQS-GSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 659 --~iayv~Q~pwi~~-~TireNIlfg~---~~d~----~~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi 728 (1354)
.++||+|+|-+++ .|++||+.|+. ..+. ++..++++.+.|.... ..+...|||||||||
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~-----------~~~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELL-----------NRKPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGT-----------TCCGGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------CCCHHHCCHHHHHHH
T ss_conf 255120022122231011667633068772999899999999999875996676-----------299334999999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCCHHHH-CCEEEEEECCEEEEECCHHHH
Q ss_conf 999998049989998287888699999999999997814--99589997489431520-297999939848893386899
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1354)
Q Consensus 729 ~LARAvy~~~di~lLDdp~salD~~~~~~if~~~i~~~l--~~kT~Ilvth~~~~l~~-~d~i~~l~~G~i~~~G~~~el 805 (1354)
++|||+..+|++++|||||++||+.+...+.+ .+..+. .|.|+|++||+++.... ||+|++|++|+|++.|+.+|+
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~-~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el 227 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA-ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHH-HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 99999826998898258876569899989999-99999863698899995999999996999999989999998599999
Q ss_pred HHC
Q ss_conf 861
Q 000680 806 LLA 808 (1354)
Q Consensus 806 ~~~ 808 (1354)
.++
T Consensus 228 ~~~ 230 (240)
T d1g2912 228 YDK 230 (240)
T ss_dssp HHS
T ss_pred HHC
T ss_conf 828
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.9e-36 Score=301.71 Aligned_cols=198 Identities=28% Similarity=0.419 Sum_probs=171.4
Q ss_pred EEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEEE
Q ss_conf 8998437972799988731126688508808999879998877899888298658873899919-----------19998
Q 000680 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1354)
Q Consensus 595 I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g-----------~iayv 663 (1354)
|+++|.+++|+. .+|+|+||++++||+++++||+|||||||+++|.|.++|++|+|.++| .++||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v 77 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEE
T ss_conf 899989999499----7884337898799899999899982999999996476888788999567346521657405615
Q ss_pred ECCCCCCC-CCHHHHHHCCCC----CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 07887898-758899723999----9989999999995107988218999963126888877948999999999980499
Q 000680 664 SQTSWIQS-GSIRDNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 664 ~Q~pwi~~-~TireNIlfg~~----~d~~~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAvy~~~ 738 (1354)
+|+|-++. .|++||+.|+.. -++++..++++...+.... ..+..+||||||||+++|||+..+|
T Consensus 78 ~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGG~~QRvaiAraL~~~P 146 (229)
T d3d31a2 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL-----------DRNPLTLSGGEQQRVALARALVTNP 146 (229)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTT-----------TSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH-----------HCCHHHCCHHHHCCHHHHHHHHCCC
T ss_conf 12111174665778888877640553899999999982565557-----------5895547999840140304344367
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCCEEEEECCCCCHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 8999828788869999999999999781--499589997489431520-297999939848893386899861
Q 000680 739 DIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 739 di~lLDdp~salD~~~~~~if~~~i~~~--l~~kT~Ilvth~~~~l~~-~d~i~~l~~G~i~~~G~~~el~~~ 808 (1354)
+++|||||||+||+++...+.+ .+..+ ..+.|+|++||+++.... ||+|++|++|+|++.|+.+|+.++
T Consensus 147 ~iLllDEPts~LD~~~~~~i~~-~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 147 KILLLDEPLSALDPRTQENARE-MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp SEEEEESSSTTSCHHHHHHHHH-HHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 7144347876799899999999-99999864796899974999999996999999979999998699999868
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.5e-35 Score=293.11 Aligned_cols=202 Identities=25% Similarity=0.401 Sum_probs=171.8
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 48998437972799988731126688508808999879998877899888298658873899919---------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 594 ~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g--------------- 658 (1354)
.++++|.+++|.. ..+|+|+||++++||+++|+|++|||||||+++|.|..++++|+|.++|
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 6999978999899---9988150668869979999989998299999999747667899779999993367752000023
Q ss_pred -----------EEEEEECCCCCCC-CCHHHHHHCC----CCCC----HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf -----------1999807887898-7588997239----9999----899999999951079882189999631268888
Q 000680 659 -----------SIAYVSQTSWIQS-GSIRDNILYG----KPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1354)
Q Consensus 659 -----------~iayv~Q~pwi~~-~TireNIlfg----~~~d----~~~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~ 718 (1354)
+++||+|+|-+++ .|+.|||.++ ...+ .++..++++.+.|.+.... ....
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG----------KYPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT----------SCGG
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHC----------CCCC
T ss_conf 517679997454489983323141101021365657876299989999999999998299524430----------6822
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHH-CCEEEEEECCEE
Q ss_conf 779489999999999804998999828788869999999999999781-499589997489431520-297999939848
Q 000680 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1354)
Q Consensus 719 ~LSGGQkqRi~LARAvy~~~di~lLDdp~salD~~~~~~if~~~i~~~-l~~kT~Ilvth~~~~l~~-~d~i~~l~~G~i 796 (1354)
+||||||||+++|||+..+|++++||||+++||+.+.+.|++ .+..+ -+|+|+|+|||+++.+.. ||+|++|++|+|
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~-ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~i 227 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf 056778889899999843998788524555688788889987-6554103688338994899999986999999979999
Q ss_pred EEECCHHHHHHCC
Q ss_conf 8933868998618
Q 000680 797 TQSGNYQELLLAG 809 (1354)
Q Consensus 797 ~~~G~~~el~~~~ 809 (1354)
++.|+.+|+..+.
T Consensus 228 v~~g~~~ev~~~P 240 (258)
T d1b0ua_ 228 EEEGDPEQVFGNP 240 (258)
T ss_dssp EEEECHHHHHHSC
T ss_pred EEECCHHHHHHCC
T ss_conf 9984999998389
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-36 Score=302.16 Aligned_cols=203 Identities=26% Similarity=0.355 Sum_probs=169.8
Q ss_pred EEEEEEEEEECCCCC-CCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 899843797279998-8731126688508808999879998877899888298658873899919---------------
Q 000680 595 VKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 595 I~~~~~~f~w~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g--------------- 658 (1354)
|+++|.+++|+.+.. ..+|+|+||++++||+++|+||+|||||||+++|.|..+|++|+|.++|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred -EEEEEECCCCCCC-CCHHHHHHCC-----CCCC--HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -1999807887898-7588997239-----9999--89999999995107988218999963126888877948999999
Q 000680 659 -SIAYVSQTSWIQS-GSIRDNILYG-----KPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1354)
Q Consensus 659 -~iayv~Q~pwi~~-~TireNIlfg-----~~~d--~~~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~ 729 (1354)
+++||+|+|-+++ .|++|||.++ .+-. +++..+.++.+.|.+-. ......|||||||||+
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~-----------~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-----------DSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTT-----------SSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH-----------HCCHHHCCHHHHHHHH
T ss_conf 16643022522279964999999999984999899999999999976990355-----------4894349999998999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99998049989998287888699999999999997814-99589997489431520-29799993984889338689986
Q 000680 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1354)
Q Consensus 730 LARAvy~~~di~lLDdp~salD~~~~~~if~~~i~~~l-~~kT~Ilvth~~~~l~~-~d~i~~l~~G~i~~~G~~~el~~ 807 (1354)
||||+..+|+++++||||++||+.+.+.+++....-.. .++|+|+|||++..... ||+|++|++|+|++.|+.+|+.+
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred C
Q ss_conf 1
Q 000680 808 A 808 (1354)
Q Consensus 808 ~ 808 (1354)
+
T Consensus 231 ~ 231 (240)
T d3dhwc1 231 H 231 (240)
T ss_dssp S
T ss_pred C
T ss_conf 8
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.7e-35 Score=295.68 Aligned_cols=200 Identities=26% Similarity=0.371 Sum_probs=161.5
Q ss_pred EEEEEEEEEECCCCC-CCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 899843797279998-8731126688508808999879998877899888298658873899919---------------
Q 000680 595 VKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1354)
Q Consensus 595 I~~~~~~f~w~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g--------------- 658 (1354)
|+++|.+++|+.... ..+|+|+||++++||.++|+||+|||||||+++|.|..+|++|+|.++|
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred --EEEEEECCCCCC-CCCHHHHHHCCC------CCC-HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf --199980788789-875889972399------999-8999999999510798821899996312688887794899999
Q 000680 659 --SIAYVSQTSWIQ-SGSIRDNILYGK------PMD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1354)
Q Consensus 659 --~iayv~Q~pwi~-~~TireNIlfg~------~~d-~~~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi 728 (1354)
.|+||+|+|-++ +.|++||+.++. .++ +++.+++.+...+ -.|++ ........+|||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~L~~---~~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM----AELEE---RFANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHH----TTCCG---GGTTCCGGGSCHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH----HCHHH---HHHCCCHHHCCHHHHHHH
T ss_conf 55577880412417686688877578887224789999999999998876----24234---553488023899999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCH
Q ss_conf 99999804998999828788869999999999999781--499589997489431520297999939848893386
Q 000680 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA--LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802 (1354)
Q Consensus 729 ~LARAvy~~~di~lLDdp~salD~~~~~~if~~~i~~~--l~~kT~Ilvth~~~~l~~~d~i~~l~~G~i~~~G~~ 802 (1354)
++|||+..+|++++||||||+||+.+.+.+++.. ..+ ..++|+|+|||+++....||+|++|++|+|++.|+.
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l-~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLL-KKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH-HHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHH-HHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 9875652278889946876546989999999999-99998439999998788899986998999989999995257
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.4e-34 Score=286.45 Aligned_cols=206 Identities=25% Similarity=0.374 Sum_probs=168.7
Q ss_pred CCCEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------
Q ss_conf 9848998437972799988731126688508808999879998877899888298658873899919-------------
Q 000680 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1354)
Q Consensus 592 ~~~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g------------- 658 (1354)
+..++++|.+++|.. ..+|+|+||++++||+++++||+|||||||+++|.|.+++.+|+|.++|
T Consensus 4 d~~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r 80 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp SEEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHH
T ss_conf 607999618999899---88883025788899799999999985999999996788888038984244344660888887
Q ss_pred -EEEEEECCCCCCC-CCHHHHHHCCCC--CCHHHHHHHH-HHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf -1999807887898-758899723999--9989999999-9951079882189999631268888779489999999999
Q 000680 659 -SIAYVSQTSWIQS-GSIRDNILYGKP--MDKARYDKAI-KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1354)
Q Consensus 659 -~iayv~Q~pwi~~-~TireNIlfg~~--~d~~~y~~vi-~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARA 733 (1354)
.++|+||++-+++ .|++||+.++.. .+.+...+.+ ++..+...++.. ......+||||||||+++|||
T Consensus 81 ~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~LSGG~~Qrv~iAra 153 (240)
T d1ji0a_ 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER-------LKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTT-------TTSBSSSSCHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHH-------HHCCHHHCCHHHHHHHHHHHH
T ss_conf 4235567655457763699999988873278889999999999874176888-------758543389999999999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHH-HCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 804998999828788869999999999999781-49958999748943152-0297999939848893386899861
Q 000680 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 734 vy~~~di~lLDdp~salD~~~~~~if~~~i~~~-l~~kT~Ilvth~~~~l~-~~d~i~~l~~G~i~~~G~~~el~~~ 808 (1354)
+..+|++++||||+++||+...+.+++ .+..+ .+|+|+|++||+++.+. .||+|++|++|+|++.|+++|+.++
T Consensus 154 L~~~P~lLllDEPt~gLD~~~~~~i~~-~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 154 LMSRPKLLMMDEPSLGLAPILVSEVFE-VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 982998740039886799999999999-9999996899899995889999996999999989999998489998429
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-34 Score=288.28 Aligned_cols=200 Identities=22% Similarity=0.357 Sum_probs=165.3
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--------------
Q ss_conf 489984379727999887311266885088089998799988778998882986588738999191--------------
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------- 659 (1354)
Q Consensus 594 ~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~-------------- 659 (1354)
-++++|.+.+|+. ..+|+|+||++++||+++++||+|||||||+++|.|.+++++|+|.++|.
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 6999778999799---6887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEEECCCCCC-CCCHHHHHHCCCCC-----------------CHHHHHHH---HHHHCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99980788789-87588997239999-----------------98999999---99951079882189999631268888
Q 000680 660 IAYVSQTSWIQ-SGSIRDNILYGKPM-----------------DKARYDKA---IKACALDKDINNFDHGDLTEIGQRGL 718 (1354)
Q Consensus 660 iayv~Q~pwi~-~~TireNIlfg~~~-----------------d~~~y~~v---i~ac~L~~dl~~lp~GD~T~IGe~G~ 718 (1354)
++|++|+|-++ +.|++||+.+|... +++..+++ ++...+.. ....+..
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~ 149 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-----------LYDRKAG 149 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-----------GTTSBGG
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCH-----------HCCCCHH
T ss_conf 87257764247887423214301333034504566542135328999999999987619630-----------2059535
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-HCCEEEEEECCEEE
Q ss_conf 77948999999999980499899982878886999999999999978149958999748943152-02979999398488
Q 000680 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQIT 797 (1354)
Q Consensus 719 ~LSGGQkqRi~LARAvy~~~di~lLDdp~salD~~~~~~if~~~i~~~l~~kT~Ilvth~~~~l~-~~d~i~~l~~G~i~ 797 (1354)
+||||||||+++|||+..+|++++||||+++||+...+.+++....-.-+|+|+|++||+++.+. .||+|++|++|+|+
T Consensus 150 ~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv 229 (254)
T d1g6ha_ 150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 229 (254)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 69918888999999997592723243976569999999999999999978998999947699999869999999699899
Q ss_pred EECCHHHHHH
Q ss_conf 9338689986
Q 000680 798 QSGNYQELLL 807 (1354)
Q Consensus 798 ~~G~~~el~~ 807 (1354)
..|+.+|+.+
T Consensus 230 ~~g~~~e~~~ 239 (254)
T d1g6ha_ 230 AEGRGEEEIK 239 (254)
T ss_dssp EEEESHHHHH
T ss_pred EEECHHHHHH
T ss_conf 9966899865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8.7e-34 Score=282.02 Aligned_cols=201 Identities=22% Similarity=0.325 Sum_probs=169.1
Q ss_pred CCEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------EE
Q ss_conf 848998437972799988731126688508808999879998877899888298658873899919------------19
Q 000680 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1354)
Q Consensus 593 ~~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g------------~i 660 (1354)
++|.++|.+.+|.. ..+|+|+||++++||.++++||+|||||||+++|.|.++|.+|+|.++| .+
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHE
T ss_conf 97899958999999---999806256884897999999999999999999966988788879998672446839887218
Q ss_pred EEEECCCCCC-CCCHHHHHHCCCC---CCHHH----HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9980788789-8758899723999---99899----99999995107988218999963126888877948999999999
Q 000680 661 AYVSQTSWIQ-SGSIRDNILYGKP---MDKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1354)
Q Consensus 661 ayv~Q~pwi~-~~TireNIlfg~~---~d~~~----y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LAR 732 (1354)
+|+||++.++ +.|++||+.|... .++++ .+++++.+.|.+. ..++..+||||||||+++||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK-----------IKDRVSTYSKGMVRKLLIAR 146 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGG-----------GGSBGGGCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HHHHHHHCCHHHHHHHHHHH
T ss_conf 6750015468786677888989986179989999999999986797888-----------85045337998989999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 9804998999828788869999999999999781-499589997489431520-297999939848893386899861
Q 000680 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 733 Avy~~~di~lLDdp~salD~~~~~~if~~~i~~~-l~~kT~Ilvth~~~~l~~-~d~i~~l~~G~i~~~G~~~el~~~ 808 (1354)
|+.++|++++||||+++||+...+.+++ .+... -+|+|+|++||+++.+.. ||+|++|++|+|++.|+++|+.++
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~-~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRK-ILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 9865999887337988979899999999-9999996599899995989999996999999989999999289999865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2e-33 Score=279.17 Aligned_cols=184 Identities=30% Similarity=0.448 Sum_probs=153.1
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEEEECCCCCCC-CCHHHHHH
Q ss_conf 31126688508808999879998877899888298658873899919-----------1999807887898-75889972
Q 000680 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVSQTSWIQS-GSIRDNIL 679 (1354)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g-----------~iayv~Q~pwi~~-~TireNIl 679 (1354)
.+ |+||+++ ++.++++||+|||||||+++|.|.++|.+|+|.++| .|+||+|+|-++. .||+|||.
T Consensus 15 ~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 15 RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 99-9999749-979999979998099999999739998962899999998869989928522523144352201557666
Q ss_pred CCCC-CCHH----HHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf 3999-9989----9999999951079882189999631268888779489999999999804998999828788869999
Q 000680 680 YGKP-MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1354)
Q Consensus 680 fg~~-~d~~----~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAvy~~~di~lLDdp~salD~~~ 754 (1354)
||.. +++. +..++++.+.|.+ ....+...|||||||||++|||+..+|++++||||+|+||+++
T Consensus 93 ~~l~~~~~~~~~~~v~~~l~~~gl~~-----------~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~ 161 (240)
T d2onka1 93 YGLRNVERVERDRRVREMAEKLGIAH-----------LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT 161 (240)
T ss_dssp TTCTTSCHHHHHHHHHHHHHTTTCTT-----------TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHH
T ss_conf 53233677889999999998638375-----------6657944489999899999877751677067528655588799
Q ss_pred HHHHHHHHHHHH-C-CCCEEEEECCCCCHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 999999999781-4-99589997489431520-2979999398488933868998618
Q 000680 755 AATLFNECVMAA-L-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1354)
Q Consensus 755 ~~~if~~~i~~~-l-~~kT~Ilvth~~~~l~~-~d~i~~l~~G~i~~~G~~~el~~~~ 809 (1354)
.+.+.+.. ..+ . .+.|+|+|||+++.+.. ||+|++|++|++++.|+.+|+.+..
T Consensus 162 ~~~i~~~i-~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~ 218 (240)
T d2onka1 162 KGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp HHHHHHHH-HHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCC
T ss_conf 99999999-9998743976999818999999969999999899999990699983299
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.98 E-value=3.3e-32 Score=269.40 Aligned_cols=142 Identities=30% Similarity=0.482 Sum_probs=132.9
Q ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 98660999988998479999842262288609969999879996489999999315489997799969638999947885
Q 000680 1211 PFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290 (1354)
Q Consensus 1211 p~~G~Ief~nvsfrY~~~~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LR 1290 (1354)
..+|.|+|+||+|+|+++.++||+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+++|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCCCEECCCCCCCCCCHHHHCCC-CCCCCHHHHHHHHHHCCCCHHHHCCCCCCCC----CCCCCCCC
Q ss_conf 01906446652234541551499-9999999999999984980588307777678----88644442
Q 000680 1291 VKLSIIPQEPTLFRGSVRTNLDP-LGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1291 s~isiIpQdp~LF~GTIR~NLdp-~~~~tDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
+++++|||+|.+|+||||+||.. ....+|+++++|++.+++++++..+|+|||+ .|.++|-|
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 158 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGG 158 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHH
T ss_conf 4145651015689987999985158679999999999996979999736242010333888984999
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.2e-31 Score=265.10 Aligned_cols=138 Identities=29% Similarity=0.507 Sum_probs=131.2
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCC
Q ss_conf 09999889984799998422622886099699998799964899999993154899977999696389999478850190
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~Ief~nvsfrY~~~~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LRs~is 1294 (1354)
+|+|+||+|+|+++.++||+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||+||++++.+++|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHCCCCHHHHCCCCCCCC----CCCCCCCC
Q ss_conf 644665223454155149999-99999999999984980588307777678----88644442
Q 000680 1295 IIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1295 iIpQdp~LF~GTIR~NLdp~~-~~tDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
+|||||.+|+||||+||.... .+++++++++++.+++.+++..+|+|+++ .|.++|-|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGG 143 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGG 143 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHH
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHH
T ss_conf 982446557840003522357554388899999997557888763201344327878866988
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=2.1e-30 Score=255.06 Aligned_cols=195 Identities=24% Similarity=0.381 Sum_probs=161.9
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------EE
Q ss_conf 48998437972799988731126688508808999879998877899888298658873899919-------------19
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1354)
Q Consensus 594 ~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g-------------~i 660 (1354)
-++++|++. ...|++|||++++||+++++||+|||||||+++|.|.. +.+|+|.++| ..
T Consensus 3 il~~~dv~~-------~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAE-------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECC-------TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCC-------CCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 999987415-------71555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEEECCCC-CCCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-
Q ss_conf 99807887-898758899723999--99899999999951079882189999631268888779489999999999804-
Q 000680 661 AYVSQTSW-IQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN- 736 (1354)
Q Consensus 661 ayv~Q~pw-i~~~TireNIlfg~~--~d~~~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAvy~- 736 (1354)
+|++|+.- .+..++.+|+.++.. ...++.+++++.+.+.+. ++.+..+||||||||+++|||+.+
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 24512135774420988764100146689999999986598767-----------6768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHH-HHCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf ------998999828788869999999999999781-4995899974894315-20297999939848893386899861
Q 000680 737 ------DADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLA 808 (1354)
Q Consensus 737 ------~~di~lLDdp~salD~~~~~~if~~~i~~~-l~~kT~Ilvth~~~~l-~~~d~i~~l~~G~i~~~G~~~el~~~ 808 (1354)
+|++++||||+++||+...+.+. +.+..+ .+|+|+|++||+++.+ ..||+|++|++|++++.|+.+|++..
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~-~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHH-HHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 71338998899971877778989999999-99999986799999996779999997999999979989998899998188
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=2.4e-30 Score=254.58 Aligned_cols=141 Identities=30% Similarity=0.490 Sum_probs=131.7
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC
Q ss_conf 86609999889984799998422622886099699998799964899999993154899977999696389999478850
Q 000680 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291 (1354)
Q Consensus 1212 ~~G~Ief~nvsfrY~~~~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LRs 1291 (1354)
..|+|+|+||+|+|+....++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|+++++.+++|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CCCEECCCCCCCCCCHHHHCC--CCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCC----CCCCCCCC
Q ss_conf 190644665223454155149--99999999999999984980588307777678----88644442
Q 000680 1292 KLSIIPQEPTLFRGSVRTNLD--PLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1292 ~isiIpQdp~LF~GTIR~NLd--p~~~~tDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
++++|||||.+|++|+++|+. +...++++++++|++.+++.++++.+|+|||+ .|+++|-|
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGG 156 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 156 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHH
T ss_conf 6879950254478620243320572208999999999998179999735544101434888984999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1e-29 Score=249.56 Aligned_cols=142 Identities=30% Similarity=0.471 Sum_probs=130.3
Q ss_pred CCCCEEEEEEEEEEECCC-CCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 986609999889984799-9984226228860996999987999648999999931548999779996963899994788
Q 000680 1211 PFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL 1289 (1354)
Q Consensus 1211 p~~G~Ief~nvsfrY~~~-~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~L 1289 (1354)
+.+|.|+|+||+|+|+.. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|+|||+||++++.+++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCCCEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHCCCCCCCC----CCCCCCCC
Q ss_conf 5019064466522345415514999--999999999999984980588307777678----88644442
Q 000680 1290 RVKLSIIPQEPTLFRGSVRTNLDPL--GLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1290 Rs~isiIpQdp~LF~GTIR~NLdp~--~~~tDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|+++++|||+|.+|++|||+|+... ...++++++++++++++.+++..+|+|+++ .|.++|-|
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGG 155 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGG 155 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHH
T ss_conf 877654045650027634655454210130278899999999899999856121113675167668954
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=1.8e-28 Score=239.69 Aligned_cols=180 Identities=24% Similarity=0.404 Sum_probs=143.2
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC--------EEEEEEC
Q ss_conf 48998437972799988731126688508808999879998877899888298658873899919--------1999807
Q 000680 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1354)
Q Consensus 594 ~I~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g--------~iayv~Q 665 (1354)
.++++|.+++|+ .++|+|+||++++|++++|+||+|||||||+++|.|.++|.+|+|.++| .++|+||
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~ 77 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 77 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEE
T ss_conf 599998999939----9288420889859989999999997199999999662056778899998962673670899950
Q ss_pred CCCCC-CCCHHHHHH-----CCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 88789-875889972-----399999899999999951079882189999631268888779489999999999804998
Q 000680 666 TSWIQ-SGSIRDNIL-----YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 666 ~pwi~-~~TireNIl-----fg~~~d~~~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAvy~~~d 739 (1354)
++.++ +-|++||+. +|.+.++++..+.++...+ ++ +.++..+||||||||+++|||++++|+
T Consensus 78 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~------~~------~~~~~~~LSgG~~qrv~ia~al~~~~~ 145 (200)
T d1sgwa_ 78 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV------LD------LKKKLGELSQGTIRRVQLASTLLVNAE 145 (200)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC------CC------TTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC------CC------CCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 135788828999999999754886379999999987488------56------301268689718888999998864998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHCCEEEEEEC
Q ss_conf 99982878886999999999999978149--9589997489431520297999939
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSEVDRILVLEG 793 (1354)
Q Consensus 740 i~lLDdp~salD~~~~~~if~~~i~~~l~--~kT~Ilvth~~~~l~~~d~i~~l~~ 793 (1354)
+++||||+++||+...+.+++... ...+ +.++|..+|+ +..||.+.+|..
T Consensus 146 llllDEPt~gLD~~~~~~i~~~l~-~~~~~~~~~ii~~~~~---l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLKSIL-EILKEKGIVIISSREE---LSYCDVNENLHK 197 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHH-HHHHHHSEEEEEESSC---CTTSSEEEEGGG
T ss_pred EEEECCCCCCCCHHHHHHHHHHHH-HHHHCCCEEEEEEECH---HHHCCHHHHEEE
T ss_conf 999868620169999999999999-9986799999999162---544161234010
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.96 E-value=1.1e-29 Score=249.18 Aligned_cols=136 Identities=26% Similarity=0.564 Sum_probs=127.4
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCCE
Q ss_conf 99998899847999984226228860996999987999648999999931548999779996963899994788501906
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 Ief~nvsfrY~~~~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LRs~isi 1295 (1354)
||++||+|+|+++ ++||+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|+++++.+.+|+++++
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 7999889987999-841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHCCCCCCCC----CCCCCCCC
Q ss_conf 4466522345415514999--999999999999984980588307777678----88644442
Q 000680 1296 IPQEPTLFRGSVRTNLDPL--GLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1296 IpQdp~LF~GTIR~NLdp~--~~~tDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
|||||.+|+||||+|+... ...++++++++++.+++.+++..+|+++++ .|.++|-|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGG 143 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGG 143 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHH
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
T ss_conf 756654578534543012445554235677899999755542037421015236878987999
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.95 E-value=7.4e-23 Score=194.95 Aligned_cols=309 Identities=12% Similarity=0.101 Sum_probs=250.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998604525899999999999999996999999651278--7760---288999989999999999999999999
Q 000680 887 KPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP--KITS---GILIGVYAGVSTASAVFVYFRSFFAAH 961 (1354)
Q Consensus 887 ~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~---~~~l~iy~~l~~~~~i~~~~~~~~~~~ 961 (1354)
+.+++|+++.++ .+.+.+++..+..+.....++.++..++.. ..+. ..+..++.++.++..++.+++.+....
T Consensus 5 krl~~~~~~~k~--~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (319)
T d3b60a2 5 RRLWPTIAPFKA--GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISW 82 (319)
T ss_dssp HHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999--999999999999999999999999999987446877899999999999999764533546654434
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999987639776633358014799873139999943199999999999999999998997758999999
Q 000680 962 LGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVA 1041 (1354)
Q Consensus 962 ~~~~as~~l~~~l~~~il~~p~~fFd~~p~GrIlnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~i~vi~~~~~~~~l~~ 1041 (1354)
.+.+...++++++++++++.|++||+++++|++++|+++|++.++..+...+...+...+.+++.++++...+|.++++.
T Consensus 83 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~ 162 (319)
T d3b60a2 83 VSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIIL 162 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 31000110004777765010111102333221111121212100001111120011233445668888876520021025
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999997799999981603527899999761538887234189999999999988866799999999999
Q 000680 1042 IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWL 1121 (1354)
Q Consensus 1042 i~~~~~~~~i~~~y~~~sr~l~rl~~~~~spi~s~~~Etl~Gl~tIRaf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl 1121 (1354)
+...+++..+..++.+..++..+......+...++..|.++|+++||+|+.|+.+.+++.+..+...+..........+.
T Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (319)
T d3b60a2 163 VVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSIS 242 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 66899999988766668778789887644567788777624872353111010245666665313567788888777740
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999989999999999-9985289657669999999999999999999999999998855999999834399999
Q 000680 1122 ILRVEALQNLTLFTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEP 1197 (1354)
Q Consensus 1122 ~~rl~~l~~~~~~~~~l~-~v~~~~g~ls~g~~gl~l~ya~~l~~~l~~lv~~~~~le~~~~sveRi~ey~~~~~E~ 1197 (1354)
.....++..+....+... ...+..|.+++|.+..++.|...+..|+..+...+.+++++.+|.||+.|++|.|+|+
T Consensus 243 ~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E~ 319 (319)
T d3b60a2 243 DPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK 319 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 64010000002379999999999809978999999999999999999999999999999999999999996699899
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.93 E-value=1.5e-22 Score=192.42 Aligned_cols=309 Identities=15% Similarity=0.163 Sum_probs=241.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCC---HHH-----HHHHHHHHHHHHHHHH
Q ss_conf 89999999860452589999999999999999699999965127----87760---288-----9999899999999999
Q 000680 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI----PKITS---GIL-----IGVYAGVSTASAVFVY 953 (1354)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~l~~~~~~~~~~~~~~~~~wl~~~~~~----~~~~~---~~~-----l~iy~~l~~~~~i~~~ 953 (1354)
.+.+++|+++.+.. +.+.+++.....+.....++.++..++. ..... ... ...+.++.+...++.+
T Consensus 2 lKrl~~~~k~~k~~--~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (323)
T d2hyda2 2 IKRYLQFVKPYKYR--IFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEF 79 (323)
T ss_dssp HHHHHHHHGGGHHH--HHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999--9999999999999999999999999999862677421556899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999876397766333580147998731399999431999999999999999999989977
Q 000680 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFV 1033 (1354)
Q Consensus 954 ~~~~~~~~~~~~as~~l~~~l~~~il~~p~~fFd~~p~GrIlnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~i~vi~~~ 1033 (1354)
++.+.....+.+...++++++++++++.|++|||+.++|++++|+++|++.++..+...+...+..++.+++.++++...
T Consensus 80 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 80 IRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999998556778888766540233210001222110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58999999999999999999999977999999816035278999997615388872341899999999999888667999
Q 000680 1034 TWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFH 1113 (1354)
Q Consensus 1034 ~~~~~l~~i~~~~~~~~i~~~y~~~sr~l~rl~~~~~spi~s~~~Etl~Gl~tIRaf~~~~~f~~~~~~~~d~~~~~~~~ 1113 (1354)
+|.++++.++..+++..+...+.+..++..+......+...+++.|+++|+++||+|+.|+.+.+++.+..+...+....
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999899999999-9999852896576699999999999999999999999999988559999998343
Q 000680 1114 TNGVMEWLILRVEALQNLTLFTAA-LFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH 1192 (1354)
Q Consensus 1114 ~~~~~~wl~~rl~~l~~~~~~~~~-l~~v~~~~g~ls~g~~gl~l~ya~~l~~~l~~lv~~~~~le~~~~sveRi~ey~~ 1192 (1354)
......+......++..+...... +....+..|.+++|.+..++++...+..++..+.+.+.++++.++|.||+.|++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCCC
Q ss_conf 9999
Q 000680 1193 IPPE 1196 (1354)
Q Consensus 1193 ~~~E 1196 (1354)
.|+|
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
T ss_conf 9998
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.92 E-value=6.5e-19 Score=163.52 Aligned_cols=306 Identities=11% Similarity=0.037 Sum_probs=229.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99996687999999999999999999999999998413797334689999999999999999999999999999999999
Q 000680 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1354)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~r~r 350 (1354)
..+.|++.++...++.++..++....|++++.+++..-.+. +...-+.+++.+++..++..++.....+...+.+.++.
T Consensus 10 ~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (319)
T d3b60a2 10 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT-DRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVV 88 (319)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST-THHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999999999999999999874468-77899999999999999764533546654434310001
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998548945678899789999999699999628989-99999999999999999999996899999999999
Q 000680 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1354)
Q Consensus 351 ~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~-~~~~w~~plqi~ia~~~L~~~lG~~~l~gl~v~~i 429 (1354)
..+...+|+|.++.+....++.++|++++.++.|++.+.+.... ........+.++.+++.++..-...+++.++.+.+
T Consensus 89 ~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~ 168 (319)
T d3b60a2 89 MTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPI 168 (319)
T ss_dssp HHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 10004777765010111102333221111121212100001111120011233445668888876520021025668999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998999999999999999999999999999994299999822499999999999999999999999999999999989
Q 000680 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM 509 (1354)
Q Consensus 430 ~~~l~~~~~~~~~~~q~~~m~~~D~Ri~~~~EiL~~Ik~IK~~awE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~ 509 (1354)
...+.....++..+.+++..+..++..+.++|.++|++.||.+++|+.+.++..+..++..+...+.....+........
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (319)
T d3b60a2 169 VSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 248 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99988766668778789887644567788777624872353111010245666665313567788888777740640100
Q ss_pred HHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999-9999998728988888889999999999999999999999999999999999999843567
Q 000680 510 SPTIISS-VIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE 577 (1354)
Q Consensus 510 ~p~lv~~-~~f~~~~l~~~~~Lt~~~vFt~l~lf~~L~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~e 577 (1354)
...+... +.+.+..+..++.+|++.+++.+.+...+..|+..++..++.+.++.+|.+|+.++|+.|+
T Consensus 249 ~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 249 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 000023799999999998099789999999999999999999999999999999999999999966998
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.90 E-value=5.1e-19 Score=164.34 Aligned_cols=305 Identities=14% Similarity=0.122 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99996687999999999999999999999999998413797-3346---8--9999999999999999999999999999
Q 000680 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGE-ENLQ---E--GLSIVGCLIITKVVESFTQRHCFFGSRR 344 (1354)
Q Consensus 271 l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~-~~~~---~--g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 344 (1354)
..+.|++.++...++.++..++....|+++..+++....+. .... . .+.++.++++..++..++.....+...+
T Consensus 8 ~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (323)
T d2hyda2 8 FVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQW 87 (323)
T ss_dssp HHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999986267742155689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998548945678899789999999699999628989-99999999999999999999996899999
Q 000680 345 SGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPG 423 (1354)
Q Consensus 345 ~g~r~r~~l~~~Iy~K~L~ls~~~~~~~~~G~ivNlms~D~~~i~~~~~~-~~~~w~~plqi~ia~~~L~~~lG~~~l~g 423 (1354)
.+.+++..+...+|+|.++++....++.++|+++|.++.|++.+.+.... +...+...+.++++++.++..-...++..
T Consensus 88 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~ 167 (323)
T d2hyda2 88 TSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAA 167 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99855677888876654023321000122211000111133210011134542011146653346544000014688899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998999999999999999999999999999994299999822499999999999999999999999999999
Q 000680 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG 503 (1354)
Q Consensus 424 l~v~~i~~~l~~~~~~~~~~~q~~~m~~~D~Ri~~~~EiL~~Ik~IK~~awE~~f~~~i~~~R~~El~~l~~~~~~~~~~ 503 (1354)
++++.+...+...+.++..+.+++..+..++..+.++|.++|+|+||.+++|+.+.++..+..++..+...+........
T Consensus 168 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 247 (323)
T d2hyda2 168 LFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYS 247 (323)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf 99887777777641233320267789899999978788755970234676411100233022311110156776520000
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99998999999999--99999872898888888999999999999999999999999999999999999984356
Q 000680 504 TVIYWMSPTIISSV--IFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH 576 (1354)
Q Consensus 504 ~~~~~~~p~lv~~~--~f~~~~l~~~~~Lt~~~vFt~l~lf~~L~~pl~~lp~~i~~~~~a~vS~~RI~~fL~~~ 576 (1354)
.........+...+ .++++.... +.++++.+++.+.++..+..|+..++..+..+.++.+|.+||.++|++|
T Consensus 248 ~~~~~~~~~~~~~~~l~~~~~~~~~-g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e 321 (323)
T d2hyda2 248 FAAINTVTDIGPIIVIGVGAYLAIS-GSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 1111101205589999999999984-9988999999999999999999999999999999999999999997799
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.86 E-value=2.4e-22 Score=190.92 Aligned_cols=123 Identities=24% Similarity=0.380 Sum_probs=110.5
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 66099998899847999984226228860996999987999648999999931548999779996963899994788501
Q 000680 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292 (1354)
Q Consensus 1213 ~G~Ief~nvsfrY~~~~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LRs~ 1292 (1354)
.+.|+|+|+++.+ .|||+||||+|++||++||||++|||||||+++|.|+++|++|+|.+|| +
T Consensus 36 ~~~i~~~~~~~~g----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 36 ENNVSFSHLCLVG----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ----CHHHHHHTT----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCCEEEEECCCCC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 8967999769899----7677375999859999999989998299999999579747882899999-------------9
Q ss_pred CCEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCC----CCCCCCCC
Q ss_conf 9064466522345415514999999999999999984980588307777678----88644442
Q 000680 1293 LSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS----SGKLFSAA 1352 (1354)
Q Consensus 1293 isiIpQdp~LF~GTIR~NLdp~~~~tDeeI~~AL~~a~l~~~I~~Lp~gldt----~G~n~s~~ 1352 (1354)
++++||+|.+|+||||+|+.....+++.+++++++.+++.+++..+|+++++ .|.++|-|
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgG 162 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGG 162 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHH
T ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHH
T ss_conf 9998164302676032142033345605799999997769999846123323555542377999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.83 E-value=1.5e-20 Score=176.58 Aligned_cols=122 Identities=21% Similarity=0.423 Sum_probs=108.3
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCCE
Q ss_conf 99998899847999984226228860996999987999648999999931548999779996963899994788501906
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 Ief~nvsfrY~~~~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LRs~isi 1295 (1354)
|+++|++.+|.. .+|+||||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.||++++.. |+++++
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred ECCCCCCCCC-CHHHHCC----CCCCCCHHHHHHHHHHCCCCHHHHCCCCCC
Q ss_conf 4466522345-4155149----999999999999999849805883077776
Q 000680 1296 IPQEPTLFRG-SVRTNLD----PLGLYSDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1296 IpQdp~LF~G-TIR~NLd----p~~~~tDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
|||+|.||.. |+++|+. ..+.-.++++.++++..++.++.+..|..|
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 128 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTL 128 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGS
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCHHHC
T ss_conf 5121111746657788888776405538999999999825655575895547
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.5e-20 Score=176.64 Aligned_cols=132 Identities=23% Similarity=0.270 Sum_probs=111.8
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCCE
Q ss_conf 99998899847999984226228860996999987999648999999931548999779996963899994788501906
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 Ief~nvsfrY~~~~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LRs~isi 1295 (1354)
|+++||+++|.+ ..+|+||||+|++||.+||+|++|||||||++++.|+..|++|+|.+||.||++.+.. |++|++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEEE
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEEE
T ss_conf 999999999899--9998111778869989999989998299999999658788888899999977888644--432223
Q ss_pred ECCCCCCCCC-CHHHHCCCCCC---C----CHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 4466522345-41551499999---9----99999999998498058830777767888644442
Q 000680 1296 IPQEPTLFRG-SVRTNLDPLGL---Y----SDDEIWKALEKCQLKTTISSLPNKLDSSGKLFSAA 1352 (1354)
Q Consensus 1296 IpQdp~LF~G-TIR~NLdp~~~---~----tDeeI~~AL~~a~l~~~I~~Lp~gldt~G~n~s~~ 1352 (1354)
|||+|.||.. |+++|+..... . .++.+.++++.+++.++....|..| ++|..-+++
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~L-SGGqkQRva 140 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL-SGGQRQRVA 140 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC----------------------C
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHC-CHHHHHHHH
T ss_conf 4334202643337889789998759988999999999997578865664896569-999999999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.83 E-value=1.7e-20 Score=176.10 Aligned_cols=130 Identities=23% Similarity=0.341 Sum_probs=110.9
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCC
Q ss_conf 09999889984799998422622886099699998799964899999993154899977999696389999478850190
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~Ief~nvsfrY~~~~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LRs~is 1294 (1354)
.|+++|++.+|. + ..+|+||||+|++||.+||+|++|||||||++++.|++.|++|+|.+||.|+++++.+ |++++
T Consensus 6 ~I~v~nlsk~yg-~-~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFG-N-FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEET-T-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred EEEEEEEEEEEC-C-EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf 499987999999-9-9998130678879989999999998299999999758999878799916413547700--01589
Q ss_pred EECCCCCCCCC-CHHHHCCCCC---CCCH----HHHHHHHHHCCCCHHHHCCCCCCCCCCCCC
Q ss_conf 64466522345-4155149999---9999----999999998498058830777767888644
Q 000680 1295 IIPQEPTLFRG-SVRTNLDPLG---LYSD----DEIWKALEKCQLKTTISSLPNKLDSSGKLF 1349 (1354)
Q Consensus 1295 iIpQdp~LF~G-TIR~NLdp~~---~~tD----eeI~~AL~~a~l~~~I~~Lp~gldt~G~n~ 1349 (1354)
+|||+|.||.. |+++|+.... ..+. +.+.++|+.+++.++....|..| ++|..=
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L-SGGq~Q 143 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQL-SGGQRQ 143 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTC-CSSCHH
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHC-CHHHHH
T ss_conf 98003353422209999999998739999999999999998759855660995469-999988
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=2.5e-20 Score=174.84 Aligned_cols=132 Identities=26% Similarity=0.420 Sum_probs=110.6
Q ss_pred EEEEEEEEEECCCCC--CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 999988998479999--8422622886099699998799964899999993154899977999696389999478---85
Q 000680 1216 IELRQLKIRYRPNAP--LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LR 1290 (1354)
Q Consensus 1216 Ief~nvsfrY~~~~~--~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~---LR 1290 (1354)
|+++|++..|..+.. .||+||||+|++||.+||+|+||||||||+++|.++.+|++|+|.+||.|+.+.+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCCCEECCCCCCCCC-CHHHHCC-C---CCC---CCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCC
Q ss_conf 019064466522345-4155149-9---999---99999999999849805883077776788864
Q 000680 1291 VKLSIIPQEPTLFRG-SVRTNLD-P---LGL---YSDDEIWKALEKCQLKTTISSLPNKLDSSGKL 1348 (1354)
Q Consensus 1291 s~isiIpQdp~LF~G-TIR~NLd-p---~~~---~tDeeI~~AL~~a~l~~~I~~Lp~gldt~G~n 1348 (1354)
+++++|||||.||.. |+++|+. | .+. ..++.+.++|+++++.++....|..| ++|..
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~L-SGG~~ 146 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL-SGGQK 146 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCC-CHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHC-CHHHH
T ss_conf 166430225222799649999999999849998999999999999769903554894349-99999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.82 E-value=9.1e-20 Score=170.32 Aligned_cols=131 Identities=26% Similarity=0.429 Sum_probs=107.1
Q ss_pred EEEEEEEEEECCCCC--CCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 999988998479999--84226228860996999987999648999999931548999779996963899994788----
Q 000680 1216 IELRQLKIRYRPNAP--LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL---- 1289 (1354)
Q Consensus 1216 Ief~nvsfrY~~~~~--~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~L---- 1289 (1354)
|+++||+++|+.+.. .+|+||||+|++||.+||+|+||||||||++++.++..|++|+|.+||.||.+++.+.+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCCCEECCCCCCCCC-CHHHHCC----C--CCCCCH----HHHHHHHHHCCCCH-HHHCCCCCCCCCCC
Q ss_conf 5019064466522345-4155149----9--999999----99999999849805-88307777678886
Q 000680 1290 RVKLSIIPQEPTLFRG-SVRTNLD----P--LGLYSD----DEIWKALEKCQLKT-TISSLPNKLDSSGK 1347 (1354)
Q Consensus 1290 Rs~isiIpQdp~LF~G-TIR~NLd----p--~~~~tD----eeI~~AL~~a~l~~-~I~~Lp~gldt~G~ 1347 (1354)
|++|++|||+|.||.. |+++|+. + .+..+. +++.+.|+.+++.+ +....|..| ++|.
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~L-SGGq 150 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQL-SGGQ 150 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGS-CHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCHHHC-CHHH
T ss_conf 55577880412417686688877578887224789999999999998876242345534880238-9999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.82 E-value=6e-21 Score=179.72 Aligned_cols=133 Identities=21% Similarity=0.393 Sum_probs=112.9
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHC
Q ss_conf 09999889984799998422622886099699998799964899999993154899977999696389999---478850
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDLRV 1291 (1354)
Q Consensus 1215 ~Ief~nvsfrY~~~~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~---l~~LRs 1291 (1354)
.|+++|++.+|+.+.-.+|+||||+|++||.+||+|+||||||||+++|.|+..|++|+|.+||.|+.+.+ +...|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CCCEECCCCCCCCC-CHHHHCC-CCC--CCC----HHHHHHHHHHCCCCHHHHCCCCCCCCCCCC
Q ss_conf 19064466522345-4155149-999--999----999999999849805883077776788864
Q 000680 1292 KLSIIPQEPTLFRG-SVRTNLD-PLG--LYS----DDEIWKALEKCQLKTTISSLPNKLDSSGKL 1348 (1354)
Q Consensus 1292 ~isiIpQdp~LF~G-TIR~NLd-p~~--~~t----DeeI~~AL~~a~l~~~I~~Lp~gldt~G~n 1348 (1354)
++++|||+|.||.. |+++|+. |.. ..+ ++.+.++++.+++.++....|..| ++|..
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~L-SGGqk 146 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPREL-SGAQQ 146 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGS-CHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHC-CHHHH
T ss_conf 51477304334666657777665567613799999999999986659176664895459-99998
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.80 E-value=4.8e-20 Score=172.53 Aligned_cols=130 Identities=19% Similarity=0.262 Sum_probs=108.9
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 09999889984799998422622886099699998799964899999993154899977999696389999478----85
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD----LR 1290 (1354)
Q Consensus 1215 ~Ief~nvsfrY~~~~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~----LR 1290 (1354)
.|+++||+.+|.. ..+|+||||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.|+.+.+.+. .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred CCCCEECCCCCCCCC-CHHHHCCCC---CCCC----HHHHHHHHHHCCCCHHHHCCCCCCCCCCC
Q ss_conf 019064466522345-415514999---9999----99999999984980588307777678886
Q 000680 1291 VKLSIIPQEPTLFRG-SVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSGK 1347 (1354)
Q Consensus 1291 s~isiIpQdp~LF~G-TIR~NLdp~---~~~t----DeeI~~AL~~a~l~~~I~~Lp~gldt~G~ 1347 (1354)
+++++|||+|.||.. |+++|+... ...+ ++.+.++++.+++.++....|..| ++|.
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~L-SGGq 144 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPREL-SGGQ 144 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGS-CHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHC-CHHH
T ss_conf 551200221222310116676330687729998999999999998759966762993349-9999
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=8.4e-19 Score=162.65 Aligned_cols=126 Identities=25% Similarity=0.402 Sum_probs=106.0
Q ss_pred CEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCC
Q ss_conf 60999988998479999842262288609969999879996489999999315489997799969638999947885019
Q 000680 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1354)
Q Consensus 1214 G~Ief~nvsfrY~~~~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LRs~i 1293 (1354)
|.|+++|++.+|.. ..||+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.++|.|+.+. .+.+|+++
T Consensus 1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred CCEEEEEEEEEECC--EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHHE
T ss_conf 97899958999999--9998062568848979999999999999999999669887888799986724468-39887218
Q ss_pred CEECCCCCCCCC-CHHHHCCCCC---CCCHH----HHHHHHHHCCCCHHHHCCCCCC
Q ss_conf 064466522345-4155149999---99999----9999999849805883077776
Q 000680 1294 SIIPQEPTLFRG-SVRTNLDPLG---LYSDD----EIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1294 siIpQdp~LF~G-TIR~NLdp~~---~~tDe----eI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
+++||++.+|.. |+++|+..+. ..+++ .+.++++.+++.+.....+..|
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l 134 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTY 134 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGC
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 675001546878667788898998617998999999999998679788885045337
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.77 E-value=1.7e-19 Score=168.13 Aligned_cols=130 Identities=28% Similarity=0.454 Sum_probs=107.1
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--------
Q ss_conf 099998899847999984226228860996999987999648999999931548999779996963899994--------
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL-------- 1286 (1354)
Q Consensus 1215 ~Ief~nvsfrY~~~~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l-------- 1286 (1354)
.|+++|++.+|.. ..||+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.||...+.
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899--99881506688699799999899982999999997476678997799999933677520000235
Q ss_pred -----HHHHCCCCEECCCCCCCCC-CHHHHCC--C--CCCCC----HHHHHHHHHHCCCCHHHH-CCCCCCCCCCC
Q ss_conf -----7885019064466522345-4155149--9--99999----999999999849805883-07777678886
Q 000680 1287 -----KDLRVKLSIIPQEPTLFRG-SVRTNLD--P--LGLYS----DDEIWKALEKCQLKTTIS-SLPNKLDSSGK 1347 (1354)
Q Consensus 1287 -----~~LRs~isiIpQdp~LF~G-TIR~NLd--p--~~~~t----DeeI~~AL~~a~l~~~I~-~Lp~gldt~G~ 1347 (1354)
...|+++++|||+|.+|.. |+++|+. | ....+ ++.+.++++++++.+... ..|..| ++|.
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~L-SGG~ 154 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL-SGGQ 154 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGS-CHHH
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCC-CHHH
T ss_conf 17679997454489983323141101021365657876299989999999999998299524430682205-6778
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.77 E-value=1.2e-18 Score=161.46 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=101.4
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC-C
Q ss_conf 099998899847999984226228860996999987999648999999931548999779996963899994788501-9
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK-L 1293 (1354)
Q Consensus 1215 ~Ief~nvsfrY~~~~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LRs~-i 1293 (1354)
-++++|++.+|.. . .||+||||++++||.+||+|++|||||||+++|.+++.|++|+|.+||.|+...+.+++++. +
T Consensus 4 iL~v~nlsk~yg~-~-~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE-F-KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT-E-EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECC-E-EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 6999778999799-6-8871217998899799999999984999999997797688737999999664056999998338
Q ss_pred CEECCCCCCCCC-CHHHHCCCC----------------CCCCH----HHHHHHHHHCCCCHHHHCCC
Q ss_conf 064466522345-415514999----------------99999----99999999849805883077
Q 000680 1294 SIIPQEPTLFRG-SVRTNLDPL----------------GLYSD----DEIWKALEKCQLKTTISSLP 1339 (1354)
Q Consensus 1294 siIpQdp~LF~G-TIR~NLdp~----------------~~~tD----eeI~~AL~~a~l~~~I~~Lp 1339 (1354)
+++||+|.+|.+ |+++|+--. ....+ ++..++++..++.+.....+
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH
T ss_conf 7257764247887423214301333034504566542135328999999999987619630205953
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.75 E-value=3.2e-18 Score=158.04 Aligned_cols=97 Identities=29% Similarity=0.477 Sum_probs=88.7
Q ss_pred CEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 609999889984799998422622886099699998799964899999993154899977999696389999478850-1
Q 000680 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV-K 1292 (1354)
Q Consensus 1214 G~Ief~nvsfrY~~~~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LRs-~ 1292 (1354)
--++++|++.+|.. ..+|+||||+|++||.+||+|++|||||||+++|.+++.|++|+|.+||.|+.+.+.+..++ .
T Consensus 5 ~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 07999618999899--8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred CCEECCCCCCCCC-CHHHHCC
Q ss_conf 9064466522345-4155149
Q 000680 1293 LSIIPQEPTLFRG-SVRTNLD 1312 (1354)
Q Consensus 1293 isiIpQdp~LF~G-TIR~NLd 1312 (1354)
++++||++.+|.. |+++|+.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~ 103 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLM 103 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHH
T ss_conf 355676554577636999999
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.72 E-value=1.7e-17 Score=152.22 Aligned_cols=112 Identities=32% Similarity=0.473 Sum_probs=99.5
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCC
Q ss_conf 09999889984799998422622886099699998799964899999993154899977999696389999478850190
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~Ief~nvsfrY~~~~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LRs~is 1294 (1354)
.||++|++++|+ . +||+|+||+|++||.+||+|++|||||||+++|.+++.|++|+|.+||.++.+ .|.+++
T Consensus 2 ~lev~~ls~~y~--~-~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS--S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEE
T ss_pred EEEEEEEEEEEC--C-EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCEE
T ss_conf 599998999939--9-28842088985998999999999719999999966205677889999896267-----367089
Q ss_pred EECCCCCCCCC-CHHHHCC-----CCCCCCHHHHHHHHHHCCCCHH
Q ss_conf 64466522345-4155149-----9999999999999998498058
Q 000680 1295 IIPQEPTLFRG-SVRTNLD-----PLGLYSDDEIWKALEKCQLKTT 1334 (1354)
Q Consensus 1295 iIpQdp~LF~G-TIR~NLd-----p~~~~tDeeI~~AL~~a~l~~~ 1334 (1354)
++||++.++.. |+++|+. .....++++++++++..++.+.
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 119 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL 119 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 9950135788828999999999754886379999999987488563
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.66 E-value=2.3e-16 Score=143.26 Aligned_cols=119 Identities=23% Similarity=0.410 Sum_probs=97.4
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCCE
Q ss_conf 99998899847999984226228860996999987999648999999931548999779996963899994788501906
Q 000680 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1354)
Q Consensus 1216 Ief~nvsfrY~~~~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LRs~isi 1295 (1354)
+++ ++.-+|.. ..+ ||||+++ +|.+||+|++|||||||+++|.|+.+|++|+|.+||.|+.+++.+ |++|++
T Consensus 3 l~v-~~~k~~g~---~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGN---FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETT---EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECC---EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-99999899---999-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred ECCCCCCCCC-CHHHHCCC-CCCCC----HHHHHHHHHHCCCCHHHHCCCCCC
Q ss_conf 4466522345-41551499-99999----999999999849805883077776
Q 000680 1296 IPQEPTLFRG-SVRTNLDP-LGLYS----DDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1296 IpQdp~LF~G-TIR~NLdp-~~~~t----DeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
|||+|.||.. |+++|+.. ....+ ++.+.++++.+++.++....|..|
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~L 127 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARL 127 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGS
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHC
T ss_conf 52314435220155766653233677889999999998638375665794448
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=7.9e-15 Score=131.01 Aligned_cols=121 Identities=19% Similarity=0.258 Sum_probs=101.0
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCC
Q ss_conf 09999889984799998422622886099699998799964899999993154899977999696389999478850190
Q 000680 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1354)
Q Consensus 1215 ~Ief~nvsfrY~~~~~~VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LRs~is 1294 (1354)
-++++||+.+| +|++|||+|++||.+||+|++|||||||+++|.|+. |.+|+|.++|.|+...+.+.++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EECCCCCC-CCCCHHHHCCC--CCCCCHHHHHHHHHHCCCCHHHHCCCCCC
Q ss_conf 64466522-34541551499--99999999999999849805883077776
Q 000680 1295 IIPQEPTL-FRGSVRTNLDP--LGLYSDDEIWKALEKCQLKTTISSLPNKL 1342 (1354)
Q Consensus 1295 iIpQdp~L-F~GTIR~NLdp--~~~~tDeeI~~AL~~a~l~~~I~~Lp~gl 1342 (1354)
+++|+... |..++.+|+.. ......+.+.++++..++.++....+..|
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L 126 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQL 126 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGC
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHC
T ss_conf 451213577442098876410014668999999998659876767684456
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.14 E-value=2.5e-12 Score=111.14 Aligned_cols=146 Identities=14% Similarity=0.070 Sum_probs=98.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--EEEEEC-----------CCCCCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf 89998799988778998882986588738999191--999807-----------88789875889972399999899999
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQ-----------TSWIQSGSIRDNILYGKPMDKARYDK 691 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~--iayv~Q-----------~pwi~~~TireNIlfg~~~d~~~y~~ 691 (1354)
.++|+||+|||||||+++|+|++++..|.+.+.+. ..+-.| .+.....+..++..+++
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS--------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT---------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302---------
Q ss_pred HHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CC
Q ss_conf 9999510798821899996312688887794899999999998049989998287888699999999999997814--99
Q 000680 692 AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EK 769 (1354)
Q Consensus 692 vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAvy~~~di~lLDdp~salD~~~~~~if~~~i~~~l--~~ 769 (1354)
..+......+++|+++|.+++++..++++++++|||....+. .+... ..+...+ .+
T Consensus 73 -------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~-~~l~~~l~~~~ 130 (178)
T d1ye8a1 73 -------------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFR-DLVRQIMHDPN 130 (178)
T ss_dssp -------------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHH-HHHHHHHTCTT
T ss_pred -------------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHH-HHHHHHHCCCC
T ss_conf -------------------303762566532013789999997409974230277731004--57999-99998750579
Q ss_pred CEEEEECCCCCHHHHCCEEEEEECCEEEEECC
Q ss_conf 58999748943152029799993984889338
Q 000680 770 KTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1354)
Q Consensus 770 kT~Ilvth~~~~l~~~d~i~~l~~G~i~~~G~ 801 (1354)
+|+|+++|+....+.+|++..+++|++.+.+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.60 E-value=1.5e-06 Score=64.96 Aligned_cols=76 Identities=22% Similarity=0.289 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHHHHHH----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCEEEE--E
Q ss_conf 877948999999999980----4998999828788869999999999999781499589997489431520297999--9
Q 000680 718 LNLSGGQKQRIQLARAVY----NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILV--L 791 (1354)
Q Consensus 718 ~~LSGGQkqRi~LARAvy----~~~di~lLDdp~salD~~~~~~if~~~i~~~l~~kT~Ilvth~~~~l~~~d~i~~--l 791 (1354)
..+|+|||+...++.... ..+.+++.|||=++||+...+.+.+ .+....++.-+|++||.+.++..+|+++. +
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~-~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCCEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999-99985548879999898899973242899999
Q ss_pred ECC
Q ss_conf 398
Q 000680 792 EGG 794 (1354)
Q Consensus 792 ~~G 794 (1354)
++|
T Consensus 297 ~~g 299 (308)
T d1e69a_ 297 VNG 299 (308)
T ss_dssp SSS
T ss_pred ECC
T ss_conf 699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=8.1e-06 Score=59.22 Aligned_cols=72 Identities=18% Similarity=0.295 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHCCEEEEE
Q ss_conf 7794899999999998----049989998287888699999999999997814-995899974894315202979999
Q 000680 719 NLSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVL 791 (1354)
Q Consensus 719 ~LSGGQkqRi~LARAv----y~~~di~lLDdp~salD~~~~~~if~~~i~~~l-~~kT~Ilvth~~~~l~~~d~i~~l 791 (1354)
.||||||.+++||-.+ +.++.+++||||.+++|+.....+.+. +.... .+.-+|++||+++++..||+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~-l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAY-IRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHH-HHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999-999728998899995878999736617999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.76 E-value=1.7e-06 Score=64.68 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=55.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCCEECCCCCCCCCCHHHHC
Q ss_conf 9999879996489999999315489997799969638999947885019064466522345415514
Q 000680 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL 1311 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LRs~isiIpQdp~LF~GTIR~NL 1311 (1354)
||+|+|++|||||||++.+.+.+.+..|.+.++|++....+.+.........++.+.++..+...+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKK 68 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSS
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999989993899999999814888864699877132888876531123366777887541134554
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.84 E-value=0.00057 Score=44.51 Aligned_cols=37 Identities=30% Similarity=0.637 Sum_probs=29.2
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 5088089998799988778998882986588738999
Q 000680 620 IKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL 656 (1354)
Q Consensus 620 i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~ 656 (1354)
++.|.-+.|+|++||||||+++++++++++..=-+.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9837888999403566257899986530145623311
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.02 Score=32.28 Aligned_cols=125 Identities=26% Similarity=0.295 Sum_probs=65.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHH
Q ss_conf 80899987999887789988829865887389991919998078878987588997239999989999999995107988
Q 000680 623 AQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDI 702 (1354)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~~~d~~~y~~vi~ac~L~~dl 702 (1354)
|=.++++|++|+|||||++++.|.-... ++..| ++.++.+......
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~------------~~~~~----~~~~~~~~~~~~~------------------ 46 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAI------------VTDIA----GTTRDVLREHIHI------------------ 46 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSST----TCCCSCEEEEEEE------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEE------------EECCC----CCCCCEEEEEEEC------------------
T ss_conf 9899998999998999999996888667------------51246----6422047653202------------------
Q ss_pred HCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 218999963126888--877948999999999980499899982878886999999999999978149958999748943
Q 000680 703 NNFDHGDLTEIGQRG--LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE 780 (1354)
Q Consensus 703 ~~lp~GD~T~IGe~G--~~LSGGQkqRi~LARAvy~~~di~lLDdp~salD~~~~~~if~~~i~~~l~~kT~Ilvth~~~ 780 (1354)
++.....+...| ..-.+.++..+..+...|.++|+++++-..+.-+.....+.+...+.....++.+|+|-+..+
T Consensus 47 ---~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~D 123 (161)
T d2gj8a1 47 ---DGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 123 (161)
T ss_dssp ---TTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred ---CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHH
T ss_conf ---68235413653212246520247899999998741332011025654203455544455542014101020465444
Q ss_pred HHHH
Q ss_conf 1520
Q 000680 781 FLSE 784 (1354)
Q Consensus 781 ~l~~ 784 (1354)
..+.
T Consensus 124 l~~~ 127 (161)
T d2gj8a1 124 ITGE 127 (161)
T ss_dssp HHCC
T ss_pred HHHH
T ss_conf 3355
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.35 E-value=0.03 Score=30.82 Aligned_cols=126 Identities=16% Similarity=0.223 Sum_probs=69.7
Q ss_pred CCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHH--------CCC-CCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCC
Q ss_conf 7311266885088089998799988778998882--------986-5887389991919998078878987588997239
Q 000680 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL--------GEI-PKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYG 681 (1354)
Q Consensus 611 ~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~il--------Ge~-~~~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg 681 (1354)
.+=.|+.+ . ++...|+||+.+||||+|+.+. |-. +..+.++.....|-. .....|++.-|
T Consensus 26 ~VpNdi~~--~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d~I~~--------~~~~~d~~~~~ 94 (224)
T d1ewqa2 26 FVPNDLEM--A-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYT--------RIGASDDLAGG 94 (224)
T ss_dssp CCCEEEEE--S-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEE--------ECCC------C
T ss_pred EECCEEEE--C-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCCEEEEECCEEEE--------EECCCCCCCCC
T ss_conf 54555884--7-8679997887345323455658999998525046137519940116999--------98777602378
Q ss_pred CCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 99998999999999510798821899996312688887794899999999998049989998287888699999999999
Q 000680 682 KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761 (1354)
Q Consensus 682 ~~~d~~~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAvy~~~di~lLDdp~salD~~~~~~if~~ 761 (1354)
.. .+ ..+-+|++-.----.+..++|+||..++-|+.-+..+...
T Consensus 95 ~S----tF--------------------------------~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~a 138 (224)
T d1ewqa2 95 KS----TF--------------------------------MVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATA 138 (224)
T ss_dssp CS----HH--------------------------------HHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHH
T ss_pred CC----HH--------------------------------HHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHH
T ss_conf 30----78--------------------------------9867889877502897727855454568623320025888
Q ss_pred HHHHHC-CCCEEEEECCCCCHHH
Q ss_conf 997814-9958999748943152
Q 000680 762 CVMAAL-EKKTVILVTHQVEFLS 783 (1354)
Q Consensus 762 ~i~~~l-~~kT~Ilvth~~~~l~ 783 (1354)
++..+. ++.+.+++||..+...
T Consensus 139 ile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 139 VAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp HHHHHHHHTCEEEEECCCHHHHT
T ss_pred HHHHHHHCCCCEEEEEECHHHHH
T ss_conf 88888623761378652023332
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.94 E-value=0.045 Score=29.36 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=73.7
Q ss_pred CCEEEEEEEEEECC----CCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHH--------CCC-CCCCCEEEECCE
Q ss_conf 84899843797279----99887311266885088089998799988778998882--------986-588738999191
Q 000680 593 RSVKIQEGNFSWDP----ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL--------GEI-PKISGTVNLYGS 659 (1354)
Q Consensus 593 ~~I~~~~~~f~w~~----~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~il--------Ge~-~~~~G~v~~~g~ 659 (1354)
..+.++++.= |- ..+.++=.|++++ +.+....|+||+.|||||+|+++. |-. +..+.++....+
T Consensus 10 ~~l~i~~~rH--Plle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d~ 86 (234)
T d1wb9a2 10 PGIRITEGRH--PVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDR 86 (234)
T ss_dssp SCEEEEEECC--TTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCE
T ss_pred CCEEEEEEEC--CEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEECCCCHH
T ss_conf 9689997378--7797446998264057988-995399995467313689999879999998729767417666134420
Q ss_pred EEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99980788789875889972399999899999999951079882189999631268888779489999999999804998
Q 000680 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 660 iayv~Q~pwi~~~TireNIlfg~~~d~~~y~~vi~ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAvy~~~d 739 (1354)
|- ......|++.-|.- -=..+-+|++-.----.+..
T Consensus 87 I~--------~~~~~~d~~~~~~S------------------------------------~F~~E~~~~~~il~~~~~~s 122 (234)
T d1wb9a2 87 IF--------TRVGAADDLASGRS------------------------------------TFMVEMTETANILHNATEYS 122 (234)
T ss_dssp EE--------EEEC-----------------------------------------------CHHHHHHHHHHHHHCCTTE
T ss_pred HE--------EEECCCCCCCCCHH------------------------------------HHHHHHHHHHHHHHHCCCCC
T ss_conf 23--------48746753436531------------------------------------89999999999997454660
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHC-C-CCEEEEECCCCCHH
Q ss_conf 9998287888699999999999997814-9-95899974894315
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAAL-E-KKTVILVTHQVEFL 782 (1354)
Q Consensus 740 i~lLDdp~salD~~~~~~if~~~i~~~l-~-~kT~Ilvth~~~~l 782 (1354)
++|+||+.++-++.-+..+....+..+. + +..++++||.....
T Consensus 123 LvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 123 LVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp EEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 885322235877456667898764543204544289852468776
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.65 E-value=0.0056 Score=36.58 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089998799988778998882986
Q 000680 624 QKIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
=.++|+|.+|+|||||+++++|.-
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 889999999999999999997787
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.61 E-value=0.027 Score=31.19 Aligned_cols=114 Identities=25% Similarity=0.263 Sum_probs=71.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 088089998799988778998882986588738-9991919998078878987588997239999989999999995107
Q 000680 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT-VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALD 699 (1354)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~-v~~~g~iayv~Q~pwi~~~TireNIlfg~~~d~~~y~~vi~ac~L~ 699 (1354)
.++-++.|+||+||||||.+.+++.+++..... +.+...+-|.-
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~----------------------------------- 200 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI----------------------------------- 200 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC-----------------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC-----------------------------------
T ss_conf 410548987678777447799986662578746999626743456-----------------------------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 98821899996312688887794899999999998049989998287888699999999999997814995899974894
Q 000680 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1354)
Q Consensus 700 ~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAvy~~~di~lLDdp~salD~~~~~~if~~~i~~~l~~kT~Ilvth~~ 779 (1354)
|+--+++|.++ .|+.---+|..++=+|||+++..|.- |..+++..++ ....|..|+-.-|-.
T Consensus 201 ------~~~~q~~v~~~-----~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~----aa~tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 201 ------DGIGQTQVNPR-----VDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQ----ASLTGHLVMSTLHTN 262 (401)
T ss_dssp ------SSSEEEECBGG-----GTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHH----HHHTTCEEEEEECCS
T ss_pred ------CCCCEEEECCC-----CCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHH----HHHCCCEEEEEECCC
T ss_conf ------78870265587-----67799999999984138889845768---7599999999----972498589983367
Q ss_pred CHHHHCCE
Q ss_conf 31520297
Q 000680 780 EFLSEVDR 787 (1354)
Q Consensus 780 ~~l~~~d~ 787 (1354)
+-..-.++
T Consensus 263 ~a~~~~~R 270 (401)
T d1p9ra_ 263 TAVGAVTR 270 (401)
T ss_dssp SSHHHHHH
T ss_pred CHHHHHHH
T ss_conf 66766543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.53 E-value=0.0065 Score=36.09 Aligned_cols=34 Identities=32% Similarity=0.302 Sum_probs=28.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8808999879998877899888298658873899
Q 000680 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1354)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~ 655 (1354)
+|+.++++|++|.|||||+++|+|+.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.52 E-value=0.0045 Score=37.33 Aligned_cols=28 Identities=36% Similarity=0.552 Sum_probs=23.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 8999879998877899888298658873
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIPKISG 652 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~~~~G 652 (1354)
-++|+|++|+|||||+++|+|.-....|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7999899999789999999588867775
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.36 E-value=0.0082 Score=35.30 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99699998799964899999993154899
Q 000680 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPA 1270 (1354)
Q Consensus 1242 ~GekVgIVGrTGSGKSTL~~~L~Rl~e~~ 1270 (1354)
+|++..++|.||.|||||+++|..=.+..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~ 122 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR 122 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH
T ss_conf 69808997889877888877305355501
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.30 E-value=0.074 Score=27.67 Aligned_cols=147 Identities=12% Similarity=0.071 Sum_probs=71.7
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECC-CCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 50880899987999887789988829865887389991919998078-87898758899723999998999999999510
Q 000680 620 IKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT-SWIQSGSIRDNILYGKPMDKARYDKAIKACAL 698 (1354)
Q Consensus 620 i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~-pwi~~~TireNIlfg~~~d~~~y~~vi~ac~L 698 (1354)
+++|+++.|.|++|||||++..-++-......+ .+.|++-+ +- ...++.---+|. +.+.+
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~------~~~~is~e~~~--~~~~~~~~~~~~--~~~~~--------- 83 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACANKE------RAILFAYEESR--AQLLRNAYSWGM--DFEEM--------- 83 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC------CEEEEESSSCH--HHHHHHHHTTSC--CHHHH---------
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC------CCCEEECCCCH--HHHHHHHHHCCC--CHHHH---------
T ss_conf 869849999918999999999999999987232------44112126799--999999998299--86998---------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCC---CHHHHHHHHHHHHHHH-CCCCEEE
Q ss_conf 7988218999963126888877948999999999980-499899982878886---9999999999999781-4995899
Q 000680 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY-NDADIYLFDDPFSAV---DAHTAATLFNECVMAA-LEKKTVI 773 (1354)
Q Consensus 699 ~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAvy-~~~di~lLDdp~sal---D~~~~~~if~~~i~~~-l~~kT~I 773 (1354)
...|....+........ .+...-.+.+++. .++++.+.|...... +............... ..+.|++
T Consensus 84 ------~~~~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 156 (242)
T d1tf7a2 84 ------ERQNLLKIVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGL 156 (242)
T ss_dssp ------HHTTSEEECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ------HHCCCEEEEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf ------54586179973000101-79999999999984088533220431430489999999999999999998698399
Q ss_pred EECCCCC----------HH-HHCCEEEEEE
Q ss_conf 9748943----------15-2029799993
Q 000680 774 LVTHQVE----------FL-SEVDRILVLE 792 (1354)
Q Consensus 774 lvth~~~----------~l-~~~d~i~~l~ 792 (1354)
++.|... .+ ..+|.++.++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 157 FTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp EEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred EEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 998567512554457764046421699999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.23 E-value=0.0058 Score=36.46 Aligned_cols=23 Identities=48% Similarity=0.645 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++++|++|+|||||+++|+|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.15 E-value=0.0058 Score=36.48 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++|+|++|+|||||+++|.|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.85 E-value=0.0081 Score=35.35 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88089998799988778998882986
Q 000680 622 WAQKIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.|++++++|++||||||+.+++..++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.83 E-value=0.098 Score=26.70 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=34.1
Q ss_pred CCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEEC
Q ss_conf 7311266885088089998799988778998882986588738999191999807
Q 000680 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ 665 (1354)
Q Consensus 611 ~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q 665 (1354)
|.|.+..--+.+|+++.|.|++|+|||+++.-+.--+-...| .++.|++-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g-----~~v~~~s~ 72 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-----KKVGLAML 72 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC-----CCEEEEES
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-----CCEEEEEE
T ss_conf 668887469789808999947999799999999972655336-----63457640
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.66 E-value=0.015 Score=33.09 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHH
Q ss_conf 688508808999879998877899888
Q 000680 617 NLDIKWAQKIAVCGSVGAGKSSLLYAI 643 (1354)
Q Consensus 617 ~l~i~~G~~~~ivG~~GsGKStLl~~i 643 (1354)
++++..+.+++|+|++|||||+++.||
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi 45 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAI 45 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHH
T ss_pred EEECCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 975899998999999999889999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.49 E-value=0.026 Score=31.27 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=25.4
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8850880899987999887789988829865
Q 000680 618 LDIKWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 618 l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
+.-++|..+-++|.+||||||+.+.+.-.+.
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~ 49 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 49 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8589986999989999998999999998877
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.42 E-value=0.0063 Score=36.22 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=24.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 808999879998877899888298658
Q 000680 623 AQKIAVCGSVGAGKSSLLYAILGEIPK 649 (1354)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~ilGe~~~ 649 (1354)
|++++++||+||||+|+.+.+..+.+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.34 E-value=0.012 Score=33.86 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
-++++|++|+|||||+++|.|+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.29 E-value=0.011 Score=34.32 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=27.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 8999879998877899888298658873899919199980788
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS 667 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~p 667 (1354)
.++|+|+.|||||||++.|+.++....- +++++..++
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~------~v~v~~~d~ 40 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGI------RPGLIKHTH 40 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC------CEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC------EEEEECCCC
T ss_conf 8999918999899999999999997797------687741466
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.21 E-value=0.024 Score=31.62 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 808999879998877899888298
Q 000680 623 AQKIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.+++.++|++||||||+.+.|..+
T Consensus 2 kklIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 2 KKIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 879999899999999999999995
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.19 E-value=0.015 Score=33.15 Aligned_cols=91 Identities=23% Similarity=0.281 Sum_probs=54.9
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCCEECCCCC----CCCCCHHHHCC
Q ss_conf 28860996999987999648999999931548999779996963899994788501906446652----23454155149
Q 000680 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT----LFRGSVRTNLD 1312 (1354)
Q Consensus 1237 sl~I~~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LRs~isiIpQdp~----LF~GTIR~NLd 1312 (1354)
..-++.|..+-|+|+|||||||++++|++.+++..=-|.|. |-.++.+..-++.+..-.+..+ +....+|.+-|
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE--d~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd 237 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE--DTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPD 237 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE--SSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCS
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEECC--CHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 99998378889994035662578999865301456233113--2265511112454100146542499999997434998
Q ss_pred C--CCCCCHHHHHHHHHHC
Q ss_conf 9--9999999999999984
Q 000680 1313 P--LGLYSDDEIWKALEKC 1329 (1354)
Q Consensus 1313 p--~~~~tDeeI~~AL~~a 1329 (1354)
. .++.-+.|.+++++.+
T Consensus 238 ~iivgEiR~~ea~~~l~a~ 256 (323)
T d1g6oa_ 238 RIILGELRSSEAYDFYNVL 256 (323)
T ss_dssp EEEESCCCSTHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHH
T ss_conf 5457866746599999999
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.99 E-value=0.012 Score=33.99 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
-++|+|+.++|||||++++.|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.95 E-value=0.0078 Score=35.44 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=28.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8808999879998877899888298658873899
Q 000680 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1354)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~ 655 (1354)
+|+.++++|++|.|||||+++|+|+.....|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.86 E-value=0.014 Score=33.52 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799988778998882986
Q 000680 626 IAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 626 ~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
++++|.+++|||||++++.|+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.86 E-value=0.012 Score=34.04 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=31.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE----------EECCEECCCCCHHHHHC
Q ss_conf 96999987999648999999931548999779----------99696389999478850
Q 000680 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSI----------LIDGVDICSMGLKDLRV 1291 (1354)
Q Consensus 1243 GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I----------~IDGvDI~~i~l~~LRs 1291 (1354)
|.-|.|+||+|||||||.+.|..-++.-...+ ..||+|-.-++.+....
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~ 60 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQ 60 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEECCCHHHHH
T ss_conf 74999989999999999999984589971798860467774446885133012202455
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.85 E-value=0.022 Score=31.86 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++++|.+|+|||||++++.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.83 E-value=0.017 Score=32.70 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899987999887789988829865
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
+++|.|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.80 E-value=0.02 Score=32.14 Aligned_cols=24 Identities=38% Similarity=0.643 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 969999879996489999999315
Q 000680 1243 GTRVGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1243 GekVgIVGrTGSGKSTL~~~L~Rl 1266 (1354)
|=||++||++|+|||||++.|.+-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.79 E-value=0.022 Score=31.80 Aligned_cols=22 Identities=45% Similarity=0.699 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|.+|+|||||++++.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.75 E-value=0.016 Score=32.99 Aligned_cols=64 Identities=25% Similarity=0.336 Sum_probs=37.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCC---CHHHHHHHHHHH
Q ss_conf 880899987999887789988829865887389991919998078878987588997239999---989999999995
Q 000680 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPM---DKARYDKAIKAC 696 (1354)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~~~---d~~~y~~vi~ac 696 (1354)
.|.+++|+||+|+||+||.+.++-+.+...-.. .+.|-.-.| |++=.-|.+| +++.+++-+++=
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~----~is~TTR~~-------R~~E~~G~dY~Fvs~~~F~~~i~~g 67 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQV----SVSHTTRQP-------RPGEVHGEHYFFVNHDEFKEMISRD 67 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEE----CCCEECSCC-------CTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEE----EEEEECCCC-------CCCCCCCCCCEEECHHHHHHHHHHH
T ss_conf 980999999999999999999986398668427----888763678-------8655432123343289999875421
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.74 E-value=0.024 Score=31.51 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899987999887789988829865
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
.++++|+.|+|||||++++.|.-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.74 E-value=0.0069 Score=35.86 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=28.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9969999879996489999999315489997799
Q 000680 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275 (1354)
Q Consensus 1242 ~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~ 1275 (1354)
+|++..++|.||.|||||+++|.+=.....|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.64 E-value=0.022 Score=31.86 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=29.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCC
Q ss_conf 89998799988778998882986588738999191999807887898
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS 671 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~pwi~~ 671 (1354)
+++|.|++||||||+.+.|.-.+...... ...-.+..++++-|...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~-~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD-YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSC-GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCC-CCCCCEEEEECCCCCCC
T ss_conf 99998999787999999999996410134-57884399934653224
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=93.61 E-value=0.17 Score=24.88 Aligned_cols=143 Identities=12% Similarity=0.057 Sum_probs=63.6
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC----CCCCCEEEECCEEEEEECCCCCCCCCHHHHHH-CCCCCCHHHHHHHHH
Q ss_conf 5088089998799988778998882986----58873899919199980788789875889972-399999899999999
Q 000680 620 IKWAQKIAVCGSVGAGKSSLLYAILGEI----PKISGTVNLYGSIAYVSQTSWIQSGSIRDNIL-YGKPMDKARYDKAIK 694 (1354)
Q Consensus 620 i~~G~~~~ivG~~GsGKStLl~~ilGe~----~~~~G~v~~~g~iayv~Q~pwi~~~TireNIl-fg~~~d~~~y~~vi~ 694 (1354)
+.+|+++.|+|+.|+|||+|+..+.--+ +...+...-.+++.|+.-+-. ...+++.+. .+..++...+.....
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~--~~~~~~Rl~~~~~~~~~~~~~~~~~ 103 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP--PTAIHHRLHALGAHLSAEERQAVAD 103 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC--HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCH--HHHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 55895899992899989999999999997699721112357873689851234--9999999999862368666531233
Q ss_pred HHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC-----CHHHHHHHHHHHHHH-HCC
Q ss_conf 95107988218999963126888877948999999999980499899982878886-----999999999999978-149
Q 000680 695 ACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV-----DAHTAATLFNECVMA-ALE 768 (1354)
Q Consensus 695 ac~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAvy~~~di~lLDdp~sal-----D~~~~~~if~~~i~~-~l~ 768 (1354)
.+...+.-+ ...... -....-.+. +...+++++++|-..... |....+.++..+-.- ...
T Consensus 104 ------~~~~~~~~~-----~~~~~~--~~~~~~~~~-~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~ 169 (274)
T d1nlfa_ 104 ------GLLIQPLIG-----SLPNIM--APEWFDGLK-RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 169 (274)
T ss_dssp ------HEEECCCTT-----SCCCTT--SHHHHHHHH-HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ------CCEECCCCC-----CCCHHH--HHHHHHHHH-HHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf ------323214567-----420357--899999988-752676589628135422665232256899998877776447
Q ss_pred CCEEEEECCC
Q ss_conf 9589997489
Q 000680 769 KKTVILVTHQ 778 (1354)
Q Consensus 769 ~kT~Ilvth~ 778 (1354)
+.|++++.|.
T Consensus 170 ~~~vi~v~H~ 179 (274)
T d1nlfa_ 170 GCSIVFLHHA 179 (274)
T ss_dssp CCEEEEEEEC
T ss_pred CCCEEHHHHC
T ss_conf 9754013100
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.61 E-value=0.017 Score=32.75 Aligned_cols=40 Identities=28% Similarity=0.327 Sum_probs=28.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 8808999879998877899888298658873899919199980788
Q 000680 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS 667 (1354)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~p 667 (1354)
+.-.++|+|+.|+|||||+..+...+... | .++|.+.=+|
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~-g-----~~vavlavDp 92 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIRE-G-----LKVAVIAVDP 92 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHT-T-----CCEEEEEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC-C-----CCEEEECCCC
T ss_conf 83289743899998999999999999756-9-----8332203777
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.52 E-value=0.011 Score=34.15 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80899987999887789988829865
Q 000680 623 AQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
.-.++++|++++|||||+++|.|.-.
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 97899988999989999999858985
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.46 E-value=0.0085 Score=35.18 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=26.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 08999879998877899888298658873899
Q 000680 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1354)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~ 655 (1354)
+.+.|+||+|+|||||++.+..++....+.+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~ 33 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 69999889997199999999999997799799
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.43 E-value=0.023 Score=31.73 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=28.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 08999879998877899888298658873899919199980788
Q 000680 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS 667 (1354)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~p 667 (1354)
+.++|+|..|||||||+..++.++..... +++.+..++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~------~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGW------RVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTC------CEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCC------EEEEEEECC
T ss_conf 09999809999899999999999986798------379998316
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.0039 Score=37.82 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=38.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCCEECCCCCCC
Q ss_conf 699998799964899999993154899977999696389999478850190644665223
Q 000680 1244 TRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303 (1354)
Q Consensus 1244 ekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDGvDI~~i~l~~LRs~isiIpQdp~LF 1303 (1354)
..|.|+|+.|+|||||+..+.+.+....+.+.+.+.+........+.....-+.|+...+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 699998899971999999999999977997999984550122211465412343302466
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.33 E-value=0.025 Score=31.44 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089998799988778998882986
Q 000680 624 QKIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
+.++|+|+.|||||||.++|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.29 E-value=0.038 Score=29.97 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=23.5
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 850880899987999887789988829
Q 000680 619 DIKWAQKIAVCGSVGAGKSSLLYAILG 645 (1354)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~ilG 645 (1354)
=+++|+++.|.|++|||||+|..-++-
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 955887999985898988999999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.21 E-value=0.032 Score=30.60 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=24.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0880899987999887789988829865
Q 000680 621 KWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
++|..+.++|.+||||||+.+++.-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.17 E-value=0.018 Score=32.48 Aligned_cols=66 Identities=20% Similarity=0.354 Sum_probs=38.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCH-HHHHH---CCCC--CCHHHHHHHHH
Q ss_conf 89998799988778998882986588738999191999807887898758-89972---3999--99899999999
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI-RDNIL---YGKP--MDKARYDKAIK 694 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~pwi~~~Ti-reNIl---fg~~--~d~~~y~~vi~ 694 (1354)
+++|.|++||||||+.+.|-..+....+ .-++..++++-+...... .+.-+ +|.| +|-+...+.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~----~~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pes~D~~~L~~~L~ 153 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE----HRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVS 153 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT----CCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEEEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999689999876899999999730468----99659995215689845888836876688167631999999999
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.06 E-value=0.02 Score=32.19 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=23.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 999987999648999999931548999779
Q 000680 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I 1274 (1354)
.++|+|.+|||||||++.|.+-+....-++
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v 33 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRP 33 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 899991899989999999999999779768
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.00 E-value=0.046 Score=29.35 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9969999879996489999999315489997799969
Q 000680 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1354)
Q Consensus 1242 ~GekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDG 1278 (1354)
.|+-|.|+|++||||||+.+.|.+-... --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.94 E-value=0.076 Score=27.57 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799964899999993154
Q 000680 1246 VGVVGRTGSGKTTLISALFRLV 1267 (1354)
Q Consensus 1246 VgIVGrTGSGKSTL~~~L~Rl~ 1267 (1354)
|||.|++||||||+++.|....
T Consensus 83 IGIaG~sgSGKSTla~~L~~lL 104 (308)
T d1sq5a_ 83 ISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHHH
T ss_conf 9996899998768999999997
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.87 E-value=0.035 Score=30.22 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879998877899888298
Q 000680 626 IAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 626 ~~ivG~~GsGKStLl~~ilGe 646 (1354)
++|+|.+.+|||||+++|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.65 E-value=0.03 Score=30.83 Aligned_cols=28 Identities=29% Similarity=0.300 Sum_probs=23.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0880899987999887789988829865
Q 000680 621 KWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
++.-.++++|+.|+|||||++.+.|.-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7777899999999898999999967887
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=0.12 Score=26.11 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|..|+|||||++.+++.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.54 E-value=0.052 Score=28.93 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 088089998799988778998882986
Q 000680 621 KWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
|+|-.++|+|+.||||||+.+.|.-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=92.53 E-value=0.029 Score=30.86 Aligned_cols=22 Identities=27% Similarity=0.637 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879996489999999315
Q 000680 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl 1266 (1354)
+|+|||++|+|||||++.|.+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.39 E-value=0.24 Score=23.60 Aligned_cols=44 Identities=30% Similarity=0.558 Sum_probs=32.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECCEECCCCCH
Q ss_conf 9699998799964899999993154------------8999779996963899994
Q 000680 1243 GTRVGVVGRTGSGKTTLISALFRLV------------EPAGGSILIDGVDICSMGL 1286 (1354)
Q Consensus 1243 GekVgIVGrTGSGKSTL~~~L~Rl~------------e~~~G~I~IDGvDI~~i~l 1286 (1354)
+=||||+|++|+|||||+++|++-- ....|.+.++|.++..++.
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~ 63 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDT 63 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCCEEEEECC
T ss_conf 88899999999999999999977876224225654333200122049923465236
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.36 E-value=0.038 Score=29.99 Aligned_cols=50 Identities=24% Similarity=0.382 Sum_probs=29.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC--------------CCCEEEECCEECCCCCHHHHHCCC
Q ss_conf 9969999879996489999999315489--------------997799969638999947885019
Q 000680 1242 EGTRVGVVGRTGSGKTTLISALFRLVEP--------------AGGSILIDGVDICSMGLKDLRVKL 1293 (1354)
Q Consensus 1242 ~GekVgIVGrTGSGKSTL~~~L~Rl~e~--------------~~G~I~IDGvDI~~i~l~~LRs~i 1293 (1354)
.|.-+-|+|||||||+||.+.|..-++. ..|+ +||+|-.-++.+.....+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E--~~G~dY~Fvs~~~F~~~i 64 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE--VHGEHYFFVNHDEFKEMI 64 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC--CCCCCCEEECHHHHHHHH
T ss_conf 9809999999999999999999863986684278887636788655--432123343289999875
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.29 E-value=0.065 Score=28.15 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 79489999999999804998999828788869999999999999781499589997489431
Q 000680 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781 (1354)
Q Consensus 720 LSGGQkqRi~LARAvy~~~di~lLDdp~salD~~~~~~if~~~i~~~l~~kT~Ilvth~~~~ 781 (1354)
++..|.++ +-+++....-++|+=-|+.+=-..+-..+.+.+. -.++.++.+-.-+++
T Consensus 142 ~~~~~~~~--l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~~~---~~~~~i~tiEdPiE~ 198 (401)
T d1p9ra_ 142 MTAHNHDN--FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELN---SSERNILTVEDPIEF 198 (401)
T ss_dssp CCHHHHHH--HHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSCEEEEESSCCS
T ss_pred CCHHHHHH--HHHHHHHHHCEEEEECCCCCCCCHHHHHHHHHHC---CCCCEEEEECCCCCC
T ss_conf 35777899--9999864105489876787774477999866625---787469996267434
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.28 E-value=0.049 Score=29.12 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++++|++|+|||||++++.|+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.24 E-value=0.05 Score=29.05 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++++|..|+|||||++.+.+.-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.18 E-value=0.049 Score=29.10 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=23.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 808999879998877899888298658873
Q 000680 623 AQKIAVCGSVGAGKSSLLYAILGEIPKISG 652 (1354)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~ilGe~~~~~G 652 (1354)
.++++|.|+.||||||+.+.|.-.+.....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~ 30 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGV 30 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 988999899998989999999999987699
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.17 E-value=0.084 Score=27.22 Aligned_cols=122 Identities=15% Similarity=0.174 Sum_probs=56.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHH
Q ss_conf 8999879998877899888298658--87389991919998078878987588997239999989999999995107988
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDI 702 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~~--~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~~~d~~~y~~vi~ac~L~~dl 702 (1354)
-++|+|++|+|||||..+++..... ..|++ .+..+. .+++++...+-+. +..-.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v---------~~g~~~------------~D~~~~E~~r~~t---i~~~~ 59 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRV---------EEGTTT------------TDYTPEAKLHRTT---VRTGV 59 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG---------GGTCCS------------SCCSHHHHHTTSC---CSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCC---------HHCCCC------------CCCHHHHHHHCCE---EEEEC
T ss_conf 99999488980999999999970975530662---------222113------------5626988873876---87510
Q ss_pred H--CCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 2--189999631268888-7794899999999998049989998287888699999999999997814995899974894
Q 000680 703 N--NFDHGDLTEIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1354)
Q Consensus 703 ~--~lp~GD~T~IGe~G~-~LSGGQkqRi~LARAvy~~~di~lLDdp~salD~~~~~~if~~~i~~~l~~kT~Ilvth~~ 779 (1354)
. .+.+---+.|.-.|. +.+|--..=+ -..|.-|++.| +..++-+++.+++ +.+. ..+..++++-+.+
T Consensus 60 ~~~~~~~~~~n~iDtPGh~dF~~e~~~al-----~~~D~avlvvd-a~~Gv~~~t~~~~-~~~~---~~~~p~~i~iNk~ 129 (267)
T d2dy1a2 60 APLLFRGHRVFLLDAPGYGDFVGEIRGAL-----EAADAALVAVS-AEAGVQVGTERAW-TVAE---RLGLPRMVVVTKL 129 (267)
T ss_dssp EEEEETTEEEEEEECCCSGGGHHHHHHHH-----HHCSEEEEEEE-TTTCSCHHHHHHH-HHHH---HTTCCEEEEEECG
T ss_pred CCCCCCCCCEEEECCCCHHHHHHHHHHHH-----CCCCCEEEEEE-CCCCCCCHHHHHH-HHHH---HCCCCCCCCCCCC
T ss_conf 22223432106880681554335565431-----24673389842-3577421157887-7655---4044310133320
Q ss_pred C
Q ss_conf 3
Q 000680 780 E 780 (1354)
Q Consensus 780 ~ 780 (1354)
.
T Consensus 130 D 130 (267)
T d2dy1a2 130 D 130 (267)
T ss_dssp G
T ss_pred C
T ss_conf 2
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.10 E-value=0.013 Score=33.69 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++++|.+|+|||||++++.|+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.10 E-value=0.033 Score=30.49 Aligned_cols=38 Identities=29% Similarity=0.244 Sum_probs=27.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEC
Q ss_conf 699998799964899999993154899---97799969638
Q 000680 1244 TRVGVVGRTGSGKTTLISALFRLVEPA---GGSILIDGVDI 1281 (1354)
Q Consensus 1244 ekVgIVGrTGSGKSTL~~~L~Rl~e~~---~G~I~IDGvDI 1281 (1354)
..+||+|++|||||||+..|.+.+... -|.|.-|+-+.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~~ 42 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGG 42 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 09999809999899999999999986798379998316766
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.05 E-value=0.083 Score=27.26 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++|+|+.|||||||++.++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.97 E-value=0.068 Score=27.96 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=23.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 880899987999887789988829865
Q 000680 622 WAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
..+++.++|++||||||+.++|..++.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 985999989999998999999999728
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.71 E-value=0.076 Score=27.57 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=20.6
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf 049989998287888699999999999997814995899974894315
Q 000680 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL 782 (1354)
Q Consensus 735 y~~~di~lLDdp~salD~~~~~~if~~~i~~~l~~kT~Ilvth~~~~l 782 (1354)
..+.|++++|-.- ... +....+.+.+ . ..+|-+++|-+..+..
T Consensus 133 ~~~~d~~l~~~~~-~~~-~~d~~l~~~l-~--~~~k~~~~V~nK~D~~ 175 (400)
T d1tq4a_ 133 FYEYDFFIIISAT-RFK-KNDIDIAKAI-S--MMKKEFYFVRTKVDSD 175 (400)
T ss_dssp GGGCSEEEEEESS-CCC-HHHHHHHHHH-H--HTTCEEEEEECCHHHH
T ss_pred HHCCEEEEEECCC-CCC-HHHHHHHHHH-H--HCCCCEEEEEECCCCC
T ss_conf 3226599996588-887-8899999999-9--7699879997086321
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.57 E-value=0.066 Score=28.09 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++++|+.|+|||||++.+.+.-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.57 E-value=0.29 Score=22.93 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99987999887789988829865
Q 000680 626 IAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 626 ~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
+.+.||.|+|||++.+++..++.
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 88766898883599999998739
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.54 E-value=0.18 Score=24.57 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999887789988829
Q 000680 625 KIAVCGSVGAGKSSLLYAILG 645 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilG 645 (1354)
.++++|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.53 E-value=0.067 Score=28.03 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|+.|+|||||++.+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=91.49 E-value=0.07 Score=27.85 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=23.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 69999879996489999999315489997799969
Q 000680 1244 TRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1354)
Q Consensus 1244 ekVgIVGrTGSGKSTL~~~L~Rl~e~~~G~I~IDG 1278 (1354)
+-|.|+|.+||||||+++.|.+- ..|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~---~~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH---CCCCEEECH
T ss_conf 79999899999999999999995---799799603
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.37 E-value=0.065 Score=28.11 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0899987999887789988829865
Q 000680 624 QKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
.+++++|.+||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=91.24 E-value=0.088 Score=27.09 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=22.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0996999987999648999999931548
Q 000680 1241 SEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1354)
Q Consensus 1241 ~~GekVgIVGrTGSGKSTL~~~L~Rl~e 1268 (1354)
++|-+|.|.|+.||||||+...|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=91.23 E-value=0.077 Score=27.54 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=7.5
Q ss_pred EEEEECCCCCCCHHHHH
Q ss_conf 99982878886999999
Q 000680 740 IYLFDDPFSAVDAHTAA 756 (1354)
Q Consensus 740 i~lLDdp~salD~~~~~ 756 (1354)
+.++.|+....+++...
T Consensus 127 ~v~vvd~~~~~~~~~~~ 143 (244)
T d1yrba1 127 VVYISDPEILKKPNDYC 143 (244)
T ss_dssp EEEEECGGGCCSHHHHH
T ss_pred EEEEECCCCCCCCHHHH
T ss_conf 89996365566750476
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=91.11 E-value=0.06 Score=28.39 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++|+|+.||||||+.+.|.-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=90.98 E-value=0.1 Score=26.49 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 088089998799988778998882986
Q 000680 621 KWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
|+|-.++++||.||||||..+.|.-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.93 E-value=0.1 Score=26.65 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89998799988778998882
Q 000680 625 KIAVCGSVGAGKSSLLYAIL 644 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~il 644 (1354)
-++|+|.+|||||||..+++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=90.92 E-value=0.077 Score=27.55 Aligned_cols=12 Identities=25% Similarity=0.388 Sum_probs=8.2
Q ss_pred CCCEEEEECCCC
Q ss_conf 995899974894
Q 000680 768 EKKTVILVTHQV 779 (1354)
Q Consensus 768 ~~kT~Ilvth~~ 779 (1354)
-+.++|+.||--
T Consensus 147 ~~~~ivv~t~~D 158 (257)
T d1h65a_ 147 WNKAIVALTHAQ 158 (257)
T ss_dssp GGGEEEEEECCS
T ss_pred HHCEEEEEECCC
T ss_conf 638899998864
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.91 E-value=0.096 Score=26.77 Aligned_cols=27 Identities=15% Similarity=0.458 Sum_probs=22.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 808999879998877899888298658
Q 000680 623 AQKIAVCGSVGAGKSSLLYAILGEIPK 649 (1354)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~ilGe~~~ 649 (1354)
.++++++||+|+||+||.+.++.+.+.
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~~ 29 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHPD 29 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 771999998999999999999970976
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.90 E-value=0.076 Score=27.57 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987999648999999931548
Q 000680 1245 RVGVVGRTGSGKTTLISALFRLVE 1268 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl~e 1268 (1354)
.|||.|++||||||+++.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=90.89 E-value=0.074 Score=27.66 Aligned_cols=59 Identities=14% Similarity=0.258 Sum_probs=35.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf 08808999879998877899888298658873899919199980788789875889972399999899999
Q 000680 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDK 691 (1354)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~~~d~~~y~~ 691 (1354)
..+.++.++|++||||||+.+.|...+.. ..+ . ..++...........+.++..+....
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~----~~~-------~-~d~~~~~~~~~~~~~~~~~~~~~~~~ 62 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLHA----AFL-------D-GDFLHPRRNIEKMASGEPLNDDDRKP 62 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC----EEE-------E-GGGGCCHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCC----CEE-------C-HHHHHHHHHHHHHCCCCCEEHHHHHH
T ss_conf 98718999899998989999999998697----831-------0-36645998853002476300113477
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.88 E-value=0.05 Score=29.01 Aligned_cols=27 Identities=22% Similarity=0.275 Sum_probs=23.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 880899987999887789988829865
Q 000680 622 WAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
+|..+.++|++||||||+.+.|.-.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=90.82 E-value=0.077 Score=27.55 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0899987999887789988829865
Q 000680 624 QKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
+++.|+|++||||||+.+.|...+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.81 E-value=0.084 Score=27.25 Aligned_cols=25 Identities=40% Similarity=0.736 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999879998877899888298658
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIPK 649 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~~ 649 (1354)
.++|+||+||||+||.+.++.+.+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.71 E-value=0.2 Score=24.31 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 08999879998877899888298
Q 000680 624 QKIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilGe 646 (1354)
-.++++|+.|+|||||++.+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 38999998992989999999719
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.67 E-value=0.35 Score=22.30 Aligned_cols=99 Identities=30% Similarity=0.385 Sum_probs=56.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHCC
Q ss_conf 99987999887789988829865887389991919998078878987588997239999989999999995107988218
Q 000680 626 IAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNF 705 (1354)
Q Consensus 626 ~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~~~d~~~y~~vi~ac~L~~dl~~l 705 (1354)
+.|.|++|||||-|++|+.-++... | -.+.|++-. +. ...+...+..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~~~-~-----~~~~~~~~~---------~~--------~~~~~~~~~~---------- 85 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAKKR-G-----YRVIYSSAD---------DF--------AQAMVEHLKK---------- 85 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHT-T-----CCEEEEEHH---------HH--------HHHHHHHHHH----------
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-C-----CCEEEECHH---------HH--------HHHHHHHHHC----------
T ss_conf 7998889983999999999874467-6-----504884437---------87--------9999999871----------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHH-CCCCEEEEECCC
Q ss_conf 99996312688887794899999999998049989998287888-69999999999999781-499589997489
Q 000680 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA-VDAHTAATLFNECVMAA-LEKKTVILVTHQ 778 (1354)
Q Consensus 706 p~GD~T~IGe~G~~LSGGQkqRi~LARAvy~~~di~lLDdp~sa-lD~~~~~~if~~~i~~~-l~~kT~Ilvth~ 778 (1354)
|+.+ -.+..+..+|++++||.=.- -+......+|+ ++... ..++.+|+.+..
T Consensus 86 -----------------~~~~---~~~~~~~~~dll~iDDi~~i~~~~~~~~~lf~-lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 86 -----------------GTIN---EFRNMYKSVDLLLLDDVQFLSGKERTQIEFFH-IFNTLYLLEKQIILASDR 139 (213)
T ss_dssp -----------------TCHH---HHHHHHHTCSEEEEECGGGGTTCHHHHHHHHH-HHHHHHHTTCEEEEEESS
T ss_pred -----------------CCHH---HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH-HHHHHHHCCCEEEEECCC
T ss_conf -----------------6626---67898762130101126550586577889999-999876316638995487
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=90.67 E-value=0.0051 Score=36.90 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=26.9
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 311266885088089998799988778998882
Q 000680 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL 644 (1354)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~il 644 (1354)
.+++.++++.+| +++|+|++||||||++.||.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 870279974998-08998899998799999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.56 E-value=0.11 Score=26.42 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=23.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0996999987999648999999931548
Q 000680 1241 SEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1354)
Q Consensus 1241 ~~GekVgIVGrTGSGKSTL~~~L~Rl~e 1268 (1354)
+.|-.|-++|.+||||||+..+|.+-..
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=90.56 E-value=0.11 Score=26.41 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=21.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099699998799964899999993154
Q 000680 1241 SEGTRVGVVGRTGSGKTTLISALFRLV 1267 (1354)
Q Consensus 1241 ~~GekVgIVGrTGSGKSTL~~~L~Rl~ 1267 (1354)
+.+.-+.|+|++||||||+.+.|.+-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.48 E-value=0.058 Score=28.50 Aligned_cols=42 Identities=29% Similarity=0.312 Sum_probs=27.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf 899987999887789988829865887389991919998078878
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI 669 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~pwi 669 (1354)
+++|.|+.|||||||...|.-.+....|. .-.++.++.+-+.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~~---~~~v~~iS~DdfY 70 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGG---EKSIGYASIDDFY 70 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGG---GSCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCC---CCCEEEECCCCCC
T ss_conf 99837998788999999999999987277---8606763567777
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.24 E-value=0.08 Score=27.41 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999879996489999999315
Q 000680 1244 TRVGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1244 ekVgIVGrTGSGKSTL~~~L~Rl 1266 (1354)
.-|-||||||+||+||.+.|.+-
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 71999998999999999999970
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.21 E-value=0.24 Score=23.59 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999887789988829
Q 000680 625 KIAVCGSVGAGKSSLLYAILG 645 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilG 645 (1354)
.++++|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.13 E-value=0.09 Score=27.02 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=8.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999648999999931
Q 000680 1245 RVGVVGRTGSGKTTLISALFR 1265 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~R 1265 (1354)
+|+|.|++|+|||||++.|..
T Consensus 9 ~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899989999989999999999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.05 E-value=0.15 Score=25.25 Aligned_cols=29 Identities=14% Similarity=0.176 Sum_probs=25.1
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 50880899987999887789988829865
Q 000680 620 IKWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 620 i~~G~~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
+++|+++.|.|++|||||+|..-++....
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 85997999995899999999999999998
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.91 E-value=0.12 Score=26.12 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799964899999993154
Q 000680 1245 RVGVVGRTGSGKTTLISALFRLV 1267 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl~ 1267 (1354)
.|||.|++||||||+++.|....
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999787999999999996
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.90 E-value=0.18 Score=24.60 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=32.3
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 8508808999879998877899888298658873899919199980788
Q 000680 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS 667 (1354)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~p 667 (1354)
=+++|+++.|.|+.|||||+|..-++-........-...+.+.|+..+.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~ 78 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 78 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 9869969999838999889999999998631243126896399994023
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.89 E-value=0.12 Score=26.13 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++|+|.+.+|||||+.+|++.-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.87 E-value=0.11 Score=26.22 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899987999887789988829865
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
.++|+||+||||+|+.+.++.+.+
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999999999999999997488
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=89.86 E-value=0.13 Score=25.68 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879996489999999315
Q 000680 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl 1266 (1354)
+|+++|++|+|||||++.|.+-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=89.78 E-value=0.11 Score=26.32 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89998799988778998882
Q 000680 625 KIAVCGSVGAGKSSLLYAIL 644 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~il 644 (1354)
+++|+|+.||||||+.+.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=89.77 E-value=0.19 Score=24.42 Aligned_cols=42 Identities=14% Similarity=0.244 Sum_probs=28.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 088089998799988778998882986588738999191999807887
Q 000680 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668 (1354)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~pw 668 (1354)
+++..++++||+|+||||-+.-|.-.+. ..| .+++.+.=+..
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g-----~kV~lit~Dt~ 45 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLG-----KKVMFCAGDTF 45 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH-TTT-----CCEEEECCCCS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CCEEEEEECCC
T ss_conf 9977999989999988999999999999-779-----90799981366
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=89.76 E-value=0.09 Score=27.00 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=14.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799964899999993154
Q 000680 1245 RVGVVGRTGSGKTTLISALFRLV 1267 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl~ 1267 (1354)
-|.|+|++||||||+++.|.+-+
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 89998999999899999999980
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=89.72 E-value=0.14 Score=25.44 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879996489999999315
Q 000680 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl 1266 (1354)
+|++||++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.71 E-value=0.1 Score=26.61 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.3
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 089998799988778998882
Q 000680 624 QKIAVCGSVGAGKSSLLYAIL 644 (1354)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~il 644 (1354)
-+++|+|+.||||||+...+-
T Consensus 4 ~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998988778999999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=89.64 E-value=0.13 Score=25.69 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899987999887789988829865
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
.++++|+.|+|||||++.+.|+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.60 E-value=0.13 Score=25.69 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
-++|+|+.|+|||||++.+.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=89.57 E-value=0.1 Score=26.51 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999987999648999999931548
Q 000680 1243 GTRVGVVGRTGSGKTTLISALFRLVE 1268 (1354)
Q Consensus 1243 GekVgIVGrTGSGKSTL~~~L~Rl~e 1268 (1354)
..-|.|.|.+||||||+++.|.+...
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=89.50 E-value=0.11 Score=26.32 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
-+.++|+.||||||+.+.|.-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.43 E-value=0.13 Score=25.75 Aligned_cols=24 Identities=46% Similarity=0.556 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899987999887789988829865
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
.++|+|..+||||||+++|+|+--
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 599981898979999999968997
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.32 E-value=0.18 Score=24.58 Aligned_cols=34 Identities=24% Similarity=0.507 Sum_probs=26.3
Q ss_pred CCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 73112668850880899987999887789988829
Q 000680 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG 645 (1354)
Q Consensus 611 ~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilG 645 (1354)
..++.--+.+ .|.-+.++|++|+||||+...++.
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.25 E-value=0.09 Score=27.01 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=16.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 699998799964899999993154899
Q 000680 1244 TRVGVVGRTGSGKTTLISALFRLVEPA 1270 (1354)
Q Consensus 1244 ekVgIVGrTGSGKSTL~~~L~Rl~e~~ 1270 (1354)
..|+|.|..||||||+++.|...+...
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~ 28 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKE 28 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 889998999989899999999999876
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.21 E-value=0.33 Score=22.48 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|+.|+|||||++.+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=89.18 E-value=0.13 Score=25.66 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=22.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 088089998799988778998882986
Q 000680 621 KWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
++.-.++++|..|+|||||+..+.+.-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 985799999999989899999996688
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.18 E-value=0.13 Score=25.83 Aligned_cols=23 Identities=48% Similarity=0.618 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++|+|..+||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.07 E-value=0.14 Score=25.35 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|+.|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=88.96 E-value=0.19 Score=24.48 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879996489999999315
Q 000680 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl 1266 (1354)
+|||||++.||||||+++|.+.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999907787099999999974
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=88.94 E-value=0.46 Score=21.33 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=22.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80899987999887789988829865
Q 000680 623 AQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
..-+.+.||.|||||++.+++..++.
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 88678668998882289999999829
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.94 E-value=0.27 Score=23.24 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++|.||.||||||..+.|...+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.93 E-value=0.15 Score=25.27 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88089998799988778998882986
Q 000680 622 WAQKIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
+...++|+||.||||||+.+.|.-.+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.91 E-value=0.14 Score=25.50 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=32.0
Q ss_pred CCCCCCCCCCCCCCH--H-----HHHHHHHHHHHHCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 996312688887794--8-----9999999999804998--999828788869999999999999781499589997489
Q 000680 708 GDLTEIGQRGLNLSG--G-----QKQRIQLARAVYNDAD--IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778 (1354)
Q Consensus 708 GD~T~IGe~G~~LSG--G-----QkqRi~LARAvy~~~d--i~lLDdp~salD~~~~~~if~~~i~~~l~~kT~Ilvth~ 778 (1354)
.+.+.|.-.|.+-+. + +.+.-.+++...++++ ++...+............+.+. +. ....+|++++|+-
T Consensus 131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~-~~-~~~~r~i~Vitk~ 208 (306)
T d1jwyb_ 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKE-VD-PEGKRTIGVITKL 208 (306)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHH-HC-SSCSSEEEEEECT
T ss_pred CCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHH-HC-CCCCEEEEEEECC
T ss_conf 880686588864436688403589999999999982777516876325631003499999997-38-6788589998204
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.86 E-value=0.16 Score=25.08 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++++|+.|+|||||++.+.+.-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.81 E-value=0.13 Score=25.80 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879996489999999315
Q 000680 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl 1266 (1354)
.|+|||++|+|||||+++|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.69 E-value=0.27 Score=23.24 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=23.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 68850880899987999887789988829
Q 000680 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILG 645 (1354)
Q Consensus 617 ~l~i~~G~~~~ivG~~GsGKStLl~~ilG 645 (1354)
++-.-.|.-+.++|++|+||||+...++.
T Consensus 8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 8 VLVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999999999980899998999999998
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.69 E-value=0.14 Score=25.59 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88089998799988778998882986
Q 000680 622 WAQKIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
+-..++|+||.||||||+.+.|...+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97289998999999899999999985
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.62 E-value=0.19 Score=24.35 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=22.6
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 508808999879998877899888298
Q 000680 620 IKWAQKIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 620 i~~G~~~~ivG~~GsGKStLl~~ilGe 646 (1354)
-++-+++.++|+.||||||+.+.++..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999989999899999899999999976
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=88.62 E-value=0.19 Score=24.38 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=10.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 99699998799964899999993
Q 000680 1242 EGTRVGVVGRTGSGKTTLISALF 1264 (1354)
Q Consensus 1242 ~GekVgIVGrTGSGKSTL~~~L~ 1264 (1354)
+|=+|.|+|+.||||||+...|.
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 96389998999998899999999
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.54 E-value=0.35 Score=22.28 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++++|..|+|||||++.+.+.-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.45 E-value=0.17 Score=24.73 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999887789988829
Q 000680 625 KIAVCGSVGAGKSSLLYAILG 645 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilG 645 (1354)
.++++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.36 E-value=0.18 Score=24.61 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=32.1
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 8508808999879998877899888298658873899919199980788
Q 000680 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS 667 (1354)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~p 667 (1354)
-+++|+.+.|.|++|||||++...++.+.............+.|.....
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 81 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHH
T ss_conf 9768979999889988788999999999974443166662488740177
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.29 E-value=0.12 Score=25.98 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 880899987999887789988829865
Q 000680 622 WAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
++++++|-|+.||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.22 E-value=0.066 Score=28.08 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=30.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf 0899987999887789988829865887389991919998078878
Q 000680 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI 669 (1354)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~pwi 669 (1354)
-+++|+|++||||||+.+++...+... +-+.+.++|+.+.
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~------~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRRE------GVKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH------TCCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC------CCCEEEEECCCCC
T ss_conf 899998999780999999999997156------9976999477787
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.20 E-value=0.17 Score=24.72 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|...+|||||++++-|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.18 E-value=0.33 Score=22.47 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++++|..|+|||||+..+++.-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989978999999997197
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=88.10 E-value=0.16 Score=24.98 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|+.|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999648
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.93 E-value=0.12 Score=25.91 Aligned_cols=43 Identities=28% Similarity=0.614 Sum_probs=27.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC-------------CCCCEEEECCEECCCCCHHHHH
Q ss_conf 99987999648999999931548-------------9997799969638999947885
Q 000680 1246 VGVVGRTGSGKTTLISALFRLVE-------------PAGGSILIDGVDICSMGLKDLR 1290 (1354)
Q Consensus 1246 VgIVGrTGSGKSTL~~~L~Rl~e-------------~~~G~I~IDGvDI~~i~l~~LR 1290 (1354)
|.|+|+|||||+||.+.|..-.+ |..|+ .||+|..-++.+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~ 59 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFK 59 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--CCCCCCEECCHHHHH
T ss_conf 99989999998999999997488662477764268999997--578432432488999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=87.87 E-value=0.18 Score=24.68 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799964899999993154
Q 000680 1245 RVGVVGRTGSGKTTLISALFRLV 1267 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl~ 1267 (1354)
+|.|+|+.||||||+++.|..-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.86 E-value=0.17 Score=24.87 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 08999879998877899888298
Q 000680 624 QKIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilGe 646 (1354)
-.++|||-..+|||||++++-+-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=87.76 E-value=0.19 Score=24.47 Aligned_cols=20 Identities=35% Similarity=0.624 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89998799988778998882
Q 000680 625 KIAVCGSVGAGKSSLLYAIL 644 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~il 644 (1354)
+++|+|..||||||..+.+-
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=87.64 E-value=0.16 Score=24.95 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 08999879998877899888298658
Q 000680 624 QKIAVCGSVGAGKSSLLYAILGEIPK 649 (1354)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilGe~~~ 649 (1354)
..+.+.||.||||||+.++|.+++..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.64 E-value=0.2 Score=24.17 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999887789988829
Q 000680 625 KIAVCGSVGAGKSSLLYAILG 645 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilG 645 (1354)
.++++|+.|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=87.61 E-value=0.18 Score=24.53 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09969999879996489999999315
Q 000680 1241 SEGTRVGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1241 ~~GekVgIVGrTGSGKSTL~~~L~Rl 1266 (1354)
+..-||.+||++|+|||||++.|.+=
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 77778999999998989999999678
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.48 E-value=0.16 Score=24.98 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=17.5
Q ss_pred CCEEEEECCCCCC-CHHHHHHHHHHHH--HHH-CCCCEEEEECCCCCH
Q ss_conf 9899982878886-9999999999999--781-499589997489431
Q 000680 738 ADIYLFDDPFSAV-DAHTAATLFNECV--MAA-LEKKTVILVTHQVEF 781 (1354)
Q Consensus 738 ~di~lLDdp~sal-D~~~~~~if~~~i--~~~-l~~kT~Ilvth~~~~ 781 (1354)
.-+++.|...... ...+..++.+... ... .+++-++++-|..+.
T Consensus 76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~ 123 (209)
T d1nrjb_ 76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 123 (209)
T ss_dssp EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 562489973462339999999999999999987436986999980034
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.35 E-value=0.24 Score=23.59 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++++|+.|+|||||++.+.+.-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.33 E-value=0.23 Score=23.75 Aligned_cols=21 Identities=43% Similarity=0.521 Sum_probs=9.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999648999999931
Q 000680 1245 RVGVVGRTGSGKTTLISALFR 1265 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~R 1265 (1354)
.|.|+|+.||||||++..|..
T Consensus 8 iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899989999988999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=87.32 E-value=0.2 Score=24.22 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=23.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0880899987999887789988829865
Q 000680 621 KWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
++.-+++|-|..||||||+++.|...++
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9861999889999888999999998707
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.26 E-value=0.18 Score=24.53 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=29.5
Q ss_pred CCCCCCCCCCC------CCHHH-HHHHHHHHHHHCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 96312688887------79489-999999999804998--99982878886999999999999978149958999748
Q 000680 709 DLTEIGQRGLN------LSGGQ-KQRIQLARAVYNDAD--IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777 (1354)
Q Consensus 709 D~T~IGe~G~~------LSGGQ-kqRi~LARAvy~~~d--i~lLDdp~salD~~~~~~if~~~i~~~l~~kT~Ilvth 777 (1354)
+.|.|.-.|.+ -+..+ .+-.++++....+++ +++.++....+.......+.+. + .....++++++|+
T Consensus 126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~-~-~~~~~r~i~Vltk 201 (299)
T d2akab1 126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKE-V-DPQGQRTIGVITK 201 (299)
T ss_dssp SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHH-H-CTTCSSEEEEEEC
T ss_pred CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH-H-CCCCCCEEEEEEC
T ss_conf 72577168743346677631479999999999862756035664034542112599999997-3-8677813667702
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.10 E-value=0.23 Score=23.74 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++++|+.|+|||||++.+++.-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999909899999998299
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.08 E-value=0.59 Score=20.50 Aligned_cols=43 Identities=23% Similarity=0.429 Sum_probs=34.8
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 8508808999879998877899888298658873899919199980788
Q 000680 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS 667 (1354)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~p 667 (1354)
-++.|.++.+.|+.|||||++...+........ +.++|+.-+-
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g------~~v~yiDtE~ 95 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAG------GTCAFIDAEH 95 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT------CCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC------CEEEEEECCC
T ss_conf 866754789805876522799999999997079------9899998876
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=87.01 E-value=0.16 Score=25.03 Aligned_cols=21 Identities=43% Similarity=0.774 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879996489999999315
Q 000680 1246 VGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1246 VgIVGrTGSGKSTL~~~L~Rl 1266 (1354)
|||||++|+|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.99 E-value=0.19 Score=24.48 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=5.2
Q ss_pred CCCCCCCCCCHHHHH
Q ss_conf 766333580147998
Q 000680 983 MLFFDSTPVGRILTR 997 (1354)
Q Consensus 983 ~~fFd~~p~GrIlnR 997 (1354)
+.+|=..|....+.|
T Consensus 155 l~i~Ld~~pe~~~~R 169 (241)
T d1p5zb_ 155 GIIYLQATPETCLHR 169 (241)
T ss_dssp EEEEEECCHHHHHHH
T ss_pred EEEEECCCHHHHHHH
T ss_conf 554314588999999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.97 E-value=0.24 Score=23.55 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHH
Q ss_conf 88508808999879998877899888
Q 000680 618 LDIKWAQKIAVCGSVGAGKSSLLYAI 643 (1354)
Q Consensus 618 l~i~~G~~~~ivG~~GsGKStLl~~i 643 (1354)
+++.++ +++++|++||||||+|.||
T Consensus 20 i~f~~~-lnvlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 20 IGFSDR-VTAIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EECCSS-EEEEECCTTTCSTHHHHHH
T ss_pred EECCCC-EEEEECCCCCCHHHHHHHH
T ss_conf 967998-1999999998489999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.87 E-value=0.24 Score=23.57 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=24.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 08808999879998877899888298658
Q 000680 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPK 649 (1354)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilGe~~~ 649 (1354)
++|.+++|.|+-||||||+.+.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.82 E-value=0.27 Score=23.18 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879996489999999315
Q 000680 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl 1266 (1354)
.|+|+|++|+|||||+++|.+-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=86.76 E-value=0.21 Score=24.11 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799988778998882986
Q 000680 626 IAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 626 ~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
++++|+.||||||+.+.+...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=86.71 E-value=0.35 Score=22.26 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=22.9
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 68850880899987999887789988829
Q 000680 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILG 645 (1354)
Q Consensus 617 ~l~i~~G~~~~ivG~~GsGKStLl~~ilG 645 (1354)
++-...|.-+.++|++|+||||+...++.
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999999999980899999999999998
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.67 E-value=0.32 Score=22.56 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0899987999887789988829865
Q 000680 624 QKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
.-+.++||+|+|||.|.+++..++.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 6699989999888899999862132
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=86.65 E-value=0.15 Score=25.26 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879996489999999315
Q 000680 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl 1266 (1354)
.|||||++++|||||++.|.+-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.65 E-value=0.24 Score=23.63 Aligned_cols=21 Identities=43% Similarity=0.727 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879996489999999315
Q 000680 1246 VGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1246 VgIVGrTGSGKSTL~~~L~Rl 1266 (1354)
|.|+|||||||+||.+.|..-
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=86.62 E-value=0.32 Score=22.63 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=20.1
Q ss_pred HCCCCEEEEECCCCCCCHHHHHH----HHHHHH---HHH--CCCCEEEEECCCC
Q ss_conf 04998999828788869999999----999999---781--4995899974894
Q 000680 735 YNDADIYLFDDPFSAVDAHTAAT----LFNECV---MAA--LEKKTVILVTHQV 779 (1354)
Q Consensus 735 y~~~di~lLDdp~salD~~~~~~----if~~~i---~~~--l~~kT~Ilvth~~ 779 (1354)
..+++++++|-. +.++...+.. -..++. ..+ ..+.++++++|-.
T Consensus 145 ~~~~~~vvID~l-~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~ 197 (277)
T d1cr2a_ 145 GLGCDVIILDHI-SIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (277)
T ss_dssp TTCCSEEEEEEE-EC----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCCCCEEEECCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 367625997054-21203465443067789999999997650165520310356
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=86.60 E-value=0.26 Score=23.39 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=33.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCC--CCCCHHHHHHCCC
Q ss_conf 880899987999887789988829865887389991919998078878--9875889972399
Q 000680 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI--QSGSIRDNILYGK 682 (1354)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~pwi--~~~TireNIlfg~ 682 (1354)
+|.+++|-|+-||||||+...+...+... |- ......++|+- ...-+|+...-+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~-g~-----~~~~~~~ep~~~~~g~~i~~~~~~~~ 57 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQL-GI-----RDMVFTREPGGTQLAEKLRSLLLDIK 57 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHT-TC-----CCEEEEESSCSSHHHHHHHHHHHSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHC-CC-----CEEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 98789998998887999999999999967-99-----73998329899611445589884621
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=86.51 E-value=0.26 Score=23.28 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++|+|+.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.48 E-value=0.63 Score=20.26 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=33.6
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCC
Q ss_conf 85088089998799988778998882986588738999191999807887
Q 000680 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668 (1354)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~pw 668 (1354)
-++.|.++.+.|+.|||||+++..+........| .+.|+.-+-.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~------~~vyIDtE~~ 99 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG------VAAFIDAEHA 99 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTC------EEEEEESSCC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC------EEEEEECCCC
T ss_conf 8666336999648874889999999998754898------8999989766
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=86.44 E-value=0.4 Score=21.82 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879996489999999315
Q 000680 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl 1266 (1354)
||.+||+.|+|||||++.|.+-
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999999998999999998089
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.43 E-value=0.13 Score=25.64 Aligned_cols=24 Identities=42% Similarity=0.515 Sum_probs=13.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 969999879996489999999315
Q 000680 1243 GTRVGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1243 GekVgIVGrTGSGKSTL~~~L~Rl 1266 (1354)
|-.|-++|.+||||||+.+.|.+.
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 969998899999999999999999
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=86.35 E-value=0.27 Score=23.18 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899987999887789988829865
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
.++|-||+||||||..+.|..++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=86.28 E-value=0.22 Score=23.95 Aligned_cols=32 Identities=28% Similarity=0.253 Sum_probs=27.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 68850880899987999887789988829865
Q 000680 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 617 ~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
=+.+.+|+..+|.|+.|+|||+|+..|..-..
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 25645787556867999887899999999775
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.26 E-value=0.25 Score=23.46 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899987999887789988829865
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
.++++|..|+|||||++.+.+.-.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=86.25 E-value=0.19 Score=24.46 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++|.||.||||||+.+.|.-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.20 E-value=0.35 Score=22.27 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=18.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09969999879996489999999315
Q 000680 1241 SEGTRVGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1241 ~~GekVgIVGrTGSGKSTL~~~L~Rl 1266 (1354)
+.-+-|-++|..||||||++..++.-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99989999899999899999999976
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.11 E-value=0.28 Score=23.02 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++|.|+.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=85.96 E-value=0.21 Score=24.01 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=21.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 0899987999887789988829865887389
Q 000680 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654 (1354)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v 654 (1354)
.-+.|+|++|||||+++..++-..-...+.+
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~ 81 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRM 81 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 6589990799968999999999998479988
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.96 E-value=0.3 Score=22.82 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++|+|..|+|||||++.+++.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=85.93 E-value=0.24 Score=23.54 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089998799988778998882986
Q 000680 624 QKIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
+.+.++|+.||||||+.+.+.-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.87 E-value=0.3 Score=22.87 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|+.|+|||||++.+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.81 E-value=0.26 Score=23.37 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8089998799988778998882986
Q 000680 623 AQKIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
+-.++|+|...+|||||++++.+.-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 7379997899998999999997789
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=85.79 E-value=0.3 Score=22.82 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|+.|+|||||+..+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=85.76 E-value=0.29 Score=22.89 Aligned_cols=18 Identities=28% Similarity=0.518 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 489999999999804998
Q 000680 722 GGQKQRIQLARAVYNDAD 739 (1354)
Q Consensus 722 GGQkqRi~LARAvy~~~d 739 (1354)
.|.-.|-.||+.+..++.
T Consensus 62 d~~i~r~~l~~~vf~~~~ 79 (205)
T d1jjva_ 62 QGELNRAALRERVFNHDE 79 (205)
T ss_dssp ----CHHHHHHHHHTCHH
T ss_pred CCCCCHHHHHHHHHHHHH
T ss_conf 886528988644100135
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=85.76 E-value=0.25 Score=23.45 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999648999999931
Q 000680 1245 RVGVVGRTGSGKTTLISALFR 1265 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~R 1265 (1354)
||+|||++|+|||||++.+.+
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999899999999967
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=85.76 E-value=0.19 Score=24.41 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699998799964899999993154
Q 000680 1242 EGTRVGVVGRTGSGKTTLISALFRLV 1267 (1354)
Q Consensus 1242 ~GekVgIVGrTGSGKSTL~~~L~Rl~ 1267 (1354)
..=+|+|||++++|||||+++|.+--
T Consensus 15 ~~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 15 TGIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69789998899998999999985898
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.70 E-value=0.44 Score=21.53 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 8999879998877899888
Q 000680 625 KIAVCGSVGAGKSSLLYAI 643 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~i 643 (1354)
.+.++|..|+|||||+.-+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999989999989999988
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.67 E-value=0.26 Score=23.27 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|+.|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.66 E-value=0.26 Score=23.27 Aligned_cols=23 Identities=39% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++++|..|+|||||++.+.++-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999967899999998688
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=85.48 E-value=0.18 Score=24.57 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=22.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 880899987999887789988829865
Q 000680 622 WAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
+.-.++|+|+.|+|||||+..+...+.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 815986117998889999999999876
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=85.46 E-value=0.25 Score=23.49 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999648999999931
Q 000680 1245 RVGVVGRTGSGKTTLISALFR 1265 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~R 1265 (1354)
||.+||+.|+|||||++.|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=85.44 E-value=0.29 Score=22.97 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=13.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799964899999993154
Q 000680 1245 RVGVVGRTGSGKTTLISALFRLV 1267 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl~ 1267 (1354)
.|-++|++||||||+.+.|..-+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=85.41 E-value=0.37 Score=22.15 Aligned_cols=143 Identities=16% Similarity=0.094 Sum_probs=63.0
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHH-HCCCCCCHHHHHHHHHHHC
Q ss_conf 850880899987999887789988829865887389991919998078878987588997-2399999899999999951
Q 000680 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKACA 697 (1354)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~pwi~~~TireNI-lfg~~~d~~~y~~vi~ac~ 697 (1354)
-+++|+++.|.|++|+|||+|..-++....... ...+.|++-+.- ...++... .++ ++.+.+....
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~-----~~~~~~~s~e~~--~~~~~~~~~~~~--~~~~~~~~~~---- 88 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-----DEPGVFVTFEET--PQDIIKNARSFG--WDLAKLVDEG---- 88 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-----CCCEEEEESSSC--HHHHHHHHGGGT--CCHHHHHHTT----
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC-----CCCCCCCCCCCC--HHHHHHHHHHCC--CCHHHHHHHC----
T ss_conf 996983999994799999999999999999856-----887420126679--999999999849--9848988714----
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCHHH-HHHHH-HHHHHH-CCCCEEEEECCCCCC----CHHHHHHHHHHHHHHH-CCC
Q ss_conf 079882189999631268888779489-99999-999980-499899982878886----9999999999999781-499
Q 000680 698 LDKDINNFDHGDLTEIGQRGLNLSGGQ-KQRIQ-LARAVY-NDADIYLFDDPFSAV----DAHTAATLFNECVMAA-LEK 769 (1354)
Q Consensus 698 L~~dl~~lp~GD~T~IGe~G~~LSGGQ-kqRi~-LARAvy-~~~di~lLDdp~sal----D~~~~~~if~~~i~~~-l~~ 769 (1354)
..... +.....+.-....... ..-+. +.+++. .++++++.|....-. +..........+.... ..+
T Consensus 89 ---~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (242)
T d1tf7a1 89 ---KLFIL---DASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIG 162 (242)
T ss_dssp ---SEEEE---ECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred ---CHHHH---HHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf ---30244---421033544443024589999999999886312220020788998760572678999999999998639
Q ss_pred CEEEEECCCCC
Q ss_conf 58999748943
Q 000680 770 KTVILVTHQVE 780 (1354)
Q Consensus 770 kT~Ilvth~~~ 780 (1354)
.|++++.|...
T Consensus 163 ~~~~~~~~~~~ 173 (242)
T d1tf7a1 163 ATTVMTTERIE 173 (242)
T ss_dssp CEEEEEEECSS
T ss_pred CCEEEEECCCC
T ss_conf 71688421025
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.38 E-value=0.32 Score=22.61 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++|+|+.|+|||||++.+++.-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999939999999996299
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=85.34 E-value=0.39 Score=21.89 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=24.6
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5088089998799988778998882986
Q 000680 620 IKWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 620 i~~G~~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
+++|+++.|.|++|+|||++..-+.-..
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6288599999179999899999999999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.30 E-value=0.42 Score=21.64 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999879998877899888298658
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIPK 649 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~~ 649 (1354)
.++++|..|+|||||++.+.+....
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999998992999999999728677
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.28 E-value=0.33 Score=22.51 Aligned_cols=25 Identities=40% Similarity=0.696 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHH-CCCCC
Q ss_conf 89998799988778998882-98658
Q 000680 625 KIAVCGSVGAGKSSLLYAIL-GEIPK 649 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~il-Ge~~~ 649 (1354)
.++++|..|+|||||++.+. |+.+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~~~ 29 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRFPD 29 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 99999999929899999997399988
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.17 E-value=0.34 Score=22.36 Aligned_cols=21 Identities=33% Similarity=0.733 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999887789988829
Q 000680 625 KIAVCGSVGAGKSSLLYAILG 645 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilG 645 (1354)
.++++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.16 E-value=0.7 Score=19.91 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|..|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=85.14 E-value=0.38 Score=22.02 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=21.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09969999879996489999999315
Q 000680 1241 SEGTRVGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1241 ~~GekVgIVGrTGSGKSTL~~~L~Rl 1266 (1354)
++.=||.+||+.|+|||||++.|..-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=84.93 E-value=0.37 Score=22.15 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799988778998882986
Q 000680 626 IAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 626 ~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
++|+|.+.+|||||+.+|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.90 E-value=0.34 Score=22.37 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=24.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 08808999879998877899888298658
Q 000680 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPK 649 (1354)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilGe~~~ 649 (1354)
.+|.++++-|.-||||||+.+.+...+..
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 97689999899888699999999999971
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.62 E-value=0.27 Score=23.16 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=30.3
Q ss_pred EEEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 84379727999887311266885088089998799988778998882986
Q 000680 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 598 ~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
+++.+..+++. -..|+.++ .|=..++|+|+.++|||+||+.++|..
T Consensus 11 ~~~~l~~~~e~-l~~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 11 TNGRLMANPEA-LKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp ETTEEEECHHH-HHHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCEEEECHHH-HHHHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99949989999-99997079---987999988999997999999980998
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.57 E-value=0.67 Score=20.03 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999887789988829
Q 000680 625 KIAVCGSVGAGKSSLLYAILG 645 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilG 645 (1354)
.++++|..|+|||||+..++.
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.56 E-value=0.22 Score=23.85 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=23.9
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5088089998799988778998882986
Q 000680 620 IKWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 620 i~~G~~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
++++..+.+.||.||||||+.+.|...+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=84.55 E-value=0.33 Score=22.53 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++++|+.||||||..+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.43 E-value=0.38 Score=21.99 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=8.3
Q ss_pred CCCCEEEEECCCC
Q ss_conf 4998999828788
Q 000680 736 NDADIYLFDDPFS 748 (1354)
Q Consensus 736 ~~~di~lLDdp~s 748 (1354)
.+.++.++|....
T Consensus 84 ~~~~~vi~d~~~~ 96 (213)
T d1bifa1 84 EGGHVAVFDATNT 96 (213)
T ss_dssp TCCSEEEEESCCC
T ss_pred CCCCEEEEECCCC
T ss_conf 1898898606776
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=84.36 E-value=0.34 Score=22.43 Aligned_cols=19 Identities=42% Similarity=0.761 Sum_probs=9.7
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998799964899999993
Q 000680 1246 VGVVGRTGSGKTTLISALF 1264 (1354)
Q Consensus 1246 VgIVGrTGSGKSTL~~~L~ 1264 (1354)
|||.|..||||||++..|-
T Consensus 6 IgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 6 IGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998988778999999999
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=84.35 E-value=0.61 Score=20.39 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=10.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHH
Q ss_conf 9969999879996489999999
Q 000680 1242 EGTRVGVVGRTGSGKTTLISAL 1263 (1354)
Q Consensus 1242 ~GekVgIVGrTGSGKSTL~~~L 1263 (1354)
||+.+-|+|++|+||||++..|
T Consensus 28 pg~~~~i~G~~G~GKS~l~l~l 49 (274)
T d1nlfa_ 28 AGTVGALVSPGGAGKSMLALQL 49 (274)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHH
T ss_conf 8958999928999899999999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=84.32 E-value=0.34 Score=22.37 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=28.3
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCC
Q ss_conf 88508808999879998877899888298658873899919199980788
Q 000680 618 LDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS 667 (1354)
Q Consensus 618 l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~p 667 (1354)
++-++-..++++||+|+||||-+.-+.-.+. .+| .+++.+.=+.
T Consensus 4 ~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g-----~kV~lit~Dt 47 (211)
T d2qy9a2 4 VEGKAPFVILMVGVNGVGKTTTIGKLARQFE-QQG-----KSVMLAAGDT 47 (211)
T ss_dssp CCSCTTEEEEEECCTTSCHHHHHHHHHHHHH-TTT-----CCEEEECCCT
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CCEEEEECCC
T ss_conf 7899997999989999998999999999999-779-----9479982321
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.30 E-value=0.33 Score=22.47 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.28 E-value=0.46 Score=21.32 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=9.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHH
Q ss_conf 60996999987999648999999
Q 000680 1240 FSEGTRVGVVGRTGSGKTTLISA 1262 (1354)
Q Consensus 1240 I~~GekVgIVGrTGSGKSTL~~~ 1262 (1354)
+++|+.+-|.|++|+||||++.-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq 53 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHT 53 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
T ss_conf 86996999983899988999999
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=84.26 E-value=0.41 Score=21.75 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899987999887789988829865
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
.++|-||.||||+|..+.|...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=84.22 E-value=0.4 Score=21.82 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0899987999887789988829
Q 000680 624 QKIAVCGSVGAGKSSLLYAILG 645 (1354)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilG 645 (1354)
.+++|+|+.||||||..+.+..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=84.08 E-value=0.22 Score=23.88 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=20.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 808999879998877899888298
Q 000680 623 AQKIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.-.++++|+.|+|||||++.+.+.
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 689999999999889999887338
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.08 E-value=0.45 Score=21.47 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=13.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799964899999993154
Q 000680 1245 RVGVVGRTGSGKTTLISALFRLV 1267 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl~ 1267 (1354)
.|.|+|+.||||||++..|..-|
T Consensus 10 iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999999899999999985
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=84.06 E-value=0.4 Score=21.85 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=22.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 880899987999887789988829865
Q 000680 622 WAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
.+..+.|.|+.|+|||||+..++.+..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 598799986999829999999999779
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.98 E-value=0.36 Score=22.22 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|..|+|||||+..+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.97 E-value=0.4 Score=21.85 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|..|+|||||++.+++.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.90 E-value=0.81 Score=19.40 Aligned_cols=110 Identities=17% Similarity=0.225 Sum_probs=63.7
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 50880899987999887789988829865887389991919998078878987588997239999989999999995107
Q 000680 620 IKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALD 699 (1354)
Q Consensus 620 i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~~~d~~~y~~vi~ac~L~ 699 (1354)
+++..-+.+.||.|+|||++.+++.+++.. .+-++. .
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~~---------~~~~~~----------------------------------~ 74 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQA---------NFISIK----------------------------------G 74 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTTC---------EEEEEC----------------------------------H
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCC---------CEEEEE----------------------------------H
T ss_conf 998875788789987630477887877189---------479988----------------------------------7
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH---------HHHHHHHHHHH---HHC
Q ss_conf 988218999963126888877948999999999980499899982878886999---------99999999997---814
Q 000680 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---------TAATLFNECVM---AAL 767 (1354)
Q Consensus 700 ~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAvy~~~di~lLDdp~salD~~---------~~~~if~~~i~---~~l 767 (1354)
.++.. +..| ...++-|-.+.+|--..|-|+++||.=...... ..+.+.+..+. +..
T Consensus 75 ~~l~~------~~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 142 (265)
T d1r7ra3 75 PELLT------MWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 142 (265)
T ss_dssp HHHHT------SCTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC---
T ss_pred HHHHH------CCCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99525------3165------15899999999998639843568754632455787678873799999999999962867
Q ss_pred --CCCEEEEECCCCCHHHH
Q ss_conf --99589997489431520
Q 000680 768 --EKKTVILVTHQVEFLSE 784 (1354)
Q Consensus 768 --~~kT~Ilvth~~~~l~~ 784 (1354)
.+.-+|..||+++.++.
T Consensus 143 ~~~~v~vi~ttn~~~~ld~ 161 (265)
T d1r7ra3 143 TKKNVFIIGATNRPDIIDP 161 (265)
T ss_dssp ---CCEEEECCBSCTTTSC
T ss_pred CCCCEEEEEECCCCHHCCH
T ss_conf 7799899991799222799
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.85 E-value=0.7 Score=19.90 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=29.8
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 6885088089998799988778998882986588738999
Q 000680 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL 656 (1354)
Q Consensus 617 ~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~ 656 (1354)
-+.+.+|+..+|.|+.|+|||+|+..+..-.......+.+
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V 101 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV 101 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEE
T ss_pred ECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 2563678877766799989899999999988761799699
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.85 E-value=0.29 Score=22.97 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799988778998882986
Q 000680 626 IAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 626 ~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
++++|+.||||||+.+.+...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.84 E-value=0.36 Score=22.22 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=83.80 E-value=0.3 Score=22.84 Aligned_cols=10 Identities=20% Similarity=0.374 Sum_probs=3.2
Q ss_pred EEEEECCCCC
Q ss_conf 9998287888
Q 000680 740 IYLFDDPFSA 749 (1354)
Q Consensus 740 i~lLDdp~sa 749 (1354)
+|+-..|+..
T Consensus 114 ~~ir~~~~~~ 123 (323)
T d2qm8a1 114 AFIRPSPSSG 123 (323)
T ss_dssp EEEECCCCCS
T ss_pred EEECCCCCCC
T ss_conf 0112665345
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=83.78 E-value=0.5 Score=21.06 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=26.5
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8508808999879998877899888298658
Q 000680 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPK 649 (1354)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~ 649 (1354)
..++|.++++.|+.||||||+.+.++..+..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=83.74 E-value=0.41 Score=21.78 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=15.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879996489999999315
Q 000680 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl 1266 (1354)
.|||+|...+|||||++.|.+.
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999934588499999999703
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.70 E-value=0.37 Score=22.15 Aligned_cols=21 Identities=43% Similarity=0.648 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999887789988829
Q 000680 625 KIAVCGSVGAGKSSLLYAILG 645 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilG 645 (1354)
.++++|..|+|||||+..+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.69 E-value=0.35 Score=22.27 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879996489999999315
Q 000680 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~Rl 1266 (1354)
||++||++|+|||||++.|.+=
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.58 E-value=0.45 Score=21.45 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|..|+|||||+..+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.56 E-value=0.45 Score=21.44 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=83.55 E-value=0.019 Score=32.43 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=14.9
Q ss_pred CCCEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 2622886099699998799964899999993
Q 000680 1234 KGITCTFSEGTRVGVVGRTGSGKTTLISALF 1264 (1354)
Q Consensus 1234 k~Isl~I~~GekVgIVGrTGSGKSTL~~~L~ 1264 (1354)
++.++.+.+| .+.|+|++||||||++.+|.
T Consensus 16 ~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 16 FARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 0279974998-08998899998799999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=83.53 E-value=0.34 Score=22.41 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=16.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf 9998287888699999999999997814995899974894315
Q 000680 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL 782 (1354)
Q Consensus 740 i~lLDdp~salD~~~~~~if~~~i~~~l~~kT~Ilvth~~~~l 782 (1354)
|++.| +..++.+.+.+++ +.+. ..++.+|++-+..+.+
T Consensus 98 ilVvd-a~~g~~~~~~~~~-~~~~---~~~~p~iivlNK~D~~ 135 (227)
T d1g7sa4 98 ILIVD-INEGFKPQTQEAL-NILR---MYRTPFVVAANKIDRI 135 (227)
T ss_dssp EEEEE-TTTCCCHHHHHHH-HHHH---HTTCCEEEEEECGGGS
T ss_pred EEEEE-CCCCCCCCHHHHH-HHHH---CCCCEEEEEEECCCCC
T ss_conf 99986-1237632025777-7764---3797599999893078
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=83.41 E-value=0.55 Score=20.73 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=15.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHH
Q ss_conf 60996999987999648999999
Q 000680 1240 FSEGTRVGVVGRTGSGKTTLISA 1262 (1354)
Q Consensus 1240 I~~GekVgIVGrTGSGKSTL~~~ 1262 (1354)
+++|+.+-|.|++|+|||+++.-
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHH
T ss_conf 96983999994799999999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=83.31 E-value=0.53 Score=20.89 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=26.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC-C-CCCCEEEECCEECC
Q ss_conf 099699998799964899999993154-8-99977999696389
Q 000680 1241 SEGTRVGVVGRTGSGKTTLISALFRLV-E-PAGGSILIDGVDIC 1282 (1354)
Q Consensus 1241 ~~GekVgIVGrTGSGKSTL~~~L~Rl~-e-~~~G~I~IDGvDI~ 1282 (1354)
+.|-.|-+.|.+|||||||.+.|.+-. + ..--.+.+||-+++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHH
T ss_conf 99869999899999989999999988777427508997536788
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.29 E-value=0.32 Score=22.59 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=14.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099699998799964899999993154
Q 000680 1241 SEGTRVGVVGRTGSGKTTLISALFRLV 1267 (1354)
Q Consensus 1241 ~~GekVgIVGrTGSGKSTL~~~L~Rl~ 1267 (1354)
+.+..|-|.|+.||||||++..|..-|
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 678289998999998799999999986
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.28 E-value=0.36 Score=22.23 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEE--EEECCCCCCCHH-HHHHHHHHHHH-HHC-CCCEEEEECCCCCH
Q ss_conf 77948999999999980499899--982878886999-99999999997-814-99589997489431
Q 000680 719 NLSGGQKQRIQLARAVYNDADIY--LFDDPFSAVDAH-TAATLFNECVM-AAL-EKKTVILVTHQVEF 781 (1354)
Q Consensus 719 ~LSGGQkqRi~LARAvy~~~di~--lLDdp~salD~~-~~~~if~~~i~-~~l-~~kT~Ilvth~~~~ 781 (1354)
...|..+.|....+..+..++.+ +.|-.-..-+.. ..+.+.+.+.. ..+ ++..++++-|..+.
T Consensus 53 d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl 120 (207)
T d2fh5b1 53 DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120 (207)
T ss_dssp ECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTS
T ss_pred ECCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 02112343301566655430556347776665345999999999999768875158947999988546
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=83.16 E-value=0.39 Score=21.90 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 08999879998877899888298658
Q 000680 624 QKIAVCGSVGAGKSSLLYAILGEIPK 649 (1354)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ilGe~~~ 649 (1354)
++++|.|+.||||||+.+.|...+..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.07 E-value=0.46 Score=21.38 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999887789988829
Q 000680 625 KIAVCGSVGAGKSSLLYAILG 645 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilG 645 (1354)
.++++|+.|+|||||+..+++
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.01 E-value=0.41 Score=21.79 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++|+|+.|+|||||+..+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=82.98 E-value=0.52 Score=20.94 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999879998877899888298658
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIPK 649 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~~ 649 (1354)
-++|+|.+.+|||||+.+|+|....
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~~ 34 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWTS 34 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCH
T ss_conf 8999972488699999999704121
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.91 E-value=0.26 Score=23.31 Aligned_cols=22 Identities=27% Similarity=0.619 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|..|+|||||+..+++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=82.79 E-value=0.36 Score=22.17 Aligned_cols=42 Identities=12% Similarity=0.356 Sum_probs=33.2
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECC
Q ss_conf 850880899987999887789988829865887389991919998078
Q 000680 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT 666 (1354)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~ 666 (1354)
-+++|.++.+.|+.|||||++...+........| .+.|+.-+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~------~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------TCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC------CEEEEESS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC------EEEEECCC
T ss_conf 9667358998057774789999999999870898------79998654
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.71 E-value=0.79 Score=19.47 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 89998799988778998882986588738
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~~~~G~ 653 (1354)
.++++|..|+|||||+.-+...-.+..|.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCE
T ss_conf 99999999988899999884089797247
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=82.59 E-value=0.47 Score=21.26 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=31.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC----EEEEEECCC
Q ss_conf 8999879998877899888298658873899919----199980788
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----SIAYVSQTS 667 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g----~iayv~Q~p 667 (1354)
=+.++||+|||||-|.+.+.++++. --+.+++ .++||..+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGGC----CCCCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCEEEECCEEECCH
T ss_conf 4799899998899999999987389--88986255114111110444
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=82.48 E-value=0.51 Score=21.01 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHHHHHCCC
Q ss_conf 948999999999980499
Q 000680 721 SGGQKQRIQLARAVYNDA 738 (1354)
Q Consensus 721 SGGQkqRi~LARAvy~~~ 738 (1354)
..|.-.|-.|+..+..++
T Consensus 62 ~~~~i~r~~L~~~vf~~~ 79 (208)
T d1vhta_ 62 ADGTLQRRALRERIFANP 79 (208)
T ss_dssp TTSCBCHHHHHHHHHTCH
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 786520012466652138
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.47 E-value=0.52 Score=20.92 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++|.|+.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.46 E-value=0.28 Score=23.13 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|+.|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=82.38 E-value=0.64 Score=20.24 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 880899987999887789988829865
Q 000680 622 WAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
++-.++|+|...+|||||++++.|.-.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 752789986675443555425426615
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.29 E-value=0.47 Score=21.26 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++|+|+.|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.27 E-value=0.51 Score=20.99 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799988778998882986
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~ 647 (1354)
.++++|..|+|||||++.+.+.-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989908899999997199
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=82.23 E-value=0.59 Score=20.51 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=11.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 609969999879996489999999
Q 000680 1240 FSEGTRVGVVGRTGSGKTTLISAL 1263 (1354)
Q Consensus 1240 I~~GekVgIVGrTGSGKSTL~~~L 1263 (1354)
+++|+.+-|.|++|+|||+++.-+
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~ 54 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQS 54 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 628859999917999989999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.19 E-value=0.38 Score=21.98 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999879998877899888298658
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIPK 649 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~~ 649 (1354)
...+.||+|+||||+..++..++..
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 4999879999888999999999875
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=82.18 E-value=0.49 Score=21.12 Aligned_cols=14 Identities=36% Similarity=0.733 Sum_probs=4.8
Q ss_pred CCCCCCHHHHHHHH
Q ss_conf 79996489999999
Q 000680 1250 GRTGSGKTTLISAL 1263 (1354)
Q Consensus 1250 GrTGSGKSTL~~~L 1263 (1354)
|..||||||+++.|
T Consensus 8 G~~GsGKTT~~~~L 21 (194)
T d1nksa_ 8 GIPGVGKSTVLAKV 21 (194)
T ss_dssp ECTTSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
T ss_conf 98998989999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=81.94 E-value=0.23 Score=23.72 Aligned_cols=109 Identities=15% Similarity=0.087 Sum_probs=51.8
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 68850880899987999887789988829865887389991919998078878987588997239999989999999995
Q 000680 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKAC 696 (1354)
Q Consensus 617 ~l~i~~G~~~~ivG~~GsGKStLl~~ilGe~~~~~G~v~~~g~iayv~Q~pwi~~~TireNIlfg~~~d~~~y~~vi~ac 696 (1354)
|+.-++...++++||+|+||||-+.-|.-.+. .+| .+++.+.=+.+- ..-.+
T Consensus 5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~-----~kV~lit~Dt~R----------------~gA~e------ 56 (213)
T d1vmaa2 5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEG-----KSVVLAAADTFR----------------AAAIE------ 56 (213)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTT-----CCEEEEEECTTC----------------HHHHH------
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CCEEEEEECCCC----------------CCHHH------
T ss_conf 67999998999989999988999999999999-779-----906999601334----------------20467------
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCCCHHHHHH
Q ss_conf 107988218999963126888877948999999999980499899982878-8869999999
Q 000680 697 ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF-SAVDAHTAAT 757 (1354)
Q Consensus 697 ~L~~dl~~lp~GD~T~IGe~G~~LSGGQkqRi~LARAvy~~~di~lLDdp~-salD~~~~~~ 757 (1354)
+|...-+.+. -.......+..+ -.-.+-..+.+...+.|++|.|=|= +.-|..-...
T Consensus 57 QL~~~a~~l~--i~~~~~~~~~d~--~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~e 114 (213)
T d1vmaa2 57 QLKIWGERVG--ATVISHSEGADP--AAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEE 114 (213)
T ss_dssp HHHHHHHHHT--CEEECCSTTCCH--HHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHH
T ss_pred HHHHHHHHCC--CCCCCCCCCCCH--HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 8887764327--641036777768--998788789998769998998245533016888899
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.67 E-value=0.57 Score=20.62 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|..|+|||||++.+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=81.54 E-value=0.55 Score=20.72 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999987999648999999931
Q 000680 1244 TRVGVVGRTGSGKTTLISALFR 1265 (1354)
Q Consensus 1244 ekVgIVGrTGSGKSTL~~~L~R 1265 (1354)
=||.+||+.|+|||||++.+.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999899999999964
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.26 E-value=0.65 Score=20.18 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999648999999931
Q 000680 1245 RVGVVGRTGSGKTTLISALFR 1265 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~R 1265 (1354)
||.+||+.|+|||||++.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.20 E-value=0.66 Score=20.12 Aligned_cols=12 Identities=8% Similarity=0.390 Sum_probs=4.9
Q ss_pred CCEEEEECCCCCC
Q ss_conf 9899982878886
Q 000680 738 ADIYLFDDPFSAV 750 (1354)
Q Consensus 738 ~di~lLDdp~sal 750 (1354)
+++.++| ..+++
T Consensus 137 ~~~~viD-s~~~~ 148 (254)
T d1pzna2 137 VKLLIVD-SLTSH 148 (254)
T ss_dssp EEEEEEE-TSSTT
T ss_pred CEEEEEC-CHHHE
T ss_conf 4268603-11210
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=81.14 E-value=1 Score=18.65 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=7.5
Q ss_pred CCCCEEEEECCCCC
Q ss_conf 49989998287888
Q 000680 736 NDADIYLFDDPFSA 749 (1354)
Q Consensus 736 ~~~di~lLDdp~sa 749 (1354)
.+.+++++|-..+.
T Consensus 131 ~~~~liViDSi~al 144 (263)
T d1u94a1 131 GAVDVIVVDSVAAL 144 (263)
T ss_dssp TCCSEEEEECGGGC
T ss_pred CCCCEEEEECCCCC
T ss_conf 99989999886556
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.06 E-value=0.61 Score=20.41 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999879998877899888298658
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIPK 649 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~~ 649 (1354)
+++|-|..||||||+++.|...+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=81.02 E-value=1 Score=18.62 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=27.3
Q ss_pred CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4226228860996999987999648999999931
Q 000680 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFR 1265 (1354)
Q Consensus 1232 VLk~Isl~I~~GekVgIVGrTGSGKSTL~~~L~R 1265 (1354)
.+++-.+.+ .|.-|-|.|++|+||||++..|.+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=81.01 E-value=0.45 Score=21.40 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 8999879998877899888298658873
Q 000680 625 KIAVCGSVGAGKSSLLYAILGEIPKISG 652 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe~~~~~G 652 (1354)
-..+.||+|+||||+.+++..++....+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 4898799997388999999850388853
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.97 E-value=0.58 Score=20.58 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|..|+|||||+..+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=80.91 E-value=0.62 Score=20.34 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=9.3
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999879996489999999
Q 000680 1245 RVGVVGRTGSGKTTLISAL 1263 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L 1263 (1354)
+|+|-|+.||||||++..|
T Consensus 5 ~IaIdGp~GsGKgT~ak~L 23 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKII 23 (223)
T ss_dssp EEEEECSSCSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9997899987989999999
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.90 E-value=0.72 Score=19.79 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=25.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC-----EEEECCE
Q ss_conf 999987999648999999931-----5489997-----7999696
Q 000680 1245 RVGVVGRTGSGKTTLISALFR-----LVEPAGG-----SILIDGV 1279 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~R-----l~e~~~G-----~I~IDGv 1279 (1354)
||.+||.+|+|||||++.+.. -++|+-| .+.+||.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~ 48 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKS 48 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCEEECCC
T ss_conf 899999899798999999970999876376133101121000220
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=80.80 E-value=0.39 Score=21.96 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=24.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0880899987999887789988829865
Q 000680 621 KWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1354)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~ilGe~~ 648 (1354)
+++..+.++||.|+|||++.+++.+++.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.61 E-value=0.66 Score=20.11 Aligned_cols=21 Identities=38% Similarity=0.727 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987999648999999931
Q 000680 1245 RVGVVGRTGSGKTTLISALFR 1265 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~R 1265 (1354)
||.+||..|+|||||++.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.59 E-value=0.54 Score=20.80 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999987999648999999931-----5489997
Q 000680 1245 RVGVVGRTGSGKTTLISALFR-----LVEPAGG 1272 (1354)
Q Consensus 1245 kVgIVGrTGSGKSTL~~~L~R-----l~e~~~G 1272 (1354)
||.+||..|+|||||++.+.+ -+.|..|
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~ 39 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG 39 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999999999198999999973988865145555
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=80.10 E-value=0.32 Score=22.63 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=23.9
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 6885088089998799988778998882
Q 000680 617 NLDIKWAQKIAVCGSVGAGKSSLLYAIL 644 (1354)
Q Consensus 617 ~l~i~~G~~~~ivG~~GsGKStLl~~il 644 (1354)
=+.+.+|+..+|.|+.|+|||+|+..+.
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred CCCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 1454677667600677888579999977
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.10 E-value=0.68 Score=20.02 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879998877899888298
Q 000680 625 KIAVCGSVGAGKSSLLYAILGE 646 (1354)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ilGe 646 (1354)
.++++|..|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|